BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.12
(1518 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 1041 0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 1039 0.0
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 1036 0.0
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 1022 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 1018 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 1013 0.0
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 657 0.0
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 397 e-108
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 391 e-107
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 380 e-103
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 380 e-103
gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678... 379 e-103
gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cult... 379 e-103
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 372 e-101
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 372 e-101
gb|AAK53850.1| Putative retroelement [Oryza sativa] 370 e-100
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 368 e-100
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 361 9e-98
gb|AAF79683.1| F9C16.17 [Arabidopsis thaliana] gi|25405863|pir||... 361 9e-98
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 357 2e-96
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1041 bits (2692), Expect = 0.0
Identities = 539/955 (56%), Positives = 690/955 (71%), Gaps = 34/955 (3%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 174 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSND 233
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R +RR +P+V + DI K S++ KK
Sbjct: 234 EGEEDEYDLDTDEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEY--HKKS 291
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEED---EPQVMRLT 320
++K + SKG+QCH CEGY HIKAEC T+LKK KG+ SDD E++ + V LT
Sbjct: 292 DEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALT 351
Query: 321 VKCNSGS*SSDGEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILNGS 380
+ S SSD EI+ +ELA +Y+ L + ++ +L+ V+ NLE EK+
Sbjct: 352 GRFESDEDSSDIEITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISE 411
Query: 381 LQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRKIS 440
L+ EV L SK+E M K ++MLN G+D+ D +L++G + GLG+ R
Sbjct: 412 LKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSAC---RITM 468
Query: 441 NKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRPYC 500
+F+PA+ T MS S+H G QQ + + W+CH+CGK+GHI+P+C
Sbjct: 469 TEFVPAKNSTGATMSQHRSRH---HGTQQ--------KKSKRKKWRCHYCGKYGHIKPFC 517
Query: 501 YRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHMN 560
Y L+G P H +S++ + W PK+ + +LV +TSLRAS+KEDWY DSGCSRHM
Sbjct: 518 YHLHGHPHHGT----QSSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMT 573
Query: 561 SVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQL 620
VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISISQL
Sbjct: 574 GVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQL 633
Query: 621 CDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLWH 680
CD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE K+WH
Sbjct: 634 CDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWH 693
Query: 681 QK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSLQ 740
Q+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+ L+
Sbjct: 694 QRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSMVLE 753
Query: 741 LLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGY 800
LLHMDLMGPM ES GGKRY +V VDDFSRFTWVNF+ EKS+TFEVF+ELS +LQ EK
Sbjct: 754 LLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDC 813
Query: 801 GIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHA 860
I +IRSDHG+EFEN KF+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ RVMLHA
Sbjct: 814 VIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEATRVMLHA 873
Query: 861 KKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDRE 920
K++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KPTVK+F++F S CYIL DRE
Sbjct: 874 KELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADRE 933
Query: 921 QRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMV----SSLNEINVDG 976
QRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ + E
Sbjct: 934 QRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTS 993
Query: 977 DDNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGVVT 1036
+DNV N +SD+ +E + K P IRIQKM KE IIG+ N GV T
Sbjct: 994 EDNVADTAKSAEN--AEKSDSTTDEPNINQPDKS--PFIRIQKMQPKELIIGDPNRGVTT 1049
Query: 1037 RSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
RSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 1050 RSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 1104
Score = 480 bits (1236), Expect = e-133
Identities = 228/299 (76%), Positives = 265/299 (88%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV M+SEFEMSLVGEL+Y
Sbjct: 1237 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHY 1296
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQSKYAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQ+LY
Sbjct: 1297 FLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLY 1356
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI F++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 1357 RSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS 1416
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
+S L+ YCDADWAG+ADD K TSGGCF+LG NLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 1417 DSMLVGYCDADWAGSADDRKCTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSC 1476
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QH+RTKHIDIRHH+I+DLV++K
Sbjct: 1477 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHNRTKHIDIRHHYIRDLVDDK 1535
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 1039 bits (2686), Expect = 0.0
Identities = 542/958 (56%), Positives = 691/958 (71%), Gaps = 38/958 (3%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 173 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSND 232
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ LG++FNKV+ R +RR +P+V + DI K S++ R K
Sbjct: 233 EGEEDEYDLDTDEGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLDIRKGSEYQR--KS 290
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEED---EPQVMRLT 320
++K + SKG+QC CEGY HIKAEC T+LKK KG+ SDD E++ + V LT
Sbjct: 291 DEKPSHSKGIQCRGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALT 350
Query: 321 VKCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILN 378
+ S SSD EI+ +ELA Y+ L + ++ +L+ V+ NLE EK+
Sbjct: 351 GRFESAEDSSDTDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 410
Query: 379 GSLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRK 438
L+ EV L SK+E M K ++MLN G+D+ D +L++G + GLG+ R
Sbjct: 411 SKLKGEVGFLNSKLENMTKSIKMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSA---GRT 467
Query: 439 ISNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRP 498
+F+PA+ T MS S+H G QQ + + W+CH+CGK+GHI+P
Sbjct: 468 TMTEFVPAKNSTGATMSQHRSRH---HGTQQ--------KRSKRKKWRCHYCGKYGHIKP 516
Query: 499 YCYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRH 558
+CY L+G P H S++ + W PK+ + +LV +TSLRAS+KEDWY DSGCSRH
Sbjct: 517 FCYHLHGHPHHGT----QGSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRH 572
Query: 559 MNSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISIS 618
M VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLT NLISIS
Sbjct: 573 MTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISIS 632
Query: 619 QLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKL 678
QLCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE K+
Sbjct: 633 QLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKI 692
Query: 679 WHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRS 738
WHQ+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+R
Sbjct: 693 WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRV 752
Query: 739 LQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEK 798
L+LLHMDLMGPM ES GGKRY +V VDDFSRFTWVNF+ EKS+TFEVF+ELS +LQ EK
Sbjct: 753 LELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREK 812
Query: 799 GYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVML 858
I +IRSDHG+EFEN KF+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVML
Sbjct: 813 DCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVML 872
Query: 859 HAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTD 918
HAK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KPTVK+F++F S CYIL D
Sbjct: 873 HAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILAD 932
Query: 919 REQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD- 977
REQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ + + +V+ D
Sbjct: 933 REQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKK-DVEEDV 991
Query: 978 ----DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEG 1033
DNV N SD+ +E + K PSIRIQKMH KE IIG+ N G
Sbjct: 992 RTSGDNVADTAKSAEN--AENSDSATDEPNINQPDKR--PSIRIQKMHPKELIIGDPNRG 1047
Query: 1034 VVTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
V TRSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 1048 VTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 1105
Score = 484 bits (1247), Expect = e-135
Identities = 230/299 (76%), Positives = 266/299 (88%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 1238 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 1297
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQSKYAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQSLY
Sbjct: 1298 FLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 1357
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 1358 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS 1417
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
S L+ YCDADWAG+ADD KSTSGGCF+LGNNLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 1418 GSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSC 1477
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QHSRTKHIDIRHH+I++LV++K
Sbjct: 1478 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDK 1536
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 1036 bits (2678), Expect = 0.0
Identities = 540/958 (56%), Positives = 694/958 (72%), Gaps = 38/958 (3%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 146 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSND 205
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R +RR +P+V + DI K S++ +K+
Sbjct: 206 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEY--QKRS 263
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEED---EPQVMRLT 320
++K + SKG+QCH CEGY HIKAEC T+LKK KG+ SDD E++ + V LT
Sbjct: 264 DEKPSHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALT 323
Query: 321 VKCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILN 378
+ S SSD EI+ +ELA +Y+ L + ++ +L+ V+ NLE EK+
Sbjct: 324 GRFESAEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEDEI 383
Query: 379 GSLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRK 438
L+ E+ L SK+E M K ++MLN G+D+ D +L++G + GLG+ R
Sbjct: 384 SELKGEIGFLNSKLENMTKSIKMLNKGSDLLDEVLQLGKNVGNQRGLGFNHKSA---GRT 440
Query: 439 ISNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRP 498
+F+PA+ T MS S+H G QQ + + W+CH+CGK+GHI+P
Sbjct: 441 TMTEFVPAKNSTGATMSQHRSRH---HGTQQ--------KKSKRKKWRCHYCGKYGHIKP 489
Query: 499 YCYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRH 558
+CY L+G P H +S++ + W PK+ +LV +TSLRAS+KEDWY DSGCSRH
Sbjct: 490 FCYHLHGHPHHGT----QSSSSGRKMMWVPKHKTVSLVVHTSLRASAKEDWYLDSGCSRH 545
Query: 559 MNSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISIS 618
M VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISIS
Sbjct: 546 MTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISIS 605
Query: 619 QLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKL 678
QLCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE K+
Sbjct: 606 QLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKI 665
Query: 679 WHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRS 738
WHQ+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K S++KL T+R
Sbjct: 666 WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRV 725
Query: 739 LQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEK 798
L+LLHMDLMGPM ES G KRY +V VDDFSRFTWVNF+ EKS+TFEVF+ELS +LQ EK
Sbjct: 726 LELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREK 785
Query: 799 GYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVML 858
I +IRSDHG+EFEN KF+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVML
Sbjct: 786 DCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVML 845
Query: 859 HAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTD 918
HAK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KPTVK+F++ S CYIL D
Sbjct: 846 HAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHICGSPCYILAD 905
Query: 919 REQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD- 977
REQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ + + +V+ D
Sbjct: 906 REQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKK-DVEEDV 964
Query: 978 ----DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEG 1033
DNV N SD+ +E + K PSIRIQKMH KE IIG+ N G
Sbjct: 965 RTSGDNVADTAKSAEN--AENSDSATDEPNINQPDKR--PSIRIQKMHPKELIIGDPNRG 1020
Query: 1034 VVTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
V TRSR +II+N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 1021 VTTRSREIEIISNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 1078
Score = 477 bits (1227), Expect = e-132
Identities = 227/299 (75%), Positives = 262/299 (86%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 1211 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 1270
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQSKYAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQSLY
Sbjct: 1271 FLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 1330
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ CARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 1331 RSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS 1390
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
+S L+ YCDADWAG+ DD KST GGCF+LG N ISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 1391 DSMLVGYCDADWAGSVDDRKSTFGGCFYLGTNFISWFSKKQNCVSLSTAEAEYIAAGSSC 1450
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+NLSAINISKNP+QHSRTKHIDIRHH+I+DLV++K
Sbjct: 1451 SQLVWMKQMLKEYNVEQDVMTLYCDNLSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 1509
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1022 bits (2643), Expect = 0.0
Identities = 537/957 (56%), Positives = 690/957 (71%), Gaps = 37/957 (3%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 173 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSND 232
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R ++R +P+V + DI K S + +K+
Sbjct: 233 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKY--QKRS 290
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQ--VMRLTV 321
+ K + SKG+QCH CEGY HI AEC T+LKK KG+ SD ++ +E + V LT
Sbjct: 291 DVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTG 350
Query: 322 KCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILNG 379
+ SSD EI+ +ELA +Y+ L + ++ +L+ V+ +LE EK+
Sbjct: 351 IFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEIS 410
Query: 380 SLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRKI 439
L+ EV L SK+E M K ++MLN G+D D +L +G A + GLG+ R
Sbjct: 411 ELKGEVGFLNSKLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKFA---GRTT 467
Query: 440 SNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRPY 499
+F+PA+ +T MS +S+H G QQ + + W+CH+CGK+GHI+P+
Sbjct: 468 MTEFVPAKNRTGTTMSQHLSRH---HGTQQ--------KKSKRKKWRCHYCGKYGHIKPF 516
Query: 500 CYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHM 559
CY L+G P H +S + K W PK+ +LV +TSLRAS+KEDWY DSGCSRHM
Sbjct: 517 CYHLHGHPHHGT----QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHM 572
Query: 560 NSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQ 619
VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISISQ
Sbjct: 573 TGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQ 632
Query: 620 LCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLW 679
LCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE ++W
Sbjct: 633 LCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIW 692
Query: 680 HQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSL 739
HQ+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+R L
Sbjct: 693 HQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRVL 752
Query: 740 QLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKG 799
+LLHMDLMGPM ES GGKRY +V VDDFSRFTWVNF+ EKSETFEVF+ELS +LQ EK
Sbjct: 753 ELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKD 812
Query: 800 YGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLH 859
I +IRSDHG+EFEN +F+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVMLH
Sbjct: 813 CVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 872
Query: 860 AKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDR 919
AK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KP+VK+F++F S CYIL DR
Sbjct: 873 AKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADR 932
Query: 920 EQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD-- 977
EQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ S + +V+ D
Sbjct: 933 EQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL-SPARKKDVEEDVR 991
Query: 978 ---DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGV 1034
DNV N SD+ +E + K S RIQKMH KE IIG+ N GV
Sbjct: 992 TLGDNVADAAKSGEN--AENSDSATDESNINQPDKR--SSTRIQKMHPKELIIGDPNRGV 1047
Query: 1035 VTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
TRSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 1048 TTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 1104
Score = 486 bits (1251), Expect = e-135
Identities = 230/299 (76%), Positives = 266/299 (88%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 1237 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 1296
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQS+YAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQSLY
Sbjct: 1297 FLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 1356
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 1357 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCS 1416
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
N L+ YCDADWAG+ADD KSTSGGCF+LGNNLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 1417 NPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSC 1476
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QHSRTKHIDIRHH+I+DLV++K
Sbjct: 1477 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 1535
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1018 bits (2633), Expect = 0.0
Identities = 530/957 (55%), Positives = 686/957 (71%), Gaps = 37/957 (3%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 173 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSND 232
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R ++R +P+V + DI K S + +K+
Sbjct: 233 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKY--QKRS 290
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQ----VMRL 319
+ K + SKG+QCH CEGY HI AEC T+LKK KG+ SD ++ +E + +
Sbjct: 291 DVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALIG 350
Query: 320 TVKCNSGS*SSDGEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILNG 379
+ S +D EI+ +ELA +Y+ L + ++ +L+ V+ +LE EK+
Sbjct: 351 IFETAEDSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 410
Query: 380 SLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRKI 439
L+ EV L SK+E M K ++MLN G+D D +L +G A + GLG+ R
Sbjct: 411 ELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSA---GRTT 467
Query: 440 SNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRPY 499
+F+PA+ +T MS S+H G QQ + + W+CH+CGK+GHI+P+
Sbjct: 468 MTEFVPAKNRTGATMSQHRSRH---HGMQQ--------KKSKRKKWRCHYCGKYGHIKPF 516
Query: 500 CYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHM 559
CY L+G P H +S + K W PK+ +LV +TSLRAS+KEDWY DSGCSRHM
Sbjct: 517 CYHLHGHPHHGT----QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHM 572
Query: 560 NSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQ 619
VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISISQ
Sbjct: 573 TGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQ 632
Query: 620 LCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLW 679
LCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE ++W
Sbjct: 633 LCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIW 692
Query: 680 HQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSL 739
HQ+ GHL+ MKK++ K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+R L
Sbjct: 693 HQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVL 752
Query: 740 QLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKG 799
+LLHMDLMGPM ES GGKRY +V VDDFSRFTWVNF+ EKS TFEVF++LS +LQ EK
Sbjct: 753 ELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREKD 812
Query: 800 YGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLH 859
I +IRSDHG+EFEN +F+E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVMLH
Sbjct: 813 CVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 872
Query: 860 AKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDR 919
AK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KP+VK+F++F S CYIL DR
Sbjct: 873 AKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADR 932
Query: 920 EQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD-- 977
EQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ S + +V+ D
Sbjct: 933 EQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL-SPARKKDVEEDVR 991
Query: 978 ---DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGV 1034
DNV N SD+ +E + K S RIQKMH KE IIG+ N GV
Sbjct: 992 TSGDNVADAAKSGEN--AENSDSATDESNINQPDKR--SSTRIQKMHPKELIIGDPNRGV 1047
Query: 1035 VTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
TRSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 1048 TTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 1104
Score = 481 bits (1238), Expect = e-134
Identities = 228/299 (76%), Positives = 265/299 (88%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 1237 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 1296
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQS+YAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQ Y
Sbjct: 1297 FLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPY 1356
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 1357 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS 1416
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
+S L+ YCDADWAG+ADD KSTSGGCF+LGNNLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 1417 SSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSC 1476
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QHSRTKHIDIRHH+I+DLV++K
Sbjct: 1477 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 1535
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 1013 bits (2618), Expect = 0.0
Identities = 534/957 (55%), Positives = 686/957 (70%), Gaps = 39/957 (4%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 173 RKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSND 232
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + ++DE L+ A+ +LG++FNKV+ R ++R +P+V + DI K S + +KK
Sbjct: 233 EGEEDEYDLNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKY--QKKS 290
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQ--VMRLTV 321
+ K + SKG+QCH CEGY HI AEC T+LKK KG+ SD ++ +E + V LT
Sbjct: 291 DVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALTG 350
Query: 322 KCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILNG 379
+ SSD EI+ +ELA +Y+ L + ++ +L+ V+ +LE EK+
Sbjct: 351 IFETAEDSSDTDSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEIS 410
Query: 380 SLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRKI 439
L+ EV L SK+E M K ++MLN G+D D +L +G A + GLG+ R
Sbjct: 411 ELKGEVGFLNSKLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSA---GRTT 467
Query: 440 SNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRPY 499
+F+PA+ +T MS S+H G QQ + + W+CH+CGK+GHI+P+
Sbjct: 468 MTEFVPAKNRTGATMSQHRSRH---HGMQQ--------KKSKRKKWRCHYCGKYGHIKPF 516
Query: 500 CYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHM 559
CY L+ P H +S + K W PK+ +LV +TSLRAS+KEDWY DSGCSRHM
Sbjct: 517 CYHLH--PHHGT----QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHM 570
Query: 560 NSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQ 619
VK +L NI+P STS+VTFGDG+KG+I G K+V G P+L+ VLLV+GLTANLISISQ
Sbjct: 571 TGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQ 630
Query: 620 LCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLW 679
LCD NV+ K+ C VTNE EV+M G RSKDNCY+W+PQ + SS CL S EDE ++W
Sbjct: 631 LCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIW 690
Query: 680 HQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSL 739
HQ+ GHL+ MKK+I K A+RGIP LKIEE ++CGECQIGKQ K SH+KL T+R L
Sbjct: 691 HQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVL 750
Query: 740 QLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKG 799
+LLHMDLMGPM ES GGKRY +V VDDFSRFTWV F+ EKSETFEVF+ELS +LQ EK
Sbjct: 751 ELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREKD 810
Query: 800 YGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLH 859
I +IRSDHG+EFEN + +E+C +EGI HEFSA ITPQQNG+VERKNRTLQE+ARVMLH
Sbjct: 811 CVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 870
Query: 860 AKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDR 919
AK++PY+LWAEA+NTACYIH RVT+R GT +TLYE+WKG+KP+VK+F++F S CYIL DR
Sbjct: 871 AKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADR 930
Query: 920 EQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEINVDGD-- 977
EQRRK+DPKSD G+FLGYS NS+AYRVFNSRT+T+MESINVVVDD+ S + +V+ D
Sbjct: 931 EQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDL-SPARKKDVEEDVR 989
Query: 978 ---DNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGV 1034
DNV N SD+ +E + K S RIQKMH KE IIG+ N GV
Sbjct: 990 TSGDNVADAAKSGEN--AENSDSATDESNINQPDKR--SSTRIQKMHPKELIIGDPNRGV 1045
Query: 1035 VTRSR--DIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
TRSR +I++N+CF+SKIEPKN+KEALTDE+WINAMQEEL QFKRNEVW+LVPRPE
Sbjct: 1046 TTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPE 1102
Score = 486 bits (1251), Expect = e-135
Identities = 230/299 (76%), Positives = 266/299 (88%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y K GIDKTLFVK D +MIAQIYVDDIVFGGMS+ M+ HFV+ M+SEFEMSLVGEL Y
Sbjct: 1235 YRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTY 1294
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQVKQM+DSIF+SQS+YAK +VKKFG+E ++HKRTPA TH+KL+KDE+GT VDQSLY
Sbjct: 1295 FLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLY 1354
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
RSMI SLLYLTASRPDI +++ VCARYQA PK SHL VKRI+KY+NGT+DYG Y H S
Sbjct: 1355 RSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCS 1414
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
N L+ YCDADWAG+ADD KSTSGGCF+LGNNLISWF+KKQNCVSLST EAEYIAAGS C
Sbjct: 1415 NPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSC 1474
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
+QL+WMK ML+EYNV+QDVMTLYC+N+SAINISKNP+QHSRTKHIDIRHH+I+DLV++K
Sbjct: 1475 SQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDK 1533
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 657 bits (1695), Expect = 0.0
Identities = 395/1034 (38%), Positives = 569/1034 (54%), Gaps = 116/1034 (11%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+K+LR LP +F+ K TA+ + D +I +E++G LQ +E+ + SK +A +
Sbjct: 171 KKLLRCLPSRFESKRTAMGTSLDTDTIDFEEVVGMLQAYELEITSGKGGYSKGVALAVS- 229
Query: 205 EDDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKEE 264
SEK+ + L +++SM+ + F++ ++R E+R D R ++
Sbjct: 230 -----SEKNEIQELKDSMSMMAKNFSRAMKRVEKRGFARNQGSDRD---------RDRDR 275
Query: 265 DKYNKSKGVQCHECEGYEHIKAECATYLKK-----------------LG------KGMVA 301
D+ +K +QCHEC+GY HIKAEC + +K +G + +A
Sbjct: 276 DRNSKRSEIQCHECQGYGHIKAECPSLKRKDLKCSECRGIGHTKFDCIGSKSKPDRSYIA 335
Query: 302 TWSDDDTGEEDEPQVMRLTVKC-------NSGS*SSDGEIS--------------EEELA 340
SD D+ +ED + ++ V N S SSD E+ E ++
Sbjct: 336 E-SDSDSDDEDSEEDVKGFVSFVGIIEDDNVSSDSSDSEVGCEKEEISADDESDVEMDVD 394
Query: 341 ETYKLLFNNW----KDAC---EKGMKLEGVVKNLEVE-------KQNFLILNGSLQEEVT 386
++ L+ NW K+ E+ +K++ ++ L+ E K ++ + +E+
Sbjct: 395 GEFRKLYENWLVLSKEKVIWLEEKVKVQEQIEQLKGELAVANQIKSEMILKYSAKEEKNR 454
Query: 387 VLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTED-PTTEENRKISNKFIP 445
L + K + MLN GT D IL G V K GLGY +T+ N S P
Sbjct: 455 ELSQDLSDTRKKIHMLNKGTKDLDSILAAGRVGKSNFGLGYHGGGSSTKTNFVRSKAAAP 514
Query: 446 AEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRPYCYRLYG 505
+ ++ F+ ++ + A++ YQ + + + T ++C++CG+HGHI+ YCYR
Sbjct: 515 TQSQSVFR--SKSNSVPARRKYQNQNHYHSQRTV---TGYECYYCGRHGHIQRYCYRYAA 569
Query: 506 TPQHW-RTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHMNSVKM 564
R +++ + + + + VAYTS+ K+ WYFDSG SRHM +
Sbjct: 570 RLSKLKRQGKLYPHQGRNSKMYVRREDLYCHVAYTSIAEGVKKPWYFDSGASRHMTGSQA 629
Query: 565 YLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQLCDLD 624
L+N S V FG GAKGRIKG + P+L+NV VEGLTANLIS+SQLCD
Sbjct: 630 NLNNYSSVKESNVMFGGGAKGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVSQLCDEG 689
Query: 625 LNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLWHQK*G 684
L VS NK C TNE + +TGVR+ +NCYMW +CL + +++ LWHQ+ G
Sbjct: 690 LTVSFNKVKCWATNERNQNTLTGVRTGNNCYMWEEPK-----ICLRAEKEDPVLWHQRLG 744
Query: 685 HLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSLQLLHM 744
H+N SM K+++KE +RG+P LK E VCG C GKQ + HK++ I TT+ L L+HM
Sbjct: 745 HMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQVLDLIHM 804
Query: 745 DLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVK 804
DLMGPM ES GKRYVFV VDDFSR+ WV F+ EKSET F+ L+ QL+ EK GI +
Sbjct: 805 DLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNEKKMGIKQ 864
Query: 805 IRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVP 864
IRSD G EF N F+ +C ++GI H++SAP TPQ NGVVERKNRTLQE AR M+H VP
Sbjct: 865 IRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQSNGVVERKNRTLQEMARAMIHGNGVP 924
Query: 865 YHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRK 924
WAEAI+TACY+ RV +R G+D T YE+WKGKKP + YF VF CYI+ D++Q K
Sbjct: 925 EKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKKPNLSYFRVFGCVCYIMNDKDQLGK 984
Query: 925 LDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMVSSLNEIN-VDGDDNVPQI 983
D +S+EG FLGY+ NS AYRV+N + + ES+NVV DD S+ E+ + + N PQ
Sbjct: 985 FDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNVVFDD--GSMPELQIIVRNRNEPQ- 1041
Query: 984 VDERPNDCDIRSDTEPEE---EKEQESSKEIVPSIRIQKMHLKENIIGNLNEGVVTRS-- 1038
N + R+D + + K E S E VP ++ + H ++IIG+ + VTR
Sbjct: 1042 TSISNNHGEERNDNQFDNGDINKSGEESDEEVPPAQVHRDHASKDIIGDPSGERVTRGVK 1101
Query: 1039 ---------------------RDIIANACFISKIEPKNIKEALTDEYWINAMQEELSQFK 1077
+ I +CF+S +EPKN+KEAL D +WI AM+EEL +F
Sbjct: 1102 QDYRQLAGIKQKHRVMASFACFEEIMFSCFVSIVEPKNVKEALEDHFWILAMEEELEEFS 1161
Query: 1078 RNEVWDLVPRPEVV 1091
R++VWDLVPRP V
Sbjct: 1162 RHQVWDLVPRPPQV 1175
Score = 365 bits (937), Expect = 6e-99
Identities = 180/300 (60%), Positives = 227/300 (75%), Gaps = 1/300 (0%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y + +DKTLFVK+D ++I QIYVDDIVFGG SD +V+ FV+ M +EF MS+VGEL Y
Sbjct: 1306 YTRGSVDKTLFVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKY 1365
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
F GLQ+ Q + I ISQS YA+ LVK+FG+ S TP +T KL KDE G VD+ LY
Sbjct: 1366 FLGLQINQTDEGITISQSTYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLY 1425
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
R MI SLLYLTA+RPD+ S+ +CARYQ+ PK SHL+ VKRIIKY++GT +YG Y ++
Sbjct: 1426 RGMIGSLLYLTATRPDLCLSVGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDT 1485
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
+ L+ YCDADW GN DD +ST+GG FFLG+NLISW +KKQNCVSLS+T++EYIA GS C
Sbjct: 1486 SLVLVGYCDADWGGNLDDRRSTTGGVFFLGSNLISWHSKKQNCVSLSSTQSEYIALGSCC 1545
Query: 1460 TQLLWMKHMLREYNVK-QDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
TQLLWM+ M +Y + D + + C+N SAI ISKNP+QHS TKHI IRHHF+++LVEEK
Sbjct: 1546 TQLLWMRQMGLDYGMTFPDPLLVKCDNESAIAISKNPVQHSVTKHIAIRHHFVRELVEEK 1605
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 397 bits (1021), Expect = e-108
Identities = 238/594 (40%), Positives = 322/594 (54%), Gaps = 49/594 (8%)
Query: 543 ASSKEDWYFDSGCSRHMNSVK-MYLDNIK-PHSTSFVTFGDGAKGRIKGSEKIVSGGSPN 600
AS W DSGC+ HM K M+ +K S + FGDG +G++KG KI +
Sbjct: 5 ASGGSSWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHS 64
Query: 601 LSNVLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTNENE-EVVMTGVRSKDNCYMWSP 659
+SNV LVE L NL+S+SQLC++ N +V + + GV +
Sbjct: 65 ISNVFLVESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFA 124
Query: 660 QNKAMSSMCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQI 719
+ +A CL++ LWH++ H+ ++ K++ E + G+ ++ E+D+ C CQ
Sbjct: 125 KEEAGLDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQA 184
Query: 720 GKQTKTSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAE 779
GKQ SH + T+R L++LHMDL GP+ S GG +Y V VDDFSRFTWV FL E
Sbjct: 185 GKQVGGSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQE 244
Query: 780 KSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQ 839
KSET + ++ Q E + KIRSD+G EF+N + E+ EGIKHEFSAP TPQQ
Sbjct: 245 KSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQ 304
Query: 840 NGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGK 899
NGVVERKNRTL + AR ML K P W EA+NTAC+ RV + +T YEL G
Sbjct: 305 NGVVERKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYELLTGN 364
Query: 900 KPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESIN 959
KP V YF VF S+CYIL + + K PK+ EG LGY N+KAYRVFN + + S +
Sbjct: 365 KPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSGD 424
Query: 960 VVVDDMVSSLNEINVDGDD----NVP-------QIVDERPNDCDIRSDTEPE-------E 1001
VV D+ S E VD DD ++P I + RP + D R P +
Sbjct: 425 VVFDETNGSPREQVVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVHPPTQ 484
Query: 1002 EKEQESSKEIVPS----------------------IRIQKMHLKENIIGNLNEGVVTRSR 1039
+ EQ +E+ IQ+ H + I+G++++GV TRSR
Sbjct: 485 DDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSR 544
Query: 1040 DIIANAC----FISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRPE 1089
+ N C F+S IEP ++EAL D W+ AMQEEL+ FKRNEVW LVPRP+
Sbjct: 545 --LVNFCEHNSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPK 596
Score = 310 bits (793), Expect = 3e-82
Identities = 150/288 (52%), Positives = 201/288 (69%)
Query: 1226 DKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQV 1285
D TLF K+ G + + QIYVDDI+FG + E F R M +FEMS++GELNYF G QV
Sbjct: 734 DPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQV 793
Query: 1286 KQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICS 1345
KQ++D FISQ+KY + L+K+FG++ + +TP T ++ G VDQ YRSMI S
Sbjct: 794 KQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGS 853
Query: 1346 LLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLIS 1405
LLYL ASRPDI S+ +CAR+Q+ PKE HL+ VKRI++Y+ T +G +Y S +L+
Sbjct: 854 LLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVG 913
Query: 1406 YCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLWM 1465
Y D+D+AG D KSTSG C FLG +L+SW +KKQ V+LST EAEY+AAG C QLLWM
Sbjct: 914 YSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWM 973
Query: 1466 KHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKD 1513
+ LR++ + L C+N SAI +++NP++HSRTKHIDIRHHF++D
Sbjct: 974 RQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLRD 1021
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 391 bits (1005), Expect = e-107
Identities = 228/583 (39%), Positives = 313/583 (53%), Gaps = 47/583 (8%)
Query: 549 WYFDSGCSRHMNSVKMYLDNIKPHSTSF--VTFGDGAKGRIKGSEKIVSGGSPNLSNVLL 606
W DSGC+ HM + ++ P+ TS + FGD KG++ G KI +++NVLL
Sbjct: 688 WVIDSGCTNHMTREESMFSSLDPNGTSQDNIVFGDDGKGKVMGLGKIAISNDLSIANVLL 747
Query: 607 VEGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSS 666
V+ L NL+S+SQLC + N + +V GV + +KA
Sbjct: 748 VKSLNYNLLSVSQLCSMGYNCLFTNVDAVYRRNDFSIVFKGVLKGKLYLVDFSSSKAKHE 807
Query: 667 MCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTS 726
LV + LWH++ H+ ++ K++ + I G+ ++ E+D+VC CQ GKQ
Sbjct: 808 TYLVPKSNTGWLWHRRLAHVGMRNLHKLLKHDHILGLTNVQFEKDRVCSACQAGKQIGAH 867
Query: 727 HKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEV 786
H + TTR+L+LLHMDL GP+ S GG +Y V VDDFSRFTWV FL +KSET +
Sbjct: 868 HPVKNVMTTTRALELLHMDLFGPIAYLSIGGNKYGLVIVDDFSRFTWVFFLHDKSETQAI 927
Query: 787 FRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERK 846
F++ +++ Q E I IRSD+GKEF+N + EGIKHEFSAP +PQQNGV ERK
Sbjct: 928 FKKFARRAQNEFDLKIKNIRSDNGKEFKNTCIESFLDEEGIKHEFSAPYSPQQNGVAERK 987
Query: 847 NRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYF 906
NRTL E A+ ML K WAEA+NTAC+ R+ + T YEL G KP V YF
Sbjct: 988 NRTLIEMAKTMLDEYKTSDRFWAEAVNTACHAINRLYLHRLLKKTPYELLTGNKPNVSYF 1047
Query: 907 YVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDMV 966
VF S+CYIL + + K PK DEG LGY N AYRVFN +T +++E V D
Sbjct: 1048 RVFGSKCYILNKKARSSKFSPKVDEGFLLGYGSNECAYRVFN-KTSSIVEIARDVTFDET 1106
Query: 967 SSLNEINVD----GDDNVP----------QIVDERPNDCDIRSDTEPEEE---------- 1002
+ VD G++ P ++ P + S T+ E
Sbjct: 1107 NGFQVEQVDSHVLGEEEDPSEAIKRLALGDVLPREPQQ-GVSSSTQVEPPTSTQADDPSI 1165
Query: 1003 ---KEQESSKEIVPS----------IRIQKMHLKENIIGNLNEGVVTRSRDIIANAC--- 1046
+ E +++ PS IQ+ H +NI+G++N+GV TRSR IAN C
Sbjct: 1166 SILDQDEEGEQVPPSPINLARPRIHQSIQRDHPTDNILGDINKGVSTRSR--IANFCEHY 1223
Query: 1047 -FISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
F+S +EP ++EA+ D W+ AMQEEL+ F RNEVW LV RP
Sbjct: 1224 SFVSSLEPLRVEEAINDPDWVMAMQEELNNFTRNEVWTLVERP 1266
Score = 185 bits (470), Expect = 9e-45
Identities = 91/185 (49%), Positives = 125/185 (67%)
Query: 1228 TLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQVKQ 1287
TLF K + + QIYVDDI+FG + E F R M FEMS++GEL +F GLQ+KQ
Sbjct: 1359 TLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKHFEMSMMGELKFFLGLQIKQ 1418
Query: 1288 MQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMICSLL 1347
+++ FI Q+KY K ++KKFG+E + TP ++ L ++ G DVDQ +YRS+I SLL
Sbjct: 1419 LKEGTFICQTKYLKDMLKKFGMENAKPTHTPMPSNGHLDLNQQGKDVDQKVYRSIIGSLL 1478
Query: 1348 YLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLISYC 1407
YL ASRPDI S+ +CAR+QAAPKE HL+ VKRI++Y+ T + G +Y + +LI Y
Sbjct: 1479 YLCASRPDIMLSVCMCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYPKGAKFDLIGYA 1538
Query: 1408 DADWA 1412
DAD+A
Sbjct: 1539 DADYA 1543
Score = 37.0 bits (84), Expect = 5.2
Identities = 35/161 (21%), Positives = 60/161 (36%), Gaps = 36/161 (22%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSD------------ 192
+K++R++ + VT I E D ++ +L+G + +M V E D
Sbjct: 183 KKMVRAITPRNSTLVTIIRERPDYKTLTPHDLLGRILAHDMLVQESKDVIQYINQSSTTN 242
Query: 193 -KKSKSIAFVSNTEDDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDI 251
KK E+++ K E E +++ +KF K +RR
Sbjct: 243 IKKEDLALKAKEEEEENRKSKSKAEIDDEEMALFVKKFGKFMRR---------------- 286
Query: 252 GKHSDFARRKKEEDKYNKSKG----VQCHECEGYEHIKAEC 288
S F + + NKS G C+ C+ H A+C
Sbjct: 287 ---SGFFKGGSSKHYSNKSSGRHSARMCYVCKEPGHFIADC 324
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 380 bits (977), Expect = e-103
Identities = 296/1013 (29%), Positives = 471/1013 (46%), Gaps = 141/1013 (13%)
Query: 144 SQKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEM-----SVNERSDKKSKSI 198
++K+LR+LP+K++ VT + + D+ + L+G + T +M E + K I
Sbjct: 155 AKKMLRALPEKYETLVTMLINS-DMSRMTPASLLGKINTNDMYKLKKKEMEEASPSKKCI 213
Query: 199 AFVSNTEDDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFA 258
A + ED D ++NL E I++L R+FN + R R + GK S+
Sbjct: 214 ALQAEVEDK-GKVNDVNKNLEEEIALLARRFNDFLGR------------RKERGKGSNSN 260
Query: 259 RRKKEEDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQVMR 318
RR+ + S ++C EC H ++C S DD
Sbjct: 261 RRRNKRPNKTLS-NLRCFECGEKGHFASKCP--------------SKDD----------- 294
Query: 319 LTVKCNSGS*SSDGEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILN 378
DG+ S ++ + YKL+ K ++G K+E + + +++ +
Sbjct: 295 ------------DGDKSSKKKSGGYKLM----KKLKKEGKKIEAFIGEWDSNEES-SASS 337
Query: 379 GSLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTE------DPT 432
GS +E+ SK + M V + +F + + + +T L +E D +
Sbjct: 338 GSKEEDGDDASSKKKKMA--VVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDIS 395
Query: 433 TEENRKISNKFIPAEKKTEFKMSNRMSQHVAQQG-YQQIPYSYPPTQIMRSTTWKCHHCG 491
+E + + +K K H + + Y+++ S+ I + H
Sbjct: 396 YDELVSMFEELHAYSEKEIVKFKALKKDHASLEVLYEELKTSHERLTISHEKLKEAHD-- 453
Query: 492 KHGHIRPYCYRLYGTPQHWRTTQMHTSTN--------PKIREWKPKNIVTALVAYTSLRA 543
L T QH + S + + + +++ ++ +S
Sbjct: 454 ----------NLLSTTQHGALIDVGISCDLLDDTLALALVYLFVMPHLLLRTMSLSSKWL 503
Query: 544 SSKEDWYFDSGCSRHMNSVKMYLDN-IKPHSTS----FVTFG------------DGAKGR 586
SS W S + H LD+ H T F TF D +K +
Sbjct: 504 SSTRAWRGASRVNYHTGGSHWVLDSGCTQHMTGDRAMFTTFEVGGNEQEKVTFVDNSKRK 563
Query: 587 IKGSEKIVSGGSPNLSNVLLVEGLTANLISISQLCDLDLNVSSNKAGCTVTN-ENEEVVM 645
+ G KI ++ NV V+ L NL+S++Q+CDL L+ + V++ ++ V
Sbjct: 564 VIGLGKIAISNDLSIDNVSFVKSLNFNLLSVAQICDLGLSCAFFPQEVIVSSLLDKSCVF 623
Query: 646 TGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPR 705
G R + ++ ++A CLV+ LWH++ H+ + K+ ++ + G+
Sbjct: 624 KGFRYGNLYFVDFNSSEANLKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKD 683
Query: 706 LKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCV 765
+K E+DK+C CQ GKQ SH + + T+R L+LLHMDL GP +S GG + V V
Sbjct: 684 VKFEKDKLCSACQAGKQVACSHPTKSIMSTSRPLELLHMDLFGPTTYKSIGGNSHCLVIV 743
Query: 766 DDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNE 825
DD+SR+TWV FL +KS E+F++++++ Q E +VKIRSD+G EF+N +YC +
Sbjct: 744 DDYSRYTWVFFLHDKSIVAELFKKIAKRAQNEFSCTLVKIRSDNGSEFKNTNIEDYCDDL 803
Query: 826 GIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIR 885
GIKHE SA +PQQNGVVERKNRTL E AR ML V WAEAINTAC+ R +
Sbjct: 804 GIKHELSATYSPQQNGVVERKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRFYLH 863
Query: 886 SGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYR 945
+T YEL G+KP V YF VF +CYI + K + + DEG LGY+ NSKAYR
Sbjct: 864 RLLKNTSYELIVGRKPNVAYFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYR 923
Query: 946 VFNSRTKTMMESINVVVDDMVSS------LNEINVDG------------------DDNVP 981
V+N T+ E+ +V D+ S L+++ +G +D
Sbjct: 924 VYNKNKGTVEETADVQFDETNGSQEGHENLDDVGDEGLIRAMKNMSFGDVKPIEVEDKPS 983
Query: 982 QIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIR--IQKMHLKENIIGNLNEGVVTRSR 1039
+ P+ S + E E+E+ I P I + K H + ++G++++GV T SR
Sbjct: 984 TSTQDEPSTFATPSQAQVEVEEEKAQDPPIPPRIHTTLSKDHPIDQVLGDISKGVQTLSR 1043
Query: 1040 DIIANAC----FISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
+A+ C F+S +EPK++ EAL D W+NAM EEL+ F RN+VW LV RP
Sbjct: 1044 --VASICEHYSFVSCLEPKHVDEALCDPDWMNAMHEELNNFARNKVWTLVERP 1094
Score = 317 bits (813), Expect = 2e-84
Identities = 157/291 (53%), Positives = 204/291 (69%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+D TLF K G + QIYVDDI+FG ++ + F M EFEMS++GEL++F GLQ
Sbjct: 1204 VDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQ 1263
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ++D F+SQ+KY K L+K+FGLE + +TP AT+ L DE G VD LYRSMI
Sbjct: 1264 IKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIG 1323
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLTASRPDI FS+ +CA +QAAPKE HL+ VKRI++Y+ ++ G +Y + L+
Sbjct: 1324 SLLYLTASRPDIMFSVCMCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLV 1383
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
Y D+D+AG D STSG C LG +L+SW +KKQN V+LST EAEY++AGS C QLLW
Sbjct: 1384 GYSDSDYAGCKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLW 1443
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLV 1515
MK L +Y + L C+N SAI I+ NP+QHSRTKHIDIRHHF++D V
Sbjct: 1444 MKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHV 1494
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 380 bits (975), Expect = e-103
Identities = 236/681 (34%), Positives = 346/681 (50%), Gaps = 71/681 (10%)
Query: 477 TQIMRSTTWKCHHCGKHGHIRPYCYRLYGTPQHWRTTQMHTSTNPKI------------- 523
T+ + T ++C +CGK GH+ +C+R + R + P+
Sbjct: 725 TKPVEKTKYECTYCGKAGHLVGFCFRKARKERQERLRTRRATRVPERFECAYHCRSSGVS 784
Query: 524 ----REWKPKNIVTAL-------VAYTSLR-----ASSKED----------WYFDSGCSR 557
R+ P+ + L +AY S +S+ D W DSGCSR
Sbjct: 785 RFPRRDVHPRRDLAGLGQNRHGHLAYNSAHNTKDACTSRTDSDFGVGRSNSWLVDSGCSR 844
Query: 558 HMNS-VKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLVEGLTANLIS 616
HM K + + S +TFGD + GR+ I L +V LV L NL+S
Sbjct: 845 HMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLS 904
Query: 617 ISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSMCLVSMED-E 675
+SQLCD +L V K V + +E V R + + S CL++ E+ +
Sbjct: 905 VSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSRCLIASENRD 964
Query: 676 AKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGT 735
WH++ GH+ + ++ + IRG+P+LK+ +D VC C+ GK T +SHK +T + T
Sbjct: 965 LFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMT 1024
Query: 736 TRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQ 795
QLLHMD +GP +S GGK YV V VDDFSR++WV FL K ETF F+ L++ L
Sbjct: 1025 DGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLA 1084
Query: 796 GEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERKNRTLQESAR 855
E + IRSD+G EF+N F +C + G++H+FS+P PQQNGVVERKNRTL E AR
Sbjct: 1085 LEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMAR 1144
Query: 856 VMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYFYVFESRCYI 915
ML P W EAI+ AC+I RV +R+ T YEL G++P V + VF +C++
Sbjct: 1145 TMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFV 1204
Query: 916 LTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDM-------VSS 968
L K + +S +G+FLGY+ +S+AYRV+ T ++E+ V D+ +S
Sbjct: 1205 LKS-GNLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASPGARPEISG 1263
Query: 969 LNEINV--------DGDDNVPQIVDERP--NDCDIRSDTEPE-----------EEKEQES 1007
+ + ++ D DD++P +D P + S T P EE + +
Sbjct: 1264 VPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSAAEEIDGGT 1323
Query: 1008 SKEIVPSIRIQKMHLKENIIGNLNEGVVTRSRDIIANACFISKIEPKNIKEALTDEYWIN 1067
S P IQ H +++IG L E V + N+ F++ EPKN+ AL+DE W+N
Sbjct: 1324 SGPTAPR-HIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHALSDENWVN 1382
Query: 1068 AMQEELSQFKRNEVWDLVPRP 1088
AM EEL F+RN+VW LV P
Sbjct: 1383 AMHEELENFERNKVWSLVEPP 1403
Score = 310 bits (793), Expect = 3e-82
Identities = 155/293 (52%), Positives = 209/293 (70%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+DKTLF G ++ QIYVDDI+FGG S +V F M EFEMS++GEL +F GLQ
Sbjct: 1542 VDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQ 1601
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ ++ IF+ Q+KY+K L+KKF + TP AT L DE G +VDQ YRSMI
Sbjct: 1602 IKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIG 1661
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLTASRPDI FS+ +CAR+QA+P+ SH VKR+ +YI T +YG +Y+ +S ++
Sbjct: 1662 SLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVR 1721
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
++ DAD+AG D KSTSG C FLG +L+SW ++KQ+ V+ ST EAEY+AA S C+Q+LW
Sbjct: 1722 AFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLW 1781
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEE 1517
M L++Y + + L C+N SAINI+KNP+QHSRTKHI+IR+HF++D VE+
Sbjct: 1782 MISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEK 1834
Score = 38.9 bits (89), Expect = 1.4
Identities = 38/167 (22%), Positives = 66/167 (38%), Gaps = 10/167 (5%)
Query: 155 FDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNTEDDDASEKDS 214
++MKVT+I E+ + + +D+L L+T EM V R K S+A V+ D S +
Sbjct: 166 WEMKVTSITESAPLSDLTMDKLYSKLKTHEMDVFHRKGLK-HSMALVA---DPSGSTSSN 221
Query: 215 DENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKEEDKYNKSKGVQ 274
D L + + E+ P D K S + ++ + ++
Sbjct: 222 DSAFVYGGFSLAALHSVTEEQLEKIPE---DDLALFARKFSRAYKNVRDRKRGKTNEPFV 278
Query: 275 CHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQVMRLTV 321
C EC H + C KK K T + G + + +M+ +
Sbjct: 279 CFECGEPNHKRVNCPKLKKKSDK---TTKKPEGQGRKGKKDLMKKAI 322
>gb|AAC18777.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
gag-proteinase polyprotein - soybean retrovirus-like
element
Length = 640
Score = 379 bits (974), Expect = e-103
Identities = 210/459 (45%), Positives = 299/459 (64%), Gaps = 26/459 (5%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNT 204
+KILRSLPK+FDMKVTAIEEAQDI +++VDELIGSLQTFE+ +++R++KKSK++AFVSN
Sbjct: 173 RKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQTFELGLSDRTEKKSKNLAFVSND 232
Query: 205 E-DDDASEKDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKE 263
E ++D + D+DE L+ A+ +LG++FNKV+ R +RR +P+V + DI K S++ +K+
Sbjct: 233 EGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEY--QKRS 290
Query: 264 EDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEED---EPQVMRLT 320
++K + SKG QCH CEGY HIKAEC T+LKK KG+ SDD E++ + V LT
Sbjct: 291 DEKPSHSKGFQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALT 350
Query: 321 VKCNSGS*SSD--GEISEEELAETYKLLFNNWKDACEKGMKLEGVVKNLEVEKQNFLILN 378
+ S SSD EI+ +ELA +Y+ L + ++ +L+ V+ NLE EK+
Sbjct: 351 GRFESAEDSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEI 410
Query: 379 GSLQEEVTVLKSKIEGMIKYVRMLNNGTDVFDLILEIG*VAKDMTGLGYTEDPTTEENRK 438
L+ EV L SK+E M K ++MLN G+D+ D +L++G + GLG+ R
Sbjct: 411 SELKGEVGFLNSKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSA---GRI 467
Query: 439 ISNKFIPAEKKTEFKMSNRMSQHVAQQGYQQIPYSYPPTQIMRSTTWKCHHCGKHGHIRP 498
+F+PA+ T MS S+H G QQ + + W+CH+CGK+GHI+P
Sbjct: 468 TMTEFVPAKISTGATMSQHRSRH---HGTQQ--------KKSKRKKWRCHYCGKYGHIKP 516
Query: 499 YCYRLYGTPQHWRTTQMHTSTNPKIREWKPKNIVTALVAYTSLRASSKEDWYFDSGCSRH 558
+CY L+G P H +S++ + W PK+ + +LV +TSLRAS+KEDWY DSGCSRH
Sbjct: 517 FCYHLHGHPHHGT----QSSSSRRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRH 572
Query: 559 MNSVKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGG 597
M VK +L NI+P STS+VTFGDG+KG+I G K+V G
Sbjct: 573 MTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDG 611
>gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531000|ref|NP_919802.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16519476|gb|AAL25185.1| Putative polyprotein [Oryza
sativa]
Length = 1407
Score = 379 bits (973), Expect = e-103
Identities = 231/601 (38%), Positives = 315/601 (51%), Gaps = 44/601 (7%)
Query: 526 WKPKNIVTALVAYTSLRASSKEDWYFDSGCSRHMNSVKMYLDNIKPHST--SFVTFGDGA 583
W PK +VT + S W DSGC+ HM + ++ P+ + + FGD
Sbjct: 677 WVPKALVTNMRGPKQEYLSGGRSWVIDSGCTNHMTGEESMFCSLDPNGSLQENIVFGDDG 736
Query: 584 KGRIKGSEKIVSGGSPNLSNVLLVEGLTANLISISQLCDLDLNVSSNKAGCTV-TNENEE 642
KG++ G KI ++SNVLLV+ L NL+S+SQLC + N TV ++
Sbjct: 737 KGKVMGLGKIAIYNDLSISNVLLVKSLNYNLLSVSQLCSMGYNCLFTDVDVTVFRRDDSS 796
Query: 643 VVMTGVRSKDNCYMWSPQNKAMSSMCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRG 702
+V GV + KA CLV+ D LWH++ H+ ++ K++ + I G
Sbjct: 797 IVFKGVLKGKLYLVDFSSTKAKHETCLVAKSDMGWLWHRRLAHVGMRNLHKLLKHDHILG 856
Query: 703 IPRLKIEEDKVCGECQIGKQTKTSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVF 762
+ + E+D VC CQ KQ H + TTR L+ LHMDL GP+ S GG +Y
Sbjct: 857 LTNVLFEKDMVCSACQARKQIGAHHPVKNVMTTTRPLEFLHMDLFGPIAYLSIGGNKYGL 916
Query: 763 VCVDDFSRFTWVNFLAEKSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYC 822
V VDDFSRFTWV FL +KSET +F++ +++ Q E I IRSD+GKEF+N +
Sbjct: 917 VIVDDFSRFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNGKEFKNMCIESFL 976
Query: 823 GNEGIKHEFSAPITPQQNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRV 882
EGIKHEFSA +PQQNGV ERKNRTL E AR ML K H WAEA+NTAC+ R+
Sbjct: 977 DEEGIKHEFSAAYSPQQNGVAERKNRTLIEMARTMLDEYKTSDHFWAEAVNTACHAINRL 1036
Query: 883 TIRSGTDSTLYELWKGKKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSK 942
+ T YEL G KP V F VF S+CYIL + + K PK DEG LGY N
Sbjct: 1037 YLHRLLKKTPYELLTGNKPNVSCFRVFGSKCYILNKKARSSKFAPKVDEGFLLGYGSNEC 1096
Query: 943 AYRVFNSRTKTMMESINVVVDDMVSSLNE---INVDGDDNVPQIVDERPNDCDIR----- 994
AYRVFN + + + +V D+ S E +V G++ P +R D+R
Sbjct: 1097 AYRVFNKTSGIVEIARDVTFDETNGSQVEQVDSHVLGEEEDPSEAIKRLALGDVRPREPQ 1156
Query: 995 ----SDTEPEEE-------------KEQESSKEIVPSI----------RIQKMHLKENII 1027
S T+ E + E +++ PS IQ+ H +NI+
Sbjct: 1157 QGASSSTQVEPSTSTQVDNPSTSSLNQGEEGEQVPPSPINLAHPRIHQSIQRDHPTDNIL 1216
Query: 1028 GNLNEGVVTRSRDIIANAC----FISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWD 1083
G++N+GV TRSR I N C F+S IEP ++EAL D W+ AMQEEL+ F RNE++
Sbjct: 1217 GDINKGVSTRSR--ITNFCEHYSFVSSIEPLKVEEALNDPDWVMAMQEELNNFTRNELYQ 1274
Query: 1084 L 1084
+
Sbjct: 1275 M 1275
Score = 69.3 bits (168), Expect = 9e-10
Identities = 31/65 (47%), Positives = 42/65 (63%)
Query: 1226 DKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQV 1285
D TLF K + + QIYVDDI+FG + E F R M FEMS++GEL +F GLQ+
Sbjct: 1343 DSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQI 1402
Query: 1286 KQMQD 1290
KQ+++
Sbjct: 1403 KQLKE 1407
Score = 42.7 bits (99), Expect = 0.094
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 145 QKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDK----------- 193
+K++R++ + VT I E D ++ +L+G + +M V E +
Sbjct: 183 KKMVRAITPRNSTLVTIIHERPDYKTLTPHDLLGRILAHDMLVQESKEVIQYINQSSTTS 242
Query: 194 -KSKSIAFVSNTEDDDASEKDSDENLS-EAISMLGRKFNKVVRR---FERRPRPNVPDKR 248
K + +A + E+++ + S E + E +++ +KF K +RR F+ + +K
Sbjct: 243 IKKEDLALKAKEEEEENHKSKSKEEIDDEEMALFVKKFGKFMRRSGFFKGNSSKHHSNKS 302
Query: 249 SDIGKHSDFARRKKEEDKYNKSKGVQCHECEGYEHIKAECATYLKKLGKGMVATWSDDDT 308
S G+HS +EDK K E Y+H K E + + GM+ SD +
Sbjct: 303 S--GRHSARDGSHIKEDKKKDEKK------EKYKHSKRE---HYGQAHLGMI-FGSDSKS 350
Query: 309 GEEDEPQVMRLTVK 322
DE V VK
Sbjct: 351 SSSDEEGVATFAVK 364
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 372 bits (955), Expect = e-101
Identities = 216/570 (37%), Positives = 309/570 (53%), Gaps = 32/570 (5%)
Query: 549 WYFDSGCSRHMNS-VKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLV 607
W DSGCSRHM K + + S +TFGD + GR+ I L +V LV
Sbjct: 754 WLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALV 813
Query: 608 EGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSM 667
L NL+S+SQLCD +L V K V + +E V R + + S
Sbjct: 814 SKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSR 873
Query: 668 CLVSMED-EAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTS 726
CL++ E+ + WH++ GH+ + ++ + IRG+P+LK+ +D VC C+ GK T +S
Sbjct: 874 CLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSS 933
Query: 727 HKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEV 786
HK +T + T QLLHMD +GP +S GGK YV V VDDFSR++WV FL K ETF
Sbjct: 934 HKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGF 993
Query: 787 FRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERK 846
F+ L++ L E + IRSD+G EF+N F +C + G++H+FS+P PQQNGVVERK
Sbjct: 994 FQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 1053
Query: 847 NRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYF 906
NRTL E AR ML P W EAI+ AC+I RV +R+ T YEL G++P V +
Sbjct: 1054 NRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHL 1113
Query: 907 YVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDM- 965
VF +C++L K + +S +G+FLGY+ +S+AYRV+ T ++E+ V D+
Sbjct: 1114 RVFGCKCFVLKS-GNLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEAS 1172
Query: 966 ------VSSLNEINV--------DGDDNVPQIVDERP--NDCDIRSDTEPE--------- 1000
+S + + ++ D DD++P +D P + S T P
Sbjct: 1173 PGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSS 1232
Query: 1001 --EEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGVVTRSRDIIANACFISKIEPKNIKE 1058
EE + +S P IQ H +++IG L E V + N+ F++ EPKN+
Sbjct: 1233 AAEEIDGGTSGPTAPR-HIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCH 1291
Query: 1059 ALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
AL+DE W+NAM EEL F+RN+VW LV P
Sbjct: 1292 ALSDENWVNAMHEELENFERNKVWSLVEPP 1321
Score = 310 bits (793), Expect = 3e-82
Identities = 155/293 (52%), Positives = 209/293 (70%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+DKTLF G ++ QIYVDDI+FGG S +V F M EFEMS++GEL +F GLQ
Sbjct: 1460 VDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQ 1519
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ ++ IF+ Q+KY+K L+KKF + TP AT L DE G +VDQ YRSMI
Sbjct: 1520 IKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIG 1579
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLTASRPDI FS+ +CAR+QA+P+ SH VKR+ +YI T +YG +Y+ +S ++
Sbjct: 1580 SLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVR 1639
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
++ DAD+AG D KSTSG C FLG +L+SW ++KQ+ V+ ST EAEY+AA S C+Q+LW
Sbjct: 1640 AFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLW 1699
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEE 1517
M L++Y + + L C+N SAINI+KNP+QHSRTKHI+IR+HF++D VE+
Sbjct: 1700 MISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEK 1752
Score = 38.9 bits (89), Expect = 1.4
Identities = 38/167 (22%), Positives = 66/167 (38%), Gaps = 10/167 (5%)
Query: 155 FDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNTEDDDASEKDS 214
++MKVT+I E+ + + +D+L L+T EM V R K S+A V+ D S +
Sbjct: 166 WEMKVTSITESAPLSDLTMDKLYSKLKTHEMDVFHRKGLK-HSMALVA---DPSGSTSSN 221
Query: 215 DENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKEEDKYNKSKGVQ 274
D L + + E+ P D K S + ++ + ++
Sbjct: 222 DSAFVYGGFSLAALHSVTEEQLEKIPE---DDLALFARKFSRAYKNVRDRKRGKTNEPFV 278
Query: 275 CHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQVMRLTV 321
C EC H + C KK K T + G + + +M+ +
Sbjct: 279 CFECGEPNHKRVNCPKLKKKSDK---TTKKPEGQGRKGKKDLMKKAI 322
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 372 bits (954), Expect = e-101
Identities = 215/570 (37%), Positives = 309/570 (53%), Gaps = 32/570 (5%)
Query: 549 WYFDSGCSRHMNS-VKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLV 607
W DSGCSRHM K + + +TFGD + GR+ I L +V LV
Sbjct: 754 WLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALV 813
Query: 608 EGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSM 667
L NL+S+SQLCD +L V K V + +E V R + + S
Sbjct: 814 SKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSR 873
Query: 668 CLVSMED-EAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTS 726
CL++ E+ + WH++ GH+ + ++ + IRG+P+LK+++D VC C+ GK T +S
Sbjct: 874 CLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGKMTSSS 933
Query: 727 HKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEV 786
HK +T + T QLLHMD +GP +S GGK YV V VDDFSR++WV FL K ETF
Sbjct: 934 HKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGF 993
Query: 787 FRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERK 846
F+ L++ L E + IRSD+G EF+N F +C + G++H+FS+P PQQNGVVERK
Sbjct: 994 FQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 1053
Query: 847 NRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYF 906
NRTL E AR ML P W EAI+ AC+I RV +R+ T YEL G++P V +
Sbjct: 1054 NRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHL 1113
Query: 907 YVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDM- 965
VF +C++L K + +S +G+FLGY+ +S+AYRV+ T ++E+ V D+
Sbjct: 1114 RVFGCKCFVLKS-GNLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEAS 1172
Query: 966 ------VSSLNEINV--------DGDDNVPQIVDERP--NDCDIRSDTEPE--------- 1000
+S + + ++ D DD++P +D P + S T P
Sbjct: 1173 PGARPEISGVPDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSS 1232
Query: 1001 --EEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGVVTRSRDIIANACFISKIEPKNIKE 1058
EE + +S P IQ H +++IG L E V + N+ F++ EPKN+
Sbjct: 1233 AAEEIDGGTSGPTAPR-HIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCH 1291
Query: 1059 ALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
AL+DE W+NAM EEL F+RN+VW LV P
Sbjct: 1292 ALSDENWVNAMHEELENFERNKVWSLVEPP 1321
Score = 311 bits (796), Expect = 1e-82
Identities = 156/293 (53%), Positives = 209/293 (71%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+DKTLF G ++ QIYVDDI+FGG S +V F M EFEMS++GEL +F GLQ
Sbjct: 1460 VDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQ 1519
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ ++ IF+ Q+KY+K L+KKF + TP AT L DE G +VDQ YRSMI
Sbjct: 1520 IKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIG 1579
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLTASRPDI FS+ +CAR+QA+P+ SH VKRI +YI T +YG +Y+ +S ++
Sbjct: 1580 SLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVR 1639
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
++ DAD+AG D KSTSG C FLG +L+SW ++KQ+ V+ ST EAEY+AA S C+Q+LW
Sbjct: 1640 AFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLW 1699
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEE 1517
M L++Y + + L C+N SAINI+KNP+QHSRTKHI+IR+HF++D VE+
Sbjct: 1700 MISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEK 1752
Score = 38.9 bits (89), Expect = 1.4
Identities = 38/167 (22%), Positives = 66/167 (38%), Gaps = 10/167 (5%)
Query: 155 FDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNTEDDDASEKDS 214
++MKVT+I E+ + + +D+L L+T EM V R K S+A V+ D S +
Sbjct: 166 WEMKVTSITESAPLSDLTMDKLYSKLKTHEMDVFHRKGLK-HSMALVA---DPSGSTSSN 221
Query: 215 DENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKEEDKYNKSKGVQ 274
D L + + E+ P D K S + ++ + ++
Sbjct: 222 DSAFVYGGFSLAALHSVTEEQLEKIPE---DDLALFARKFSRAYKNVRDRKRGKTNEPFV 278
Query: 275 CHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQVMRLTV 321
C EC H + C KK K T + G + + +M+ +
Sbjct: 279 CFECGEPNHKRVNCPKLKKKSDK---TTKKPEGQGRKGKKDLMKKAI 322
>gb|AAK53850.1| Putative retroelement [Oryza sativa]
Length = 916
Score = 370 bits (951), Expect = e-100
Identities = 226/588 (38%), Positives = 309/588 (52%), Gaps = 57/588 (9%)
Query: 544 SSKEDWYFDSGCSRHMNSVKMYLDNIKPHST--SFVTFGDGAKGRIKGSEKIVSGGSPNL 601
S W DSGC+ HM + ++ P+ T + FG KG++ G KI ++
Sbjct: 215 SGGRSWVIDSGCTNHMTREESMFSSLDPNGTLQENILFGYDGKGKVMGLGKIAISNDLSI 274
Query: 602 SNVLLVEGLTANLISISQLCDLDLNVSSNKAGCTV-TNENEEVVMTGVRSKDNCYMWSPQ 660
SNVLLV+ L NL+SISQLC + N TV ++ VV GV +
Sbjct: 275 SNVLLVKSLNYNLLSISQLCSMGYNCLFTDVDVTVFRRDDSSVVFKGVLKGMLYLVDFSS 334
Query: 661 NKAMSSMCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIG 720
KA CLV+ D LWH++ H+ ++ K++ + I G+ + E+D+VC CQ
Sbjct: 335 TKAKHETCLVAKSDMGWLWHRRLAHVGMRNLHKLLKHDHILGLTNVLFEKDRVCSVCQAR 394
Query: 721 KQTKTSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEK 780
KQ + TTR L+LLHMDL GP+ S GG +Y V VDDFSRFTWV FL +K
Sbjct: 395 KQIGAHRPVKNVMTTTRPLELLHMDLFGPIAYLSIGGNKYGLVIVDDFSRFTWV-FLHDK 453
Query: 781 SETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQN 840
SET +F++ +++ Q + D+GKEF+N + EGIKHEFSAP +PQQN
Sbjct: 454 SETQAIFKKFARRAQND----------DNGKEFKNTCIESFLDEEGIKHEFSAPYSPQQN 503
Query: 841 GVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKK 900
GV ERKNRTL + AR ML K + WAEAINTAC++ R+ + + YEL G K
Sbjct: 504 GVAERKNRTLIDMARTMLDEYKTSHRFWAEAINTACHVINRLCLHRLLKKSPYELLTGNK 563
Query: 901 PTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINV 960
P V YF VF S+CYIL + + K PK DEG LGY +N AY VFN +T ++E
Sbjct: 564 PNVSYFRVFGSKCYILNKKARSSKFAPKVDEGFLLGYGLNECAYHVFN-KTSGIVEITRD 622
Query: 961 VVDDMVSSLNEINVD----GDDNVPQ-------IVDERPNDCDIRSDTEPEEE------- 1002
V D + VD G++ VP + D RP + + + + E
Sbjct: 623 VTFDETNGSQVDQVDSHVLGEEEVPSEAIKRLALGDVRPREPQQGASSSTQVEPPTSTQA 682
Query: 1003 --------KEQESSKEIVPS----------IRIQKMHLKENIIGNLNEGVVTRSRDIIAN 1044
+ E +++ PS IQ+ H +NI+G++N+GV TRSR IAN
Sbjct: 683 DDPSTSSLDQGEEGEQVPPSPINLAHPRIYQSIQRDHPTDNILGDINKGVSTRSR--IAN 740
Query: 1045 AC----FISKIEPKNIKEALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
C +S +EP ++EAL D W+ MQEEL+ F RNEVW LV RP
Sbjct: 741 FCEHYSLVSSLEPLRVEEALNDPDWVMVMQEELNNFTRNEVWTLVERP 788
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 368 bits (945), Expect = e-100
Identities = 218/571 (38%), Positives = 310/571 (54%), Gaps = 34/571 (5%)
Query: 549 WYFDSGCSRHMNS-VKMYLDNIKPHSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLLV 607
W DSGCSRHM K + + +TFGD + GR+ I L +V LV
Sbjct: 369 WLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALV 428
Query: 608 EGLTANLISISQLCDLDLNVSSNKAGCTVTNENEEVVMTGVRSKDNCYMWSPQNKAMSSM 667
L NL+S+SQLCD +L V K V + +E V R + + S
Sbjct: 429 SKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVFDISRVGRVFFANFDSSAPGPSR 488
Query: 668 CLVSMED-EAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKTS 726
CLV+ E+ + WH++ GH+ + ++ + IRG+P+LK +D VC C+ GK T +S
Sbjct: 489 CLVASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGKMTSSS 548
Query: 727 HKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFEV 786
HK +T + T QLLHM+ +GP +S GGK YV V VDDFSR++WV FL K ETF
Sbjct: 549 HKPVTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGF 608
Query: 787 FRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVERK 846
F+ L++ L E + IRSD+G EF+N F +C + G++H+FS+P PQQNGVVERK
Sbjct: 609 FQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERK 668
Query: 847 NRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKYF 906
NRTL E AR ML P W EAI+ AC+I RV +R+ T YEL G++P V +
Sbjct: 669 NRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHL 728
Query: 907 YVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINV------ 960
VF +C++L K + +S +G+FLGY+ +S+AYRV+ T ++E+ V
Sbjct: 729 RVFGCKCFVLKS-GNLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEAS 787
Query: 961 ---------VVDDMVSSLNEINVDGDDNVPQIVDERP--NDCDIRSDTEPE--------- 1000
V+D+ + + + D DD++P +D P + S T P
Sbjct: 788 PGARPEISGVLDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSS 847
Query: 1001 --EEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGVV-TRSRDIIANACFISKIEPKNIK 1057
EE + +S P IQ H +++IG L E V RS D++ N+ F++ EPKN+
Sbjct: 848 AAEEIDGGTSGPTAPR-HIQNRHPPDSMIGGLGERVTRNRSYDLV-NSAFVASFEPKNVC 905
Query: 1058 EALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
AL+DE W+NAM EEL F+RN+VW LV P
Sbjct: 906 HALSDENWVNAMHEELENFERNKVWSLVEPP 936
Score = 311 bits (796), Expect = 1e-82
Identities = 156/293 (53%), Positives = 209/293 (71%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+DKTLF G ++ QIYVDDI+FGG S +V F M EFEMS++GEL +F GLQ
Sbjct: 1075 VDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQ 1134
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ ++ IF+ Q+KY+K L+KKF + TP AT L DE G +VDQ YRSMI
Sbjct: 1135 IKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIG 1194
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLTASRPDI FS+ +CAR+QA+P+ SH VKRI +YI T +YG +Y+ +S ++
Sbjct: 1195 SLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVR 1254
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
++ DAD+AG D KSTSG C FLG +L+SW ++KQ+ V+ ST EAEY+AA S C+Q+LW
Sbjct: 1255 AFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLW 1314
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEE 1517
M L++Y + + L C+N SAINI+KNP+QHSRTKHI+IR+HF++D VE+
Sbjct: 1315 MISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEK 1367
Score = 40.4 bits (93), Expect = 0.47
Identities = 39/167 (23%), Positives = 67/167 (39%), Gaps = 10/167 (5%)
Query: 155 FDMKVTAIEEAQDIGSIKVDELIGSLQTFEMSVNERSDKKSKSIAFVSNTEDDDASEKDS 214
++MKVT+I E+ + + +D+L L+T EM V R K S+A V+ D S +
Sbjct: 143 WEMKVTSITESAPLSDLTMDKLYSKLKTHEMDVFHRKGLK-HSMALVA---DPSGSTSSN 198
Query: 215 DENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDFARRKKEEDKYNKSKGVQ 274
D L + + E+ P ++ + R KK + ++
Sbjct: 199 DSAFVCGGFSLAALHSVTEEQLEKIPEDDLALFARKFSRAYKNVRNKK---RGKTNEPFV 255
Query: 275 CHECEGYEHIKAECATYLKKLGKGMVATWSDDDTGEEDEPQVMRLTV 321
C EC HI+ C KK K T + G + + +M+ +
Sbjct: 256 CFECGEPNHIRVNCPKLKKKSDK---TTKKPEGQGRKGKNDLMKKAI 299
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 361 bits (927), Expect = 9e-98
Identities = 212/573 (36%), Positives = 315/573 (53%), Gaps = 37/573 (6%)
Query: 549 WYFDSGCSRHMNSVKMYLDNIKP--HSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLL 606
W DSGC++HM + + + VTFGD +KG++ G KI ++ NV L
Sbjct: 558 WVLDSGCTQHMTGDRAMFTTFEVGGNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 617
Query: 607 VEGLTANLISISQLCDLDLNVSSNKAGCTVTNE-NEEVVMTGVRSKDNCYMWS-PQNKAM 664
V+ L NL+S++Q+CDL L+ + V++ ++ V G R N Y+ ++A
Sbjct: 618 VKSLNFNLLSVAQICDLVLSCAFFPQEVIVSSLLDKSCVFKGFRY-GNLYLGDFNSSEAN 676
Query: 665 SSMCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTK 724
CLV+ LWH++ H+ + K+ ++ + G+ +K E+DK+C CQ GKQ
Sbjct: 677 LKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVA 736
Query: 725 TSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETF 784
SH + + T+R L+LLHM+ GP +S GG + V VDD+SR+TW+ FL +KS
Sbjct: 737 CSHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNSHCLVIVDDYSRYTWMFFLHDKSIVA 796
Query: 785 EVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVE 844
E+F++ +++ Q E +VKIRSD+G +F+N +YC + GIKHE SA +PQQNGVVE
Sbjct: 797 ELFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIEDYCDDLGIKHELSATYSPQQNGVVE 856
Query: 845 RKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVK 904
KNRTL E AR ML V WAEAINTAC+ R+ + T YEL G+KP V
Sbjct: 857 MKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPNVA 916
Query: 905 YFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDD 964
YF VF +CYI + K + + DEG LGY+ NSKAYRV+N + E+ +V D+
Sbjct: 917 YFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDE 976
Query: 965 MVSS------LNEINVDG------------------DDNVPQIVDERPNDCDIRSDTEPE 1000
S L+++ +G +D + P+ S + E
Sbjct: 977 TNGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSATPSQAQVE 1036
Query: 1001 EEKEQESSKEIVPSIR--IQKMHLKENIIGNLNEGVVTRSRDIIANAC----FISKIEPK 1054
E+E+ + P I + K H + ++G++++GV TRSR +A+ C F+S +EPK
Sbjct: 1037 VEEEKAQDLPMPPRIHTALSKDHPIDQVLGDISKGVQTRSR--VASICEHYSFVSCLEPK 1094
Query: 1055 NIKEALTDEYWINAMQEELSQFKRNEVWDLVPR 1087
++ EAL D WINAM +EL+ F RN+VW LV R
Sbjct: 1095 HVDEALCDPDWINAMHKELNNFARNKVWTLVER 1127
Score = 293 bits (749), Expect = 4e-77
Identities = 150/291 (51%), Positives = 193/291 (65%), Gaps = 14/291 (4%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+D TLF K G + QIYVDDI+FG ++ + F M EFEMS++GEL++F GLQ
Sbjct: 1267 VDTTLFTKIIGDDFFVCQIYVDDIIFGCTNEVFCKEFGDMMSREFEMSMIGELSFFHGLQ 1326
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ++D F GLE + +TP AT+ L DE G VD LYRSMI
Sbjct: 1327 IKQLKDGTF--------------GLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIG 1372
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLTASRPDI FS+ +CAR+QAAPKE HL+ VKRI++Y+ ++ G +Y + L+
Sbjct: 1373 SLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLV 1432
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
Y D+D+AG D KSTSG C LG +L+SW +KKQN V+L EAEY++AGS C QLLW
Sbjct: 1433 GYSDSDYAGCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALFIAEAEYVSAGSCCAQLLW 1492
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLV 1515
MK +L +Y + L CEN SAI I+ NP+QHSRTKHIDIRHHF++D V
Sbjct: 1493 MKQILLDYGISFTKTPLLCENDSAIKIANNPVQHSRTKHIDIRHHFLRDHV 1543
Score = 50.8 bits (120), Expect = 3e-04
Identities = 40/149 (26%), Positives = 71/149 (46%), Gaps = 20/149 (13%)
Query: 144 SQKILRSLPKKFDMKVTAIEEAQDIGSIKVDELIGSLQTFEM-----SVNERSDKKSKSI 198
+QK+LR+LP+K++ VT + + D+ + L+G + T +M E + K I
Sbjct: 155 AQKMLRALPEKYETLVTMLINS-DMSRMTPASLLGKINTNDMYKLKKKEMEEASPSKKCI 213
Query: 199 AFVSNTEDDDASE-KDSDENLSEAISMLGRKFNKVVRRFERRPRPNVPDKRSDIGKHSDF 257
A + ED S+ + +++L E I +L R+FN ++ R R + G+ S+
Sbjct: 214 ALQAEVEDKSKSKVNEVNKDLEEEIVLLARRFNDLLGR------------RKERGRGSNS 261
Query: 258 ARRKKEEDKYNKSKGVQCHECEGYEHIKA 286
RR+ S ++C EC+ E A
Sbjct: 262 NRRRNRRPNKTLS-NLRCFECDSNEESSA 289
>gb|AAF79683.1| F9C16.17 [Arabidopsis thaliana] gi|25405863|pir||H96503 protein
F9C16.17 [imported] - Arabidopsis thaliana
Length = 873
Score = 361 bits (927), Expect = 9e-98
Identities = 212/509 (41%), Positives = 289/509 (56%), Gaps = 79/509 (15%)
Query: 607 VEGLTA-NLISISQLCDLDLNVSSNKA------GCTVTNENEEVVMTGVRSKDNCYMWSP 659
VE + A N+ ++ C++ NK+ GC ++ V + G RS +NCYMW+
Sbjct: 82 VESVVADNVTQRTEKCNVAYTSEINKSECKPWVGCRALDKQGSVKLEGQRSANNCYMWTS 141
Query: 660 QNKAMSSMCL-VSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQ 718
+S CL S+E++ K+WHQK GHLN ++ K+ + E +RG+P+L + VCG C
Sbjct: 142 -----NSTCLRPSLENDFKVWHQKLGHLNFKTLIKLANHEIVRGMPKLNSDSSFVCGPCN 196
Query: 719 IGKQTKTSHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLA 778
GKQ K +HK + IGTT +L+L+HMDLMGP++ +S GK Y+FV VDDF+R+TWV
Sbjct: 197 RGKQVKVNHKVVQDIGTTHALELIHMDLMGPINVQSRAGKTYIFVMVDDFTRYTWV---- 252
Query: 779 EKSETFEVFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQ 838
+ FEV ++ ++ + +++ + F N E+ N
Sbjct: 253 --LKQFEVIMVVNFRMSSSTRFAMIR------ELFINILHQEHLNN-------------- 290
Query: 839 QNGVVERKNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKG 898
NGVVERKNRTLQE AR MLH VP HLW EA+NTACYI RV +R GT T YELW+G
Sbjct: 291 -NGVVERKNRTLQEMARAMLHENDVPRHLWDEAVNTACYIINRVYVRRGTTKTPYELWEG 349
Query: 899 KKPTVKYFYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESI 958
K PTV YF+VF CYIL D++Q K D KSDEG+FLGYS SKAYRVFN RT+ + I
Sbjct: 350 KTPTVTYFHVFGCTCYILNDKDQLGKFDAKSDEGIFLGYSERSKAYRVFNKRTRLIQVVI 409
Query: 959 NVVVDDMVSSLNEINVDGDDNVPQIVDERPNDCDIRSDTEPEEEKEQESSKEIVPSIRIQ 1018
NV DD VP + +P + + S + Q+S KE +
Sbjct: 410 NVSFDDTY-------------VPVLPVLQPTN-NSESVNHESDSAIQKSRKE------MH 449
Query: 1019 KMHLKENIIGNLNEGVVTR-------------------SRDIIANACFISKIEPKNIKEA 1059
+ H K ++IG + G +TR + +I+ ACF+S +EPK+ KEA
Sbjct: 450 RNHSKTDVIGEIQGGRITRNVKVDYRQLAGKRQTTSPTNAEIVQFACFVSSVEPKDHKEA 509
Query: 1060 LTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
L +EY I AMQEEL QFKR+EVWDL P+P
Sbjct: 510 LIEEYCIAAMQEELGQFKRSEVWDLTPQP 538
Score = 162 bits (411), Expect = 6e-38
Identities = 113/299 (37%), Positives = 143/299 (47%), Gaps = 80/299 (26%)
Query: 1220 YNKRGIDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNY 1279
Y + +DKTLFV D ++I QIYVDDIVFG VE
Sbjct: 617 YVRGSVDKTLFVLKDDNGLLIVQIYVDDIVFGSTCQEYVE-------------------- 656
Query: 1280 FPGLQVKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLY 1339
S YAK LV+++GL+GS RTP KL+KDE G DVD+ +Y
Sbjct: 657 -----------------STYAKNLVERYGLKGSKTARTPMDVTDKLSKDEEGEDVDERVY 699
Query: 1340 RSMICSLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNS 1399
R MI SLLYLT SRPDI ++ VCARY+A PK SH++ +KRIIKY+N T + G Y N
Sbjct: 700 RGMIESLLYLTTSRPDICLAVGVCARYKAKPKASHMLAIKRIIKYVNSTVNLG-LYYTND 758
Query: 1400 NSNLISYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWC 1459
+ + + D W K + V + A W
Sbjct: 759 TTRSLMLTEPD-----------------------RW---KIDGVPVED-------ASLWE 785
Query: 1460 TQLLWMKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLVEEK 1518
T W R V + L I+I+KN +QHSRTKHIDIRHHFI++LVE K
Sbjct: 786 TT--WSHGTTRNRRVFHYL-------LLKISIAKNHVQHSRTKHIDIRHHFIRELVEAK 835
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 357 bits (916), Expect = 2e-96
Identities = 209/571 (36%), Positives = 310/571 (53%), Gaps = 31/571 (5%)
Query: 549 WYFDSGCSRHMNSVKMYLDNIKP--HSTSFVTFGDGAKGRIKGSEKIVSGGSPNLSNVLL 606
W DSGC++HM + + + VTFGD +KG++ G KI ++ NV L
Sbjct: 549 WVLDSGCTQHMTGDRAMFTTFEVGRNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 608
Query: 607 VEGLTANLISISQLCDLDLNVSSNKAGCTVTNE-NEEVVMTGVRSKDNCYMWSPQNKAMS 665
V+ L NL+S++Q+CDL L+ + V++ ++ V G R + + ++A
Sbjct: 609 VKSLNFNLLSVAQICDLSLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLVDFNSSEANL 668
Query: 666 SMCLVSMEDEAKLWHQK*GHLNPTSMKKVISKEAIRGIPRLKIEEDKVCGECQIGKQTKT 725
CLV+ LWH++ H+ + K ++ + G+ +K E+DK+C CQ GKQ
Sbjct: 669 KTCLVAKTSLGWLWHRRLAHVGMNQLSKFSKRDLVMGLKDVKFEKDKLCSACQAGKQVAC 728
Query: 726 SHKKLTQIGTTRSLQLLHMDLMGPMHKESFGGKRYVFVCVDDFSRFTWVNFLAEKSETFE 785
SH + + T++ L+LLHMDL P +S GG + V VDD+SR+TWV FL +KS +
Sbjct: 729 SHPTKSIMSTSKPLELLHMDLFDPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVAD 788
Query: 786 VFRELSQQLQGEKGYGIVKIRSDHGKEFENGKFSEYCGNEGIKHEFSAPITPQQNGVVER 845
+F++ +++ Q E +VKIRS+ G EF+N +YC + GIKHE A +PQQNGVVER
Sbjct: 789 LFKKFAKRAQNEFSCTLVKIRSNIGSEFKNTNIEDYCDDLGIKHELFATYSPQQNGVVER 848
Query: 846 KNRTLQESARVMLHAKKVPYHLWAEAINTACYIHYRVTIRSGTDSTLYELWKGKKPTVKY 905
KNRTL E AR ML V WAEAINTAC+ R+ + T YE+ G+KP + Y
Sbjct: 849 KNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRVLKKTSYEVIVGRKPNIAY 908
Query: 906 FYVFESRCYILTDREQRRKLDPKSDEGLFLGYSINSKAYRVFNSRTKTMMESINVVVDDM 965
F VF +CYI + K + + DEG LGY+ SKAYRV+N + E+ +V D+
Sbjct: 909 FRVFGCKCYIHRKGVRLTKFESRCDEGFLLGYASKSKAYRVYNKNKGIVEETADVQFDET 968
Query: 966 VSS------LNEINVDG----------DDNVPQIVDERPND----------CDIRSDTEP 999
S L+++ +G D P V+++P+ ++ E
Sbjct: 969 NGSQEGHENLDDVGDEGLMRVMKNMSIGDVKPIEVEDKPSTSTQDEPSTSAMPSQAQVEV 1028
Query: 1000 EEEKEQESSKEIVPSIRIQKMHLKENIIGNLNEGVVTRSR--DIIANACFISKIEPKNIK 1057
EEEK QE + K H + ++G++++GV TRSR I + F+S +E K++
Sbjct: 1029 EEEKAQEPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVTSICEHYSFVSCLERKHVD 1088
Query: 1058 EALTDEYWINAMQEELSQFKRNEVWDLVPRP 1088
EAL D W+NAM EEL F RN+VW LV RP
Sbjct: 1089 EALCDPDWMNAMHEELKNFARNKVWTLVERP 1119
Score = 311 bits (798), Expect = 8e-83
Identities = 154/291 (52%), Positives = 201/291 (68%)
Query: 1225 IDKTLFVKSDGGKVMIAQIYVDDIVFGGMSDHMVEHFVRHMKSEFEMSLVGELNYFPGLQ 1284
+D TLF K G + QIYVDDI+FG ++ + F M EFEMS++GEL++F GLQ
Sbjct: 1242 VDITLFTKIIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQ 1301
Query: 1285 VKQMQDSIFISQSKYAK*LVKKFGLEGSTHKRTPAATHIKLTKDESGTDVDQSLYRSMIC 1344
+KQ+++ F+SQ+KY K L+K+FGLE + +TP AT+ L DE G VD LYRSMI
Sbjct: 1302 IKQLKNGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIG 1361
Query: 1345 SLLYLTASRPDIAFSIDVCARYQAAPKESHLIHVKRIIKYINGTTDYGTFYAHNSNSNLI 1404
SLLYLT SRPDI FS+ +CAR+QAAPKE HL+ VKRI++Y+ ++ G +Y + L+
Sbjct: 1362 SLLYLTVSRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLV 1421
Query: 1405 SYCDADWAGNADDGKSTSGGCFFLGNNLISWFNKKQNCVSLSTTEAEYIAAGSWCTQLLW 1464
Y D D+AG D KSTS C LG +L+SW +KKQN V+LST E EY++AGS C QLLW
Sbjct: 1422 GYSDPDYAGCKVDRKSTSSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLW 1481
Query: 1465 MKHMLREYNVKQDVMTLYCENLSAINISKNPIQHSRTKHIDIRHHFIKDLV 1515
MK L +Y + L C+N AI I+ NP+QHSRTKHIDIRHHF++D V
Sbjct: 1482 MKQTLLDYGISFTKTPLLCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHV 1532
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.329 0.141 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,434,766,123
Number of Sequences: 2540612
Number of extensions: 101481861
Number of successful extensions: 376952
Number of sequences better than 10.0: 3739
Number of HSP's better than 10.0 without gapping: 2858
Number of HSP's successfully gapped in prelim test: 883
Number of HSP's that attempted gapping in prelim test: 366984
Number of HSP's gapped (non-prelim): 7012
length of query: 1518
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1377
effective length of database: 505,134,102
effective search space: 695569658454
effective search space used: 695569658454
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0166.12