BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0172.11
(148 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD13388.1| ribosomal protein L27a [Petunia x hybrida] 272 1e-72
dbj|BAA96068.1| 60S ribosomal protein L27a [Panax ginseng] 265 2e-70
gb|AAM62795.1| 60S ribosomal protein L27A [Arabidopsis thaliana] 261 3e-69
emb|CAA63025.1| 60S ribosomal protein L27a [Arabidopsis thaliana... 260 4e-69
gb|AAN18111.1| At1g23290/F26F24_23 [Arabidopsis thaliana] gi|131... 254 3e-67
ref|XP_468609.1| putative ribosomal protein L27a [Oryza sativa (... 249 7e-66
dbj|BAD27612.1| putative 60S ribosomal protein L27a [Oryza sativ... 249 1e-65
ref|XP_479144.1| putative 60S ribosomal protein L27a [Oryza sati... 241 2e-63
ref|NP_703842.1| 60S ribosomal protein L27a, putative [Plasmodiu... 224 3e-58
gb|EAA22942.1| ribosomal protein L27a [Plasmodium yoelii yoelii] 223 6e-58
gb|AAN05585.1| ribosomal protein L22 [Argopecten irradians] 222 2e-57
emb|CAH96683.1| 60S ribosomal protein L27a, putative [Plasmodium... 221 2e-57
emb|CAI74670.1| 60S ribosomal protein L27a, putative [Theileria ... 217 4e-56
ref|XP_543038.1| PREDICTED: similar to ribosomal protein L27a [C... 213 8e-55
ref|NP_036105.2| ribosomal protein L27a [Mus musculus] gi|565410... 213 1e-54
ref|XP_215041.3| PREDICTED: similar to 60S ribosomal protein L27... 213 1e-54
emb|CAA36947.1| unnamed protein product [Rattus rattus] gi|13284... 213 1e-54
dbj|BAE01101.1| unnamed protein product [Macaca fascicularis] 212 2e-54
emb|CAH89675.1| hypothetical protein [Pongo pygmaeus] gi|1352909... 211 2e-54
ref|XP_629601.1| 60S ribosomal protein L27a [Dictyostelium disco... 211 2e-54
>gb|AAD13388.1| ribosomal protein L27a [Petunia x hybrida]
Length = 150
Score = 272 bits (696), Expect = 1e-72
Identities = 130/150 (86%), Positives = 138/150 (91%), Gaps = 2/150 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQ--AANDKSKAPVIDVTNYGYFKVLGKGVLPA 118
FHKLRN+F+CPTVNIDKLWSL+PQ+VKD+ A K AP+IDVT YGYFKVLGKGVLP
Sbjct: 61 FHKLRNKFYCPTVNIDKLWSLVPQDVKDKVAAGGAKGTAPLIDVTQYGYFKVLGKGVLPE 120
Query: 119 NQPVVVKAKLISKIAEKKIKENGGAVLLTA 148
NQ VVVKAKL+SK AEKKIKE GGAV+LTA
Sbjct: 121 NQAVVVKAKLVSKNAEKKIKEAGGAVVLTA 150
>dbj|BAA96068.1| 60S ribosomal protein L27a [Panax ginseng]
Length = 146
Score = 265 bits (677), Expect = 2e-70
Identities = 124/148 (83%), Positives = 135/148 (90%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKN KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNXKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FH+LRN+F+CP VNIDKLWSLLPQE K++A D APVIDVT +GYFKVLGKG LP++
Sbjct: 61 FHRLRNKFYCPVVNIDKLWSLLPQEAKEKA--DAQNAPVIDVTQHGYFKVLGKGFLPSSH 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKL+SK AEKKIKE GGAV+LTA
Sbjct: 119 PIVVKAKLVSKTAEKKIKEAGGAVVLTA 146
>gb|AAM62795.1| 60S ribosomal protein L27A [Arabidopsis thaliana]
Length = 146
Score = 261 bits (666), Expect = 3e-69
Identities = 123/148 (83%), Positives = 135/148 (91%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+FFCP VN+DKLWSL+P++VK A + K+ P+IDVT +G+FKVLGKG LP N+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSTKNNVPLIDVTQHGFFKVLGKGHLPENK 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>emb|CAA63025.1| 60S ribosomal protein L27a [Arabidopsis thaliana]
gi|20147177|gb|AAM10305.1| At1g70600/F5A18_22
[Arabidopsis thaliana] gi|15223190|ref|NP_177217.1| 60S
ribosomal protein L27A (RPL27aC) [Arabidopsis thaliana]
gi|15081672|gb|AAK82491.1| At1g70600/F5A18_22
[Arabidopsis thaliana] gi|14517370|gb|AAK62576.1|
At1g70600/F5A18_22 [Arabidopsis thaliana]
gi|1710530|sp|P49637|RL27C_ARATH 60S ribosomal protein
L27a-3 gi|12325037|gb|AAG52464.1| 60S ribosomal protein
L27A; 71521-71081 [Arabidopsis thaliana]
gi|12324756|gb|AAG52338.1| 60S ribosomal protein L27A;
82981-83421 [Arabidopsis thaliana]
Length = 146
Score = 260 bits (665), Expect = 4e-69
Identities = 123/148 (83%), Positives = 134/148 (90%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+FFCP VN+DKLWSL+P++VK A + K P+IDVT +G+FKVLGKG LP N+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSTKDNVPLIDVTQHGFFKVLGKGHLPENK 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>gb|AAN18111.1| At1g23290/F26F24_23 [Arabidopsis thaliana]
gi|13194820|gb|AAK15572.1| putative 60s ribosomal
protein l27a [Arabidopsis thaliana]
gi|11692928|gb|AAG40067.1| At1g23290 [Arabidopsis
thaliana] gi|15220698|ref|NP_173743.1| 60S ribosomal
protein L27A (RPL27aB) [Arabidopsis thaliana]
gi|15294178|gb|AAK95266.1| At1g23290/F26F24_23
[Arabidopsis thaliana] gi|20143883|sp|Q9LR33|RL27A_ARATH
60S ribosomal protein L27a-2 gi|9295692|gb|AAF86998.1|
F26F24.13 [Arabidopsis thaliana]
Length = 146
Score = 254 bits (649), Expect = 3e-67
Identities = 120/148 (81%), Positives = 131/148 (88%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M T KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRN+FFCP VN+DKLWSL+P++VK A + K P+IDVT +G+FKVLGKG LP N+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSSKDNVPLIDVTQHGFFKVLGKGHLPENK 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>ref|XP_468609.1| putative ribosomal protein L27a [Oryza sativa (japonica
cultivar-group)] gi|30017566|gb|AAP12988.1| putative
ribosomal protein L27a [Oryza sativa (japonica
cultivar-group)]
Length = 146
Score = 249 bits (637), Expect = 7e-66
Identities = 117/148 (79%), Positives = 130/148 (87%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKL N+F CP VN+++LWS++P + +A KAPVIDVT +GY KVLGKG+LP +
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTDKAAEAG--AGKAPVIDVTQFGYTKVLGKGMLPPQR 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKLISK+AEKKIK GGAVLLTA
Sbjct: 119 PIVVKAKLISKVAEKKIKAAGGAVLLTA 146
>dbj|BAD27612.1| putative 60S ribosomal protein L27a [Oryza sativa (japonica
cultivar-group)]
Length = 144
Score = 249 bits (635), Expect = 1e-65
Identities = 117/148 (79%), Positives = 129/148 (87%), Gaps = 4/148 (2%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FH+L N+F CP VN+++LWS++P E A KAPVIDVT +GY KVLGKG+LP +
Sbjct: 61 FHRLSNRFHCPAVNVERLWSMVPAE----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPER 116
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKLISK+AEKKIK GGAVLLTA
Sbjct: 117 PIVVKAKLISKVAEKKIKAAGGAVLLTA 144
>ref|XP_479144.1| putative 60S ribosomal protein L27a [Oryza sativa (japonica
cultivar-group)] gi|24059854|dbj|BAC21322.1| putative
60S ribosomal protein L27a [Oryza sativa (japonica
cultivar-group)] gi|23237917|dbj|BAC16490.1| putative
60S ribosomal protein L27a [Oryza sativa (japonica
cultivar-group)]
Length = 146
Score = 241 bits (616), Expect = 2e-63
Identities = 113/148 (76%), Positives = 131/148 (88%), Gaps = 2/148 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTT +KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FH+LRN+F+ P VN+++LWS++P E +AA KAP++DVT +GYFKVLGKG+LP +
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAG-AGKAPLLDVTQFGYFKVLGKGLLP-EK 118
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKAKLISK+AEKKIK GGAV+LTA
Sbjct: 119 PIVVKAKLISKVAEKKIKAAGGAVVLTA 146
>ref|NP_703842.1| 60S ribosomal protein L27a, putative [Plasmodium falciparum 3D7]
gi|46361134|emb|CAG24998.1| 60S ribosomal protein L27a,
putative; putative 60S ribosomal protein l27a
[Plasmodium falciparum 3D7]
Length = 148
Score = 224 bits (572), Expect = 3e-58
Identities = 103/148 (69%), Positives = 120/148 (80%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRFKKNRKKRGHVSAGHGR+GKHRKHPGGRG AGG+HH RI FDKYHPGYFGKVGMR+
Sbjct: 1 MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
+ L+N+ +CPT+N+DKLW LLP+E K + + +K APVIDVT GYFKVLG G L NQ
Sbjct: 61 LNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQ 120
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKA+ S +AEKKIK GG +L A
Sbjct: 121 PIVVKARYFSSVAEKKIKAVGGQCILVA 148
>gb|EAA22942.1| ribosomal protein L27a [Plasmodium yoelii yoelii]
Length = 148
Score = 223 bits (569), Expect = 6e-58
Identities = 106/148 (71%), Positives = 120/148 (80%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRG AGGMHH RI FDKYHPGYFGKVGMR+
Sbjct: 1 MATRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGKAGGMHHMRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
+ L+N+ +C T+NIDKLW LLP+E K + A +++ APVIDVT GYFKVLG G L NQ
Sbjct: 61 LNLLKNRKYCRTINIDKLWGLLPEEKKQEFAKNENIAPVIDVTRVGYFKVLGNGNLEHNQ 120
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKA+ S IAEKKIK GG +L A
Sbjct: 121 PIVVKARYFSSIAEKKIKAVGGQCILVA 148
>gb|AAN05585.1| ribosomal protein L22 [Argopecten irradians]
Length = 152
Score = 222 bits (565), Expect = 2e-57
Identities = 103/146 (70%), Positives = 119/146 (80%), Gaps = 1/146 (0%)
Query: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62
T+ KK RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI FDKYHPGYFGKVGMRY+H
Sbjct: 8 TKLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRYYH 67
Query: 63 KLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQPV 122
K +N+FFCPTVN+DKLWSL+ + +++ A+ K KAPVIDV GY+KVLGKG LP QPV
Sbjct: 68 KTQNKFFCPTVNLDKLWSLVSDQTREKYASSKDKAPVIDVVRAGYYKVLGKGHLP-KQPV 126
Query: 123 VVKAKLISKIAEKKIKENGGAVLLTA 148
+VKA+ S+ AE KIK GGA +L A
Sbjct: 127 IVKARFFSRSAELKIKAAGGACVLVA 152
>emb|CAH96683.1| 60S ribosomal protein L27a, putative [Plasmodium berghei]
Length = 148
Score = 221 bits (564), Expect = 2e-57
Identities = 104/148 (70%), Positives = 120/148 (80%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRG AGGMHH RI FDKYHPGYFGKVGMR+
Sbjct: 1 MATRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGKAGGMHHMRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
+ L+N+ +C T+N+DKLW LLP+E K + A +++ APVIDVT GYFKVLG G L NQ
Sbjct: 61 LNLLKNRKYCRTINVDKLWGLLPEEKKKEFAKNENIAPVIDVTRVGYFKVLGNGHLEHNQ 120
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKA+ S +AEKKIK GG +L A
Sbjct: 121 PIVVKARYFSSMAEKKIKAVGGQCILVA 148
>emb|CAI74670.1| 60S ribosomal protein L27a, putative [Theileria annulata]
Length = 147
Score = 217 bits (553), Expect = 4e-56
Identities = 102/148 (68%), Positives = 122/148 (81%), Gaps = 1/148 (0%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
MTTRFKK+RK RGHVSAGHGR+GKHRKHPGGRG AGG HHRILFDK+HPGYFGKVGMR+
Sbjct: 1 MTTRFKKSRKLRGHVSAGHGRVGKHRKHPGGRGKAGGDSHHRILFDKFHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
FHKLRNQ+F TVN+++LW L+P+E + + A+ APV+DV GYFKVLG G +P +
Sbjct: 61 FHKLRNQYFMRTVNVNQLWDLVPEETRKEYADKPDMAPVLDVMQSGYFKVLGTGNMPP-R 119
Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
P+VVKA+L SK AE+KIKE GGA +L A
Sbjct: 120 PLVVKARLFSKTAERKIKEAGGACVLVA 147
>ref|XP_543038.1| PREDICTED: similar to ribosomal protein L27a [Canis familiaris]
gi|57102660|ref|XP_534046.1| PREDICTED: similar to
ribosomal protein L27a [Canis familiaris]
gi|58760364|gb|AAW82092.1| ribosomal protein L27a-like
[Bos taurus] gi|66792780|ref|NP_001019642.1| ORF protein
[Bos taurus]
Length = 148
Score = 213 bits (542), Expect = 8e-55
Identities = 102/149 (68%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPAN 119
+H RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLP-K 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QPV+VKAK S+ AE+KIK GGA +L A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>ref|NP_036105.2| ribosomal protein L27a [Mus musculus] gi|56541066|gb|AAH86939.1|
Ribosomal protein L27a [Mus musculus]
gi|34784170|gb|AAH56958.1| Ribosomal protein L27a [Mus
musculus] gi|13992534|emb|CAC38113.1| ribosmal protein
L27a [Mus musculus] gi|51980687|gb|AAH81430.1| Ribosomal
protein L27a [Mus musculus] gi|12845615|dbj|BAB26822.1|
unnamed protein product [Mus musculus]
gi|12842769|dbj|BAB25724.1| unnamed protein product [Mus
musculus] gi|12841646|dbj|BAB25295.1| unnamed protein
product [Mus musculus]
Length = 148
Score = 213 bits (541), Expect = 1e-54
Identities = 102/149 (68%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPAN 119
+H RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLP-K 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QPV+VKAK S+ AE+KIK GGA +L A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>ref|XP_215041.3| PREDICTED: similar to 60S ribosomal protein L27a [Rattus
norvegicus]
Length = 194
Score = 213 bits (541), Expect = 1e-54
Identities = 102/149 (68%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 47 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 106
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPAN 119
+H RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP
Sbjct: 107 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLP-K 165
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QPV+VKAK S+ AE+KIK GGA +L A
Sbjct: 166 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 194
>emb|CAA36947.1| unnamed protein product [Rattus rattus]
gi|132846|sp|P18445|RL27A_RAT 60S ribosomal protein L27a
gi|227227|prf||1617101A ribosomal protein L27a
Length = 148
Score = 213 bits (541), Expect = 1e-54
Identities = 102/149 (68%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPAN 119
+H RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLP-K 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QPV+VKAK S+ AE+KIK GGA +L A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>dbj|BAE01101.1| unnamed protein product [Macaca fascicularis]
Length = 148
Score = 212 bits (539), Expect = 2e-54
Identities = 101/149 (67%), Positives = 120/149 (79%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPAN 119
+H RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLP-K 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QPV+VKAK S+ AE+KIK GGA +L A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>emb|CAH89675.1| hypothetical protein [Pongo pygmaeus] gi|13529098|gb|AAH05326.1|
Ribosomal protein L27a [Homo sapiens]
gi|60393659|sp|Q5REY2|RL27A_PONPY 60S ribosomal protein
L27a gi|1173017|sp|P46776|RL27A_HUMAN 60S ribosomal
protein L27a gi|550017|gb|AAA85656.1| ribosomal protein
L27a gi|4760602|dbj|BAA77361.1| ribosomal protein L27A
[Homo sapiens] gi|1096940|prf||2113200C ribosomal
protein L27a gi|4506625|ref|NP_000981.1| ribosomal
protein L27a [Homo sapiens]
Length = 148
Score = 211 bits (538), Expect = 2e-54
Identities = 100/149 (67%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPGYFGKVGM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKS-KAPVIDVTNYGYFKVLGKGVLPAN 119
+H RNQ FCPTVN+DKLW+L+ ++ + AA +K+ AP+IDV GY+KVLGKG LP
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLP-K 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QPV+VKAK S+ AE+KIK GGA +L A
Sbjct: 120 QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>ref|XP_629601.1| 60S ribosomal protein L27a [Dictyostelium discoideum]
gi|7440771|pir||JE0320 ribosomal protein Ddl27a - slime
mold (Dictyostelium discoideum)
gi|60462977|gb|EAL61173.1| ribosomal protein L27a
[Dictyostelium discoideum]
gi|1350711|sp|P48160|RL27A_DICDI 60S ribosomal protein
L27a gi|790954|dbj|BAA08873.1| ribosomal protein
[Dictyostelium discoideum]
Length = 148
Score = 211 bits (538), Expect = 2e-54
Identities = 98/149 (65%), Positives = 121/149 (80%), Gaps = 2/149 (1%)
Query: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1 MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60
Query: 61 FHKLRNQFFCPTVNIDKLWSLLPQEV-KDQAANDKSKAPVIDVTNYGYFKVLGKGVLPAN 119
FH LRNQ+ CPTV+++K+W+L+P+ V K AA + APV+DVT G+FKVLG G+LP
Sbjct: 61 FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 119
Query: 120 QPVVVKAKLISKIAEKKIKENGGAVLLTA 148
QP++VKA+ SK+AEKKIK GGA +L A
Sbjct: 120 QPIIVKARYFSKVAEKKIKAVGGACILVA 148
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,699,425
Number of Sequences: 2540612
Number of extensions: 13202036
Number of successful extensions: 31116
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 30370
Number of HSP's gapped (non-prelim): 317
length of query: 148
length of database: 863,360,394
effective HSP length: 124
effective length of query: 24
effective length of database: 548,324,506
effective search space: 13159788144
effective search space used: 13159788144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0172.11