BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0174.3
(919 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis tha... 676 0.0
ref|XP_479825.1| putative DNA polymerase III like protein [Oryza... 436 e-120
gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma s... 362 3e-98
pir||T00615 DNA polymerase III gamma chain homolog T8K22.22 - Ar... 362 3e-98
gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa... 358 3e-97
ref|NP_172898.2| DNA polymerase-related [Arabidopsis thaliana] 355 5e-96
gb|AAF43947.1| Contains similarity to DNA Pol III Gamma and Tau ... 352 3e-95
ref|NP_916776.1| P0435H01.25 [Oryza sativa (japonica cultivar-gr... 332 3e-89
gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sa... 329 3e-88
dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana] g... 314 7e-84
emb|CAB78884.1| putative protein [Arabidopsis thaliana] gi|45394... 311 8e-83
ref|NP_193617.2| expressed protein [Arabidopsis thaliana] 311 8e-83
dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [O... 216 4e-54
ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Ther... 204 1e-50
gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochloroco... 200 2e-49
ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloe... 200 2e-49
ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera wat... 199 3e-49
ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nost... 197 2e-48
ref|ZP_00328132.1| COG2812: DNA polymerase III, gamma/tau subuni... 196 4e-48
ref|ZP_00160621.2| COG2812: DNA polymerase III, gamma/tau subuni... 194 9e-48
>emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana]
gi|4220511|emb|CAA22984.1| DNA polymerase III like
protein [Arabidopsis thaliana]
gi|15233988|ref|NP_194210.1| expressed protein
[Arabidopsis thaliana] gi|7484924|pir||T05555 DNA
polymerase III gamma chain homolog F22K18.10 -
Arabidopsis thaliana
Length = 815
Score = 676 bits (1743), Expect = 0.0
Identities = 411/891 (46%), Positives = 545/891 (61%), Gaps = 94/891 (10%)
Query: 4 RRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPE-ASR 62
RRHSVD+PI++TLVALRRVRSLRDP T S+ K +SL+DNV+WE GS NGISL F E A
Sbjct: 5 RRHSVDVPITRTLVALRRVRSLRDPCTTSMSKFASLLDNVKWETGSNNGISLQFVEHADD 64
Query: 63 ECDSDDNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSRLKPSGMSFQDSQHNDDELVYSN 122
C + D + F + + + D L S++
Sbjct: 65 ACKAA--ADAPVGLIPFGSYSIMEELESGCDLHKLSSKVI-------------------- 102
Query: 123 PNRQCSSGNKSSSESCDSNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGRIDHSR 182
N + + ++SS SC S+ +G DLA P + ++ +
Sbjct: 103 -NVEGDACSRSSERSC-SDLSVKGRDLACNAP-------------------SISHVEEAG 141
Query: 183 SDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNNDNGCGI 242
S + + A G + +G+P S + HS D + DFD N GCGI
Sbjct: 142 SGGRYRTHYSTKLASSVGEYGSRLGSPMNSTN-----HSYYGDEDVDFDSQSNR--GCGI 194
Query: 243 SFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISPTLET-PRSLSM 301
++CWS++PR+R SN S +E+ PL L G+ N D ++P+ E RSLS
Sbjct: 195 TYCWSRTPRYRGSNQSSDVEEYPL---------LPGNGNGESDV--VTPSHEVLSRSLSQ 243
Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
KFRP SF +LVGQ VVV+ LL I RG I S YLFHGPRGTGKTS S+IFAAALNCLS
Sbjct: 244 KFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQA 303
Query: 362 GQ-KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDE 420
+PCGLC EC +FSGR ++V E DS ++NR ++SL+K+A +PP+SSRFKVFIIDE
Sbjct: 304 AHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFIIDE 363
Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
CQLL ETW +L N+L+N S+H VF+++T +L+KLPR+ +SR+Q YHF KV DADI+ +L
Sbjct: 364 CQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTKL 423
Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDE 540
KIC+EEG+DFDQ A+DFIA+KS GS+RDAE+MLDQLSLLGK+I SL ++L G+VSDDE
Sbjct: 424 AKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLIGVVSDDE 483
Query: 541 LLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSKF 600
LL+LLDLA+SSDTSNTVIRARELMRS+I P+QL+SQLAN+IMDI+AG + S R +F
Sbjct: 484 LLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESSSATRLRF 543
Query: 601 SGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPS--VDVNDTK 658
R+TSE ++QKL A++ILS+AEK LR SKNQTTWLTVALLQLS+ D S D N
Sbjct: 544 LTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDSSSFATDENGRN 603
Query: 659 LCLREQSMEHLATGQCGD---KSYRLGVQEDHKGTLDAIWYKATEICQSGQLKTFLRKKG 715
++ + ++G GD G + + T++++W T++C S LK FL K+G
Sbjct: 604 QINKDVELSSTSSGCPGDVIKSDAEKGQERNCNETVESVWKTVTDLCCSDSLKRFLWKRG 663
Query: 716 KLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIELRITYEPRA- 774
+L+SL VD+ +AIAELEF HV++AEKSWKLIA S Q +LGCN+E+++ A
Sbjct: 664 RLTSLTVDKG---VAIAELEFYTPQHVARAEKSWKLIADSFQSVLGCNVEIQMNLVISAC 720
Query: 775 SDSKYAKLKRS-SFSIFSCSRRAQQKSLSSNGSESDYADHVSQNPMIKDKTLTSSDYHGM 833
S K AK S F +FSCSRR KS + ++SD A S+ P
Sbjct: 721 SPPKSAKAAASLFFGLFSCSRRMLHKSYLTTRTDSDCA---SEKPA-------------- 763
Query: 834 DVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVDSSKEKGNRCAHLVP 884
V +LRSC+GN+L + R + S + SCS H+ P
Sbjct: 764 -VTNSLRSCQGNVLRA--RSVRSSANASSRMSCSSDQGDATSAMCTPHIPP 811
>ref|XP_479825.1| putative DNA polymerase III like protein [Oryza sativa (japonica
cultivar-group)] gi|42407921|dbj|BAD09061.1| putative
DNA polymerase III like protein [Oryza sativa (japonica
cultivar-group)] gi|42407584|dbj|BAD10815.1| putative
DNA polymerase III like protein [Oryza sativa (japonica
cultivar-group)]
Length = 799
Score = 436 bits (1121), Expect = e-120
Identities = 244/536 (45%), Positives = 343/536 (63%), Gaps = 21/536 (3%)
Query: 276 LHGDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYL 335
+ G++ R +G E+ RSL K+RP +FS+L GQNVV +SL A+ +G +A YL
Sbjct: 131 IEGEQLGRREGATFQ---ESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYL 187
Query: 336 FHGPRGTGKTSASRIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTD 395
FHGP G GKTSA+RIFAA+LNC S G +PCG C EC+ FSG S V E+D+ +++
Sbjct: 188 FHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKS 247
Query: 396 QVKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKL 455
+V +L++NAC P SS FKV I+D+CQ + E W S+ ++LE + + +FVMIT D+DKL
Sbjct: 248 RVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKL 307
Query: 456 PRSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLD 515
P ++V Q+Y F KV +A+IA RL +IC+ EG++F+ AL+ IA K+ GS+RDA MLD
Sbjct: 308 PSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLD 367
Query: 516 QLSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVS 575
QL+LLGK+I S+ ++L G VSD+ELL+LL+LA SSD + V RAREL+ S++ PLQL++
Sbjct: 368 QLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLA 427
Query: 576 QLANLIMDILAGKCVDGGSEVRSKFSGRYTS-EADLQKLSRAVRILSEAEKQLRISKNQT 634
QLANLIMDILAG+ EVR K +G++TS E D+ KL A+ ILSE EKQL+ +KNQ+
Sbjct: 428 QLANLIMDILAGRHQSDSQEVR-KVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQS 486
Query: 635 TWLTVALLQLS------------SVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRLG 682
TWLT ALLQ + S + +D L+++S++ + +K L
Sbjct: 487 TWLTAALLQFNMREPYCLDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCYQNKIGCLD 546
Query: 683 VQEDHKGTLDAIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHV 742
+ L+ IW KA E C S L + LRK GKLSSL+ +T +A+AEL+F H V
Sbjct: 547 MNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLY---TTQGVAVAELQFCHPEDV 603
Query: 743 SKAEKSWKLIASSLQFILGCNIELRITYEPRASDSKYAKLKRSSFSIFSCSRRAQQ 798
E W SLQ +L CN+++RI P ++ ++ K SS S+ SR Q+
Sbjct: 604 PTTESFWNPFVVSLQNLLKCNVDIRINLSPISTSNRVVS-KNSSVSLVMQSREDQE 658
Score = 54.3 bits (129), Expect = 2e-05
Identities = 25/38 (65%), Positives = 32/38 (83%)
Query: 1 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSS 38
++GRRHSVDIPIS+ L+A+ R RSLRDP TNS+ K S+
Sbjct: 2 IEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSA 39
>gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit
[Arabidopsis thaliana] gi|18395372|ref|NP_565285.1| DNA
polymerase-related [Arabidopsis thaliana]
gi|8980710|gb|AAF82285.1| STICHEL [Arabidopsis thaliana]
Length = 1218
Score = 362 bits (929), Expect = 3e-98
Identities = 195/363 (53%), Positives = 257/363 (70%), Gaps = 5/363 (1%)
Query: 292 TLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIF 351
T ET RS S K+RP F +L+GQ++VV+SL+ A+ R IA YLF GPRGTGKTS +RIF
Sbjct: 444 TPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIF 503
Query: 352 AAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKN--ACIPPI 409
+AALNC++ E KPCG C+EC F SG+SK+ E+D D+V+ L+KN +P
Sbjct: 504 SAALNCVATEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRN 563
Query: 410 SSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFP 469
SS +KVF+IDEC LL ++TW S LEN + VVF+ IT DL+ +PR+ SR Q + F
Sbjct: 564 SSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFD 623
Query: 470 KVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLV 529
K+KD+DI RL+KI +E LD D ALD IA + GS+RDAE ML+QLSLLGK+I +LV
Sbjct: 624 KLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALV 683
Query: 530 HELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAG-- 587
+EL G+VSD++LL LL+LALSSDT+ TV RAREL+ P+ L+SQLA+LIMDI+AG
Sbjct: 684 NELVGVVSDEKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTY 743
Query: 588 KCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSV 647
K VD + F GR +EAD++ L A+++LSEAEKQLR+S +++TW T LLQL S+
Sbjct: 744 KVVD-EKYSNAFFDGRNLTEADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSM 802
Query: 648 DYP 650
P
Sbjct: 803 PSP 805
Score = 37.4 bits (85), Expect = 2.3
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 691 LDAIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWK 750
L+ IW K E C S L+ L GKL S+ + +A + F +AE+
Sbjct: 912 LNDIWRKCIERCHSKTLRQLLYTHGKLISI---SEVEGILVAYIAFGENDIKLRAERFLS 968
Query: 751 LIASSLQFILGCNIELRITYEP 772
I +S++ +L ++E+RI P
Sbjct: 969 SITNSIEMVLRRSVEVRIILLP 990
>pir||T00615 DNA polymerase III gamma chain homolog T8K22.22 - Arabidopsis
thaliana
Length = 1153
Score = 362 bits (929), Expect = 3e-98
Identities = 195/363 (53%), Positives = 257/363 (70%), Gaps = 5/363 (1%)
Query: 292 TLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIF 351
T ET RS S K+RP F +L+GQ++VV+SL+ A+ R IA YLF GPRGTGKTS +RIF
Sbjct: 444 TPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIF 503
Query: 352 AAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKN--ACIPPI 409
+AALNC++ E KPCG C+EC F SG+SK+ E+D D+V+ L+KN +P
Sbjct: 504 SAALNCVATEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRN 563
Query: 410 SSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFP 469
SS +KVF+IDEC LL ++TW S LEN + VVF+ IT DL+ +PR+ SR Q + F
Sbjct: 564 SSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFD 623
Query: 470 KVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLV 529
K+KD+DI RL+KI +E LD D ALD IA + GS+RDAE ML+QLSLLGK+I +LV
Sbjct: 624 KLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALV 683
Query: 530 HELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAG-- 587
+EL G+VSD++LL LL+LALSSDT+ TV RAREL+ P+ L+SQLA+LIMDI+AG
Sbjct: 684 NELVGVVSDEKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTY 743
Query: 588 KCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSV 647
K VD + F GR +EAD++ L A+++LSEAEKQLR+S +++TW T LLQL S+
Sbjct: 744 KVVD-EKYSNAFFDGRNLTEADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSM 802
Query: 648 DYP 650
P
Sbjct: 803 PSP 805
Score = 37.4 bits (85), Expect = 2.3
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 691 LDAIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWK 750
L+ IW K E C S L+ L GKL S+ + +A + F +AE+
Sbjct: 912 LNDIWRKCIERCHSKTLRQLLYTHGKLISI---SEVEGILVAYIAFGENDIKLRAERFLS 968
Query: 751 LIASSLQFILGCNIELRITYEP 772
I +S++ +L ++E+RI P
Sbjct: 969 SITNSIEMVLRRSVEVRIILLP 990
>gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa (japonica
cultivar-group)]
Length = 1121
Score = 358 bits (920), Expect = 3e-97
Identities = 222/564 (39%), Positives = 326/564 (57%), Gaps = 48/564 (8%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
RSLS K+RP SF++LVGQ+ VV+SL AI R IA YLFHGPRGTGKTSA+RIF+AAL+
Sbjct: 335 RSLSQKYRPRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALS 394
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
C+++ KPCG C EC FF+G + EVD+ ++++ L++N SSR+KVF
Sbjct: 395 CVAIGENKPCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPASATSSRYKVF 454
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
++DEC ++ ++ W++ L+ VVF+ IT D + LPR+ +SR Q Y F K+KD DI
Sbjct: 455 VVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDI 514
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIV 536
CRL KI V+E LD + AALD IA S GS+RDAE MLDQLSLLGKKI SLV++L G+V
Sbjct: 515 VCRLRKIAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVV 574
Query: 537 SDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAG--KCVD--- 591
S+++LL+LL++A+S+DT+ TV R+RELM S + P+ L+SQLA LIMDI+AG + D
Sbjct: 575 SEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTC 634
Query: 592 GGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSS----- 646
GG + GR ++A+L++L +A++ILS+AEKQ+R+S ++TW T ALLQL S
Sbjct: 635 GGEGI----GGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNSE 690
Query: 647 -VDYPSVDVNDTKL-------CLREQSMEH-----LATGQCGDKSYRLGVQEDHKGTLDA 693
+ S K +RE S L T + K+ L H
Sbjct: 691 MIQSRSSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLRTASGHSSPQGV 750
Query: 694 I----WYKATEICQSGQLKTFLR------KKGKLSSLH------VDRSTSWLAIAELEFR 737
+ +A + + G+ ++ R ++ S L V IA + F
Sbjct: 751 VSVSSRMRANDNLKHGECRSVDRVLQDSAQRSNSSELRPMTNDGVQTFNEGYYIAFIAFE 810
Query: 738 HRHHVSKAEKSWKLIASSLQFILGCNIELRITYEPRASDSKYAKL----KRSSFSIFSCS 793
S+A++ I +S++ +L CN+E+RI P + +R F SCS
Sbjct: 811 GSDIKSRAQRFTSSIRNSMETVLRCNVEVRIGLMPELLAGGLKREEDLDERDEFDALSCS 870
Query: 794 RRAQQ-KSLSSNGSESDYADHVSQ 816
+ + K + + +Y++ + +
Sbjct: 871 TNSDRLKGIRNPSRNLNYSEEIEK 894
>ref|NP_172898.2| DNA polymerase-related [Arabidopsis thaliana]
Length = 1116
Score = 355 bits (910), Expect = 5e-96
Identities = 221/547 (40%), Positives = 313/547 (56%), Gaps = 64/547 (11%)
Query: 278 GDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFH 337
G+R +GG T E+ +SLS K++P F +L+GQ++VV+SL+ A+ +G +A YLF
Sbjct: 406 GEREEEEEGGS---TPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQ 462
Query: 338 GPRGTGKTSASRIFAAALNC-LSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQ 396
GPRGTGKTS +RI +AALNC + E KPCG C+EC + G+S+++ E+D+ + N ++
Sbjct: 463 GPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEK 522
Query: 397 VKSLVKN--ACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDK 454
V+ L+K P S R+KVF+IDEC LL + TW SL LEN + VFV IT DLD
Sbjct: 523 VRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDN 582
Query: 455 LPRSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMML 514
+PR+ SR Q Y F KV+D DI RL KI +E LD + ALD IA + GS+RDAE ML
Sbjct: 583 VPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETML 642
Query: 515 DQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLV 574
+QLSL+GK+I + LV+EL G+VSDD+LL LL+LALSSDT+ TV +AREL+ P+ ++
Sbjct: 643 EQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMM 702
Query: 575 SQLANLIMDILAGKCVDGGSEVRSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQ 633
SQLA+LIMDI+AG + F R +EADL++L A+++LSEAEKQLR+S ++
Sbjct: 703 SQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDR 762
Query: 634 TTWLTVALLQLSSVDYPSVDVNDTKLCLREQ--------SMEHLATGQ-----CGDKSYR 680
+TW LLQL S+ PS T R+ S E +A Q C + +
Sbjct: 763 STWFIATLLQLGSM--PSPGTTHTGSSRRQSSRATEESISREVIAYKQRSGLQCSNTASP 820
Query: 681 LGVQED-------------------------HKGT--------------LDAIWYKATEI 701
+++ H T L+ IW K +
Sbjct: 821 TSIRKSGNLVREVKLSSSSSEVLESDTSMASHDDTTASTMTLTCRNSEKLNDIWIKCVDR 880
Query: 702 CQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILG 761
C S LK L GKL S+ + +A + F ++AE+ I +S++ +L
Sbjct: 881 CHSKTLKQLLYAHGKLLSI---SEVEGILVAYIAFGEGEIKARAERFVSSITNSIEMVLR 937
Query: 762 CNIELRI 768
N+E+RI
Sbjct: 938 RNVEVRI 944
>gb|AAF43947.1| Contains similarity to DNA Pol III Gamma and Tau from Chlamydia
trachomatis gb|AE001306.1 and contains an AAA (ATPase)
PF|00004 domain. [Arabidopsis thaliana]
gi|25518471|pir||D86279 hypothetical protein F14L17.24 -
Arabidopsis thaliana
Length = 1071
Score = 352 bits (903), Expect = 3e-95
Identities = 221/554 (39%), Positives = 313/554 (55%), Gaps = 71/554 (12%)
Query: 278 GDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFH 337
G+R +GG T E+ +SLS K++P F +L+GQ++VV+SL+ A+ +G +A YLF
Sbjct: 406 GEREEEEEGGS---TPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQ 462
Query: 338 GPRGTGKTSASRIFAAALNC-LSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQ 396
GPRGTGKTS +RI +AALNC + E KPCG C+EC + G+S+++ E+D+ + N ++
Sbjct: 463 GPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEK 522
Query: 397 VKSLVKN--ACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDK 454
V+ L+K P S R+KVF+IDEC LL + TW SL LEN + VFV IT DLD
Sbjct: 523 VRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDN 582
Query: 455 LPRSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMML 514
+PR+ SR Q Y F KV+D DI RL KI +E LD + ALD IA + GS+RDAE ML
Sbjct: 583 VPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETML 642
Query: 515 DQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLV 574
+QLSL+GK+I + LV+EL G+VSDD+LL LL+LALSSDT+ TV +AREL+ P+ ++
Sbjct: 643 EQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMM 702
Query: 575 SQLANLIMDILAGKCVDGGSEVRSKFSGRYT--------SEADLQKLSRAVRILSEAEKQ 626
SQLA+LIMDI+AG + F R +EADL++L A+++LSEAEKQ
Sbjct: 703 SQLASLIMDIIAGAYKALDEKYSEAFLDRRNCEYLKLQMTEADLERLKHALKLLSEAEKQ 762
Query: 627 LRISKNQTTWLTVALLQLSSVDYPSVDVNDTKLCLREQ--------SMEHLATGQ----- 673
LR+S +++TW LLQL S+ PS T R+ S E +A Q
Sbjct: 763 LRVSTDRSTWFIATLLQLGSM--PSPGTTHTGSSRRQSSRATEESISREVIAYKQRSGLQ 820
Query: 674 CGDKSYRLGVQED-------------------------HKGT--------------LDAI 694
C + + +++ H T L+ I
Sbjct: 821 CSNTASPTSIRKSGNLVREVKLSSSSSEVLESDTSMASHDDTTASTMTLTCRNSEKLNDI 880
Query: 695 WYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIAS 754
W K + C S LK L GKL S+ + +A + F ++AE+ I +
Sbjct: 881 WIKCVDRCHSKTLKQLLYAHGKLLSI---SEVEGILVAYIAFGEGEIKARAERFVSSITN 937
Query: 755 SLQFILGCNIELRI 768
S++ +L N+E+RI
Sbjct: 938 SIEMVLRRNVEVRI 951
>ref|NP_916776.1| P0435H01.25 [Oryza sativa (japonica cultivar-group)]
Length = 998
Score = 332 bits (851), Expect = 3e-89
Identities = 204/509 (40%), Positives = 291/509 (57%), Gaps = 26/509 (5%)
Query: 277 HGDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLF 336
H R +H G RSL+ KF P +F D+VGQ++VV++L A+ R I Y+F
Sbjct: 337 HKSRGSQHGRG-------RHRSLTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVF 389
Query: 337 HGPRGTGKTSASRIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQ 396
+GP GTGKTS +R+FA ALNC S E +PC C C+ G+S+ V E+ V D
Sbjct: 390 YGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDG 449
Query: 397 VKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLP 456
+ ++ N + P S ++VFI D+C L A+TW+ +S ++ VVF++++P+LD LP
Sbjct: 450 IVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LP 508
Query: 457 RSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQ 516
+SR Q + FPK+K+ DI L+ I E LD D+ AL IA++S GS+RDAEM LDQ
Sbjct: 509 HIILSRCQKFFFPKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQ 568
Query: 517 LSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQ 576
LSLLG++I LSLV EL G+VSDD+L++LLDLALS+DT NTV R++ + + PL L+SQ
Sbjct: 569 LSLLGQRISLSLVQELVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQ 628
Query: 577 LANLIMDILAGKCVDGGSEVRSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTT 635
LA +I DILAG +R KF R T S+ D++KL +A++ LSEAEKQLR+S ++TT
Sbjct: 629 LATIITDILAGSYTFTRERLRRKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTT 688
Query: 636 WLTVALLQLSSVDYPSVDVNDTKLCLREQSMEH-LATGQCGDKSYRLGVQEDHKGTLDAI 694
WLT ALLQL+ D S+ H + G D+ + +H G + +
Sbjct: 689 WLTAALLQLAP------DKQYVLPSSSSTSLNHGVLAGSFPDRDMAIHSALEHNGNMAST 742
Query: 695 WYK----ATEICQSGQLKTFLRKKGKLS-SLHVDRSTSWLAIAE-----LEFRHRHHVSK 744
Y+ S L T + + S + ++ W A+ E L F R + SK
Sbjct: 743 SYRERRPVEHTSNSHLLSTSAPRANEQSRNSKIENELIWHAVLETPTVQLIFSSRVNKSK 802
Query: 745 AEKSWKLIASSLQFILGCNIELRITYEPR 773
AE I + + +L I L I YE +
Sbjct: 803 AENYRGQILQAFESVLRSAIILEIRYESK 831
>gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa (japonica
cultivar-group)] gi|45642717|gb|AAS72345.1| putative DNA
polymerase III gamma chain [Oryza sativa (japonica
cultivar-group)]
Length = 1023
Score = 329 bits (843), Expect = 3e-88
Identities = 268/840 (31%), Positives = 403/840 (47%), Gaps = 71/840 (8%)
Query: 3 GRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLI------------DNVQWENGS- 49
G S + + L+AL+R RSLRDPST SS + D++ ++
Sbjct: 61 GSSASASAALMRDLLALQRSRSLRDPSTRRSVDSSSRVAAEPQGVGLGLGDDLHDDSSRP 120
Query: 50 GNGISLLFPEASRECDSDDNVDFTSRNLGFKGQRVQ--DATDFKLDCGLLGSRLKPSGMS 107
G + L + + + R G G+R AT LD G+ G+ S
Sbjct: 121 GGALKTLLDQLAENPQPKPSRGPRRRFKGGAGRRAAPASATGGALDRGVDGAAAVSVNSS 180
Query: 108 FQDSQHNDDELVY-----SNPNRQCSSGNKSSSESCDS-NHGGEGLDLASIEPHSNNFRD 161
Q++ + L + + +C + S DS N G + + I +F D
Sbjct: 181 SQEAVCGNKYLFGVVGGDDDDDDECGVELQRPQASQDSRNVCGIPWNWSRIHHRGKSFLD 240
Query: 162 GESCFIATAKSSQLGRIDHSRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHS 221
+S G SD KS A + A G H+ H +
Sbjct: 241 ------MAGRSFSCGL-----SDPKSASAARRSIAATSAGSCGHMDGSRSHPHFPVTARL 289
Query: 222 TSVDINQD-----FDVLDNNDNGCGISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDL 276
TS + D D + N G SF SN S++ D L
Sbjct: 290 TSTSSDSDSLPLLVDGVRNGIGGIARSFSGELGIF---SNQTSEL-DSDLASEARSGQRS 345
Query: 277 HGDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLF 336
G RH +SL+ K+ P +F D++GQ++VV++L AI + I Y+F
Sbjct: 346 RGSHRGRH------------QSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVF 393
Query: 337 HGPRGTGKTSASRIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQ 396
+GP GTGKTS +R+FA ALNC S E +PC C C+ G+S+ + E+ V D
Sbjct: 394 YGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDS 453
Query: 397 VKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLP 456
+ ++ N + P+ ++ +VFI+D+C L +TW+ +S +E VVF++I+P+LD LP
Sbjct: 454 IVDILDNVMLSPVPTQHRVFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LP 512
Query: 457 RSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQ 516
VSR Q + FPK+K+ DI L+ I EGLD D+ AL IA++S GS+RDAEM LDQ
Sbjct: 513 HIIVSRCQKFFFPKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQ 572
Query: 517 LSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQ 576
LSLLG++I +SLV EL G+VSDD+L++LLDLALS+DT NTV R++ + + PL L+SQ
Sbjct: 573 LSLLGQRISMSLVQELVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQ 632
Query: 577 LANLIMDILAGKCVDGGSEVRSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTT 635
LA +I DILAG VR KF T S+ D++KL +A++ LSEAEKQLR+S ++ T
Sbjct: 633 LATIITDILAGTYAFTQERVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMT 692
Query: 636 WLTVALLQLSSVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIW 695
WLT ALLQL+ D V + + Q + G G +S + + G
Sbjct: 693 WLTAALLQLAP-DKQYVLPSSSTSASFNQGLLTCPEGDIG-RSTAIDHTNIYAGPHGLPR 750
Query: 696 YKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASS 755
+ + R KG ++ +L F R + SKAE+S + + +
Sbjct: 751 NANLGVDSDNNMAGTRRGKGPAPTV------------QLMFSSRVNKSKAERSREQVLHA 798
Query: 756 LQFILGCNIELRITYEPRASDSKYAKLKR-SSFSIFSCSRRAQQKSLSSNGSESDYADHV 814
+ +L I L I YEP+ D++ + S + S S A ++S + + S S +++
Sbjct: 799 FESVLASAITLEIRYEPK-DDARAGHVPAISPYPEDSTSNVALRRSFTRHSSASSRGENL 857
>dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana]
gi|15242480|ref|NP_199384.1| hypothetical protein
[Arabidopsis thaliana]
Length = 900
Score = 314 bits (805), Expect = 7e-84
Identities = 251/791 (31%), Positives = 380/791 (47%), Gaps = 141/791 (17%)
Query: 12 ISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFP----EASRECDSD 67
+ + LV L+R RSLRDPS + K D+ + SG +S P S+ SD
Sbjct: 53 LMRDLVVLQRSRSLRDPSASPNLKEDHQ-DSREGRRRSGLRLSGSSPIVSFGTSKVTPSD 111
Query: 68 DNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSRLKPSGMSFQDSQHNDDELVYSNPNRQC 127
+ D +SR K RV++ + VYS P+ +
Sbjct: 112 EKFDRSSR----KSYRVEEVNE-----------------------------VYSVPSVKS 138
Query: 128 SSG---NKSSSESCD-------SNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGR 177
S NK +E+ + GG+ DL S G+ C R
Sbjct: 139 VSKDRINKKVNEAIVKTLSDQLNEVGGDSDDLVSCNVRPR----GDGC-----------R 183
Query: 178 IDHSRSDKKSLRANQVRPAQVEGGIVNHVGNPC-LSVHDDFSPHSTSVDINQDFDVLDNN 236
R +++ RA VR N GN +S+ + P + + D
Sbjct: 184 RRKFRGTRRAGRAVNVRD--------NAAGNESEMSIASNSVPRGEKYEGEEGGGGRDRE 235
Query: 237 DN-GCGISFCWSK-------------------------------SPRFRESNLYSKIEDR 264
N CGI F WS+ +P F +S+ + E
Sbjct: 236 QNMSCGIPFNWSRIHHRGKTFLDIAGRSLSCGISDSKGRKGEAGTPMFSDSSSSDR-EAL 294
Query: 265 PLILHQVDDTDLHGDR---------NMRHDGGDISPTLETPR-------SLSMKFRPNSF 308
PL++ D+ + D N+ +G D ++ R S + K+ P +F
Sbjct: 295 PLLVDSADNEEWVHDYSGELGIFADNLLKNGKDSVIGKKSSRKNTRWHQSFTQKYAPRTF 354
Query: 309 SDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVEGQKPCGL 368
DL+GQN+VV++L AI++ + Y+FHGP GTGKTS +R+FA ALNC S E KPCG+
Sbjct: 355 RDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGV 414
Query: 369 CRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDECQLLKAET 428
C CV + G+++ ++E+ V+ + ++L+ I + V I D+C + +
Sbjct: 415 CSSCVSYDDGKNRYIREMGPVK---SFDFENLLDKTNIRQQQKQQLVLIFDDCDTMSTDC 471
Query: 429 WASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRLEKICVEEG 488
W +LS ++ VVFV++ LD LP VSR Q + FPK+KD DI L+ I +E
Sbjct: 472 WNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEE 531
Query: 489 LDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLA 548
+D D+ AL +A++S GS+RDAEM L+QLSLLG +I + LV E+ G++SD++L++LLDLA
Sbjct: 532 IDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLA 591
Query: 549 LSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSKFSGRY-TSE 607
LS+DT NTV R +M + + PL L+SQLA +I DILAG + + KF R S+
Sbjct: 592 LSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSK 651
Query: 608 ADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL-----------SSVDYPSVDVND 656
D++KL +A++ LSE+EKQLR+S ++ TWLT ALLQL SS D N
Sbjct: 652 EDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQLAPDKQYLLPHSSSAD---ASFNH 708
Query: 657 TKLCLREQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQSGQLKTFLRKKGK 716
T L + S H+ G D S + G ++ +++ IW E + L+ FL K+GK
Sbjct: 709 TPLTDSDPS-NHVVAGTRRDDS-KQGFSCKNRPSVEDIWLAVIENVRVNGLREFLYKEGK 766
Query: 717 LSSLHVDRSTS 727
+ S+ + + S
Sbjct: 767 IFSISIGSAKS 777
>emb|CAB78884.1| putative protein [Arabidopsis thaliana] gi|4539401|emb|CAB37467.1|
putative protein [Arabidopsis thaliana]
gi|7486273|pir||T04874 hypothetical protein F28A21.230 -
Arabidopsis thaliana
Length = 1057
Score = 311 bits (796), Expect = 8e-83
Identities = 196/501 (39%), Positives = 289/501 (57%), Gaps = 30/501 (5%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+SL+ K+ P +F DL+GQN+VV++L A++R + Y+FHGP GTGKTS +RIFA ALN
Sbjct: 431 QSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALN 490
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVK-NACIPPISSRFKV 415
C S+E KPCG C CV G+S ++EV V +++ L+ N + S R V
Sbjct: 491 CHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSPR--V 548
Query: 416 FIIDECQLLKAETWASLSNNLENLS-EHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDA 474
FI D+C L ++ W +LS ++ + HVVF+++ LD LP +SR Q + FPK+KDA
Sbjct: 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608
Query: 475 DIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHEL-- 532
DI L+ I +E ++ D+ AL IA++S GS+RDAEM L+QLSLLG++I + LV EL
Sbjct: 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVS 668
Query: 533 ------------TGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANL 580
G+VSD++L++LLDLALS+DT NTV R +M + + PL L+SQLA +
Sbjct: 669 IVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATV 728
Query: 581 IMDILAGKCVDGGSEVRSKFSGRY-TSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTV 639
I DILAG + + KF R + D++KL +A++ LSEAEKQLR+S ++ TWLT
Sbjct: 729 ITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLTWLTA 788
Query: 640 ALLQLS-SVDYPSVDVNDTKLCLREQSMEHL------ATGQCGDKSYRLGVQEDHKGTLD 692
ALLQL+ +Y + RE S HL A G+ R G ++ ++
Sbjct: 789 ALLQLAPDQNYLLQRSSTADTGGRESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNRPAVE 848
Query: 693 AIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLI 752
IW + E + L+ FL K+G++ SL++ + + L F S AEK I
Sbjct: 849 EIWLEVIEKLRVNGLREFLYKEGRIVSLNLGSAPT----VHLMFSSPLTKSTAEKFRSHI 904
Query: 753 ASSLQFILGCNIELRITYEPR 773
+ + +L + + I E +
Sbjct: 905 MQAFEAVLESPVTIEIRCETK 925
>ref|NP_193617.2| expressed protein [Arabidopsis thaliana]
Length = 1111
Score = 311 bits (796), Expect = 8e-83
Identities = 196/501 (39%), Positives = 289/501 (57%), Gaps = 30/501 (5%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+SL+ K+ P +F DL+GQN+VV++L A++R + Y+FHGP GTGKTS +RIFA ALN
Sbjct: 431 QSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALN 490
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVK-NACIPPISSRFKV 415
C S+E KPCG C CV G+S ++EV V +++ L+ N + S R V
Sbjct: 491 CHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSPR--V 548
Query: 416 FIIDECQLLKAETWASLSNNLENLS-EHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDA 474
FI D+C L ++ W +LS ++ + HVVF+++ LD LP +SR Q + FPK+KDA
Sbjct: 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608
Query: 475 DIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHEL-- 532
DI L+ I +E ++ D+ AL IA++S GS+RDAEM L+QLSLLG++I + LV EL
Sbjct: 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVS 668
Query: 533 ------------TGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANL 580
G+VSD++L++LLDLALS+DT NTV R +M + + PL L+SQLA +
Sbjct: 669 IVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATV 728
Query: 581 IMDILAGKCVDGGSEVRSKFSGRY-TSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTV 639
I DILAG + + KF R + D++KL +A++ LSEAEKQLR+S ++ TWLT
Sbjct: 729 ITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSNDKLTWLTA 788
Query: 640 ALLQLS-SVDYPSVDVNDTKLCLREQSMEHL------ATGQCGDKSYRLGVQEDHKGTLD 692
ALLQL+ +Y + RE S HL A G+ R G ++ ++
Sbjct: 789 ALLQLAPDQNYLLQRSSTADTGGRESSDHHLDPSSDAAGGRSSGLDRRRGDSRKNRPAVE 848
Query: 693 AIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLI 752
IW + E + L+ FL K+G++ SL++ + + L F S AEK I
Sbjct: 849 EIWLEVIEKLRVNGLREFLYKEGRIVSLNLGSAPT----VHLMFSSPLTKSTAEKFRSHI 904
Query: 753 ASSLQFILGCNIELRITYEPR 773
+ + +L + + I E +
Sbjct: 905 MQAFEAVLESPVTIEIRCETK 925
>dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [Oryza sativa
(japonica cultivar-group)]
Length = 622
Score = 216 bits (549), Expect = 4e-54
Identities = 116/266 (43%), Positives = 163/266 (60%), Gaps = 8/266 (3%)
Query: 277 HGDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLF 336
H R +H G RSL+ KF P +F D+VGQ++VV++L A+ R I Y+F
Sbjct: 337 HKSRGSQHGRG-------RHRSLTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVF 389
Query: 337 HGPRGTGKTSASRIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQ 396
+GP GTGKTS +R+FA ALNC S E +PC C C+ G+S+ V E+ V D
Sbjct: 390 YGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDG 449
Query: 397 VKSLVKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLP 456
+ ++ N + P S ++VFI D+C L A+TW+ +S ++ VVF++++P+LD LP
Sbjct: 450 IVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LP 508
Query: 457 RSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQ 516
+SR Q + FPK+K+ DI L+ I E LD D+ AL IA++S GS+RDAEM LDQ
Sbjct: 509 HIILSRCQKFFFPKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQ 568
Query: 517 LSLLGKKIKLSLVHELTGIVSDDELL 542
LSLLG++I LSLV EL +S LL
Sbjct: 569 LSLLGQRISLSLVQELVRYLSSLILL 594
>ref|NP_681922.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
elongatus BP-1] gi|22294855|dbj|BAC08684.1| DNA
polymerase III gamma and tau subunits
[Thermosynechococcus elongatus BP-1]
Length = 603
Score = 204 bits (518), Expect = 1e-50
Identities = 121/358 (33%), Positives = 191/358 (52%), Gaps = 8/358 (2%)
Query: 295 TPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAA 354
T L K+RP FSDLVGQ + +L A+ + IA YLF GPRGTGKTS++RI A +
Sbjct: 2 TYEPLHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKS 61
Query: 355 LNCL--SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSR 412
LNCL S PCG C C +G S +V E+D+ D ++ L++ A P+ R
Sbjct: 62 LNCLRSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIEKAQFAPVQCR 121
Query: 413 FKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVK 472
+KV++IDEC +L + +L LE VVF++ T D ++ + +SR Q + F ++
Sbjct: 122 YKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIP 181
Query: 473 DADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHEL 532
++ L+ I +E +D + AL +A S G +RDAE +LDQLSL ++I + V +L
Sbjct: 182 LGEMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQL 241
Query: 533 TGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDG 592
TG V + +L LL D + + R+L+ PL ++ LA+L D+L K V
Sbjct: 242 TGAVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAKTVPQ 301
Query: 593 GSEVRSKFSGRY-----TSEA-DLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL 644
++ + + + +EA ++++ A L E Q++ S WL +++L L
Sbjct: 302 RRDLVALTAETWQALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGL 359
>gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33241267|ref|NP_876209.1| DNA polymerase III
gamma/tau subunit [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 559
Score = 200 bits (509), Expect = 2e-49
Identities = 149/547 (27%), Positives = 266/547 (48%), Gaps = 34/547 (6%)
Query: 294 ETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAA 353
+T + L K+RP F DLVGQ+ +V +L A+ IA YLF GPRGTGKTS++RI A
Sbjct: 3 KTYQPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILAR 62
Query: 354 ALNCLSVEGQK--PCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISS 411
+LNC E PC C C G + ++ E+D+ D ++ L++ + P+ +
Sbjct: 63 SLNCQQSEKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIERSQFAPVQA 122
Query: 412 RFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKV 471
R+KV++IDEC +L + +L LE VFV+ T D +L ++ +SR Q + F ++
Sbjct: 123 RWKVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFRRI 182
Query: 472 KDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHE 531
+ L I +E ++ DQ +++ IA +S G +RDAE +LDQLSLL I L + E
Sbjct: 183 PITSLTSHLTTIASKEKIEIDQESINLIAQRSEGGLRDAESLLDQLSLLKPPINLQSIWE 242
Query: 532 LTGIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVD 591
L G V +++L+ L +S D + + R+L + P+ ++ L + D++ K +
Sbjct: 243 LLGEVPENDLIILTSSLISQDPISLLKTCRKLFDNGKEPISILQGLTATLRDLVLIKSLP 302
Query: 592 GG------SEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLS 645
S+ + + +SE +L ++ + L +E Q+R S WL V LL L
Sbjct: 303 DQPSLCSLSKQSQETLTKISSELELDRILYWQKYLKGSESQIRFSLQPRLWLEVLLLGLL 362
Query: 646 SVDYPSVDVNDTKLCLREQSM--------EHLATGQC--GDKSYRLGVQEDH---KGTLD 692
S P++ ++E + +H+ Q D+S R V D+ K L
Sbjct: 363 S--NPNISEKKASKNIQEVKVNANNTLNNDHVIEKQILNTDESVRQEVTADNEQSKSGLL 420
Query: 693 AIWYKATEICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLI 752
+ W + + + L ++ +L++L ++ + ++I+E + + + +I
Sbjct: 421 SQWEQILSQIELPSTRMLLSQQARLTNL--TKNQAEISISE------NWLGMIQSRKNII 472
Query: 753 ASSLQFILGCNIELRITYEPRASDSKYA---KLKRSSFSIFSCSRRAQQKSLSSNGSESD 809
+++ LG NIEL + + + + K + +I + + L++N + S
Sbjct: 473 QKAIRKCLGENIELSLIQQSKLNTPSIEVDDKNLLTEKNIKDRNLKLDSNKLNNNNTSSK 532
Query: 810 YADHVSQ 816
D +S+
Sbjct: 533 LNDVISE 539
>ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421] gi|35212174|dbj|BAC89550.1| DNA polymerase III
gamma and tau subunits [Gloeobacter violaceus PCC 7421]
Length = 632
Score = 200 bits (509), Expect = 2e-49
Identities = 114/352 (32%), Positives = 185/352 (52%), Gaps = 6/352 (1%)
Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
L K+RP F D+VGQ +V +L A+ G IA YLF G RGTGKT+ +R+ A ALNC+
Sbjct: 6 LHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNCI 65
Query: 359 SVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFII 418
PCG C +C+ +G + +V E+D+ D ++ L++ A P+ SR KV+I+
Sbjct: 66 HGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIERAQFAPVQSRQKVYIL 125
Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
DE +L + + L LE HV FV+ T D K+ + +SR Q + F ++ D+
Sbjct: 126 DEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTDMVK 185
Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSD 538
LE+I +E +D + A++ +A + G +RDAE +LDQL+LL I + +L G V +
Sbjct: 186 HLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQLALLEGTIGAERIWQLVGAVPE 245
Query: 539 DELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRS 598
ELL + + + D++ + + R L+ S PLQ++ L D+L ++ +
Sbjct: 246 RELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPDRRDLVA 305
Query: 599 KFSGRYTSEADLQKLSRAVRILS------EAEKQLRISKNQTTWLTVALLQL 644
+ + + K ++L+ +AE Q++ S WL V LL L
Sbjct: 306 VTAASWQQMCERAKTLSIPQLLALQERLRQAEPQIKTSTQPRLWLEVGLLGL 357
>ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase
[Crocosphaera watsonii WH 8501]
Length = 687
Score = 199 bits (507), Expect = 3e-49
Identities = 118/354 (33%), Positives = 189/354 (53%), Gaps = 8/354 (2%)
Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
L K+RP +F+DLVGQ + +L AI+ IA YLF GPRGTGKTS++RI A +LNCL
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 359 SVEGQ--KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
+VE PCG C C G + +V E+D+ D ++ +++ + P+ R+KV+
Sbjct: 67 AVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIERSQFAPVQCRYKVY 126
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
+IDEC +L + +L LE E V+FV+ T D ++ + +SR Q + + ++ +
Sbjct: 127 VIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLEAM 186
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIV 536
L I +E ++ + AL +A + G +RDAE +LDQLSLL I V +L G V
Sbjct: 187 VSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVGAV 246
Query: 537 SDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEV 596
+ +LL+LL S++ + R+LM PL ++ LA +++L K S++
Sbjct: 247 PERDLLSLLKAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPERSDL 306
Query: 597 RSKFSGRY------TSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL 644
+ S + ++ + + R + L E+E QL+ + WL V LL L
Sbjct: 307 VAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
gi|25534201|pir||AG2535 DNA polymerase III gamma and tau
chains [imported] - Nostoc sp. (strain PCC 7120) plasmid
pCC7120beta gi|17134655|dbj|BAB77213.1| DNA polymerase
III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 429
Score = 197 bits (500), Expect = 2e-48
Identities = 115/357 (32%), Positives = 194/357 (54%), Gaps = 10/357 (2%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
R L +K+RP S+++GQ +VR+L+ AI+ IA YLF GP+GTGKTS +RI A +LN
Sbjct: 3 RPLHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLN 62
Query: 357 CLSVEGQ--KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFK 414
C S KPCG C C + S +V E+D+ + + ++ L+ P+ SRFK
Sbjct: 63 CQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRFK 122
Query: 415 VFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDA 474
+FIIDEC L +++W +L +E+ HVVF+ T +L K+P + VSR Q + F +V +
Sbjct: 123 IFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPVS 182
Query: 475 DIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLG-KKIKLSLVHELT 533
+A LEKI +E ++ +A+ +A + G +RD+ +LDQL+LLG ++I + V EL+
Sbjct: 183 LVASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWELS 242
Query: 534 GIVSDDELLNLLDLALSSDTSNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGG 593
G + + +LL + + + + + + ++ + S P + + L N + D+L K G
Sbjct: 243 GTIPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCKTNPNG 302
Query: 594 SEVRSKFSGRYTSEADLQKL------SRAVRILSEAEKQLRISKNQTTWLTVALLQL 644
+ + + +L A+ IL A + L ++ WL L+++
Sbjct: 303 RHLTQLEQDTWEELVSISQLWNIDQIRNAIAILM-ARQSLMRDEDAHLWLEATLIEI 358
>ref|ZP_00328132.1| COG2812: DNA polymerase III, gamma/tau subunits [Trichodesmium
erythraeum IMS101]
Length = 695
Score = 196 bits (497), Expect = 4e-48
Identities = 116/355 (32%), Positives = 193/355 (53%), Gaps = 10/355 (2%)
Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
L K+RP +F+DLVGQ+V+ ++L AI IA YLF GPRGTGKTS++R+ A +LNCL
Sbjct: 6 LHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNCL 65
Query: 359 SVEGQ--KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
S + PCG C CV G + +V E+D+ D ++ L++ + P+ R+KV+
Sbjct: 66 SYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIERSQFAPVQCRYKVY 125
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
+IDE +L + +L LE + VVF++ T D ++ + +SR Q + F ++ +
Sbjct: 126 VIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAM 185
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIV 536
L I +EE +D A+ IA + G +RDAE +LDQLSLL +I + V +L G V
Sbjct: 186 VKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLAGEITVERVWDLVGAV 245
Query: 537 SDDELLNLLDLALSSDTSNTVIR-ARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSE 595
+ +L+ L++ A+++D S V++ R++M P+ ++ LA D+L K
Sbjct: 246 PERDLMVLVE-AIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTAPTSKN 304
Query: 596 VRSKFSG------RYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQL 644
+ + +++ + D+ + + L +E Q++ + WL V LL L
Sbjct: 305 LVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVTLLGL 359
>ref|ZP_00160621.2| COG2812: DNA polymerase III, gamma/tau subunits [Anabaena
variabilis ATCC 29413]
Length = 650
Score = 194 bits (494), Expect = 9e-48
Identities = 121/372 (32%), Positives = 194/372 (51%), Gaps = 14/372 (3%)
Query: 299 LSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCL 358
L K+RP SF++LVGQ + +L AI IA YLF GPRGTGKTS++RI A +LNCL
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 359 SVEGQ--KPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
+ + +PCG+C C G S +V E+D+ D ++ L++ A P+ R+KV+
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEKAQFAPVQCRYKVY 125
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
+IDEC +L + + +L LE +HVVFV+ T D ++ + +SR Q + F +++ +
Sbjct: 126 VIDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAM 185
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIV 536
L I +E ++ A+ +A S G +RDAE +LDQL+LL ++ V +L G V
Sbjct: 186 VKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVGSV 245
Query: 537 SDDELLNLLDLALSSDTSNTVI-RARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSE 595
S+ +LL LL A++ D V+ R+++ PL ++ LA D+L K
Sbjct: 246 SEQDLLVLL-AAIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKTAPNRHN 304
Query: 596 VRSKFSGRYTSEAD------LQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDY 649
+ + + + + + + + L EAE Q++ + WL V LL L
Sbjct: 305 LVACTQQTWNALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGL----L 360
Query: 650 PSVDVNDTKLCL 661
PS + + L
Sbjct: 361 PSASIQPAAIAL 372
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,488,313,355
Number of Sequences: 2540612
Number of extensions: 61129130
Number of successful extensions: 175593
Number of sequences better than 10.0: 934
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 174218
Number of HSP's gapped (non-prelim): 1079
length of query: 919
length of database: 863,360,394
effective HSP length: 137
effective length of query: 782
effective length of database: 515,296,550
effective search space: 402961902100
effective search space used: 402961902100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0174.3