BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0154.9
(839 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 314 9e-84
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 311 6e-83
gb|AAY23271.1| retrotransposon protein, putative, unclassified [... 310 1e-82
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 304 9e-81
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 302 3e-80
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 302 3e-80
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 301 4e-80
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 300 1e-79
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 300 1e-79
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 299 2e-79
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 298 6e-79
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 297 1e-78
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 295 5e-78
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 295 5e-78
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 292 4e-77
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 286 1e-75
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 283 1e-74
emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultiva... 281 5e-74
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 279 3e-73
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 279 3e-73
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 314 bits (804), Expect = 9e-84
Identities = 185/565 (32%), Positives = 293/565 (51%), Gaps = 31/565 (5%)
Query: 2 KSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKMKEFFEARFTN 61
+S ++W+ +GD+NT FFH N R+R + IR L DG +E+P +K+ + +F++ F
Sbjct: 64 RSGEKWLLEGDANTSFFHGVANGRKRKSLIRALEEDGRIIEEPAELKAHIYQFYKNLFGA 123
Query: 62 ISGDGVLLEGTTFRS---VSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIK 118
+ L + +S+E+ L R F EE+ A+ + D +PGPDG+ F +
Sbjct: 124 EVAPKIFLSQDMWMHRGRLSQEEREHLIRPFTFEEMDQALKQMKTDTAPGPDGFTVSFYR 183
Query: 119 SFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIV 178
+FW L+D +L+ + N I+LIPKV + + + PI L+ +K++
Sbjct: 184 AFWPQLRDQFKEMLDLLFEGRLDLWRINYGVISLIPKVKDANTIKAFRPICLLNVCFKLI 243
Query: 179 SKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFLVFKVDYEKV 238
+K+LT RL+ V ++I E+Q+AF+ GR +LD V++ +EV+ E K + ++ K+D+EK
Sbjct: 244 TKILTNRLTLVAHNVIGESQTAFIPGRFILDGVIILHEVLHEVKKTHQSGIILKLDFEKA 303
Query: 239 YDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGDPLA 298
YD V W+FLF +L++ GF KWI WIK V++ +NG F + + GDPL+
Sbjct: 304 YDKVQWSFLFDVLQKKGFDDKWIKWIKSATIDGRVAININGEIDQYFKTFRGVRQGDPLS 363
Query: 299 PFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVLAMK 358
P LF IVA+ LS ++ +A+ +G ++ LQ+ADDT+ + NV+ K
Sbjct: 364 PLLFNIVADALSEILLKAKEAGHLEGLVPHLVQGGLTHLQYADDTILFMTNNDQNVITTK 423
Query: 359 SMLRCFELMSGLKVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGANPRK 418
+L CFE MSGLK+N+ KS++ + + R A+L +CK + P YLGI +
Sbjct: 424 FILHCFEAMSGLKINYQKSEVIVLGENPEETKRVADLFNCKCGKFPMTYLGIPISEGRLT 483
Query: 419 KTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASLCNRI 478
K+ KRLS WK LS+GGK L+ +S P++ + F+ LP+ + I
Sbjct: 484 AADLAIPPDKIEKRLSTWKCGLLSYGGKAILV----NSSPMYMMGFYMLPEQTHQRMDSI 539
Query: 479 EKQFLWGGEEGTRKIAWVKWSKVCRLRMEG----------------SWESRT*SCLFLPC 522
+F W G E RK VKW +CR + G W + S PC
Sbjct: 540 RSRFFWEGIERKRKYHMVKWEALCRPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPC 599
Query: 523 --------WLNGIGGFLEAMEGCGR 539
+NG G F + EGC +
Sbjct: 600 CDLLRRKYMMNGGGFFQSSTEGCSQ 624
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 311 bits (797), Expect = 6e-83
Identities = 168/495 (33%), Positives = 272/495 (54%), Gaps = 7/495 (1%)
Query: 20 NSINWRRRTNAI------RGLVVDGGWVEDPKVVKSKMKEFFEARFTNISGDGVLLEGTT 73
+ + W R +N + LV DG +E + + + F++ F + + L
Sbjct: 164 HGLYWIRTSNPVYMWQKRHMLVQDGVCIEGQRDLMMYITNFYKNLFGHSQEVSISLSLDN 223
Query: 74 FRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIKSFWHVLKDDIVRVLE 133
V+EED + L +EE+R V+D + +KSPGPDG F FW ++K D++ ++
Sbjct: 224 VMKVTEEDAIGLITPVTMEELRNVVFDLKKNKSPGPDGMPGEFYIHFWDLIKHDLLDLIN 283
Query: 134 DFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIVSKVLTTRLSKVMGHI 193
DF N V N ITLIPK + + + PI L+ +KI++KVL RL+ M +I
Sbjct: 284 DFQRNSVNIDRLNFGVITLIPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLNGTMAYI 343
Query: 194 IDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFLVFKVDYEKVYDSVNWNFLFYMLRR 253
I + Q+AFL+ R +++ V++ +EV++ KK+ ++FKVD+EK YD VNW F++ ML+
Sbjct: 344 ISKQQTAFLKNRFIMEGVVILHEVLNSIHQKKQSGILFKVDFEKAYDKVNWVFIYRMLKA 403
Query: 254 LGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGDPLAPFLFLIVAECLSGMM 313
GF +W WI + V+V VN F K L GDPL+P LF + AE L+ ++
Sbjct: 404 KGFPDQWCDWIMKVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLV 463
Query: 314 RQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVLAMKSMLRCFELMSGLKVN 373
++A +L +G + ++++LQ+ADDT+F+ + +K +L FE +SGLK+N
Sbjct: 464 QRAEENSLIEGLGTNGDN-KIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKIN 522
Query: 374 FFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGANPRKKTTWDPLLSKLRKRL 433
F KS++ A++ Y+N+ CK +P YLGI + W +K+ +L
Sbjct: 523 FNKSEVFCFGEAKEKQDLYSNIFTCKVGSLPLKYLGIPIDQKRILNKDWKLAENKMEHKL 582
Query: 434 SLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASLCNRIEKQFLWGGEEGTRKI 493
W+ + S GG++ L+ S LSS+P++ +SF++LPKGV + K+FLW ++G RK
Sbjct: 583 GCWQGRLQSIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKY 642
Query: 494 AWVKWSKVCRLRMEG 508
V W VC R +G
Sbjct: 643 HLVNWPLVCSPRDQG 657
>gb|AAY23271.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 885
Score = 310 bits (795), Expect = 1e-82
Identities = 178/513 (34%), Positives = 273/513 (52%), Gaps = 16/513 (3%)
Query: 11 GDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKMKEFFEARFTNISGDGVLLE 70
GD+NTK++H N ++R I L D G +E +KS + +F++ F L+
Sbjct: 363 GDNNTKYYHMVANGKKRKKRIFFLDQDEGKIEGNIALKSYITKFYKNLFGPPEDTYCTLD 422
Query: 71 GTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIKSFWHVLKDDIVR 130
+ + ++ +IR AV++ E +K+PGPDG+ F ++FW V+KDD++
Sbjct: 423 ESRIEDIPQD------------KIRGAVFEMEHNKAPGPDGFPAEFYQNFWEVIKDDLMN 470
Query: 131 VLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIVSKVLTTRLSKVM 190
+ DFH + N ITL+PKV+ + Y PI L+ +KI +KV T R++ V
Sbjct: 471 LFRDFHVGDLPLFSLNFEIITLLPKVHEANHIQQYRPICLLNVSFKIFTKVATNRINFVA 530
Query: 191 GHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFLVFKVDYEKVYDSVNWNFLFYM 250
H++ +Q AF+ GR +L+ V+V +E + E KK ++FKVD+EK YD VNW FL
Sbjct: 531 DHVVSSSQIAFMRGRNILEGVVVLHETVHELHRKKLNGVIFKVDFEKAYDKVNWPFLLQT 590
Query: 251 LRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGDPLAPFLFLIVAECLS 310
L GF KWI W++ I SV V VN F +K + GDPL+P LF I+A+ L+
Sbjct: 591 LHMKGFSPKWISWVESFISGGSVVVKVNDEVGHFFQTKKGVRQGDPLSPILFNIIADMLT 650
Query: 311 GMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVLAMKSMLRCFELMSGL 370
++ +A+ G ++S+LQ+ADDT+ MK +L FE +SGL
Sbjct: 651 VLINRAKEDGQITGVVPHLINDDLSILQYADDTVLFMGHDLQKARNMKLLLFVFEQLSGL 710
Query: 371 KVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGANPRKKTTWDPLLSKLR 430
K+NF KS+L +D Y L C T + PF YLGI + + W ++
Sbjct: 711 KINFHKSELYCFGEGKDFENEYMELFGCSTGQFPFRYLGIPIHYRRLRNADWKEVVECFE 770
Query: 431 KRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASLCNRIEKQFLWGGEEGT 490
KRLS WK K LS GG++ LI SVLSS+PL+ +SFF +P G+ + + +F W +G
Sbjct: 771 KRLSSWKGKLLSTGGRLTLINSVLSSLPLYMMSFFAIPIGILTKLDYFRSRFYW-QSDGQ 829
Query: 491 RKIAW--VKWSKV-CRLRMEGSWESRT*SCLFL 520
+K+ + + W + L+ GS + +C L
Sbjct: 830 KKVIYSLIHWLRTWAILQKPGSQDMVVAACQHL 862
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 304 bits (778), Expect = 9e-81
Identities = 177/517 (34%), Positives = 281/517 (54%), Gaps = 12/517 (2%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLV-VDGGWVEDPKVVKSKMKEFFEARF 59
Q+SR W+ GD NT +FH RR N + + ++G + + + +F+ F
Sbjct: 233 QRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIF 292
Query: 60 TNIS-GDGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIK 118
T+ S GD +++ VS+ DN LTR N EE++ AV+ K+PGPDG+ F
Sbjct: 293 TSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYH 352
Query: 119 SFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIV 178
S+WH++ D+ R + F T+ +P+ N + I LIPK P + DY PI+L YKIV
Sbjct: 353 SYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIV 412
Query: 179 SKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVID---EAKVKKRGFLVFKVDY 235
+K++T R+ ++ +I ENQSAF+ GR + D+VL+ +EV+ + KK + K D
Sbjct: 413 AKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDM 472
Query: 236 EKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGD 295
K YD V W+FL +L+R GF++ WI W+ C+ S S S L+NG+P + + L GD
Sbjct: 473 SKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGD 532
Query: 296 PLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVL 355
PL+P LF++ E LSG+ +A+RL G +V G V+ L FADDT+F + +
Sbjct: 533 PLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCN 592
Query: 356 AMKSMLRCFELMSGLKVNFFKSKLAGVS-VAEDVLLRYANLLHCKTTEIPFVYLGIHVGA 414
+ +L + SG +NF KS + S V + +L + YLG+
Sbjct: 593 KLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHF 652
Query: 415 NPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASL 474
RK+ + ++ K+R++ W + LS GK ++++VL+S+PL+ +S FKLP ++L
Sbjct: 653 GRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLP---SAL 709
Query: 475 CNRIEK---QFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
C +I+ +F W + RK +WV WSK+ + G
Sbjct: 710 CRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAG 746
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 302 bits (774), Expect = 3e-80
Identities = 173/511 (33%), Positives = 281/511 (54%), Gaps = 14/511 (2%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVE--DPKVVKSKMKEFFEAR 58
Q SR +W+ GD N +FH + RR N + ++ DG E + + + S + +F+
Sbjct: 279 QWSRVQWLNSGDRNKGYFHATTRTRRMLNNL-SVIEDGSGQEFHEEEQIASTISSYFQNI 337
Query: 59 FTNISGDGV-LLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFI 117
FT + + +++ +S N L + +L EI+ A++ DK+PGPDG++ F
Sbjct: 338 FTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFF 397
Query: 118 KSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKI 177
++W +++ D+ R + F + N + +TLIPK++ P ++DY PI+L YKI
Sbjct: 398 HAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKI 457
Query: 178 VSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKV---KKRGFLVFKVD 234
V+K+LT RL + +I +QSAF+ GR + D+VL+ +E++ +V KK + K D
Sbjct: 458 VAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTD 517
Query: 235 YEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLG 294
K YD + WNFL +L RLGF+ KWI W+ C+ + S S L+NGSP + L G
Sbjct: 518 MSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQG 577
Query: 295 DPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNV 354
DPL+P+LF++ E LSG+ R+A+ + G +V R +V+ L FADDT+F + +
Sbjct: 578 DPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCC 637
Query: 355 LAMKSMLRCFELMSGLKVNFFKSKLAGVS-VAEDVLLRYANLLHCKTTEIPFVYLGIHVG 413
A+ ++L+ +EL SG +N KS + S +D+ R L YLG+
Sbjct: 638 GALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEH 697
Query: 414 ANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVAS 473
RK+ + ++ ++R+R W + LS GK L+++VLSS+P + + FKLP AS
Sbjct: 698 FGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLP---AS 754
Query: 474 LCNRIEK---QFLWGGEEGTRKIAWVKWSKV 501
LC +I+ +F W + RK+AWV W K+
Sbjct: 755 LCKQIQSVLTRFWWDSKPDKRKMAWVSWDKL 785
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 302 bits (773), Expect = 3e-80
Identities = 175/516 (33%), Positives = 271/516 (51%), Gaps = 10/516 (1%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGG-WVEDPKVVKSKMKEFFEARF 59
QKSR W+K GD+N+KFFH RR N I GL + G W + +++ +F+ F
Sbjct: 122 QKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLF 181
Query: 60 TNISG---DGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHF 116
T + D L E +++ N LT E+R A++ +K+PGPDG F
Sbjct: 182 TTANPQVFDEALGEVQVL--ITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALF 239
Query: 117 IKSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYK 176
+ W ++K D++ ++ F GV+ K N++ I LIPK P + + PISL YK
Sbjct: 240 FQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYK 299
Query: 177 IVSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVK---KRGFLVFKV 233
++SK+L RL V+ ++I E QSAF++GR + D++L+A E+ + K F+ K
Sbjct: 300 VISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKT 359
Query: 234 DYEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLML 293
D K YD V WNF+ +LR++GF KWI WI CI + VL+NG P E+ L
Sbjct: 360 DMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQ 419
Query: 294 GDPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHN 353
GDPL+P+LF++ E L +R+A R NL G KV VS L FADD+LF + +
Sbjct: 420 GDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQ 479
Query: 354 VLAMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGIHV 412
+ +L+ +E +SG ++NF KS + G V + + +L YLG+
Sbjct: 480 CGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPE 539
Query: 413 GANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVA 472
K + + +L+ R++ W K LS GGK +I+SV +++P + +S F+LPK +
Sbjct: 540 SLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAIT 599
Query: 473 SLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
S +F W +R + W+ W K+C + +G
Sbjct: 600 SKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDG 635
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 301 bits (772), Expect = 4e-80
Identities = 173/518 (33%), Positives = 276/518 (52%), Gaps = 14/518 (2%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWV-EDPKVVKSKMKEFFEARF 59
QKSR++W+K+GD NT +FH R N + ++ D G + K + + ++FF
Sbjct: 720 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFF---- 775
Query: 60 TNI-SGDGVLLEGTTFR----SVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNF 114
TNI S +G+ + F +V+ NL LT+ F+ EI A+ DK+PGPDG
Sbjct: 776 TNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTA 835
Query: 115 HFIKSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCM 174
F K+ W ++ D++ ++ F N + I +IPK+ NP L+DY PI+L +
Sbjct: 836 RFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVL 895
Query: 175 YKIVSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKR---GFLVF 231
YK++SK L RL + I+ ++Q+AF+ GR + D+V++A+EV+ KV+KR ++
Sbjct: 896 YKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAV 955
Query: 232 KVDYEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRL 291
K D K YD V W+FL +R GF KWIGWI ++S SVL+NGSP + +
Sbjct: 956 KTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGI 1015
Query: 292 MLGDPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPST 351
GDPL+P+LF++ + LS ++ +G ++G ++ LQFADD+LF + +
Sbjct: 1016 RQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANV 1075
Query: 352 HNVLAMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGI 410
N A+K + +E SG K+N KS + G V R +L YLG+
Sbjct: 1076 RNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGL 1135
Query: 411 HVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKG 470
+KK ++ ++ +++KR S W + LS GK +++SV ++P++ +S FKLPKG
Sbjct: 1136 PEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKG 1195
Query: 471 VASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
+ S + F W R I WV W ++ + EG
Sbjct: 1196 IVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEG 1233
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 300 bits (769), Expect = 1e-79
Identities = 172/518 (33%), Positives = 276/518 (53%), Gaps = 14/518 (2%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWV-EDPKVVKSKMKEFFEARF 59
QKSR++W+K+GD NT +FH R N + ++ D G + K + + ++FF
Sbjct: 494 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFF---- 549
Query: 60 TNI-SGDGVLLEGTTFR----SVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNF 114
TNI S +G+ + F +V+ NL LT+ F+ EI A+ DK+PGPDG
Sbjct: 550 TNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTA 609
Query: 115 HFIKSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCM 174
F K+ W ++ D++ ++ F N + I +IPK+ NP L+DY PI+L +
Sbjct: 610 RFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVL 669
Query: 175 YKIVSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKR---GFLVF 231
YK++SK L RL + I+ ++Q+AF+ GR + D+V++A+EV+ KV+KR ++
Sbjct: 670 YKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAV 729
Query: 232 KVDYEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRL 291
K D K YD V W+FL +R GF KWIGWI ++S SVL+NGSP + +
Sbjct: 730 KTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGI 789
Query: 292 MLGDPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPST 351
GDPL+P+LF++ + LS ++ +G ++G ++ LQFADD+LF + +
Sbjct: 790 RQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANV 849
Query: 352 HNVLAMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGI 410
N A+K + +E SG K+N KS + G V + +L YLG+
Sbjct: 850 RNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGL 909
Query: 411 HVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKG 470
+KK ++ ++ +++KR S W + LS GK +++SV ++P++ +S FKLPKG
Sbjct: 910 PEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKG 969
Query: 471 VASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
+ S + F W R I WV W ++ + EG
Sbjct: 970 IVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEG 1007
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 300 bits (768), Expect = 1e-79
Identities = 155/419 (36%), Positives = 231/419 (54%)
Query: 90 NLEEIRTAVWDCEGDKSPGPDGYNFHFIKSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSF 149
+L EI+ A++ + +K+PGPDG+ F + FW V+K D++ + +FH+ + N
Sbjct: 665 HLREIKEAIFAMDHNKAPGPDGFPVEFYQKFWEVIKHDLLNLFNEFHSGSLPIFGLNFGV 724
Query: 150 ITLIPKVNNPMGLNDYIPISLIGCMYKIVSKVLTTRLSKVMGHIIDENQSAFLEGRQLLD 209
ITLIPKV + Y PI L+ YKI +KV T R+S V ++++ Q+AF+ GR +LD
Sbjct: 725 ITLIPKVEEANRIQQYRPICLLNVSYKIFTKVATNRISSVADNLVNPTQTAFMRGRNILD 784
Query: 210 SVLVANEVIDEAKVKKRGFLVFKVDYEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQ 269
V + +E + E KK ++FK+D+EK YD V W FL LR GF KWI WIK I
Sbjct: 785 GVAIIHETVHELHRKKLNGVIFKIDFEKAYDKVKWPFLLQTLRMKGFSPKWISWIKSFIV 844
Query: 270 SASVSVLVNGSPTDEF*MEKRLMLGDPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGR 329
SV+V VN F +K L GDPL+P LF + + L+ ++ +A+ G
Sbjct: 845 GGSVAVKVNDDVGPFFQTKKGLQQGDPLSPILFNFIVDMLATLINRAKTQGQVDGLIPHL 904
Query: 330 EGVEVSLLQFADDTLFIYEPSTHNVLAMKSMLRCFELMSGLKVNFFKSKLAGVSVAEDVL 389
+S+LQ+ DD + MKS+L FE +SGLK+NF KS+L A +
Sbjct: 905 IDGGLSILQYVDDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYR 964
Query: 390 LRYANLLHCKTTEIPFVYLGIHVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCL 449
+YA L C+ PF YLGI + + W ++ + K+LS WK K LS GG++ L
Sbjct: 965 DQYAQLFGCQVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTL 1024
Query: 450 IRSVLSSIPLFYLSFFKLPKGVASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
I SVLSS+P++ +SF +P GV + + +F W G+ +K KW +CR + +G
Sbjct: 1025 INSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKKYQLAKWDIICRPKDQG 1083
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 299 bits (766), Expect = 2e-79
Identities = 170/514 (33%), Positives = 275/514 (53%), Gaps = 6/514 (1%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGG-WVEDPKVVKSKMKEFFEARF 59
QKSR W+K GD+N+K+FH RR N I GL + G W + K V+ +FE F
Sbjct: 188 QKSRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVSYFETLF 247
Query: 60 TNISGDGVLLEGTTFRS-VSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIK 118
+ + + ++ ++++ N LT +E+R A++ +K+PGPDG F +
Sbjct: 248 NKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMTALFFQ 307
Query: 119 SFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIV 178
W +K D++ ++ F +GV+ K+ N++ I LIPK P + + PISL YKI+
Sbjct: 308 KPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCNVGYKII 367
Query: 179 SKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVK---KRGFLVFKVDY 235
SK+L RL K++ +I E SAF+EGR + D++L+A E+ + K F+ K D
Sbjct: 368 SKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDM 427
Query: 236 EKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGD 295
K YD V WNF+ +L+++GF KWI WI CI + VL+NG P ++ L GD
Sbjct: 428 SKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGD 487
Query: 296 PLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVL 355
PL+P+LF++ E L +R+A + L G KV VS L FA+D+LF + +
Sbjct: 488 PLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCG 547
Query: 356 AMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGA 414
+ +L+ +E +SG +NF KS + G V +D+ + L + YLG+
Sbjct: 548 VILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESL 607
Query: 415 NPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASL 474
K + + +L+ R++ W K LS GGK +I+SV++ +P + +S F+LPK + S
Sbjct: 608 GGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSK 667
Query: 475 CNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
+F W + +R + W+ W+K+C + +G
Sbjct: 668 LTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADG 701
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 298 bits (762), Expect = 6e-79
Identities = 156/454 (34%), Positives = 251/454 (54%), Gaps = 6/454 (1%)
Query: 50 KMKEFFEARFTNISGDGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGP 109
++++F N+SG V++ +N L+ +F E++ A++ E +K+PGP
Sbjct: 1114 RLRQFLRGWAKNVSG------AIKREKVTDVENELLSESFKELEVKEAIFQMEHNKAPGP 1167
Query: 110 DGYNFHFIKSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPIS 169
DG+ F + FW V+KDD++ V DFH + ITL+PK + + Y PI
Sbjct: 1168 DGFPAEFYQVFWDVIKDDLMAVFCDFHEGTLPLHRLKFGIITLLPKQKDASRIQQYRPIC 1227
Query: 170 LIGCMYKIVSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFL 229
L+ +KI +KV+ R++ V +I +Q+ FL GR +++ V++ +E + E KK+ +
Sbjct: 1228 LLNVSFKIFTKVMANRIALVAQKVIKPSQTTFLSGRNIMEGVVILHETLHELHKKKKNGV 1287
Query: 230 VFKVDYEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEK 289
+ K+D+EK YD V+W FL LR GF +KW WI ++ SV+V VN F K
Sbjct: 1288 ILKLDFEKAYDKVDWKFLQQSLRMKGFSSKWCDWIDSIVRGGSVAVKVNDEIGSYFQTRK 1347
Query: 290 RLMLGDPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEP 349
L GDPL+P LF +V + L+ ++++A+ +KG +S+LQ+ADDT+ +
Sbjct: 1348 GLRQGDPLSPILFNLVVDMLAILIQRAKDQGRFKGVVPHLVDNGLSILQYADDTILFMDH 1407
Query: 350 STHNVLAMKSMLRCFELMSGLKVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLG 409
+K +L FE +S LK+NF+KS+L A+DV Y L C T + PF YLG
Sbjct: 1408 DLDEARDLKLVLSTFEKLSSLKINFYKSELFCYGKAKDVEHEYVKLFGCDTEDYPFKYLG 1467
Query: 410 IHVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPK 469
I + W + +++K+LS WK K LS GG++ LI SVLS++ +F LSFF++PK
Sbjct: 1468 IRMHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSFFEIPK 1527
Query: 470 GVASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCR 503
G+ + +F W +E +K +WS +C+
Sbjct: 1528 GILKKLDYYRSRFFWQCDEHKKKYRLARWSVLCK 1561
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 297 bits (760), Expect = 1e-78
Identities = 166/508 (32%), Positives = 281/508 (54%), Gaps = 25/508 (4%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKMKEFFEARFT 60
Q+S+++ + +GD NTK++H N R+R + I L + G +E + + + + F++ F
Sbjct: 337 QRSKEKELLEGDCNTKYYHAKANGRKRKSYIHSLTQEEGEIEGQEKLLTYITSFYKDLFG 396
Query: 61 NISGDGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIKSF 120
+ + + L+ ++ EE + LT+ F+ EE+R V++ + +K+PGPDG+
Sbjct: 397 HPKQNTLFLDMRGVTTIMEEHKVMLTKPFSEEEVRIVVFELKKNKAPGPDGF-------- 448
Query: 121 WHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIVSK 180
+ DI R+ N I LIPK+ + + Y PI L+ +KI++K
Sbjct: 449 --IGLVDIDRL--------------NFGVINLIPKIKDAAQIQKYRPICLLNVSFKIITK 492
Query: 181 VLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFLVFKVDYEKVYD 240
VL R++++M +II +NQ+AFL+ R +++ VL+ +E+++ KK+ ++FKVD+EK YD
Sbjct: 493 VLMNRITEIMTYIISKNQTAFLKNRFIMEGVLILHEILNSLHQKKQSGVLFKVDFEKAYD 552
Query: 241 SVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGDPLAPF 300
V+W F++ ML+ F +W W+ I V+V VN F K L GDPL+P
Sbjct: 553 KVDWVFIYRMLKAKEFPDQWCDWVMKVIMGGKVAVQVNDQVGPYFKTHKGLRQGDPLSPL 612
Query: 301 LFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVLAMKSM 360
LF + A+ L ++++A L +G + +V +LQ+ADDT+F+ + +K +
Sbjct: 613 LFNLAAKALILLVQRAEDNLLIEGLG-ENDNNKVVILQYADDTIFLLPDNETYAKNLKYI 671
Query: 361 LRCFELMSGLKVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGANPRKKT 420
L FE +SGLK+NF KS++ + A D ++ + C +P YLGI + K
Sbjct: 672 LCLFEQLSGLKINFNKSEVFCIGEAADKAEVFSQIFTCSVGVLPMKYLGIPLDQKRITKK 731
Query: 421 TWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASLCNRIEK 480
W +K+ +L W+ K S GG++ LI S LSS+P++ +SFFKLPKGV + +
Sbjct: 732 DWRNAENKMESKLGCWQGKLQSIGGRLILINSSLSSVPMYMISFFKLPKGVKEKMDFFRR 791
Query: 481 QFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
+FLW ++G RK V+W +C R +G
Sbjct: 792 RFLWQEDQGIRKYHLVQWPIICSPRDQG 819
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 295 bits (754), Expect = 5e-78
Identities = 168/514 (32%), Positives = 277/514 (53%), Gaps = 6/514 (1%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWV-EDPKVVKSKMKEFFEARF 59
QKSR++W+K+GD NT+FFH R N + + + G + K + +EFF +
Sbjct: 700 QKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY 759
Query: 60 TNISGDGVLLEGTTFRS-VSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIK 118
+ +++ F+ V+E+ N LT+ + EI A+ DK+PGPDG F K
Sbjct: 760 ESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 819
Query: 119 SFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIV 178
S W ++ D+++ ++ F + N + I +IPK+ NP L+DY PI+L +YKI+
Sbjct: 820 SCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKII 879
Query: 179 SKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKR---GFLVFKVDY 235
SK L RL + I+ ++Q+AF+ GR + D+V++A+E++ K +KR ++ K D
Sbjct: 880 SKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDV 939
Query: 236 EKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGD 295
K YD V WNFL +R GF WI WI G ++S + SVLVNG P ++ + GD
Sbjct: 940 SKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGD 999
Query: 296 PLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVL 355
PL+P+LF++ A+ L+ +++ +G ++G V+ LQFADD+LF + + N
Sbjct: 1000 PLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQ 1059
Query: 356 AMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGA 414
A+K + +E SG K+N KS + G V R N+L ++ YLG+
Sbjct: 1060 ALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQF 1119
Query: 415 NPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASL 474
+K+ ++ ++ +++KR S W K LS GK +++SV S+P++ +S FKLP + S
Sbjct: 1120 GRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSE 1179
Query: 475 CNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
+ F W R+I W+ W ++ + EG
Sbjct: 1180 IEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEG 1213
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 295 bits (754), Expect = 5e-78
Identities = 168/514 (32%), Positives = 277/514 (53%), Gaps = 6/514 (1%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWV-EDPKVVKSKMKEFFEARF 59
QKSR++W+K+GD NT+FFH R N + + + G + K + +EFF +
Sbjct: 720 QKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY 779
Query: 60 TNISGDGVLLEGTTFRS-VSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIK 118
+ +++ F+ V+E+ N LT+ + EI A+ DK+PGPDG F K
Sbjct: 780 ESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 839
Query: 119 SFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIV 178
S W ++ D+++ ++ F + N + I +IPK+ NP L+DY PI+L +YKI+
Sbjct: 840 SCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKII 899
Query: 179 SKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKR---GFLVFKVDY 235
SK L RL + I+ ++Q+AF+ GR + D+V++A+E++ K +KR ++ K D
Sbjct: 900 SKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDV 959
Query: 236 EKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGD 295
K YD V WNFL +R GF WI WI G ++S + SVLVNG P ++ + GD
Sbjct: 960 SKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGD 1019
Query: 296 PLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVL 355
PL+P+LF++ A+ L+ +++ +G ++G V+ LQFADD+LF + + N
Sbjct: 1020 PLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQ 1079
Query: 356 AMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGA 414
A+K + +E SG K+N KS + G V R N+L ++ YLG+
Sbjct: 1080 ALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQF 1139
Query: 415 NPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASL 474
+K+ ++ ++ +++KR S W K LS GK +++SV S+P++ +S FKLP + S
Sbjct: 1140 GRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSE 1199
Query: 475 CNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
+ F W R+I W+ W ++ + EG
Sbjct: 1200 IEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEG 1233
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 292 bits (747), Expect = 4e-77
Identities = 176/523 (33%), Positives = 276/523 (52%), Gaps = 8/523 (1%)
Query: 2 KSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKMK-EFFEARFT 60
KSRD+W+ GD N+KFF ++ R +N++R LV + G + K K+ FFE F+
Sbjct: 68 KSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFS 127
Query: 61 NI--SGDGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIK 118
+ S +LEG R V+E+ N LT+ N +EI AV+ + +PGPDG+ F +
Sbjct: 128 SSYPSSMDSVLEGFNKR-VTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQ 186
Query: 119 SFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIV 178
W ++K+ I+ +E F G+ P++ N + + LIPK+ P + D PISL MYKI+
Sbjct: 187 RQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKII 246
Query: 179 SKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKK---RGFLVFKVDY 235
SK+L+ RL K + I+ QSAF+ R + D++++A+E++ + + + F+VFK D
Sbjct: 247 SKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDM 306
Query: 236 EKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGD 295
K YD V W FL +L LGF + WI W+ C+ S S SVL+NG P + L GD
Sbjct: 307 SKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGD 366
Query: 296 PLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVL 355
PL+PFLF++ E L ++ QA ++ G + G V+ L FADDTL I + S
Sbjct: 367 PLSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECA 426
Query: 356 AMKSMLRCFELMSGLKVNFFKSKLA-GVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGA 414
+ L + +SG +N KS + G V E+ N +T YLG+
Sbjct: 427 EIMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECF 486
Query: 415 NPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASL 474
K+ + + KL+ RLS W KTLS GGK L++S+ + P++ ++ F+L K + +
Sbjct: 487 QGSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTK 546
Query: 475 CNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEGSWESRT*SC 517
+ F W + +KI W+ K+ + G + + C
Sbjct: 547 LTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQC 589
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 286 bits (733), Expect = 1e-75
Identities = 169/521 (32%), Positives = 266/521 (50%), Gaps = 20/521 (3%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDP-KVVKSKMKEFFEARF 59
Q+SR W+K+GD NT+FFH+ WR + N I L + G + V+++ E+F+ +
Sbjct: 978 QRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVY 1037
Query: 60 TNISGDGVLLEGTTFR----SVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFH 115
D L + R V++ N L + F EEI A++ KSP PDG+
Sbjct: 1038 ---KADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPAR 1094
Query: 116 FIKSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMY 175
F + W LK DI+ + +F +G+ PK N + I LIPK + P+ L DY PISL +Y
Sbjct: 1095 FYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVY 1154
Query: 176 KIVSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEV---IDEAKVKKRGFLVFK 232
K+VSK L RL ++ ++ + QSAF++GR + D+ L+A E I + K +K
Sbjct: 1155 KVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYK 1214
Query: 233 VDYEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLM 292
+D K YD V+W FL L +LGF +W+ WI C+ + SV NG+ F + L
Sbjct: 1215 LDLSKAYDRVDWRFLELALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLR 1274
Query: 293 LGDPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTH 352
G+PL+PFLFL VA+ LS ++++ N K+ R+ +S L FADDTL ++
Sbjct: 1275 QGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKK 1334
Query: 353 NVLAMKSMLRCF-----ELMSGLKVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVY 407
+K +L + +L++ K + + + SV+ED+ N L + Y
Sbjct: 1335 EAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSEDI----RNTLQVERDNFEDRY 1390
Query: 408 LGIHVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKL 467
LG K + L +K+ KR+ W LS GGK LI++V+ +IP++ + FK
Sbjct: 1391 LGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKF 1450
Query: 468 PKGVASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEG 508
P V ++ + F WG + G R+ W W + + ++ G
Sbjct: 1451 PDSVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKING 1491
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 283 bits (725), Expect = 1e-74
Identities = 155/497 (31%), Positives = 270/497 (54%), Gaps = 4/497 (0%)
Query: 5 DRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKMKEFFEARFTNISG 64
++W+ +GD NT+++H N R++ I L+ + + +K + E++++ F + S
Sbjct: 971 EQWLLEGDRNTEYYHRIANGRKKRCTITSLMDGDRELTTKEDLKHHIVEYYKSLFRSESS 1030
Query: 65 DGV-LLEGTTFRSV--SEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFIKSFW 121
+ L +G S+ EED L R F +EE+ + + + + + GPDG++ F ++FW
Sbjct: 1031 SSIHLSQGVWVDSLCLKEEDKNTLMRPFTIEELYKVLREAKPNTAFGPDGFSIPFYRAFW 1090
Query: 122 HVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKIVSKV 181
L+ D+ +L + + K N I+LIPK +NP + + PI ++ +K +SK
Sbjct: 1091 PQLRPDLFEMLLMLYNEELDLKRLNFGVISLIPKNSNPTDIKQFRPICVLNDCFKFISKC 1150
Query: 182 LTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFLVFKVDYEKVYDS 241
+ RL+++ +I Q+AF+ GR +L+ ++ +EV+ E K ++ K+D+EK YD
Sbjct: 1151 VCNRLTEIARDVISPTQTAFIPGRFILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAYDK 1210
Query: 242 VNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGDPLAPFL 301
V+W+FL ++ R GF +KW+ WIK C+ V + +NG TD F + L GDPL+P L
Sbjct: 1211 VSWDFLIEVMVRKGFPSKWVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPLSPLL 1270
Query: 302 FLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVLAMKSML 361
F ++++ L+ M+ A+R + G ++ LQ+ADDT+ ++A K +L
Sbjct: 1271 FNLISDALAAMLDSAKREGVLSGLVPDIFPGGITHLQYADDTVLFVANDDKQIVATKFIL 1330
Query: 362 RCFELMSGLKVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGANPRKKTT 421
CFE M+ LKVN+ KS++ + ++++ R A + +C + P YLG+ +G +
Sbjct: 1331 YCFEEMAVLKVNYHKSEIFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIGPDKILNLG 1390
Query: 422 WDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPKGVASLCNRIEKQ 481
+D L KL KRL+ W LS G+ I + LSSIP + + F++LP+GV I +
Sbjct: 1391 FDFLGQKLEKRLNSW-GNNLSHAGRAVQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGR 1449
Query: 482 FLWGGEEGTRKIAWVKW 498
+ W K VKW
Sbjct: 1450 YYWARNRLKGKYHMVKW 1466
>emb|CAE05097.3| OSJNBa0009K15.17 [Oryza sativa (japonica cultivar-group)]
Length = 779
Score = 281 bits (720), Expect = 5e-74
Identities = 166/491 (33%), Positives = 260/491 (52%), Gaps = 18/491 (3%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKMKEFFEARFT 60
++S ++W+ +GD+NT FFH N ++R IR L DG +E ++ + +++ F
Sbjct: 63 ERSGEKWLLEGDANTTFFHGVANGKKRIITIRSLEEDGRVIEGNSELREHITRYYKGLFG 122
Query: 61 NISGDGVLLEGTTFRS---VSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFI 117
+ V L R V +EDN L R F++EEI A+ + + + +PGPDG F
Sbjct: 123 SELPPKVFLSQDMRRDRGRVDQEDNDFLVRPFSMEEIERALAEMKTNTAPGPDGLPVCFY 182
Query: 118 KSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKI 177
K FW LKD I +L+ + N ITLIPK+ + + PI L+ +K+
Sbjct: 183 KEFWEQLKDQIKEMLDSLFEGRLDLWRLNYGVITLIPKIKEANNIKAFRPICLLNVCFKL 242
Query: 178 VSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKRGFLVFKVDYEK 237
++KVLT R++ V +I E+Q+AFL GR +LD V++ +EV+ E K + ++ K+D+EK
Sbjct: 243 LTKVLTMRITHVANKVIGESQTAFLPGRFILDGVVILHEVLHELKNSGQSGIILKLDFEK 302
Query: 238 VYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLGDPL 297
YD V W+FLF +L+R GF KWIGWIK SV++ +NG F K + GDPL
Sbjct: 303 AYDKVQWDFLFDVLQRKGFCEKWIGWIKAATTKGSVAININGEVDQFFRTHKGVRQGDPL 362
Query: 298 APFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNVLAM 357
+P +F +VA+ L M+ +A+ +G ++ LQ+ADDT+ S N++ +
Sbjct: 363 SPLMFYLVADALPEMLNKAKEAGHLQGLVPHLVPGGLTHLQYADDTILFMTNSEENIVTV 422
Query: 358 KSMLRCFELMSGLKVNFFKSKLAGVSVAEDVLLRYANLLHCKTTEIPFVYLGIHVGANPR 417
K +L C+E MSGLK+NF KS++ + V E R A+L +CK +P YLG+
Sbjct: 423 KFLLYCYEAMSGLKINFQKSEVIVLGVEEMEAQRVADLFNCKRGALPITYLGL------- 475
Query: 418 KKTTWDPLLSKLRKRLSLWKRKTL-SFGGKVCLIRSVLSSIPLFYLSFFKLPKGVAS-LC 475
P+ K + L W+ G + I + + + L +KL G S C
Sbjct: 476 ------PIKGKKKYHLIKWEALCRPKEDGGLGFIDTKIMNEALLCKWIYKLESGNDSPCC 529
Query: 476 NRIEKQFLWGG 486
N + K++L G
Sbjct: 530 NLLRKKYLGQG 540
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 279 bits (713), Expect = 3e-73
Identities = 172/528 (32%), Positives = 268/528 (50%), Gaps = 16/528 (3%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKM-KEFFEARF 59
QKSR +W+ GD NT FFH +++ R N + L+ + K K+ FFE F
Sbjct: 316 QKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLF 375
Query: 60 TN--ISGDGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFI 117
T+ I LEG + SE ++ + LE + AV+ + +PGPDG+ F
Sbjct: 376 TSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELE-VYNAVFSINKESAPGPDGFTALFF 434
Query: 118 KSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKI 177
+ W ++K I+ + F GV P++ N + I LIPK+ +P ++D PISL +YKI
Sbjct: 435 QQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKI 494
Query: 178 VSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKR---GFLVFKVD 234
+SK+LT RL K + I+ QSAF+ R + D++LVA+E+I + R + FK D
Sbjct: 495 ISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTD 554
Query: 235 YEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLG 294
K YD V W FL M+ LGF KWI WI C+ S S SVL+NG P + + G
Sbjct: 555 MSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQG 614
Query: 295 DPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNV 354
DPL+P LF++ E L ++ +A + G + + V V+ L FADDTL + + +
Sbjct: 615 DPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQEC 674
Query: 355 LAMKSMLRCFELMSGLKVNFFKS-----KLAGVSVAEDVLLRYANLLHCKTTEIPFVYLG 409
+ L + +SG +N KS K + + + + R L T + YLG
Sbjct: 675 EELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGK----YLG 730
Query: 410 IHVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPK 469
+ + K+ + + KL+ RL+ W KTLS GGK L++S+ ++P++ +S FKLPK
Sbjct: 731 LPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPK 790
Query: 470 GVASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEGSWESRT*SC 517
+ + F W + RKI W+ W ++ + +G + + C
Sbjct: 791 NLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQC 838
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 279 bits (713), Expect = 3e-73
Identities = 172/528 (32%), Positives = 268/528 (50%), Gaps = 16/528 (3%)
Query: 1 QKSRDRWVKDGDSNTKFFHNSINWRRRTNAIRGLVVDGGWVEDPKVVKSKM-KEFFEARF 59
QKSR +W+ GD NT FFH +++ R N + L+ + K K+ FFE F
Sbjct: 337 QKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLF 396
Query: 60 TN--ISGDGVLLEGTTFRSVSEEDNLALTRTFNLEEIRTAVWDCEGDKSPGPDGYNFHFI 117
T+ I LEG + SE ++ + LE + AV+ + +PGPDG+ F
Sbjct: 397 TSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELE-VYNAVFSINKESAPGPDGFTALFF 455
Query: 118 KSFWHVLKDDIVRVLEDFHTNGVWPKEGNSSFITLIPKVNNPMGLNDYIPISLIGCMYKI 177
+ W ++K I+ + F GV P++ N + I LIPK+ +P ++D PISL +YKI
Sbjct: 456 QQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKI 515
Query: 178 VSKVLTTRLSKVMGHIIDENQSAFLEGRQLLDSVLVANEVIDEAKVKKR---GFLVFKVD 234
+SK+LT RL K + I+ QSAF+ R + D++LVA+E+I + R + FK D
Sbjct: 516 ISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTD 575
Query: 235 YEKVYDSVNWNFLFYMLRRLGFYAKWIGWIKGCIQSASVSVLVNGSPTDEF*MEKRLMLG 294
K YD V W FL M+ LGF KWI WI C+ S S SVL+NG P + + G
Sbjct: 576 MSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQG 635
Query: 295 DPLAPFLFLIVAECLSGMMRQARRLNLYKGFKVGREGVEVSLLQFADDTLFIYEPSTHNV 354
DPL+P LF++ E L ++ +A + G + + V V+ L FADDTL + + +
Sbjct: 636 DPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQEC 695
Query: 355 LAMKSMLRCFELMSGLKVNFFKS-----KLAGVSVAEDVLLRYANLLHCKTTEIPFVYLG 409
+ L + +SG +N KS K + + + + R L T + YLG
Sbjct: 696 EELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGK----YLG 751
Query: 410 IHVGANPRKKTTWDPLLSKLRKRLSLWKRKTLSFGGKVCLIRSVLSSIPLFYLSFFKLPK 469
+ + K+ + + KL+ RL+ W KTLS GGK L++S+ ++P++ +S FKLPK
Sbjct: 752 LPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPK 811
Query: 470 GVASLCNRIEKQFLWGGEEGTRKIAWVKWSKVCRLRMEGSWESRT*SC 517
+ + F W + RKI W+ W ++ + +G + + C
Sbjct: 812 NLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQC 859
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.337 0.148 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,374,190,532
Number of Sequences: 2540612
Number of extensions: 56012601
Number of successful extensions: 151084
Number of sequences better than 10.0: 1064
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 295
Number of HSP's that attempted gapping in prelim test: 148452
Number of HSP's gapped (non-prelim): 1408
length of query: 839
length of database: 863,360,394
effective HSP length: 137
effective length of query: 702
effective length of database: 515,296,550
effective search space: 361738178100
effective search space used: 361738178100
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 80 (35.4 bits)
Lotus: description of TM0154.9