BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0173a.1
(217 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 104 2e-21
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 86 6e-16
gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cul... 85 2e-15
gb|AAX92750.1| retrotransposon protein, putative, unclassified [... 82 1e-14
gb|AAS82603.1| putative glycerol 3-phosphate permease [Zea mays] 81 2e-14
emb|CAD40177.2| OSJNBa0061A09.16 [Oryza sativa (japonica cultiva... 80 3e-14
emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultiva... 80 4e-14
gb|AAP53062.1| putative retroelement [Oryza sativa (japonica cul... 80 5e-14
ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (j... 80 5e-14
emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar... 80 5e-14
gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cult... 80 5e-14
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 79 7e-14
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 79 7e-14
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 79 9e-14
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 79 9e-14
emb|CAB72467.1| putative protein [Arabidopsis thaliana] gi|11358... 79 9e-14
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 79 9e-14
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 77 3e-13
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 77 4e-13
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 77 4e-13
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 104 bits (260), Expect = 2e-21
Identities = 58/134 (43%), Positives = 77/134 (57%)
Query: 84 GDGF*KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMK 143
G F K+ + S L FT EEI E V +CD +A GP GFNF F + W++IK D+ K
Sbjct: 280 GLNFNKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYK 339
Query: 144 LFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVM 203
+ +F+ G L G N FIALIPK + + +RPIS+ G +Y +IAK L R VM
Sbjct: 340 IVEDFWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVM 399
Query: 204 PYLLSWNQFSFTKG 217
+L+ Q SF KG
Sbjct: 400 DHLIGPYQSSFIKG 413
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411174|pir||H84469 hypothetical protein
At2g05550 [imported] - Arabidopsis thaliana
Length = 977
Score = 86.3 bits (212), Expect = 6e-16
Identities = 48/128 (37%), Positives = 72/128 (55%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
KV EDK ML T EEI VV + +++LGP G+ F++ WDII ++ + F
Sbjct: 555 KVAEEDKGMLTTEVTKEEIKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSF 614
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+E G L +G+N +ALIPKK + YRPIS IY +I+K + R ++P ++
Sbjct: 615 FEKGFLPKGVNSTILALIPKKLEEIEMKDYRPISCCNVIYKVISKIIANRLKRLLPNFIA 674
Query: 209 WNQFSFTK 216
NQ +F +
Sbjct: 675 GNQSAFVQ 682
>gb|AAP53436.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533694|ref|NP_921149.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19920114|gb|AAM08546.1| Putative retroelement [Oryza
sativa]
Length = 586
Score = 84.7 bits (208), Expect = 2e-15
Identities = 50/132 (37%), Positives = 72/132 (53%)
Query: 85 DGF*KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKL 144
+G +V EDK L F+ EE+ +VV NRA GP GF F+ +FW IIK +++ L
Sbjct: 2 EGVTQVSKEDKVELTKPFSLEEVKKVVFEMRQNRAPGPDGFPAEFYVKFWGIIKFELLDL 61
Query: 145 FVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMP 204
+F+ VE LN + L+PK K E + +RPI L + +I K L R +M
Sbjct: 62 INDFHNGFLEVERLNYGIVTLVPKTKDAEQIQKFRPICLLNVSFKIITKVLMNRLDRIMT 121
Query: 205 YLLSWNQFSFTK 216
Y++S NQ +F K
Sbjct: 122 YIISKNQTAFLK 133
>gb|AAX92750.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1319
Score = 82.0 bits (201), Expect = 1e-14
Identities = 45/129 (34%), Positives = 67/129 (51%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
+V + L F+ EE+ E + A + N+A G GF F+++FWD+IK D+M LF EF
Sbjct: 890 QVSQAENDFLTAPFSEEEVKEAIFAMEHNKAPGLDGFPAEFYQKFWDVIKHDLMNLFNEF 949
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+ + GLN + L+PK K + YRPI L Y + K T R V +L++
Sbjct: 950 HTGSLPIFGLNFGVLTLVPKVKEANQIQQYRPICLLNVSYKIFTKVATNRISSVANHLVN 1009
Query: 209 WNQFSFTKG 217
Q F +G
Sbjct: 1010 PTQTVFMRG 1018
>gb|AAS82603.1| putative glycerol 3-phosphate permease [Zea mays]
Length = 1279
Score = 81.3 bits (199), Expect = 2e-14
Identities = 42/121 (34%), Positives = 67/121 (54%)
Query: 96 SMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLV 155
S LE F+S EI +++ N++ GP GFN F +++W +I D LF +F+E +
Sbjct: 43 SELEQPFSSREIDQIIACLPSNKSPGPDGFNIDFVKKYWPVIAPDFYDLFNKFFEGSLCM 102
Query: 156 EGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFT 215
+N ++ LIPK ++V YRPISL + ++ K L R +V+ L+ NQ+ F
Sbjct: 103 HSINGSYVTLIPKNGSPDSVGDYRPISLLNTSVKVLTKILANRLQLVITKLVHQNQYGFI 162
Query: 216 K 216
K
Sbjct: 163 K 163
>emb|CAD40177.2| OSJNBa0061A09.16 [Oryza sativa (japonica cultivar-group)]
gi|50921883|ref|XP_471302.1| OSJNBa0061A09.16 [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 80.5 bits (197), Expect = 3e-14
Identities = 48/115 (41%), Positives = 60/115 (51%)
Query: 102 FTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLK 161
F+ EI EVV +RA GP GFN F + W II+ D L +F E +E LN
Sbjct: 465 FSISEIDEVVKRMPTDRAPGPDGFNGCFIKSCWPIIRQDFYTLCAQFCEGNLALESLNRS 524
Query: 162 FIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTK 216
FI L+PKK E V+ YRPISL L+ K L R V+ L+ NQ+ F K
Sbjct: 525 FITLVPKKSTPERVNDYRPISLQSVALKLLTKVLADRLQSVITELIHQNQYGFIK 579
>emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa (japonica cultivar-group)]
Length = 1189
Score = 80.1 bits (196), Expect = 4e-14
Identities = 52/125 (41%), Positives = 68/125 (53%), Gaps = 1/125 (0%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D + L FT EE+ + + ++A GP GF FF+ W+IIKDD++ +F Y
Sbjct: 431 DLATLGEPFTEEEVHKAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRC 490
Query: 154 L-VEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
+ LN I LIPKK E+VS YRPISL SI + AK L R M L+S NQ
Sbjct: 491 AHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQS 550
Query: 213 SFTKG 217
+F KG
Sbjct: 551 AFIKG 555
>gb|AAP53062.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532946|ref|NP_920775.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 365
Score = 79.7 bits (195), Expect = 5e-14
Identities = 42/124 (33%), Positives = 68/124 (53%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+ ML FT EE+ + +I + N+A GP GF F++ FW++IK+D+M +F EF+E
Sbjct: 16 ENEMLIKIFTEEEVKQAIIQMEQNKAPGPNGFPVEFYQVFWEVIKEDLMAIFTEFHEGIL 75
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
+ LN I L+PK+K + Y PI L + + K +T R +V ++ +Q +
Sbjct: 76 PLHSLNFVIITLLPKQKEPRQIKQYIPICLLNVSFKIFPKVMTNRIALVAQKVIRSSQTA 135
Query: 214 FTKG 217
F G
Sbjct: 136 FLPG 139
>ref|NP_912383.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29893671|gb|AAP06925.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 870
Score = 79.7 bits (195), Expect = 5e-14
Identities = 52/125 (41%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D + L FT EE+ + ++A GP GF FF+ W+IIKDD++ +F Y
Sbjct: 431 DLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRC 490
Query: 154 L-VEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
+ LN I LIPKK E+VS YRPISL SI + AK L R M L+S NQ
Sbjct: 491 AHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQS 550
Query: 213 SFTKG 217
+F KG
Sbjct: 551 AFIKG 555
>emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa (japonica cultivar-group)]
gi|50926570|ref|XP_473232.1| OSJNBa0038O10.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1045
Score = 79.7 bits (195), Expect = 5e-14
Identities = 51/125 (40%), Positives = 70/125 (55%), Gaps = 1/125 (0%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D S LE F+ +EI + +++ GP G+ IFF+ WDI+K+D+ +F +
Sbjct: 381 DLSTLEEPFSEQEIHRAIKEMPVDKSPGPDGYTGIFFKSCWDIVKEDVSLVFNSIFNLRC 440
Query: 154 LVEGL-NLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
GL NL I LIPKK+ E+VS YRPISL SI + +K L R M L+S NQ
Sbjct: 441 ASLGLLNLANIVLIPKKEGAESVSDYRPISLIHSIAKIFSKLLALRLRPHMRSLVSINQS 500
Query: 213 SFTKG 217
+F KG
Sbjct: 501 AFIKG 505
>gb|AAU44186.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1023
Score = 79.7 bits (195), Expect = 5e-14
Identities = 52/125 (41%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D + L FT EE+ + ++A GP GF FF+ W+IIKDD++ +F Y
Sbjct: 265 DLATLGEPFTEEEVHRAIKEMPADKAPGPDGFTGAFFKVCWEIIKDDILLVFSSIYNLRC 324
Query: 154 L-VEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
+ LN I LIPKK E+VS YRPISL SI + AK L R M L+S NQ
Sbjct: 325 AHLNLLNSANIVLIPKKDGAESVSDYRPISLIHSIAKIFAKMLALRLRPHMHELISVNQS 384
Query: 213 SFTKG 217
+F KG
Sbjct: 385 AFIKG 389
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7487278|pir||T00530 hypothetical protein
At2g19100 [imported] - Arabidopsis thaliana
Length = 1447
Score = 79.3 bits (194), Expect = 7e-14
Identities = 42/123 (34%), Positives = 70/123 (56%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+ +L T+EEI +V+ + +++ GP GF FF+ W+I+ ++ + F+ G
Sbjct: 853 EHELLTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEILGNEFILAIQSFFAKGF 912
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +G+N +ALIPKKK + + YRPIS IY +I+K + R +V P ++ NQ +
Sbjct: 913 LPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIANRLKLVPPKFIAGNQSA 972
Query: 214 FTK 216
F K
Sbjct: 973 FVK 975
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana] gi|7488318|pir||T01191
RNA-directed DNA polymerase homolog F21E10.5 -
Arabidopsis thaliana
Length = 928
Score = 79.3 bits (194), Expect = 7e-14
Identities = 43/123 (34%), Positives = 70/123 (55%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
DK ML ++EEI +VV + +++ GP G+ F++ W+II + + F+ G
Sbjct: 333 DKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGF 392
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +G+N +ALIPKKK + + YRPIS +Y +I+K + R +V+P + NQ +
Sbjct: 393 LPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSA 452
Query: 214 FTK 216
F K
Sbjct: 453 FVK 455
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488323|pir||T02730 RNA-directed DNA
polymerase homolog T9I4.6 - Arabidopsis thaliana
Length = 1529
Score = 79.0 bits (193), Expect = 9e-14
Identities = 44/128 (34%), Positives = 68/128 (52%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
+ V D+++L T EEI +V+ A N++ GP G+ FF+ W + D + F
Sbjct: 737 RCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSF 796
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+ G L +GLN +ALIPKK + YRPIS +Y +I+K L R +++P +
Sbjct: 797 FVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFIL 856
Query: 209 WNQFSFTK 216
NQ +F K
Sbjct: 857 QNQSAFVK 864
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412166|pir||H84629 hypothetical protein
At2g23880 [imported] - Arabidopsis thaliana
Length = 1216
Score = 79.0 bits (193), Expect = 9e-14
Identities = 42/124 (33%), Positives = 68/124 (53%)
Query: 93 EDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFG 152
+D +L T EEI +V+ + +++ GP G+ F++ W+II D+++ F+ G
Sbjct: 165 DDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKG 224
Query: 153 KLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
L +G+N +ALIPKKK + YRPIS +Y I+K L R ++P + NQ
Sbjct: 225 FLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQS 284
Query: 213 SFTK 216
+F K
Sbjct: 285 AFVK 288
>emb|CAB72467.1| putative protein [Arabidopsis thaliana] gi|11358077|pir||T47440
hypothetical protein T18B22.50 - Arabidopsis thaliana
Length = 762
Score = 79.0 bits (193), Expect = 9e-14
Identities = 42/120 (35%), Positives = 69/120 (57%)
Query: 97 MLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVE 156
ML ++EEI +V+ + +++ GP GF FF+E W+I+ + + F+ G L +
Sbjct: 1 MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60
Query: 157 GLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTK 216
G+N +ALIPKK + + YRPIS +Y +I+K L R +++P ++ NQ SF K
Sbjct: 61 GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 79.0 bits (193), Expect = 9e-14
Identities = 45/124 (36%), Positives = 65/124 (52%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+K M + EI E + A D N+A GP GF F+++FW++IK D++ LF EF+
Sbjct: 656 NKKMSALRRHLREIKEAIFAMDHNKAPGPDGFPVEFYQKFWEVIKHDLLNLFNEFHSGSL 715
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
+ GLN I LIPK + + YRPI L Y + K T R V L++ Q +
Sbjct: 716 PIFGLNFGVITLIPKVEEANRIQQYRPICLLNVSYKIFTKVATNRISSVADNLVNPTQTA 775
Query: 214 FTKG 217
F +G
Sbjct: 776 FMRG 779
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 77.4 bits (189), Expect = 3e-13
Identities = 42/133 (31%), Positives = 70/133 (52%)
Query: 85 DGF*KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKL 144
D +V +E+ + L FT EE+ V + N+A GP GF F++ FW++IK+D+M +
Sbjct: 1148 DDIPQVSMEENTFLTKEFTEEEVKHAVFQMEHNKAPGPDGFPAEFYQVFWEVIKEDLMAV 1207
Query: 145 FVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMP 204
F +F+ + LN I L+PK K + + YR I L + + K + R +V
Sbjct: 1208 FRDFHSGELPLHRLNFGIITLLPKNKEAKQIQQYRRICLLNVSFKVFTKVMANRIALVAQ 1267
Query: 205 YLLSWNQFSFTKG 217
++ +Q +F KG
Sbjct: 1268 KVIRPSQIAFLKG 1280
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|7488317|pir||T01610 RNA-directed DNA polymerase
homolog At2g18820 - Arabidopsis thaliana
Length = 1412
Score = 76.6 bits (187), Expect = 4e-13
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
+ + ++++L T E+ +V + N++ GP G+ FFRE W +I ++ F
Sbjct: 706 RYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSF 765
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+ +G L +GLN +ALIPK+ + + YRPIS +Y I+K L R ++P ++
Sbjct: 766 FTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIA 825
Query: 209 WNQFSF 214
NQ +F
Sbjct: 826 PNQSAF 831
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410913|pir||B84426 hypothetical protein
At2g01550 [imported] - Arabidopsis thaliana
Length = 1449
Score = 76.6 bits (187), Expect = 4e-13
Identities = 41/123 (33%), Positives = 69/123 (55%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+K ML + +++EI + + +++ GP G+ F++ WDII + + F+E G
Sbjct: 860 EKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGF 919
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +G+N +ALIPKK + + YRPIS IY +I+K + R V+P ++ NQ +
Sbjct: 920 LPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSA 979
Query: 214 FTK 216
F K
Sbjct: 980 FVK 982
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.346 0.159 0.520
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,065,214
Number of Sequences: 2540612
Number of extensions: 11945094
Number of successful extensions: 46017
Number of sequences better than 10.0: 426
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 45580
Number of HSP's gapped (non-prelim): 441
length of query: 217
length of database: 863,360,394
effective HSP length: 123
effective length of query: 94
effective length of database: 550,865,118
effective search space: 51781321092
effective search space used: 51781321092
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0173a.1