BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0172.5
(1213 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 1710 0.0
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 1697 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 1697 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 1695 0.0
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 1692 0.0
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 1690 0.0
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 1184 0.0
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 952 0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 949 0.0
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 948 0.0
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 946 0.0
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 943 0.0
gb|AAL35396.1| Opie2a pol [Zea mays] 911 0.0
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 901 0.0
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 894 0.0
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 875 0.0
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 862 0.0
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 850 0.0
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 803 0.0
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 803 0.0
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 1710 bits (4428), Expect = 0.0
Identities = 838/1225 (68%), Positives = 998/1225 (81%), Gaps = 26/1225 (2%)
Query: 1 ISDEELAEAYKLLYTKWKEACIYGQQQKKQVVELQAEKK-------KLTEEVALLNSKME 53
I+ +ELA Y+ L K ++ Q KK + L+AEK+ KL EV LNSK+E
Sbjct: 366 ITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLNSKLE 425
Query: 54 GMTKSIRMMSKSTDILDEILDVGKSAGDKTGIGFDYRAVNKASQNMTKEHVQIGRQSNVK 113
MTKSI+M++K +D+LDZ+L +GK G++ G+GF++++ + + E V +
Sbjct: 426 NMTKSIKMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSAGRTTMT---EFVPAKNSTGAT 482
Query: 114 MWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKS 173
M R + H Q + + WRCHYCG++GHI+P+C+ L+G+P + S
Sbjct: 483 MSQHRSR----HHGTQQKRSKRKKWRCHYCGKYGHIKPFCYHLHGHP-----HHGTQGSS 533
Query: 174 PG-KSRWKPKVNATALIAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTF 232
G K W PK +L+ HTSLRAS+KEDWY DSGCSRHMTGVK +L ++P + S+VTF
Sbjct: 534 SGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTF 593
Query: 233 GDGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNK 292
GDG+KGKI G+GKL G P+L+ VLLV+GLT NLISISQLCD+G V F +S C+V N+
Sbjct: 594 GDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNE 653
Query: 293 NKDVLMRGARSKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEA 352
+VLM+G+RSKDNCY+WT + + S+ CL SKEDEV+IWHQ+ GHL+L+ MK+I+ + A
Sbjct: 654 KSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGA 713
Query: 353 VRGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKR 412
VRGIP LKI+EG++CGECQIGKQVKMSHQKLQH TTS+VLELLHMDLMGPMQVESLGGKR
Sbjct: 714 VRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKR 773
Query: 413 YVFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFS 472
Y +V VDDFSRFTWV F++EKSDTFEVFKEL L++QREK I +IRSDHG+EFEN +F+
Sbjct: 774 YAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFT 833
Query: 473 EFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIH 532
EFC+SEGI HEFSA ITPQQNG+VERKNRTLQE+AR MLHAK LPY+ WAEA+NTACYIH
Sbjct: 834 EFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIH 893
Query: 533 NRVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSG 592
NRVT+R+G T YE+WKG+KPTVK+FH+FGS CYIL+DRE RRK+DPKS+ GIFLGYS
Sbjct: 894 NRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYST 953
Query: 593 NSRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHDEDDLPYECTNVEPDEPAIQFPNEQ 652
NSRAYRV+N RT+ +MESINVVVDD + R E+D+ NV + +
Sbjct: 954 NSRAYRVFNSRTRTVMESINVVVDDLTPARKKDV--EEDVRTSGDNVADTAKSAENAENS 1011
Query: 653 ENTVSQPPL--ATKEPSIRVQKIHPKENIIGDLNDGVITRSRDL--VSNACFISKVEPKN 708
++ +P + K PSIR+QK+HPKE IIGD N GV TRSR++ VSN+CF+SK+EPKN
Sbjct: 1012 DSATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKN 1071
Query: 709 VKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKS 768
VKEALTDEFWI +MQEEL QFKRNEVWELVPRP+ NV+GTKWIF+NK++E G +TRNK+
Sbjct: 1072 VKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKA 1131
Query: 769 RLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEV 828
RLVAQGY+QIEG+DF ETFAPVARLESIRLLLGVAC+LKF+LYQMDVKSAFLNGYLNEE
Sbjct: 1132 RLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEA 1191
Query: 829 YVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKK 888
YVEQPKGFVDP+ PDHVYRLKKALYGLKQAPRAWYERLTEFL GY KGGIDKTLFVK+
Sbjct: 1192 YVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQ 1251
Query: 889 NGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLF 948
+ LM+AQIYVDDIVFGGMSN+M+ FV+QM+SEFEMSLVGELTYFLGLQVKQMED++F
Sbjct: 1252 DAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIF 1311
Query: 949 ITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASR 1008
++QSKYAK IVKKFG+ENA HKRTPA TH+KL+KDE GT VD SLYRSMIGSLLYLTASR
Sbjct: 1312 LSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASR 1371
Query: 1009 PDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAG 1068
PDIT+AVGVCARYQA PK SHL QVKRI+KY++GTSDYGI+Y H + S L GYCDADWAG
Sbjct: 1372 PDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSGSMLVGYCDADWAG 1431
Query: 1069 SADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYN 1128
SADDRKSTSGGCF+L NNLISWFSKKQNCVSLSTAEAEYIAAGSSC+QL+WMKQMLKEYN
Sbjct: 1432 SADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYN 1491
Query: 1129 VQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLAD 1188
V+QDVMTL+CDN+SAINISKNP+QHSRTKHIDIRHH+IRELV+D +TLEHV TE+Q+AD
Sbjct: 1492 VEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVITLEHVDTEEQIAD 1551
Query: 1189 IFTKALDATQFEKLRQLLGICLFEE 1213
IFTKALDA QFEKLR LGICL EE
Sbjct: 1552 IFTKALDAKQFEKLRGKLGICLLEE 1576
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1697 bits (4396), Expect = 0.0
Identities = 837/1230 (68%), Positives = 997/1230 (81%), Gaps = 36/1230 (2%)
Query: 1 ISDEELAEAYKLLYTKWKEACIYGQQQKKQVVELQAEKK-------KLTEEVALLNSKME 53
I+ +ELA +Y+ L K ++ Q KK + +L+AEK+ +L EV LNSK+E
Sbjct: 365 ITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEISELKGEVGFLNSKLE 424
Query: 54 GMTKSIRMMSKSTDILDEILDVGKSAGDKTGIGFDYRAVNKASQNMTKEHVQIGRQSNVK 113
M KSI+M++K +D LDE+L +GK+AG++ G+GF+ + + + E V ++
Sbjct: 425 TMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKFAGRTTMT---EFVPAKNRTGTT 481
Query: 114 MWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKS 173
M Q H Q + + WRCHYCG++GHI+P+C+ L+G+P S KK
Sbjct: 482 M----SQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKM 537
Query: 174 PGKSRWKPKVNATALIAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFG 233
W PK A +L+ HTSLRAS+KEDWY DSGCSRHMTGVK +L ++P + S+VTFG
Sbjct: 538 ----MWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFG 593
Query: 234 DGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKN 293
DG+KGKI G+GKL G P+L+ VLLV+GLTANLISISQLCD+G V F +S C+V N+
Sbjct: 594 DGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEK 653
Query: 294 KDVLMRGARSKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAV 353
+VLM+G+RSKDNCY+WT + T S+ CL SKEDEVRIWHQ+ GHL+L+ MK+I+ + AV
Sbjct: 654 SEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAV 713
Query: 354 RGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRY 413
RGIP LKI+EG++CGECQIGKQVKMSHQKL+H TTS+VLELLHMDLMGPMQVESLGGKRY
Sbjct: 714 RGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRY 773
Query: 414 VFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSE 473
+V VDDFSRFTWV F++EKS+TFEVFKEL L++QREK I +IRSDHG+EFEN +F+E
Sbjct: 774 AYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTE 833
Query: 474 FCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHN 533
FC+SEGI HEFSA ITPQQNG+VERKNRTLQE+AR MLHAK LPY+ WAEA+NTACYIHN
Sbjct: 834 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHN 893
Query: 534 RVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGN 593
RVT+R+G T YE+WKG+KP+VK+FH+FGS CYIL+DRE RRK+DPKS+ GIFLGYS N
Sbjct: 894 RVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTN 953
Query: 594 SRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHDE--------DDLPYECTNVEPDEPA 645
SRAYRV+N RT+ +MESINVVVDD S R ++ D N E + A
Sbjct: 954 SRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTLGDNVADAAKSGENAENSDSA 1013
Query: 646 IQFPNEQENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSRD--LVSNACFISK 703
E+ ++QP K S R+QK+HPKE IIGD N GV TRSR+ +VSN+CF+SK
Sbjct: 1014 TD-----ESNINQPD---KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 1065
Query: 704 VEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNV 763
+EPKNVKEALTDEFWI +MQEEL QFKRNEVWELVPRP+ NV+GTKWIF+NK++E G +
Sbjct: 1066 IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVI 1125
Query: 764 TRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGY 823
TRNK+RLVAQGY+QIEG+DF ETFAPVARLESIRLLLGVAC+LKF+LYQMDVKSAFLNGY
Sbjct: 1126 TRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGY 1185
Query: 824 LNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKT 883
LNEEVYVEQPKGF DP+ PDHVYRLKKALYGLKQAPRAWYERLTEFL GY KGGIDKT
Sbjct: 1186 LNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 1245
Query: 884 LFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQM 943
LFVK++ LM+AQIYVDDIVFGGMSN+M+ FV+QM+SEFEMSLVGELTYFLGLQVKQM
Sbjct: 1246 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1305
Query: 944 EDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLY 1003
ED++F++QS+YAK IVKKFG+ENA HKRTPA TH+KL+KDE GT VD SLYRSMIGSLLY
Sbjct: 1306 EDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLY 1365
Query: 1004 LTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCD 1063
LTASRPDIT+AVGVCARYQA PK SHL QVKRI+KY++GTSDYGI+Y H +N L GYCD
Sbjct: 1366 LTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCD 1425
Query: 1064 ADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQM 1123
ADWAGSADDRKSTSGGCF+L NNLISWFSKKQNCVSLSTAEAEYIAAGSSC+QL+WMKQM
Sbjct: 1426 ADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQM 1485
Query: 1124 LKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTE 1183
LKEYNV+QDVMTL+CDN+SAINISKNP+QHSRTKHIDIRHH+IR+LV+D +TL+HV TE
Sbjct: 1486 LKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTE 1545
Query: 1184 KQLADIFTKALDATQFEKLRQLLGICLFEE 1213
+Q+ADIFTKALDA QFEKLR LGICL EE
Sbjct: 1546 EQIADIFTKALDANQFEKLRGKLGICLLEE 1575
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 1697 bits (4394), Expect = 0.0
Identities = 836/1230 (67%), Positives = 998/1230 (80%), Gaps = 38/1230 (3%)
Query: 1 ISDEELAEAYKLLYTKWKEACIYGQQQKKQVVELQAEKK-------KLTEEVALLNSKME 53
I+ +ELA +Y+ L K ++ Q KK + +L+AEK+ +L EV LNSK+E
Sbjct: 365 ITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLE 424
Query: 54 GMTKSIRMMSKSTDILDEILDVGKSAGDKTGIGFDYRAVNKASQNMTKEHVQIGRQSNVK 113
MTKSI+M++K +D LDE+L +GK+AG++ G+GF+ ++ + + E V ++
Sbjct: 425 NMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMT---EFVPAKNRTGAT 481
Query: 114 MWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKS 173
M R + H Q + + WRCHYCG++GHI+P+C+ L+ + Q S
Sbjct: 482 MSQHRSR----HHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHPHHGTQS------SNS 531
Query: 174 PGKSRWKPKVNATALIAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFG 233
K W PK A +L+ HTSLRAS+KEDWY DSGCSRHMTGVK +L ++P + S+VTFG
Sbjct: 532 RKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFG 591
Query: 234 DGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKN 293
DG+KGKI G+GKL G P+L+ VLLV+GLTANLISISQLCD+G V F +S C+V N+
Sbjct: 592 DGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEK 651
Query: 294 KDVLMRGARSKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAV 353
+VLM+G+RSKDNCY+WT + T S+ CL SKEDEVRIWHQ+ GHL+L+ MK+I+ + AV
Sbjct: 652 SEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAV 711
Query: 354 RGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRY 413
RGIP LKI+EG++CGECQIGKQVKMSHQKLQH TTS+VLELLHMDLMGPMQVESLGGKRY
Sbjct: 712 RGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRY 771
Query: 414 VFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSE 473
+V VDDFSRFTWV+F++EKS+TFEVFKEL L++QREK I +IRSDHG+EFEN + +E
Sbjct: 772 AYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRLTE 831
Query: 474 FCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHN 533
FC+SEGI HEFSA ITPQQNG+VERKNRTLQE+AR MLHAK LPY+ WAEA+NTACYIHN
Sbjct: 832 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHN 891
Query: 534 RVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGN 593
RVT+R+G T YE+WKG+KP+VK+FH+FGS CYIL+DRE RRK+DPKS+ GIFLGYS N
Sbjct: 892 RVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTN 951
Query: 594 SRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHDE--------DDLPYECTNVEPDEPA 645
SRAYRV+N RT+ +MESINVVVDD S R ++ D N E + A
Sbjct: 952 SRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSA 1011
Query: 646 IQFPNEQENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSRD--LVSNACFISK 703
E+ ++QP K S R+QK+HPKE IIGD N GV TRSR+ +VSN+CF+SK
Sbjct: 1012 TD-----ESNINQPD---KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 1063
Query: 704 VEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNV 763
+EPKNVKEALTDEFWI +MQEEL QFKRNEVWELVPRP+ NV+GTKWIF+NK++E G +
Sbjct: 1064 IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVI 1123
Query: 764 TRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGY 823
TRNK+RLVAQGY+QIEG+DF ETFAPVARLESIRLLLGVAC+LKF+LYQMDVKSAFLNGY
Sbjct: 1124 TRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGY 1183
Query: 824 LNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKT 883
LNEEVYVEQPKGF DP+ PDHVYRLKKALYGLKQAPRAWYERLTEFL GY KGGIDKT
Sbjct: 1184 LNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 1243
Query: 884 LFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQM 943
LFVK++ LM+AQIYVDDIVFGGMSN+M+ FV+QM+SEFEMSLVGELTYFLGLQVKQM
Sbjct: 1244 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1303
Query: 944 EDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLY 1003
ED++F++QS+YAK IVKKFG+ENA HKRTPA TH+KL+KDE GT VD SLYRSMIGSLLY
Sbjct: 1304 EDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLY 1363
Query: 1004 LTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCD 1063
LTASRPDIT+AVGVCARYQA PK SHL QVKRI+KY++GTSDYGI+Y H +N L GYCD
Sbjct: 1364 LTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCD 1423
Query: 1064 ADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQM 1123
ADWAGSADDRKSTSGGCF+L NNLISWFSKKQNCVSLSTAEAEYIAAGSSC+QL+WMKQM
Sbjct: 1424 ADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQM 1483
Query: 1124 LKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTE 1183
LKEYNV+QDVMTL+CDN+SAINISKNP+QHSRTKHIDIRHH+IR+LV+D +TL+HV TE
Sbjct: 1484 LKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTE 1543
Query: 1184 KQLADIFTKALDATQFEKLRQLLGICLFEE 1213
+Q+ADIFTKALDA QFEKLR LGICL EE
Sbjct: 1544 EQIADIFTKALDANQFEKLRGKLGICLLEE 1573
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1695 bits (4390), Expect = 0.0
Identities = 835/1230 (67%), Positives = 998/1230 (80%), Gaps = 36/1230 (2%)
Query: 1 ISDEELAEAYKLLYTKWKEACIYGQQQKKQVVELQAEKK-------KLTEEVALLNSKME 53
I+ +ELA +Y+ L K ++ Q KK + +L+AEK+ +L EV LNSK+E
Sbjct: 365 ITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNSKLE 424
Query: 54 GMTKSIRMMSKSTDILDEILDVGKSAGDKTGIGFDYRAVNKASQNMTKEHVQIGRQSNVK 113
MTKSI+M++K +D LDE+L +GK+AG++ G+GF+ ++ + + E V ++
Sbjct: 425 NMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMT---EFVPAKNRTGAT 481
Query: 114 MWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKS 173
M R + H Q + + WRCHYCG++GHI+P+C+ L+G+P S KK
Sbjct: 482 MSQHRSR----HHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKM 537
Query: 174 PGKSRWKPKVNATALIAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFG 233
W PK A +L+ HTSLRAS+KEDWY DSGCSRHMTGVK +L ++P + S+VTFG
Sbjct: 538 ----MWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFG 593
Query: 234 DGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKN 293
DG+KGKI G+GKL G P+L+ VLLV+GLTANLISISQLCD+G V F +S C+V N+
Sbjct: 594 DGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEK 653
Query: 294 KDVLMRGARSKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAV 353
+VLM+G+RSKDNCY+WT + T S+ CL SKEDEVRIWHQ+ GHL+L+ MK+I+ + AV
Sbjct: 654 SEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAV 713
Query: 354 RGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRY 413
RGIP LKI+EG++CGECQIGKQVKMSHQKLQH TTS+VLELLHMDLMGPMQVESLGGKRY
Sbjct: 714 RGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRY 773
Query: 414 VFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSE 473
+V VDDFSRFTWV F++EKS TFEVFK+L L++QREK I +IRSDHG+EFEN +F+E
Sbjct: 774 AYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSRFTE 833
Query: 474 FCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHN 533
FC+SEGI HEFSA ITPQQNG+VERKNRTLQE+AR MLHAK LPY+ WAEA+NTACYIHN
Sbjct: 834 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHN 893
Query: 534 RVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGN 593
RVT+R+G T YE+WKG+KP+VK+FH+FGS CYIL+DRE RRK+DPKS+ GIFLGYS N
Sbjct: 894 RVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTN 953
Query: 594 SRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHDE--------DDLPYECTNVEPDEPA 645
SRAYRV+N RT+ +MESINVVVDD S R ++ D N E + A
Sbjct: 954 SRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSA 1013
Query: 646 IQFPNEQENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSRD--LVSNACFISK 703
E+ ++QP K S R+QK+HPKE IIGD N GV TRSR+ +VSN+CF+SK
Sbjct: 1014 TD-----ESNINQPD---KRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 1065
Query: 704 VEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNV 763
+EPKNVKEALTDEFWI +MQEEL QFKRNEVWELVPRP+ NV+GTKWIF+NK++E G +
Sbjct: 1066 IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVI 1125
Query: 764 TRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGY 823
TRNK+RLVAQGY+QIEG+DF ETFAPVARLESIRLLLGVAC+LKF+LYQMDVKSAFLNGY
Sbjct: 1126 TRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGY 1185
Query: 824 LNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKT 883
LNEEVYVEQPKGF DP+ PDHVYRLKKALYGLKQAPRAWYERLTEFL GY KGGIDKT
Sbjct: 1186 LNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 1245
Query: 884 LFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQM 943
LFVK++ LM+AQIYVDDIVFGGMSN+M+ FV+QM+SEFEMSLVGELTYFLGLQVKQM
Sbjct: 1246 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1305
Query: 944 EDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLY 1003
ED++F++QS+YAK IVKKFG+ENA HKRTPA TH+KL+KDE GT VD YRSMIGSLLY
Sbjct: 1306 EDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMIGSLLY 1365
Query: 1004 LTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCD 1063
LTASRPDIT+AVGVCARYQA PK SHL QVKRI+KY++GTSDYGI+Y H ++S L GYCD
Sbjct: 1366 LTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSSMLVGYCD 1425
Query: 1064 ADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQM 1123
ADWAGSADDRKSTSGGCF+L NNLISWFSKKQNCVSLSTAEAEYIAAGSSC+QL+WMKQM
Sbjct: 1426 ADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQM 1485
Query: 1124 LKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTE 1183
LKEYNV+QDVMTL+CDN+SAINISKNP+QHSRTKHIDIRHH+IR+LV+D +TL+HV TE
Sbjct: 1486 LKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTE 1545
Query: 1184 KQLADIFTKALDATQFEKLRQLLGICLFEE 1213
+Q+ADIFTKALDA QFEKLR LGIC+ EE
Sbjct: 1546 EQIADIFTKALDANQFEKLRGKLGICVLEE 1575
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 1692 bits (4382), Expect = 0.0
Identities = 828/1224 (67%), Positives = 993/1224 (80%), Gaps = 24/1224 (1%)
Query: 1 ISDEELAEAYKLLYTKWKEACIYGQQQKKQVVELQAEKK-------KLTEEVALLNSKME 53
I+ +ELA +Y+ L K ++ Q KK + L+AEK+ +L E+ LNSK+E
Sbjct: 339 ITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLE 398
Query: 54 GMTKSIRMMSKSTDILDEILDVGKSAGDKTGIGFDYRAVNKASQNMTKEHVQIGRQSNVK 113
MTKSI+M++K +D+LDE+L +GK+ G++ G+GF++++ + + E V +
Sbjct: 399 NMTKSIKMLNKGSDLLDEVLQLGKNVGNQRGLGFNHKSAGRTTMT---EFVPAKNSTGAT 455
Query: 114 MWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKS 173
M R + H Q + + WRCHYCG++GHI+P+C+ L+G+P S S
Sbjct: 456 MSQHRSR----HHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQS----SSS 507
Query: 174 PGKSRWKPKVNATALIAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFG 233
K W PK +L+ HTSLRAS+KEDWY DSGCSRHMTGVK +L ++P + S+VTFG
Sbjct: 508 GRKMMWVPKHKTVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFG 567
Query: 234 DGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKN 293
DG+KGKI G+GKL G P+L+ VLLV+GLTANLISISQLCD+G V F +S C+V N+
Sbjct: 568 DGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEK 627
Query: 294 KDVLMRGARSKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAV 353
+VLM+G+RSKDNCY+WT + T S+ CL SKEDEV+IWHQ+ GHL+L+ MK+I+ + AV
Sbjct: 628 SEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAV 687
Query: 354 RGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRY 413
RGIP LKI+EG++CGECQIGKQVKMS+QKLQH TTS+VLELLHMDLMGPMQVESLG KRY
Sbjct: 688 RGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRY 747
Query: 414 VFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSE 473
+V VDDFSRFTWV F++EKSDTFEVFKEL L++QREK I +IRSDHG+EFEN +F+E
Sbjct: 748 AYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTE 807
Query: 474 FCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHN 533
FC+SEGI HEFSA ITPQQNG+VERKNRTLQE+AR MLHAK LPY+ WAEA+NTACYIHN
Sbjct: 808 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHN 867
Query: 534 RVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGN 593
RVT+R+G T YE+WKG+KPTVK+FH+ GS CYIL+DRE RRK+DPKS+ GIFLGYS N
Sbjct: 868 RVTLRRGTPTTLYEIWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAGIFLGYSTN 927
Query: 594 SRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHDEDDLPYECTNVEPDEPAIQFPNEQE 653
SRAYRV+N RT+ +MESINVVVDD + R E+D+ NV + + +
Sbjct: 928 SRAYRVFNSRTRTVMESINVVVDDLTPARKKDV--EEDVRTSGDNVADTAKSAENAENSD 985
Query: 654 NTVSQPPL--ATKEPSIRVQKIHPKENIIGDLNDGVITRSRDL--VSNACFISKVEPKNV 709
+ +P + K PSIR+QK+HPKE IIGD N GV TRSR++ +SN+CF+SK+EPKNV
Sbjct: 986 SATDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIISNSCFVSKIEPKNV 1045
Query: 710 KEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSR 769
KEALTDEFWI +MQEEL QFKRNEVWELVPRP+ NV+GTKWIF+NK++E G +TRNK+R
Sbjct: 1046 KEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKAR 1105
Query: 770 LVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVY 829
LVAQGY+QIEG+DF ETFAP ARLESIRLLLGVAC+LKF+LYQMDVKSAFLNGYLNEE Y
Sbjct: 1106 LVAQGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAY 1165
Query: 830 VEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKN 889
VEQPKGFVDP+ PDHVYRLKKALYGLKQAPRAWYERLTEFL GY KGGIDKTLFVK++
Sbjct: 1166 VEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQD 1225
Query: 890 GGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFI 949
LM+AQIYVDDIVFGGMSN+M+ FV+QM+SEFEMSLVGELTYFLGLQVKQMED++F+
Sbjct: 1226 AENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFL 1285
Query: 950 TQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASRP 1009
+QSKYAK IVKKFG+ENA HKRTPA TH+KL+KDE GT VD SLYRSMIGSLLYLTASRP
Sbjct: 1286 SQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRP 1345
Query: 1010 DITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGS 1069
DIT+AVG CARYQA PK SHL QVKRI+KY++GTSDYGI+Y H ++S L GYCDADWAGS
Sbjct: 1346 DITYAVGGCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGS 1405
Query: 1070 ADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNV 1129
DDRKST GGCF+L N ISWFSKKQNCVSLSTAEAEYIAAGSSC+QL+WMKQMLKEYNV
Sbjct: 1406 VDDRKSTFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNV 1465
Query: 1130 QQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADI 1189
+QDVMTL+CDNLSAINISKNP+QHSRTKHIDIRHH+IR+LV+D +TLEHV TE+Q+ADI
Sbjct: 1466 EQDVMTLYCDNLSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADI 1525
Query: 1190 FTKALDATQFEKLRQLLGICLFEE 1213
FTKALDA QFEKLR LGICL E+
Sbjct: 1526 FTKALDANQFEKLRGKLGICLLED 1549
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1690 bits (4376), Expect = 0.0
Identities = 830/1224 (67%), Positives = 993/1224 (80%), Gaps = 24/1224 (1%)
Query: 1 ISDEELAEAYKLLYTKWKEACIYGQQQKKQVVELQAEKK-------KLTEEVALLNSKME 53
I+ +ELA +Y+ L K ++ Q KK + L+AEK+ +L EV LNSK+E
Sbjct: 365 ITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLNSKLE 424
Query: 54 GMTKSIRMMSKSTDILDEILDVGKSAGDKTGIGFDYRAVNKASQNMTKEHVQIGRQSNVK 113
MTKSI+M++K +D+LDE+L +GK+ G++ G+GF++++ + + E V +
Sbjct: 425 NMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSACRITMT---EFVPAKNSTGAT 481
Query: 114 MWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKS 173
M R + H Q + + WRCHYCG++GHI+P+C+ L+G+P S S
Sbjct: 482 MSQHRSR----HHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQS----SSS 533
Query: 174 PGKSRWKPKVNATALIAHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFG 233
K W PK +L+ HTSLRAS+KEDWY DSGCSRHMTGVK +L ++P + S+VTFG
Sbjct: 534 GRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFG 593
Query: 234 DGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKN 293
DG+KGKI G+GKL G P+L+ VLLV+GLTANLISISQLCD+G V F +S C+V N+
Sbjct: 594 DGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEK 653
Query: 294 KDVLMRGARSKDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAV 353
+VLM+G+RSKDNCY+WT + T S+ CL SKEDEV+IWHQ+ GHL+L+ MK+I+ + AV
Sbjct: 654 SEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAV 713
Query: 354 RGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRY 413
RGIP LKI+EG++CGECQIGKQVKMSHQKLQH TTS VLELLHMDLMGPMQVESLGGKRY
Sbjct: 714 RGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRY 773
Query: 414 VFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSE 473
+V VDDFSRFTWV F++EKSDTFEVFKEL L++QREK I +IRSDHG+EFEN +F+E
Sbjct: 774 AYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTE 833
Query: 474 FCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHN 533
FC+SEGI HEFSA ITPQQNG+VERKNRTLQE+ R MLHAK LPY+ WAEA+NTACYIHN
Sbjct: 834 FCTSEGITHEFSAAITPQQNGIVERKNRTLQEATRVMLHAKELPYNLWAEAMNTACYIHN 893
Query: 534 RVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGN 593
RVT+R+G T YE+WKG+KPTVK+FH+FGS CYIL+DRE RRK+DPKS+ GIFLGYS N
Sbjct: 894 RVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTN 953
Query: 594 SRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHDEDDLPYECTNVEPDEPAIQFPNEQE 653
SRAYRV+N RT+ +MESINVVVDD + R E+D+ NV + + + +
Sbjct: 954 SRAYRVFNSRTRTVMESINVVVDDLTPARKKDV--EEDVRTSEDNVADTAKSAENAEKSD 1011
Query: 654 NTVSQPPL--ATKEPSIRVQKIHPKENIIGDLNDGVITRSRDL--VSNACFISKVEPKNV 709
+T +P + K P IR+QK+ PKE IIGD N GV TRSR++ VSN+CF+SK+EPKNV
Sbjct: 1012 STTDEPNINQPDKSPFIRIQKMQPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNV 1071
Query: 710 KEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSR 769
KEALTDEFWI +MQEEL QFKRNEVWELVPRP+ NV+GTKWIF+NK++E G +TRNK+R
Sbjct: 1072 KEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKAR 1131
Query: 770 LVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVY 829
LVAQGY+QIEG+DF ETFAPVARLESIRLLLGVAC+LKF+LYQMDVKSAFLNGYLNEE Y
Sbjct: 1132 LVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAY 1191
Query: 830 VEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKN 889
VEQPKGFVDP+ DHVYRLKKALYGLKQAPRAWYERLTEFL GY KGGIDKTLFVK++
Sbjct: 1192 VEQPKGFVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQD 1251
Query: 890 GGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFI 949
LM+AQIYVDDIVFGGMSN+M+ FV QM+SEFEMSLVGEL YFLGLQVKQMED++F+
Sbjct: 1252 AENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHYFLGLQVKQMEDSIFL 1311
Query: 950 TQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASRP 1009
+QSKYAK IVKKFG+ENA HKRTPA TH+KL+KDE GT VD +LYRSMIGSLLYLTASRP
Sbjct: 1312 SQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLYRSMIGSLLYLTASRP 1371
Query: 1010 DITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGS 1069
DITFAVGVCARYQA PK SHL QVKRI+KY++GTSDYGI+Y H ++S L GYCDADWAGS
Sbjct: 1372 DITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGS 1431
Query: 1070 ADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNV 1129
ADDRK TSGGCF+L NLISWFSKKQNCVSLSTAEAEYIAAGSSC+QL+WMKQMLKEYNV
Sbjct: 1432 ADDRKCTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNV 1491
Query: 1130 QQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADI 1189
+QDVMTL+CDN+SAINISKNP+QH+RTKHIDIRHH+IR+LV+D +TLEHV TE+Q+ADI
Sbjct: 1492 EQDVMTLYCDNMSAINISKNPVQHNRTKHIDIRHHYIRDLVDDKIITLEHVDTEEQVADI 1551
Query: 1190 FTKALDATQFEKLRQLLGICLFEE 1213
FTKALDA QFEKLR LG CL E+
Sbjct: 1552 FTKALDANQFEKLRGKLGTCLLED 1575
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 1184 bits (3062), Expect = 0.0
Identities = 617/1225 (50%), Positives = 820/1225 (66%), Gaps = 50/1225 (4%)
Query: 19 EACIYGQQQKKQVVELQAEKKKLTEEVALLNSKMEGMTKSIRMMSKSTDILDEILDVGKS 78
E + Q + + +++ A+++K E L+ + K I M++K T LD IL G+
Sbjct: 431 ELAVANQIKSEMILKYSAKEEKNRE----LSQDLSDTRKKIHMLNKGTKDLDSILAAGRV 486
Query: 79 AGDKTGIGFDYRAVN--------KASQNMTKEHVQIGRQSNVKMWNRRPQQSVTHSYAQV 130
G+G+ + KA+ + V + ++V + Q+ HS V
Sbjct: 487 GKSNFGLGYHGGGSSTKTNFVRSKAAAPTQSQSVFRSKSNSVPARRKYQNQNHYHSQRTV 546
Query: 131 RNYQNSTWRCHYCGRFGHIRPYCFKLYG-YPILQDVSREYEKKSPGKSRWKPKVNATALI 189
Y+ C+YCGR GHI+ YC++ L+ + Y + + + + +
Sbjct: 547 TGYE-----CYYCGRHGHIQRYCYRYAARLSKLKRQGKLYPHQGRNSKMYVRREDLYCHV 601
Query: 190 AHTSLRASSKEDWYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDT 249
A+TS+ K+ WYFDSG SRHMTG ++ L +S V FG GAKG+I+G G L++T
Sbjct: 602 AYTSIAEGVKKPWYFDSGASRHMTGSQANLNNYSSVKESNVMFGGGAKGRIKGKGDLTET 661
Query: 250 GSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYM 309
P+L +V VEGLTANLIS+SQLCD+GL V F + C N+ + G R+ +NCYM
Sbjct: 662 EKPHLTNVYFVEGLTANLISVSQLCDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCYM 721
Query: 310 WTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGE 369
W CL +++++ +WHQ+LGH+N +SM ++V +E VRG+P+LK E VCG
Sbjct: 722 WEEPKI-----CLRAEKEDPVLWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGA 776
Query: 370 CQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEF 429
C GKQ+++ H++++ + T++VL+L+HMDLMGPMQ ES+ GKRYVFV VDDFSR+ WV F
Sbjct: 777 CNQGKQIRVQHKRVEGIQTTQVLDLIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRF 836
Query: 430 LKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPIT 489
++EKS+T FK L LQ++ EK GI +IRSD G EF N F+ FC S+GI H++SAP T
Sbjct: 837 IREKSETANSFKILALQLKNEKKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRT 896
Query: 490 PQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELW 549
PQ NGVVERKNRTLQE ARAM+H +P FWAEAI+TACY+ NRV +R G T YE+W
Sbjct: 897 PQSNGVVERKNRTLQEMARAMIHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIW 956
Query: 550 KGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMME 609
KGKKP + YF VFG CYI++D++ K D +SE G FLGY+ NS AYRV+N + + E
Sbjct: 957 KGKKPNLSYFRVFGCVCYIMNDKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEE 1016
Query: 610 SINVVVDDTSN-ERTGQAHDEDDLPYECTNVEPDEPAI-QFPNEQENTVSQPPLATKEPS 667
S+NVV DD S E + ++ +N +E QF N N + + P
Sbjct: 1017 SMNVVFDDGSMPELQIIVRNRNEPQTSISNNHGEERNDNQFDNGDINKSGEES-DEEVPP 1075
Query: 668 IRVQKIHPKENIIGDLNDGVITRS---------------RDLVSNACF--------ISKV 704
+V + H ++IIGD + +TR R + S ACF +S V
Sbjct: 1076 AQVHRDHASKDIIGDPSGERVTRGVKQDYRQLAGIKQKHRVMASFACFEEIMFSCFVSIV 1135
Query: 705 EPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVT 764
EPKNVKEAL D FWI +M+EEL +F R++VW+LVPRP NV+GTKWIF+NK DE GN+T
Sbjct: 1136 EPKNVKEALEDHFWILAMEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNIT 1195
Query: 765 RNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYL 824
RNK+RLVAQGY+Q+EG+DF ETFAPVARLE IR LLG AC + F+L+QMDVK AFLNG +
Sbjct: 1196 RNKARLVAQGYTQVEGLDFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGII 1255
Query: 825 NEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTL 884
EEVYVEQPKGF + FP++VY+LKKALYGLKQAPRAWYERLT FLI GY +G +DKTL
Sbjct: 1256 EEEVYVEQPKGFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTL 1315
Query: 885 FVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQME 944
FVK + +++ QIYVDDIVFGG S+++V+ FV+ M +EF MS+VGEL YFLGLQ+ Q +
Sbjct: 1316 FVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTD 1375
Query: 945 DTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYL 1004
+ + I+QS YA+ +VK+FG+ ++ TP +T KL KDEKG VD LYR MIGSLLYL
Sbjct: 1376 EGITISQSTYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYL 1435
Query: 1005 TASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDA 1064
TA+RPD+ +VG+CARYQ+ PK SHL+ VKRIIKY+SGT +YG+ Y+ +T+ L GYCDA
Sbjct: 1436 TATRPDLCLSVGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVGYCDA 1495
Query: 1065 DWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQML 1124
DW G+ DDR+ST+GG FFL +NLISW SKKQNCVSLS+ ++EYIA GS CTQL+WM+QM
Sbjct: 1496 DWGGNLDDRRSTTGGVFFLGSNLISWHSKKQNCVSLSSTQSEYIALGSCCTQLLWMRQMG 1555
Query: 1125 KEYNVQ-QDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTE 1183
+Y + D + + CDN SAI ISKNP+QHS TKHI IRHHF+RELVE+ +T+EHV TE
Sbjct: 1556 LDYGMTFPDPLLVKCDNESAIAISKNPVQHSVTKHIAIRHHFVRELVEEKQITVEHVPTE 1615
Query: 1184 KQLADIFTKALDATQFEKLRQLLGI 1208
QL DIFTK LD F L++ LGI
Sbjct: 1616 IQLVDIFTKPLDLNTFVNLQKSLGI 1640
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 952 bits (2462), Expect = 0.0
Identities = 519/1174 (44%), Positives = 721/1174 (61%), Gaps = 77/1174 (6%)
Query: 104 VQIGRQSNVKMWNRRPQQSVTHSYAQVRNYQNSTWRCHYCGRFGHIRPYCFKLY------ 157
V++ R N K + Q Q + + + + C YCG+ GH+ +CF+
Sbjct: 705 VELPRPKNPKQVEHKQNQR------QTKPVEKTKYECTYCGKAGHLVGFCFRKARKERQE 758
Query: 158 ------GYPILQDVSREYEKKSPGKSRWK-----PKVNATAL-----------IAHTSLR 195
+ + Y +S G SR+ P+ + L AH +
Sbjct: 759 RLRTRRATRVPERFECAYHCRSSGVSRFPRRDVHPRRDLAGLGQNRHGHLAYNSAHNTKD 818
Query: 196 A-SSKED----------WYFDSGCSRHMTG-VKSYLEKMKPHAKSFVTFGDGAKGKIRGI 243
A +S+ D W DSGCSRHMTG K + + + +TFGD + G++
Sbjct: 819 ACTSRTDSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAK 878
Query: 244 GKLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARS 303
G + L DV LV L NL+S+SQLCD+ L+V FK+ V + ++ + +R
Sbjct: 879 GTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRV 938
Query: 304 KDNCYMWTSETTFLSARCLMSKED-EVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQ 362
+ + +RCL++ E+ ++ WH++LGH+ + RI + +RG+PKLK+
Sbjct: 939 GRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVP 998
Query: 363 EGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFS 422
+ VC C+ GK SH+ + + T +LLHMD +GP +V+S+GGK YV V VDDFS
Sbjct: 999 KDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFS 1058
Query: 423 RFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKH 482
R++WV FL+ K +TF F+ L + E + IRSD+G EF+N F FC S G++H
Sbjct: 1059 RYSWVYFLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEH 1118
Query: 483 EFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDT 542
+FS+P PQQNGVVERKNRTL E AR ML P FW EAI+ AC+I NRV +R
Sbjct: 1119 QFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILH 1178
Query: 543 VTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNI 602
T YEL G++P V + VFG KC++L + K + +S GIFLGY+ +SRAYRVY +
Sbjct: 1179 KTPYELRFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESRSLDGIFLGYATHSRAYRVYVL 1237
Query: 603 RTKVMMESINVVVDDTSN----------------ERTGQAHDEDDLPYECTNVEPDE--- 643
T ++E+ V D+ S + D+D +P + P +
Sbjct: 1238 STNKIVETCEVTFDEASPGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETG 1297
Query: 644 ------PAIQFPNEQENTVSQPPLATKEPSI--RVQKIHPKENIIGDLNDGVI-TRSRDL 694
P+ P + + T P+ +Q HP +++IG L + V RS +L
Sbjct: 1298 SPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYEL 1357
Query: 695 VSNACFISKVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFR 754
V N+ F++ EPKNV AL+DE W+ +M EEL F+RN+VW LV P NV+GTKW+F+
Sbjct: 1358 V-NSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFK 1416
Query: 755 NKSDESGNVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMD 814
NK E G++ RNK+RLVAQG++Q+EG+DF ETFAPVARLE+IR+LL A F+L+QMD
Sbjct: 1417 NKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMD 1476
Query: 815 VKSAFLNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNG 874
VKSAFLNG + EEVYV+QP GF +P FP+HV++L+KALYGLKQAPRAWYERL FL+ NG
Sbjct: 1477 VKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNG 1536
Query: 875 YDKGGIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTY 934
++ G +DKTLF +G + ++ QIYVDDI+FGG S+ +V QF + M EFEMS++GELT+
Sbjct: 1537 FEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTF 1596
Query: 935 FLGLQVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLY 994
FLGLQ+KQ ++ +F+ Q+KY+K ++KKF + + TP AT L DE G +VD Y
Sbjct: 1597 FLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREY 1656
Query: 995 RSMIGSLLYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNT 1054
RSMIGSLLYLTASRPDI F+V +CAR+QA P+TSH VKR+ +YI T +YGI YS ++
Sbjct: 1657 RSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSS 1716
Query: 1055 NSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSC 1114
+ + DAD+AG DRKSTSG C FL +L+SW S+KQ+ V+ STAEAEY+AA S+C
Sbjct: 1717 ALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASAC 1776
Query: 1115 TQLMWMKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGT 1174
+Q++WM LK+Y + + L CDN SAINI+KNP+QHSRTKHI+IR+HF+R+ VE GT
Sbjct: 1777 SQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGT 1836
Query: 1175 VTLEHVSTEKQLADIFTKALDATQFEKLRQLLGI 1208
+ LE V +EKQLADIFTK LD ++FE LR LG+
Sbjct: 1837 IVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1870
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 949 bits (2454), Expect = 0.0
Identities = 496/1048 (47%), Positives = 676/1048 (64%), Gaps = 32/1048 (3%)
Query: 191 HTSLRASSKEDWYFDSGCSRHMTG-VKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDT 249
H W DSGCSRHMTG K + + +TFGD + G++ G +
Sbjct: 743 HLDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVN 802
Query: 250 GSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYM 309
L DV LV L NL+S+SQLCD+ L+V FK+ V + ++ + +R +
Sbjct: 803 DKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFA 862
Query: 310 WTSETTFLSARCLMSKED-EVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCG 368
+ +RCL++ E+ ++ WH++LGH+ + RI + +RG+PKLK+Q+ VC
Sbjct: 863 NFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCA 922
Query: 369 ECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVE 428
C+ GK SH+ + + T +LLHMD +GP +V+S+GGK YV V VDDFSR++WV
Sbjct: 923 PCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVY 982
Query: 429 FLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPI 488
FL+ K +TF F+ L + E + IRSD+G EF+N F FC S G++H+FS+P
Sbjct: 983 FLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPY 1042
Query: 489 TPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYEL 548
PQQNGVVERKNRTL E AR ML P FW EAI+ AC+I NRV +R T YEL
Sbjct: 1043 VPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYEL 1102
Query: 549 WKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMM 608
G++P V + VFG KC++L + K + +S GIFLGY+ +SRAYRVY + T ++
Sbjct: 1103 RFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIV 1161
Query: 609 ESINVVVDDTSN----------------ERTGQAHDEDDLPYECTNVEPDE--------- 643
E+ V D+ S + D+D +P + P +
Sbjct: 1162 ETCEVTFDEASPGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTS 1221
Query: 644 PAIQFPNEQENTVSQPPLATKEPSI--RVQKIHPKENIIGDLNDGVI-TRSRDLVSNACF 700
P+ P + + T P+ +Q HP +++IG L + V RS +LV N+ F
Sbjct: 1222 PSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELV-NSAF 1280
Query: 701 ISKVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDES 760
++ EPKNV AL+DE W+ +M EEL F+RN+VW LV P NV+GTKW+F+NK E
Sbjct: 1281 VASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGED 1340
Query: 761 GNVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFL 820
G++ RNK+RLVAQG++Q+EG+DF ETFAPVARLE+IR+LL A F+L+QMDVKSAFL
Sbjct: 1341 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1400
Query: 821 NGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGI 880
NG + EEVYV+QP GF +P FP+HV++L+KALYGLKQAPRAWYERL FL+ NG++ G +
Sbjct: 1401 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1460
Query: 881 DKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQV 940
DKTLF +G + ++ QIYVDDI+FGG S+ +V QF + M EFEMS++GELT+FLGLQ+
Sbjct: 1461 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQI 1520
Query: 941 KQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGS 1000
KQ ++ +F+ Q+KY+K ++KKF + + TP AT L DE G +VD YRSMIGS
Sbjct: 1521 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1580
Query: 1001 LLYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTG 1060
LLYLTASRPDI F+V +CAR+QA P+TSH VKRI +YI T +YGI YS ++ +
Sbjct: 1581 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRA 1640
Query: 1061 YCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWM 1120
+ DAD+AG DRKSTSG C FL +L+SW S+KQ+ V+ STAEAEY+AA S+C+Q++WM
Sbjct: 1641 FSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWM 1700
Query: 1121 KQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHV 1180
LK+Y + + L CDN SAINI+KNP+QHSRTKHI+IR+HF+R+ VE GT+ LE V
Sbjct: 1701 ISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFV 1760
Query: 1181 STEKQLADIFTKALDATQFEKLRQLLGI 1208
+EKQLADIFTK LD ++FE LR LG+
Sbjct: 1761 ESEKQLADIFTKPLDRSRFEFLRSELGV 1788
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 948 bits (2450), Expect = 0.0
Identities = 508/1061 (47%), Positives = 666/1061 (61%), Gaps = 52/1061 (4%)
Query: 196 ASSKEDWYFDSGCSRHMTGVK----SYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGS 251
AS W DSGC+ HMTG K SY++ ++ + FGDG +GK++G+GK++ +
Sbjct: 5 ASGGSSWIIDSGCTNHMTGEKKMFTSYVKNKD--SQDSIIFGDGNQGKVKGLGKIAISNE 62
Query: 252 PNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYM-- 309
++ +V LVE L NL+S+SQLC+ G +F V + L Y+
Sbjct: 63 HSISNVFLVESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVD 122
Query: 310 WTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGE 369
+ E L A CL++K +WH++L H+ +K++ +++ E V G+ ++ ++ + C
Sbjct: 123 FAKEEAGLDA-CLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAA 181
Query: 370 CQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEF 429
CQ GKQV SH +TTS+ LE+LHMDL GP+ S+GG +Y V VDDFSRFTWV F
Sbjct: 182 CQAGKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFF 241
Query: 430 LKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPIT 489
L+EKS+T K + Q E + KIRSD+G EF+N Q EF EGIKHEFSAP T
Sbjct: 242 LQEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYT 301
Query: 490 PQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELW 549
PQQNGVVERKNRTL + AR ML P FW EA+NTAC+ NRV + + T YEL
Sbjct: 302 PQQNGVVERKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYELL 361
Query: 550 KGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMME 609
G KP V YF VFGSKCYIL + K PK+ G LGY N++AYRV+N + ++
Sbjct: 362 TGNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEV 421
Query: 610 SINVVVDDTSNERTGQAHDEDDL-------------------PYECTNVEPDEPA--IQF 648
S +VV D+T+ Q D DD+ P E E P+ +
Sbjct: 422 SGDVVFDETNGSPREQVVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVHP 481
Query: 649 PNEQENTVSQP-------------------PLATKEPSIRVQKIHPKENIIGDLNDGVIT 689
P + + V Q P + +Q+ HP + I+GD++ GV T
Sbjct: 482 PTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTT 541
Query: 690 RSR--DLVSNACFISKVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVV 747
RSR + + F+S +EP V+EAL D W+ +MQEEL FKRNEVW LVPRP NVV
Sbjct: 542 RSRLVNFCEHNSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVV 600
Query: 748 GTKWIFRNKSDESGNVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLK 807
GTKW+FRNK DE G VTRNK+RLVA+GY+Q+ G+DF ETFAPVARLESIR+LL A
Sbjct: 601 GTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHS 660
Query: 808 FRLYQMDVKSAFLNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLT 867
FRLYQMDVKSAFLNG + EEVYVEQP GF D +PDHV +L KALYGLKQAPRAWYE L
Sbjct: 661 FRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLR 720
Query: 868 EFLINNGYDKGGIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMS 927
+FLI N + G D TLF K G+L V QIYVDDI+FG + + E+F M +FEMS
Sbjct: 721 DFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMS 780
Query: 928 LVGELTYFLGLQVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGT 987
++GEL YFLG QVKQ++D FI+Q+KY + ++K+FG+++A +TP T ++ G
Sbjct: 781 MMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGK 840
Query: 988 DVDPSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYG 1047
VD YRSMIGSLLYL ASRPDI +V +CAR+Q++PK HL+ VKRI++Y+ T +G
Sbjct: 841 SVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFG 900
Query: 1048 ILYSHNTNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEY 1107
+ Y + L GY D+D+AG DRKSTSG C FL +L+SW SKKQ V+LSTAEAEY
Sbjct: 901 LWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEY 960
Query: 1108 IAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIR 1167
+AAG C QL+WM+Q L+++ + L CDN SAI +++NP++HSRTKHIDIRHHF+R
Sbjct: 961 VAAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLR 1020
Query: 1168 ELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKLRQLLGI 1208
+ + G + + HVSTE QLADIFTK LD F +LR L +
Sbjct: 1021 DHQQKGDIEVFHVSTENQLADIFTKPLDEKTFCRLRSELNV 1061
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 946 bits (2446), Expect = 0.0
Identities = 494/1048 (47%), Positives = 676/1048 (64%), Gaps = 32/1048 (3%)
Query: 191 HTSLRASSKEDWYFDSGCSRHMTG-VKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDT 249
H W DSGCSRHMTG K + + + +TFGD + G++ G +
Sbjct: 743 HLDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVN 802
Query: 250 GSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYM 309
L DV LV L NL+S+SQLCD+ L+V FK+ V + ++ + +R +
Sbjct: 803 DKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFA 862
Query: 310 WTSETTFLSARCLMSKED-EVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCG 368
+ +RCL++ E+ ++ WH++LGH+ + RI + +RG+PKLK+ + VC
Sbjct: 863 NFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCA 922
Query: 369 ECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVE 428
C+ GK SH+ + + T +LLHMD +GP +V+S+GGK YV V VDDFSR++WV
Sbjct: 923 PCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVY 982
Query: 429 FLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPI 488
FL+ K +TF F+ L + E + IRSD+G EF+N F FC S G++H+FS+P
Sbjct: 983 FLESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPY 1042
Query: 489 TPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYEL 548
PQQNGVVERKNRTL E AR ML P FW EAI+ AC+I NRV +R T YEL
Sbjct: 1043 VPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYEL 1102
Query: 549 WKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMM 608
G++P V + VFG KC++L + K + +S GIFLGY+ +SRAYRVY + T ++
Sbjct: 1103 RFGRRPKVSHLRVFGCKCFVLKSG-NLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIV 1161
Query: 609 ESINVVVDDTSN----------------ERTGQAHDEDDLPYECTNVEPDE--------- 643
E+ V D+ S + D+D +P + P +
Sbjct: 1162 ETCEVTFDEASPGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTS 1221
Query: 644 PAIQFPNEQENTVSQPPLATKEPSI--RVQKIHPKENIIGDLNDGVI-TRSRDLVSNACF 700
P+ P + + T P+ +Q HP +++IG L + V RS +LV N+ F
Sbjct: 1222 PSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELV-NSAF 1280
Query: 701 ISKVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDES 760
++ EPKNV AL+DE W+ +M EEL F+RN+VW LV P NV+GTKW+F+NK E
Sbjct: 1281 VASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGED 1340
Query: 761 GNVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFL 820
G++ RNK+RLVAQG++Q+EG+DF ETFAPVARLE+IR+LL A F+L+QMDVKSAFL
Sbjct: 1341 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1400
Query: 821 NGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGI 880
NG + EEVYV+QP GF +P FP+HV++L+KALYGLKQAPRAWYERL FL+ NG++ G +
Sbjct: 1401 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1460
Query: 881 DKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQV 940
DKTLF +G + ++ QIYVDDI+FGG S+ +V QF + M EFEMS++GELT+FLGLQ+
Sbjct: 1461 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQI 1520
Query: 941 KQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGS 1000
KQ ++ +F+ Q+KY+K ++KKF + + TP AT L DE G +VD YRSMIGS
Sbjct: 1521 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1580
Query: 1001 LLYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTG 1060
LLYLTASRPDI F+V +CAR+QA P+TSH VKR+ +YI T +YGI YS ++ +
Sbjct: 1581 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRA 1640
Query: 1061 YCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWM 1120
+ DAD+AG DRKSTSG C FL +L+SW S+KQ+ V+ STAEAEY+AA S+C+Q++WM
Sbjct: 1641 FSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWM 1700
Query: 1121 KQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHV 1180
LK+Y + + L CDN SAINI+KNP+QHSRTKHI+IR+HF+R+ VE GT+ LE V
Sbjct: 1701 ISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFV 1760
Query: 1181 STEKQLADIFTKALDATQFEKLRQLLGI 1208
+EKQLADIFTK LD ++FE LR LG+
Sbjct: 1761 ESEKQLADIFTKPLDRSRFEFLRSELGV 1788
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 943 bits (2437), Expect = 0.0
Identities = 494/1037 (47%), Positives = 672/1037 (64%), Gaps = 32/1037 (3%)
Query: 202 WYFDSGCSRHMTG-VKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDDVLLV 260
W DSGCSRHMTG K + + +TFGD + G++ G + L DV LV
Sbjct: 369 WLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALV 428
Query: 261 EGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYMWTSETTFLSAR 320
L NL+S+SQLCD+ L+V FK+ V + ++ + +R + + +R
Sbjct: 429 SKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSR 488
Query: 321 CLMSKED-EVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGECQIGKQVKMS 379
CL++ E+ ++ WH++LGH+ + RI + +RG+PKLK + VC C+ GK S
Sbjct: 489 CLVASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGKMTSSS 548
Query: 380 HQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTFEV 439
H+ + + T +LLHM+ +GP +V+S+GGK YV V VDDFSR++WV FL+ K +TF
Sbjct: 549 HKPVTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGF 608
Query: 440 FKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERK 499
F+ L + E + IRSD+G EF+N F FC S G++H+FS+P PQQNGVVERK
Sbjct: 609 FQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 668
Query: 500 NRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVKYF 559
NRTL E AR ML P FW EAI+ AC+I NRV +R T YEL G++P V +
Sbjct: 669 NRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHL 728
Query: 560 HVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVVDDTS 619
VFG KC++L + K + +S GIFLGY+ +SRAYRVY + T ++E+ V D+ S
Sbjct: 729 RVFGCKCFVLKSG-NLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEAS 787
Query: 620 N----------------ERTGQAHDEDDLPYECTNVEPDE---------PAIQFPNEQEN 654
+ D+D +P + P + P+ P +
Sbjct: 788 PGARPEISGVLDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSS 847
Query: 655 TVSQPPLATKEPSI--RVQKIHPKENIIGDLNDGVI-TRSRDLVSNACFISKVEPKNVKE 711
+ T P+ +Q HP +++IG L + V RS DLV N+ F++ EPKNV
Sbjct: 848 AAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYDLV-NSAFVASFEPKNVCH 906
Query: 712 ALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSRLV 771
AL+DE W+ +M EEL F+RN+VW LV P NV+GTKW+F+NK E G++ RNK+RLV
Sbjct: 907 ALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLV 966
Query: 772 AQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYVE 831
AQG++Q+EG+DF ETFAPVARLE+IR+LL A F+L+QMDVKSAFLNG + EEVYV+
Sbjct: 967 AQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVK 1026
Query: 832 QPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKNGG 891
QP GF +P FP+HV++L KALYGLKQAPRAWYERL FL+ NG++ G +DKTLF +G
Sbjct: 1027 QPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGI 1086
Query: 892 ELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFITQ 951
+ ++ QIYVDDI+FGG S+ +V QF + M EFEMS++GELT+FLGLQ+KQ ++ +F+ Q
Sbjct: 1087 DFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQ 1146
Query: 952 SKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASRPDI 1011
+KY+K ++KKF + + TP AT L DE G +VD YRSMIGSLLYLTASRPDI
Sbjct: 1147 TKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDI 1206
Query: 1012 TFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGSAD 1071
F+V +CAR+QA P+TSH VKRI +YI T +YGI YS ++ + + DAD+AG
Sbjct: 1207 HFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKI 1266
Query: 1072 DRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQ 1131
DRKSTSG C FL +L+SW S+KQ+ V+ STAEAEY+AA S+C+Q++WM LK+Y +
Sbjct: 1267 DRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSF 1326
Query: 1132 DVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFT 1191
+ L CDN SAINI+KNP+QHSRTKHI+IR+HF+R+ VE GT+ LE V +EKQLADIFT
Sbjct: 1327 SGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFT 1386
Query: 1192 KALDATQFEKLRQLLGI 1208
K LD ++FE LR LG+
Sbjct: 1387 KPLDRSRFEFLRSELGV 1403
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 911 bits (2355), Expect = 0.0
Identities = 496/1048 (47%), Positives = 652/1048 (61%), Gaps = 58/1048 (5%)
Query: 212 MTGVK----SYLEKMKPHAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDDVLLVEGLTANL 267
MTG K SY++ ++ + FGDG +GK++G+GK++ + ++ +V LVE L N
Sbjct: 1 MTGEKKMFTSYVKNKD--SQDSIIFGDGNQGKVKGLGKIAISSEHSISNVFLVESLGYNF 58
Query: 268 ISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKDNCYM--WTSETTFLSARCLMSK 325
+S+SQLC+ G +F V ++ L Y+ + E L A CL++K
Sbjct: 59 LSVSQLCNMGYNCLFTNVDVSVFRRSDGSLAFKGVLDGKLYLVDFAKEEAGLDA-CLIAK 117
Query: 326 EDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGECQIGKQVKMSHQKLQH 385
+WH++L H+ +K++ +++ E V G+ ++ ++ + C CQ GKQV+ SH
Sbjct: 118 TSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFKKDRPCVACQAGKQVRGSHHTKNV 177
Query: 386 LTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTFEVFKELCL 445
+TTS+ LE+LHMDL GP+ S+GG +Y V VDDFSRFTWV FL++KS+T K
Sbjct: 178 MTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRYLR 237
Query: 446 QVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVERKNRTLQE 505
+ Q E + KIRSD+G EF+N Q EF EGIKHEFSAP TPQQNGVVERKNRTL +
Sbjct: 238 RAQNEFELKVKKIRSDNGSEFKNLQVEEFLVEEGIKHEFSAPYTPQQNGVVERKNRTLMD 297
Query: 506 SARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVKYFHVFGSK 565
AR ML P FW+EA+NTAC+ NRV + + T YEL G KP V YF VFGSK
Sbjct: 298 MARTMLGEFKTPERFWSEAVNTACHSINRVYLHRLLKNTSYELLTGNKPNVSYFRVFGSK 357
Query: 566 CYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVVDDTSNE---- 621
CYIL + K PK+ G LGY N++AYRV+N + ++ S +VV D+T+
Sbjct: 358 CYILVKKGRTSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSLREQ 417
Query: 622 -----------------RT-------GQAHDEDDLPYECTNVEP----DEPAIQFPN--- 650
RT Q H E D P T V P DE A Q
Sbjct: 418 VVNLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSTTMVHPPTQDDEQAPQVGAHDQ 477
Query: 651 --------EQENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSR--DLVSNACF 700
E+E PP + +Q+ HP I+GD++ GV TRSR + + F
Sbjct: 478 GGAQDVQVEEEEAPQAPPTQVRAT---IQRNHPVNQILGDISKGVTTRSRLVNFCEHYSF 534
Query: 701 ISKVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDES 760
+S +EP V+E L D W+ +MQEEL FKRNEVW LVPRP NVVGTKW+FRNK DE
Sbjct: 535 VSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEH 593
Query: 761 GNVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFL 820
G VTRNK+RLVA+GY+Q+ G+DF ETFAPVARL+SIR+ L A FRLYQMDVKSAFL
Sbjct: 594 GVVTRNKARLVAKGYAQVAGLDFEETFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSAFL 653
Query: 821 NGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGI 880
NG + EEVYVEQP GF D FPDHV +L KALYGLKQAPRAWYE L +FLI N + G
Sbjct: 654 NGPIKEEVYVEQPPGFEDERFPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKA 713
Query: 881 DKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQV 940
D TLF K G+L V QIYVDDI+FG + E+F M +FEMS++GEL+YFLG QV
Sbjct: 714 DPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQV 773
Query: 941 KQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGS 1000
+Q++D FI+Q+KY + ++K+FG+++A +TP T ++ G VD YRS IGS
Sbjct: 774 RQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGS 833
Query: 1001 LLYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTG 1060
LLYL ASRPDI +V +CAR+Q++P+ HL+ VKRI++Y+ T +GI Y + L G
Sbjct: 834 LLYLCASRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIG 893
Query: 1061 YCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWM 1120
Y D+D+A DRKSTS C FL +L+SW SKKQ V+LSTAEAEY+A G C QL+WM
Sbjct: 894 YSDSDYARCKVDRKSTSRMCQFLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWM 953
Query: 1121 KQMLKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHV 1180
+Q L+++ + L CDN SAI I++NP++HSRTKHIDIRHHF+R+ + G + + HV
Sbjct: 954 RQTLRDFGYNLSEVPLLCDNESAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGVIEVFHV 1013
Query: 1181 STEKQLADIFTKALDATQFEKLRQLLGI 1208
S+E LADIFTK LD F KL L +
Sbjct: 1014 SSENHLADIFTKPLDEQTFCKLHSELNV 1041
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 901 bits (2329), Expect = 0.0
Identities = 480/1047 (45%), Positives = 654/1047 (61%), Gaps = 59/1047 (5%)
Query: 202 WYFDSGCSRHMTGVKSYLEKMKP--HAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDDVLL 259
W DSGC++HMTG ++ + + + VTFGD +KGK+ G+GK++ + ++D+V L
Sbjct: 558 WVLDSGCTQHMTGDRAMFTTFEVGGNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 617
Query: 260 VEGLTANLISISQLCDQGLKVVFKQSGCVVKNK-NKDVLMRGARSKDNCYMWTSETTFLS 318
V+ L NL+S++Q+CD L F +V + +K + +G R N Y+ ++ +
Sbjct: 618 VKSLNFNLLSVAQICDLVLSCAFFPQEVIVSSLLDKSCVFKGFRY-GNLYLGDFNSSEAN 676
Query: 319 AR-CLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGECQIGKQVK 377
+ CL++K +WH++L H+ + + ++ + V G+ +K ++ K+C CQ GKQV
Sbjct: 677 LKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVA 736
Query: 378 MSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTF 437
SH ++TS+ LELLHM+ GP +S+GG + V VDD+SR+TW+ FL +KS
Sbjct: 737 CSHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNSHCLVIVDDYSRYTWMFFLHDKSIVA 796
Query: 438 EVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVE 497
E+FK+ + Q E +VKIRSD+G +F+N ++C GIKHE SA +PQQNGVVE
Sbjct: 797 ELFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIEDYCDDLGIKHELSATYSPQQNGVVE 856
Query: 498 RKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVK 557
KNRTL E AR ML + FWAEAINTAC+ NR+ + + T YEL G+KP V
Sbjct: 857 MKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPNVA 916
Query: 558 YFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVVDD 617
YF VFG KCYI K + + + G LGY+ NS+AYRVYN ++ E+ +V D+
Sbjct: 917 YFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDE 976
Query: 618 TSNERTGQAHDED------------------------DLPYECTNVEPDEPA------IQ 647
T+ + G + +D D P T EP A ++
Sbjct: 977 TNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSATPSQAQVE 1036
Query: 648 FPNEQENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSRDLVSNAC----FISK 703
E+ + PP + K HP + ++GD++ GV TRSR V++ C F+S
Sbjct: 1037 VEEEKAQDLPMPPRI----HTALSKDHPIDQVLGDISKGVQTRSR--VASICEHYSFVSC 1090
Query: 704 VEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNV 763
+EPK+V EAL D WI +M +EL F RN+VW LV R D NV+GTKW+FRNK DE+G V
Sbjct: 1091 LEPKHVDEALCDPDWINAMHKELNNFARNKVWTLVERLRDHNVIGTKWVFRNKQDENGLV 1150
Query: 764 TRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGY 823
RNK+R VAQG++Q+EG+DF ETFAPV RLE+I +LL A +L+QMDVKSAFLNG
Sbjct: 1151 VRNKARFVAQGFTQVEGLDFGETFAPVTRLEAICILLAFASCFNIKLFQMDVKSAFLNGE 1210
Query: 824 LNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKT 883
+ E V+VEQP GF DP +P+HVY+L KALYGLKQAPRAWYERL +FL++ + G +D T
Sbjct: 1211 IAELVFVEQPPGFEDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTT 1270
Query: 884 LFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQM 943
LF K G + V QIYVDDI+FG + ++F + M EFEMS++GEL++F GLQ+KQ+
Sbjct: 1271 LFTKIIGDDFFVCQIYVDDIIFGCTNEVFCKEFGDMMSREFEMSMIGELSFFHGLQIKQL 1330
Query: 944 EDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLY 1003
+D FGLE+A +TP AT+ L DE G VD LYRSMIGSLLY
Sbjct: 1331 KD--------------GTFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLY 1376
Query: 1004 LTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCD 1063
LTASRPDI F+V +CAR+QA PK HL+ VKRI++Y+ +S G+ Y L GY D
Sbjct: 1377 LTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSD 1436
Query: 1064 ADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQM 1123
+D+AG DRKSTSG C L +L+SW SKKQN V+L AEAEY++AGS C QL+WMKQ+
Sbjct: 1437 SDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALFIAEAEYVSAGSCCAQLLWMKQI 1496
Query: 1124 LKEYNVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTE 1183
L +Y + L C+N SAI I+ NP+QHSRTKHIDIRHHF+R+ V + + H+ TE
Sbjct: 1497 LLDYGISFTKTPLLCENDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTE 1556
Query: 1184 KQLADIFTKALDATQFEKLRQLLGICL 1210
QLADIFTK LD T+F KLR L +CL
Sbjct: 1557 DQLADIFTKPLDETRFCKLRNELNLCL 1583
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 894 bits (2309), Expect = 0.0
Identities = 477/1044 (45%), Positives = 649/1044 (61%), Gaps = 53/1044 (5%)
Query: 202 WYFDSGCSRHMTGVKSYLEKMKP--HAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDDVLL 259
W DSGC++HMTG ++ + + + VTFGD +KGK+ G+GK++ + ++D+V L
Sbjct: 549 WVLDSGCTQHMTGDRAMFTTFEVGRNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 608
Query: 260 VEGLTANLISISQLCDQGLKVVFKQSGCVVKNK-NKDVLMRGARSKDNCYMWTSETTFLS 318
V+ L NL+S++Q+CD L F +V + +K + +G R N Y+ ++ +
Sbjct: 609 VKSLNFNLLSVAQICDLSLSCAFFPQEVIVSSLLDKSCVFKGFRY-GNLYLVDFNSSEAN 667
Query: 319 AR-CLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGECQIGKQVK 377
+ CL++K +WH++L H+ + + + + V G+ +K ++ K+C CQ GKQV
Sbjct: 668 LKTCLVAKTSLGWLWHRRLAHVGMNQLSKFSKRDLVMGLKDVKFEKDKLCSACQAGKQVA 727
Query: 378 MSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTF 437
SH ++TSK LELLHMDL P +S+GG + V VDD+SR+TWV FL +KS
Sbjct: 728 CSHPTKSIMSTSKPLELLHMDLFDPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVA 787
Query: 438 EVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVE 497
++FK+ + Q E +VKIRS+ G EF+N ++C GIKHE A +PQQNGVVE
Sbjct: 788 DLFKKFAKRAQNEFSCTLVKIRSNIGSEFKNTNIEDYCDDLGIKHELFATYSPQQNGVVE 847
Query: 498 RKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVK 557
RKNRTL E AR ML + FWAEAINTAC+ NR+ + + T YE+ G+KP +
Sbjct: 848 RKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRVLKKTSYEVIVGRKPNIA 907
Query: 558 YFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVVDD 617
YF VFG KCYI K + + + G LGY+ S+AYRVYN ++ E+ +V D+
Sbjct: 908 YFRVFGCKCYIHRKGVRLTKFESRCDEGFLLGYASKSKAYRVYNKNKGIVEETADVQFDE 967
Query: 618 TSNERTGQAHDED------------------------DLPYECTNVEPDEPAI--QFPNE 651
T+ + G + +D D P T EP A+ Q E
Sbjct: 968 TNGSQEGHENLDDVGDEGLMRVMKNMSIGDVKPIEVEDKPSTSTQDEPSTSAMPSQAQVE 1027
Query: 652 QENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSRDLVSNAC----FISKVEPK 707
E +Q P + K HP + ++GD++ GV TRSR V++ C F+S +E K
Sbjct: 1028 VEEEKAQEPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSR--VTSICEHYSFVSCLERK 1085
Query: 708 NVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNK 767
+V EAL D W+ +M EEL F RN+VW LV RP D NV+GTKW+FRNK DE+G V RNK
Sbjct: 1086 HVDEALCDPDWMNAMHEELKNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRNK 1145
Query: 768 SRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEE 827
+RLVAQG++Q+EG+DF ETFAPVARLE+I +LL A +L+QMDVKSAFLN
Sbjct: 1146 ARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASCFDIKLFQMDVKSAFLN------ 1199
Query: 828 VYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVK 887
D +P+HVY+L KALYGL+QAPRAWYERL +FL++ + G +D TLF K
Sbjct: 1200 ----------DTKYPNHVYKLSKALYGLRQAPRAWYERLRDFLLSKDFKIGKVDITLFTK 1249
Query: 888 KNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTL 947
G + V QIYVDDI+FG + ++F + M EFEMS++GEL++FLGLQ+KQ+++
Sbjct: 1250 IIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNGT 1309
Query: 948 FITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTAS 1007
F++Q+KY K ++K+FGLE+A +TP AT+ L DE G VD LYRSMIGSLLYLT S
Sbjct: 1310 FVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTVS 1369
Query: 1008 RPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWA 1067
RPDI F+V +CAR+QA PK HL+ VKRI++Y+ +S G+ Y L GY D D+A
Sbjct: 1370 RPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDPDYA 1429
Query: 1068 GSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEY 1127
G DRKSTS C L +L+SW SKKQN V+LSTAE EY++AGS C QL+WMKQ L +Y
Sbjct: 1430 GCKVDRKSTSSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQTLLDY 1489
Query: 1128 NVQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLA 1187
+ L CDN AI I+ NP+QHSRTKHIDIRHHF+R+ V + + H+ TE QLA
Sbjct: 1490 GISFTKTPLLCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLA 1549
Query: 1188 DIFTKALDATQFEKLRQLLGICLF 1211
DIFTK LD T+F KLR L I F
Sbjct: 1550 DIFTKPLDETRFCKLRNELNIIDF 1573
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 875 bits (2260), Expect = 0.0
Identities = 470/1043 (45%), Positives = 639/1043 (61%), Gaps = 64/1043 (6%)
Query: 202 WYFDSGCSRHMTGVKSYLEKMKP--HAKSFVTFGDGAKGKIRGIGKLSDTGSPNLDDVLL 259
W DSGC++HMTG ++ + + + VTF D +K K+ G+GK++ + ++D+V
Sbjct: 524 WVLDSGCTQHMTGDRAMFTTFEVGGNEQEKVTFVDNSKRKVIGLGKIAISNDLSIDNVSF 583
Query: 260 VEGLTANLISISQLCDQGLKVVFKQSGCVVKNK-NKDVLMRGARSKDNCYMWTSETTFLS 318
V+ L NL+S++Q+CD GL F +V + +K + +G R + ++ + +
Sbjct: 584 VKSLNFNLLSVAQICDLGLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYFVDFNSSEANL 643
Query: 319 ARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEGKVCGECQIGKQVKM 378
CL++K +WH++L H+ + + ++ + V G+ +K ++ K+C CQ GKQV
Sbjct: 644 KTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVAC 703
Query: 379 SHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRFTWVEFLKEKSDTFE 438
SH ++TS+ LELLHMDL GP +S+GG + V VDD+SR+TWV FL +KS E
Sbjct: 704 SHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVAE 763
Query: 439 VFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEFSAPITPQQNGVVER 498
+FK++ + Q E +VKIRSD+G EF+N ++C GIKHE SA +PQQNGVVER
Sbjct: 764 LFKKIAKRAQNEFSCTLVKIRSDNGSEFKNTNIEDYCDDLGIKHELSATYSPQQNGVVER 823
Query: 499 KNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVTQYELWKGKKPTVKY 558
KNRTL E AR ML + FWAEAINTAC+ NR + + T YEL G+KP V Y
Sbjct: 824 KNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRFYLHRLLKNTSYELIVGRKPNVAY 883
Query: 559 FHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRTKVMMESINVVVDDT 618
F VFG KCYI K + + + G LGY+ NS+AYRVYN + E+ +V D+T
Sbjct: 884 FRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGTVEETADVQFDET 943
Query: 619 SNERTGQAHDED------------------------DLPYECTNVEPDEPAI--QFPNEQ 652
+ + G + +D D P T EP A Q E
Sbjct: 944 NGSQEGHENLDDVGDEGLIRAMKNMSFGDVKPIEVEDKPSTSTQDEPSTFATPSQAQVEV 1003
Query: 653 ENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRSRDLVSNAC----FISKVEPKN 708
E +Q P + K HP + ++GD++ GV T SR V++ C F+S +EPK+
Sbjct: 1004 EEEKAQDPPIPPRIHTTLSKDHPIDQVLGDISKGVQTLSR--VASICEHYSFVSCLEPKH 1061
Query: 709 VKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKS 768
V EAL D W+ +M EEL F RN+VW LV RP D NV+GTKW+FRNK DE+G V RNK+
Sbjct: 1062 VDEALCDPDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRNKA 1121
Query: 769 RLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEV 828
RLVAQG++Q+EG+DF ETFAPVARLE+I +LL A +L+QMDVKSAFLNG + E V
Sbjct: 1122 RLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASWFDIKLFQMDVKSAFLNGEIAELV 1181
Query: 829 YVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKK 888
+VEQP GF DP +P+H +++ G +D TLF K
Sbjct: 1182 FVEQPPGFEDPKYPNHDFKI-----------------------------GKVDTTLFTKI 1212
Query: 889 NGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLF 948
G + V QIYVDDI+FG + ++F + M EFEMS++GEL++FLGLQ+KQ++D F
Sbjct: 1213 IGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKDGTF 1272
Query: 949 ITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASR 1008
++Q+KY K ++K+FGLE+A +TP AT+ L DE G VD LYRSMIGSLLYLTASR
Sbjct: 1273 VSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASR 1332
Query: 1009 PDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAG 1068
PDI F+V +CA +QA PK HL+ VKRI++Y+ +S G+ Y L GY D+D+AG
Sbjct: 1333 PDIMFSVCMCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSDSDYAG 1392
Query: 1069 SADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYN 1128
DR STSG C L +L+SW SKKQN V+LSTAEAEY++AGS C QL+WMKQ L +Y
Sbjct: 1393 CKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYG 1452
Query: 1129 VQQDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLAD 1188
+ L CDN SAI I+ NP+QHSRTKHIDIRHHF+R+ V + + H+ TE QLAD
Sbjct: 1453 ISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLAD 1512
Query: 1189 IFTKALDATQFEKLRQLLGICLF 1211
IFTK LD T+F KLR L + F
Sbjct: 1513 IFTKPLDETRFCKLRNELNVIDF 1535
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 862 bits (2227), Expect = 0.0
Identities = 456/895 (50%), Positives = 583/895 (64%), Gaps = 42/895 (4%)
Query: 353 VRGIPKLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKR 412
+ G+ ++ ++ +VC CQ GKQ+ H +TT++ LELLHMDL GP+ S+GG +
Sbjct: 42 ILGLTNIQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMDLFGPIAYLSIGGNK 101
Query: 413 YVFVCVDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFS 472
Y V VDDFS FTWV FL +KS+T +FK+ + Q E I IRSD+ KEF+N
Sbjct: 102 YGLVIVDDFSCFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNVKEFKNTCIE 161
Query: 473 EFCSSEGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIH 532
F EGIKHEFSAP +PQQNGV ERKNRTL E AR ML FWAEA+NT C+
Sbjct: 162 SFLDEEGIKHEFSAPYSPQQNGVAERKNRTLIEIARTMLDEYKTSDRFWAEAVNTVCHDI 221
Query: 533 NRVTIRQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSG 592
NR+ + + T YEL G KP V YF VFGSKCYIL+ + K PK + G LGY
Sbjct: 222 NRLYLHRLLKKTPYELLTGNKPNVSYFRVFGSKCYILNKKARSSKFAPKVDGGFLLGYGS 281
Query: 593 NSRAYRVYNIRTKVMMESINVVVDDTSNERTGQAHD----EDDLPYEC------------ 636
N AYRV+N + ++ + +V D+T+ + Q E++ P E
Sbjct: 282 NECAYRVFNKTSGIVEIAPDVTFDETNGSQVEQVDSHVLGEEEDPREAIKRLALGDVRPR 341
Query: 637 ---------TNVEP------DEPAIQFPNEQENTVSQPPLATK--EPSIR--VQKIHPKE 677
T VEP ++P+ ++ E PP + P I +Q+ HP +
Sbjct: 342 EPQQGASSSTQVEPPTSTQANDPSTSSLDQGEEGEQVPPSSINLAHPRIHQSIQRDHPTD 401
Query: 678 NIIGDLNDGVITRSRDLVSNAC----FISKVEPKNVKEALTDEFWIQSMQEELGQFKRNE 733
NI+GD+N GV TRS ++N C F+S +EP V+EAL D W+ +MQEEL F RNE
Sbjct: 402 NILGDINKGVSTRSH--IANFCEHYSFVSSLEPLRVEEALNDPDWVMAMQEELNNFTRNE 459
Query: 734 VWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSRLVAQGYSQIEGIDFYETFAPVARL 793
VW LV R NV+GTKWIFRNK DE+G V RNK+RLVAQG++QIEG+DF ETFAPVARL
Sbjct: 460 VWTLVERSRQ-NVIGTKWIFRNKQDEAGVVIRNKARLVAQGFTQIEGLDFGETFAPVARL 518
Query: 794 ESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALY 853
ESIR+LL A L F+LYQMDVKSAFLNG +NE VYVEQP GF DP +P+HVY+L KALY
Sbjct: 519 ESIRILLTFATNLNFKLYQMDVKSAFLNGLINELVYVEQPPGFKDPKYPNHVYKLHKALY 578
Query: 854 GLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMV 913
LKQAPRAWYE L FL+ NG++ G D TLF K++ ++ V QIYVDDI+FG +
Sbjct: 579 ELKQAPRAWYECLRNFLVKNGFEIGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFS 638
Query: 914 EQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTP 973
E+F M FEMS++GEL +FLGLQ+KQ+++ FI Q+KY K ++KKFG+ENA TP
Sbjct: 639 EEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLKDMLKKFGMENAKPIHTP 698
Query: 974 AATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKTSHLIQV 1033
++ L +E+G DVD +YRS+IGSLLYL ASRPDI +V +CAR+QA PK HL+ V
Sbjct: 699 MPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVCMCARFQAAPKECHLVAV 758
Query: 1034 KRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSK 1093
KRI++Y+ T + G+ Y L GY DAD+AG DRKSTSG C FL +L+SW SK
Sbjct: 759 KRILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSWSSK 818
Query: 1094 KQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMTLFCDNLSAINISKNPIQH 1153
KQN V+LSTAEAEYI+ GS C QL+WMKQ L++Y + + L CDN SAI I+ NP+QH
Sbjct: 819 KQNSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPLLCDNESAIKIANNPVQH 878
Query: 1154 SRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEKLRQLLGI 1208
SRTKHIDIRHHF+R+ G + ++HV +KQLADIFTK LD +F +LR L I
Sbjct: 879 SRTKHIDIRHHFLRDHSTRGDIDIQHVRIDKQLADIFTKPLDEARFCELRSELNI 933
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 850 bits (2196), Expect = 0.0
Identities = 471/1058 (44%), Positives = 637/1058 (59%), Gaps = 60/1058 (5%)
Query: 188 LIAHTSLRASSKEDWYFDSGCSR-HMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIGKL 246
L+A S + +S D D C + S E++ +A FV K R +G L
Sbjct: 93 LMAKGSFKVTSLSDSESDDDCDDVSYDELVSMFEELHAYATRFVKSNGKYCSKCREVGHL 152
Query: 247 SD--TG-SPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARS 303
+ TG S + D + + +T D+ + F+ V+ K ++ + G S
Sbjct: 153 VNYRTGWSHWVLDSVCTQRMTG---------DRAMFTTFE-----VEGKEQEKVTFGDNS 198
Query: 304 KDNCYMWTSETTFLSARCLMSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQE 363
K N ++T+F +WH++L H+ + + ++ + V G+ +K ++
Sbjct: 199 KRNVIGLVAKTSF------------GWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEK 246
Query: 364 GKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSR 423
K+C CQ KQV SH ++TS+ LELLHMDL GP +S+GG + V VDD+S
Sbjct: 247 DKLCSACQASKQVACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNSHCLVIVDDYSC 306
Query: 424 FTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHE 483
+TWV FL +K E+FK+ + Q E +VKIRSD+G +F+N ++C IKHE
Sbjct: 307 YTWVFFLHDKCIVAELFKKFAKRAQNEFSCTLVKIRSDNGSKFKNTNIEDYCDDLSIKHE 366
Query: 484 FSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTV 543
SA +PQQNGVVERKNRTL E AR ML + FWAEAINTAC+ NR+ + +
Sbjct: 367 LSATYSPQQNGVVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKK 426
Query: 544 TQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIR 603
T YEL G+KP V YF VFG KCYI K + + + G LGY+ NS+AYRVYN
Sbjct: 427 TSYELIVGRKPNVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKN 486
Query: 604 TKVMMESINVVVDDTSNERTGQAHDED------------------------DLPYECTNV 639
++ E+ +V D+T+ + G + +D D P T
Sbjct: 487 KGIVEETADVQFDETNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQD 546
Query: 640 EPDEPAI--QFPNEQENTVSQPPLATKEPSIRVQKIHPKENIIGDLNDGVITRS--RDLV 695
EP A Q E E +Q P + K HP + ++GD++ GV TRS +
Sbjct: 547 EPSTSASPSQAQVEVEKEKAQDPPMPPRIYTALSKDHPIDQVLGDISKGVQTRSPVASIC 606
Query: 696 SNACFISKVEPKNVKEALTDEFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRN 755
+ F+S +EPK+V EAL D W+ ++ EEL F RN+VW LV RP D NV+GTKW+FRN
Sbjct: 607 EHYSFVSCLEPKHVDEALYDPDWMNAIHEELNNFARNKVWTLVERPRDHNVIGTKWVFRN 666
Query: 756 KSDESGNVTRNKSRLVAQGYSQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDV 815
K DE+ V RNK+RLVAQG++Q+E +DF ETF PVARLE+IR+LL A +L+QMDV
Sbjct: 667 KQDENRLVVRNKARLVAQGFTQVEDLDFGETFGPVARLEAIRILLAFASCFDIKLFQMDV 726
Query: 816 KSAFLNGYLNEEVYVEQPKGFVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGY 875
KSAFLNG + E V+VEQP GF DP +P+HVY+L KALYGLKQAPRAWYERL +FL++ +
Sbjct: 727 KSAFLNGEIAELVFVEQPPGFDDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDF 786
Query: 876 DKGGIDKTLFVKKNGGELMVAQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYF 935
G +D TLF K G + V QIYVDDI+FG + ++F + M EFEMS++ EL++F
Sbjct: 787 KIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIEELSFF 846
Query: 936 LGLQVKQMEDTLFITQSKYAKGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYR 995
LGLQ+KQ++D F++Q+KY K ++K+FGLE+A +TP AT+ L DE G VD LYR
Sbjct: 847 LGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNWHLDLDEGGKPVDLKLYR 906
Query: 996 SMIGSLLYLTASRPDITFAVGVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTN 1055
SMIGSLLYLTASRPDI F+V + AR+QA PK HL+ VKRI++Y+ +S + Y
Sbjct: 907 SMIGSLLYLTASRPDIMFSVCMYARFQAAPKECHLVAVKRILRYLKHSSTISLWYPKGAK 966
Query: 1056 SGLTGYCDADWAGSADDRKSTSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCT 1115
L GY D+D+AG DRKSTSG C L +L+SW SKKQN V+LSTAEAEYI+AGS C
Sbjct: 967 FKLVGYSDSDYAGYKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYISAGSCCA 1026
Query: 1116 QLMWMKQMLKEYNVQ--QDVMTLFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDG 1173
QL+WMKQ+L +Y + + L C+N S I I+ NP+QH RTKHIDIRHHF+ + V
Sbjct: 1027 QLLWMKQILLDYGISFTETQTPLLCNNDSTIKIANNPVQHFRTKHIDIRHHFLTDHVAKC 1086
Query: 1174 TVTLEHVSTEKQLADIFTKALDATQFEKLRQLLGICLF 1211
+ + H+ TE QLADIFTK LD T+F KLR L + F
Sbjct: 1087 DIVISHIRTEDQLADIFTKPLDETRFCKLRNELNVINF 1124
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 803 bits (2075), Expect = 0.0
Identities = 429/1094 (39%), Positives = 648/1094 (59%), Gaps = 44/1094 (4%)
Query: 133 YQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKSPGKSRWKPKVNATALIAHT 192
Y S+ +C+ CG+FGH C K+P +++ K N
Sbjct: 274 YDKSSVKCYNCGKFGHYASEC------------------KAPSNKKFEEKANYVEEKIQE 315
Query: 193 S---LRASSKED-------WYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRG 242
L AS K+D WY DSG S HM G KS ++ + V GD +K +++G
Sbjct: 316 EDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKG 375
Query: 243 IG----KLSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLM 298
G +L + + +V + + N++S+ QL ++G + K + ++++ +++
Sbjct: 376 KGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLIT 435
Query: 299 RGARSKDNCYMWTSETTFLSARCL-MSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIP 357
+ SK+ ++ A+CL M ++E +WH + GHLN ++ + +E VRG+P
Sbjct: 436 KVPMSKNRMFVLNIRNDI--AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLP 493
Query: 358 KLKIQEGKVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVC 417
+ +VC C +GKQ KMS K K LEL+H D+ GP++ +SLG Y +
Sbjct: 494 CIN-HPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLF 552
Query: 418 VDDFSRFTWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSS 477
+DDFSR TWV FLKEKS+ FE+FK+ V++E G I +RSD G EF + +F ++C
Sbjct: 553 IDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCED 612
Query: 478 EGIKHEFSAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTI 537
GI+ + + P +PQQNGVVERKNRT+ E AR+ML +K LP WAEA+ A Y+ NR
Sbjct: 613 NGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPT 672
Query: 538 RQGDTVTQYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAY 597
+ T E W G+KP V + VFGS + E R KLD KSE IF+GY NS+ Y
Sbjct: 673 KSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGY 732
Query: 598 RVYNIRTKVMMESINVVVDDTSNERTGQAHDEDDLPYECTNVEPDEPAIQFPNEQENTVS 657
++YN TK + S N+V D+ E +++ED + + EP + P +E T
Sbjct: 733 KLYNPDTKKTIISRNIVFDE-EGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTT- 790
Query: 658 QPPLATKEPSIRVQKIH--PKENIIGDLNDGVITRSRDLVSNACFISKVEPKNVKEALTD 715
PP + I P+ I +L + +T +++ ++ C ++ EP + ++A+
Sbjct: 791 -PPTSPTSSQIEESSSERTPRFRSIQELYE--VTENQENLTLFCLFAECEPMDFQKAIEK 847
Query: 716 EFWIQSMQEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSRLVAQGY 775
+ W +M EE+ ++N+ WEL P+ +G KW+++ K + G V R K+RLVA+GY
Sbjct: 848 KTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGY 907
Query: 776 SQIEGIDFYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYVEQPKG 835
SQ GID+ E FAPVARLE++RL++ +A K++++QMDVKSAFLNG L EEVY+EQP+G
Sbjct: 908 SQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQG 967
Query: 836 FVDPSFPDHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKNGGELMV 895
++ D V RLKK LYGLKQAPRAW R+ ++ + K + L++K ++++
Sbjct: 968 YIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILI 1027
Query: 896 AQIYVDDIVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFITQSKYA 955
A +YVDD++F G + + E+F ++M EFEM+ +G ++Y+LG++VKQ ++ +FITQ YA
Sbjct: 1028 ACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYA 1087
Query: 956 KGIVKKFGLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASRPDITFAV 1015
K ++KKF ++++ TP IKL+K E+G VDP+ ++S++GSL YLT +RPDI +AV
Sbjct: 1088 KEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAV 1147
Query: 1016 GVCARYQAEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGSADDRKS 1075
GV +RY P T+H KRI++YI GT ++G+ YS ++ L GY D+DW G DDRKS
Sbjct: 1148 GVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKS 1207
Query: 1076 TSGGCFFLENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMT 1135
TSG F++ + +W SKKQ V+LST EAEY+AA S +W++ +LKE ++ Q+ T
Sbjct: 1208 TSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPT 1267
Query: 1136 -LFCDNLSAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKAL 1194
+F DN SAI ++KNP+ H R+KHID R+H+IRE V V LE+V T Q+AD FTK L
Sbjct: 1268 KIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPL 1327
Query: 1195 DATQFEKLRQLLGI 1208
F K+R LLG+
Sbjct: 1328 KRENFIKMRSLLGV 1341
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 803 bits (2074), Expect = 0.0
Identities = 426/1087 (39%), Positives = 651/1087 (59%), Gaps = 30/1087 (2%)
Query: 133 YQNSTWRCHYCGRFGHIRPYCFKLYGYPILQDVSREYEKKSPGKSRWKPKVNATALIAHT 192
Y S+ +C+ CG+FGH C ++++E+K+ + + K+ ++
Sbjct: 274 YDKSSVKCYNCGKFGHYASEC--------KAPSNKKFEEKA---NYVEEKIQEEDMLLMA 322
Query: 193 SLRASSKED---WYFDSGCSRHMTGVKSYLEKMKPHAKSFVTFGDGAKGKIRGIG----K 245
S + +E+ WY DSG S HM G KS ++ + V GD +K +++G G +
Sbjct: 323 SYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIR 382
Query: 246 LSDTGSPNLDDVLLVEGLTANLISISQLCDQGLKVVFKQSGCVVKNKNKDVLMRGARSKD 305
L + + +V + + N++S+ QL ++G + K + ++++ +++ + SK+
Sbjct: 383 LKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKN 442
Query: 306 NCYMWTSETTFLSARCL-MSKEDEVRIWHQKLGHLNLKSMKRIVAEEAVRGIPKLKIQEG 364
++ A+CL M ++E +WH + GHLN ++ + +E VRG+P +
Sbjct: 443 RMFVLNIRNDI--AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPN 499
Query: 365 KVCGECQIGKQVKMSHQKLQHLTTSKVLELLHMDLMGPMQVESLGGKRYVFVCVDDFSRF 424
+VC C +GKQ KMS K K LEL+H D+ GP++ +SLG Y + +DDFSR
Sbjct: 500 QVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRK 559
Query: 425 TWVEFLKEKSDTFEVFKELCLQVQREKGSGIVKIRSDHGKEFENGQFSEFCSSEGIKHEF 484
TWV FLKEKS+ FE+FK+ V++E G I +RSD G EF + +F ++C GI+ +
Sbjct: 560 TWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQL 619
Query: 485 SAPITPQQNGVVERKNRTLQESARAMLHAKNLPYHFWAEAINTACYIHNRVTIRQGDTVT 544
+ P +PQQNGV ERKNRT+ E AR+ML +K LP WAEA+ A Y+ NR + T
Sbjct: 620 TVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKT 679
Query: 545 QYELWKGKKPTVKYFHVFGSKCYILSDREHRRKLDPKSEVGIFLGYSGNSRAYRVYNIRT 604
E W G+K V + VFGS + E R KLD KSE IF+GY NS+ Y++YN T
Sbjct: 680 PQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDT 739
Query: 605 KVMMESINVVVDDTSNERTGQAHDEDDLPYECTNVEPDEPAIQFPNEQENTVSQPPLATK 664
K + S N+V D+ E +++ED + + EP + P +E T PP +
Sbjct: 740 KKTIISRNIVFDE-EGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTT--PPTSPT 796
Query: 665 EPSIRVQKIH--PKENIIGDLNDGVITRSRDLVSNACFISKVEPKNVKEALTDEFWIQSM 722
I P+ I +L + +T +++ ++ C ++ EP + +EA+ + W +M
Sbjct: 797 SSQIEESSSERTPRFRSIQELYE--VTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAM 854
Query: 723 QEELGQFKRNEVWELVPRPDDANVVGTKWIFRNKSDESGNVTRNKSRLVAQGYSQIEGID 782
EE+ ++N+ WEL P+ +G KW+++ K + G V R K+RLVA+GY Q GID
Sbjct: 855 DEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGID 914
Query: 783 FYETFAPVARLESIRLLLGVACLLKFRLYQMDVKSAFLNGYLNEEVYVEQPKGFVDPSFP 842
+ E FAPVARLE++RL++ +A K++++QMDVKSAFLNG L EEVY+EQP+G++
Sbjct: 915 YDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEE 974
Query: 843 DHVYRLKKALYGLKQAPRAWYERLTEFLINNGYDKGGIDKTLFVKKNGGELMVAQIYVDD 902
D V RLKKALYGLKQAPRAW R+ ++ + K + L++K ++++A +YVDD
Sbjct: 975 DKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDD 1034
Query: 903 IVFGGMSNQMVEQFVEQMKSEFEMSLVGELTYFLGLQVKQMEDTLFITQSKYAKGIVKKF 962
++F G + M E+F ++M EFEM+ +G ++Y+LG++VKQ ++ +FITQ YAK ++KKF
Sbjct: 1035 LIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKF 1094
Query: 963 GLENAGHKRTPAATHIKLTKDEKGTDVDPSLYRSMIGSLLYLTASRPDITFAVGVCARYQ 1022
++++ TP IKL+K E+G VDP+ ++S++GSL YLT +RPDI +AVGV +RY
Sbjct: 1095 KMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYM 1154
Query: 1023 AEPKTSHLIQVKRIIKYISGTSDYGILYSHNTNSGLTGYCDADWAGSADDRKSTSGGCFF 1082
P T+H KRI++YI GT ++G+ YS ++ L GY D+DW G DDRKSTSG F+
Sbjct: 1155 EHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFY 1214
Query: 1083 LENNLISWFSKKQNCVSLSTAEAEYIAAGSSCTQLMWMKQMLKEYNVQQDVMT-LFCDNL 1141
+ + +W SKKQ V LST EAEY+AA S +W++ +LKE ++ Q+ T +F DN
Sbjct: 1215 IGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNK 1274
Query: 1142 SAINISKNPIQHSRTKHIDIRHHFIRELVEDGTVTLEHVSTEKQLADIFTKALDATQFEK 1201
SAI ++KNP+ H R+KHID R+H+IRE V V LE+V T Q+ADIFTK L F K
Sbjct: 1275 SAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIK 1334
Query: 1202 LRQLLGI 1208
+R LLG+
Sbjct: 1335 MRSLLGV 1341
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,033,842,885
Number of Sequences: 2540612
Number of extensions: 86179861
Number of successful extensions: 224408
Number of sequences better than 10.0: 4651
Number of HSP's better than 10.0 without gapping: 3943
Number of HSP's successfully gapped in prelim test: 708
Number of HSP's that attempted gapping in prelim test: 213619
Number of HSP's gapped (non-prelim): 6836
length of query: 1213
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1073
effective length of database: 507,674,714
effective search space: 544734968122
effective search space used: 544734968122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0172.5