BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0147a.4
(354 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX96125.1| retrotransposon protein, putative, unclassified [... 180 7e-44
gb|AAO23078.1| polyprotein [Glycine max] 172 2e-41
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 171 3e-41
gb|AAD39272.1| Similar to retrotransposon polyprotein [Arabidops... 171 4e-41
gb|AAP54986.1| putative polyprotein [Oryza sativa (japonica cult... 169 1e-40
gb|AAP54661.1| putative plant disease resistance polyprotein [Or... 166 1e-39
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 166 1e-39
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 165 2e-39
ref|XP_475616.1| putative gag-pol polyprotein [Oryza sativa (jap... 165 2e-39
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 165 2e-39
gb|AAS55774.2| putative polyprotein [Oryza sativa (japonica cult... 165 2e-39
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 164 3e-39
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 164 5e-39
ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultiv... 163 6e-39
emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa (japonica cultiva... 163 6e-39
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 161 2e-38
emb|CAE05274.1| OSJNBb0014D23.8 [Oryza sativa (japonica cultivar... 161 3e-38
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 161 3e-38
gb|AAP44617.1| putative polyprotein [Oryza sativa (japonica cult... 160 4e-38
gb|AAS07071.1| putative integrase, 3'-partial [Oryza sativa (jap... 160 4e-38
>gb|AAX96125.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1448
Score = 180 bits (456), Expect = 7e-44
Identities = 104/252 (41%), Positives = 145/252 (57%), Gaps = 12/252 (4%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P+ W+ + MD I GLPKS+ I+VVVD+L+++AHFLPL H FSA++VA +++ + +
Sbjct: 1032 PSGAWQTVTMDFIEGLPKSRRFNCIMVVVDKLSRYAHFLPLAHPFSAADVAQLYMEGVFK 1091
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P +VSDHD F F E L Q T+L S+AYHPQTDGQTE VN+CLE YLR
Sbjct: 1092 LHGLPLAVVSDHDKIFTSNFWEQLFQSVSTKLHMSTAYHPQTDGQTERVNQCLETYLRCF 1151
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSLLKGLSYHQGWKR*IS*Y 182
+CP WS L AE+W+NT Y+++ +PF L G P L G+S + + +
Sbjct: 1152 THSCPSKWSTWLYLAEYWYNTTYHSTLEQTPFEVLYGHTPNQL--GISVNSCELPDVQQW 1209
Query: 183 VVEMSCWLI*GKIC*HDAFFC**A*A-------RCGVCSW*LVFLKLQPYFRRCLARRIN 235
+ E + + H A A V W V+LKLQPY + +A R N
Sbjct: 1210 LSERRLMMQLLQQHLHQAQQYMKTPADKKRSFRSFAVGDW--VYLKLQPYVQSSVAARAN 1267
Query: 236 EKLSPRFYGPLQ 247
KLS +++GP +
Sbjct: 1268 HKLSFKYFGPYE 1279
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 172 bits (435), Expect = 2e-41
Identities = 84/165 (50%), Positives = 111/165 (66%), Gaps = 1/165 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P VWE++ MD I GLP S G I+VV+DRLTK+AHF+PL +++ VA F+ I++
Sbjct: 1139 PQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVK 1198
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P +IVSD D F F + L + GT L SSAYHPQ+DGQ+EV+N+CLE YLR
Sbjct: 1199 LHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCF 1258
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSLLK 167
+ PK W L WAEFW+NT Y+ S M+PF AL G++P +L +
Sbjct: 1259 TYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTR 1303
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 171 bits (433), Expect = 3e-41
Identities = 81/165 (49%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P +W ++ +D + GLP S ILVVVDRL+K++HF+PL H F+A V FI+++++
Sbjct: 1264 PQQIWSDVSLDFVEGLPSSNRFNCILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVK 1323
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHGFP+T+VSD D F F L + GT L+ S+AYHPQTDGQTEVVNRCLE+YLR
Sbjct: 1324 LHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCF 1383
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSLLK 167
P +W L WAE+W+NT+Y+++ +PF A+ G++P LL+
Sbjct: 1384 AGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPPVLLR 1428
Score = 37.7 bits (86), Expect = 0.53
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 218 VFLKLQPYFRRCLARRINEKLSPRFYGPLQ 247
V+LKL+PY + +A R NEKLS R++GP +
Sbjct: 1483 VYLKLRPYRQSSVAHRKNEKLSQRYFGPFK 1512
>gb|AAD39272.1| Similar to retrotransposon polyprotein [Arabidopsis thaliana]
gi|25405116|pir||H96498 hypothetical protein T10P12.3
[imported] - Arabidopsis thaliana
Length = 1264
Score = 171 bits (432), Expect = 4e-41
Identities = 108/253 (42%), Positives = 146/253 (57%), Gaps = 9/253 (3%)
Query: 6 TVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIRLH 65
TVWE+I +D I GLP S G ILVVVDRL+K +FL L HLF A +VA F+ E+++L+
Sbjct: 845 TVWEDISVDFIEGLPTSGGVNVILVVVDRLSKAVYFLGLKHLFKAIDVANKFVSEVVKLY 904
Query: 66 GFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRLIW 124
GFP +IVSD D F + + + +GTQLK S++Y PQTDGQTEV+NRCLE YLR
Sbjct: 905 GFPKSIVSDRDRIFLGAVWKDMFKLSGTQLKHSTSYRPQTDGQTEVLNRCLETYLRCFTS 964
Query: 125 TCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSLLK-GLSYHQGWKR*IS*YV 183
+ P+ W LAW EF FNT Y+++ SPF + G+DP SL++ L W +
Sbjct: 965 SHPRAWHKYLAWVEFSFNTAYHSALKTSPFKVVYGRDPPSLVRFELGSTDNWDLEVQLKE 1024
Query: 184 VEMSCWLI*GKIC*HDAFFC**A*AR-----CGVCSW*LVFLKLQPYFRRCLARRINEKL 238
++ I + A + V W V LKLQPY +R + RR KL
Sbjct: 1025 RDLMLEHIRANLQRAQEIMKRNADMKRRDVVFAVGDW--VHLKLQPYRQRTVVRRPCYKL 1082
Query: 239 SPRFYGPLQG*ER 251
+ +F+GP + ER
Sbjct: 1083 AAKFFGPFEIVER 1095
>gb|AAP54986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536794|ref|NP_922699.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|14165316|gb|AAK55448.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1409
Score = 169 bits (428), Expect = 1e-40
Identities = 83/160 (51%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W +I MD I GLPKSKGK+ ILVVVDRLTK+AHFL L H +S +V F+ I +
Sbjct: 1155 PDMAWTHITMDFIEGLPKSKGKDVILVVVDRLTKYAHFLALTHPYSVEQVVEVFMDNIHK 1214
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P I++D D F + + + QL+FS+AYHPQTDGQTE VN+CLE+YLR +
Sbjct: 1215 LHGMPMAIITDRDRIFTSQLFQEVFKAMKVQLRFSTAYHPQTDGQTERVNQCLESYLRSM 1274
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ P W + LA AE+W+NT Y+TS M+PF A+ G P
Sbjct: 1275 AFQEPHQWYSWLALAEWWYNTTYHTSLQMTPFQAMYGYPP 1314
>gb|AAP54661.1| putative plant disease resistance polyprotein [Oryza sativa
(japonica cultivar-group)] gi|37536144|ref|NP_922374.1|
putative plant disease resistance polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|10122041|gb|AAG13430.1| putative plant disease
resistance polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 921
Score = 166 bits (420), Expect = 1e-39
Identities = 85/160 (53%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W++I MD I GLP+S G ILVVVDR TK+A+F+PLCH F+AS+VA + + +
Sbjct: 546 PKEAWQDISMDFIEGLPRSDGYNAILVVVDRFTKYANFIPLCHPFTASQVAHLVDKTVFK 605
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
HG P +IVSD D F F L TQL+ S+AYHPQ DGQTE VN+CLE YLR +
Sbjct: 606 THGIPRSIVSDRDRLFTSKFWTTLFATWDTQLQMSTAYHPQIDGQTERVNQCLEMYLRCM 665
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
PK WS+ + AEFW+NTNY+TS SP AL G DP
Sbjct: 666 TQANPKKWSHWIHLAEFWYNTNYHTSLGCSPHKALFGVDP 705
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 166 bits (420), Expect = 1e-39
Identities = 82/160 (51%), Positives = 109/160 (67%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W +I MD I GLPKS+GK+ ILVVVDRLTK+AHFL L H ++ +V F+ I +
Sbjct: 1259 PDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPYTVEQVVQIFMDNIHK 1318
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P IV+D D F F + + + +L+FS+A+HPQTDGQTE VN+CLE+YLR +
Sbjct: 1319 LHGMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQTERVNQCLESYLRSM 1378
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ P+ W + LA AE+W+NT Y+TS M+PF AL G P
Sbjct: 1379 TFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPP 1418
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 165 bits (418), Expect = 2e-39
Identities = 83/160 (51%), Positives = 105/160 (64%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P T+W + MD I GLP S GK I+VVVDRL+K AHF+ L H +SA VA ++ + +
Sbjct: 1149 PDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFK 1208
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P++IVSD D F F G LK +SAYHPQ+DGQTEVVNRCLE YLR +
Sbjct: 1209 LHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCM 1268
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
P+ WS LA AE+W+NTNY++S M+PF + GQ P
Sbjct: 1269 CHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVP 1308
Score = 38.1 bits (87), Expect = 0.40
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 218 VFLKLQPYFRRCLARRINEKLSPRFYGP 245
V++KLQPY ++ + R N+KLSP+++GP
Sbjct: 1368 VYVKLQPYRQQSVVMRANQKLSPKYFGP 1395
>ref|XP_475616.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1377
Score = 165 bits (417), Expect = 2e-39
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 1 IRPPTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQE 60
++ P W+ I MD I GLP+S +ILV+VD+ TKFAHFLPL H F+A VA F+
Sbjct: 1087 VQIPEHAWQVISMDFIEGLPRSASYNSILVIVDKFTKFAHFLPLSHPFTAVSVAQLFMDR 1146
Query: 61 IIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYL 119
I +HG P I+SD D F F + L + +GTQL+ SS+YHPQTDGQTE VN+CLE +L
Sbjct: 1147 IHSIHGLPQAIISDRDRVFTSIFWKELFRRSGTQLQMSSSYHPQTDGQTERVNQCLEMFL 1206
Query: 120 RRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
R + CP WS L+ A+FW+NT+++++ ++PF A+ G P
Sbjct: 1207 RCFVHACPSRWSKWLSLAQFWYNTSFHSTLMLTPFEAMFGHKP 1249
Score = 39.3 bits (90), Expect = 0.18
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 218 VFLKLQPYFRRCLARRINEKLSPRFYGPLQ 247
VF+KLQPY ++ + R N+KL+ +FYGP Q
Sbjct: 1309 VFMKLQPYVQQSVMTRANQKLAFKFYGPFQ 1338
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 165 bits (417), Expect = 2e-39
Identities = 79/160 (49%), Positives = 106/160 (65%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W +I MD + GLPKS GK+ ILVVVDRLTK+AHF+ + H ++ +V F+ I R
Sbjct: 1234 PDMAWAHITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTVEQVVELFMNNIHR 1293
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P I++D D F + + + +LKFS++YHPQTDGQTE VN+CLE+YLR +
Sbjct: 1294 LHGMPMAIITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTERVNQCLESYLRSM 1353
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ P W + LA AE+W+NT Y+TS M+PF AL G P
Sbjct: 1354 TFQEPTRWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPP 1393
>gb|AAS55774.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2108
Score = 165 bits (417), Expect = 2e-39
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 1 IRPPTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQE 60
++ P W+ I MD I GLP+S +ILV+VD+ TKFAHFLPL H F+A VA F+
Sbjct: 1818 VQIPEHAWQVISMDFIEGLPRSASYNSILVIVDKFTKFAHFLPLSHPFTAVSVAQLFMDR 1877
Query: 61 IIRLHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYL 119
I +HG P I+SD D F F + L + +GTQL+ SS+YHPQTDGQTE VN+CLE +L
Sbjct: 1878 IHSIHGLPQAIISDRDRVFTSIFWKELFRRSGTQLQMSSSYHPQTDGQTERVNQCLEMFL 1937
Query: 120 RRLIWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
R + CP WS L+ A+FW+NT+++++ ++PF A+ G P
Sbjct: 1938 RCFVHACPSRWSKWLSLAQFWYNTSFHSTLMLTPFEAMFGHKP 1980
Score = 39.3 bits (90), Expect = 0.18
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 218 VFLKLQPYFRRCLARRINEKLSPRFYGPLQ 247
VF+KLQPY ++ + R N+KL+ +FYGP Q
Sbjct: 2040 VFMKLQPYVQQSVMTRANQKLAFKFYGPFQ 2069
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 164 bits (416), Expect = 3e-39
Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 2/169 (1%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W++I MD I GLP SKG TILVVVDR TK+AHFL L H FSAS+VA F+ + +
Sbjct: 1145 PEGSWQDISMDFIEGLPLSKGANTILVVVDRFTKYAHFLSLKHPFSASQVAELFLDRVAQ 1204
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
L+G P +IVSD D F F + L G L S+AYHPQ+DGQTE VN+CLE YLR
Sbjct: 1205 LYGMPKSIVSDRDRVFTSSFWKTLFARFGIPLNMSTAYHPQSDGQTERVNQCLEMYLRCA 1264
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP-LSLLKGLS 170
+ P W++ L A+FW+NT+++TS SP AL G DP LL LS
Sbjct: 1265 VANTPSKWASWLPLAQFWYNTSFHTSLKCSPHKALYGSDPSYGLLPSLS 1313
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 164 bits (414), Expect = 5e-39
Identities = 77/160 (48%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W+ + +D + GLPKS ILVVVD+ +K++HF+PL H FSA +VA ++Q I R
Sbjct: 1229 PDHAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIHR 1288
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P +++SD D F L + AGTQL+ SS+YHPQTDGQTE VN+CLE +LR
Sbjct: 1289 LHGLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCF 1348
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ CP WS LA AE+W+NT+++++ +PF L G P
Sbjct: 1349 VHACPSQWSRWLALAEYWYNTSFHSALGTTPFEVLYGHKP 1388
Score = 39.3 bits (90), Expect = 0.18
Identities = 17/30 (56%), Positives = 22/30 (72%)
Query: 218 VFLKLQPYFRRCLARRINEKLSPRFYGPLQ 247
V+LKLQP+ ++ + R N KLS RFYGP Q
Sbjct: 1448 VYLKLQPFVQQSVVTRANRKLSFRFYGPFQ 1477
>ref|XP_474255.1| OSJNBa0087O24.13 [Oryza sativa (japonica cultivar-group)]
gi|32488663|emb|CAE03590.1| OSJNBa0087O24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1311
Score = 163 bits (413), Expect = 6e-39
Identities = 78/160 (48%), Positives = 108/160 (66%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W +I MD I GLPKS K+ I V+VDR TK+AHF+ L H F+A ++ F++ +
Sbjct: 959 PEMAWTHISMDFIEGLPKSDNKDVIWVIVDRFTKYAHFVALSHPFTADQIVTQFVENYYK 1018
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
HG P+ IVSD D F + + + AG +L FSSAYHPQTDGQTE VN+CLE YLR +
Sbjct: 1019 HHGLPAVIVSDRDRIFTSQTWKDVFEKAGVKLHFSSAYHPQTDGQTERVNQCLENYLRCM 1078
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+T PK W + LA+A++W+NT+++T+ M+P+ AL G P
Sbjct: 1079 TFTKPKKWKSLLAYAKWWYNTSFHTTLGMTPYQALHGVPP 1118
>emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa (japonica cultivar-group)]
gi|50923859|ref|XP_472290.1| OSJNBa0053B21.10 [Oryza
sativa (japonica cultivar-group)]
Length = 582
Score = 163 bits (413), Expect = 6e-39
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P+ VW +I MD + GLP+ GK IL VVDR +KFAHF+P+ H ++A+ VAA F EI+R
Sbjct: 196 PSAVWADIAMDFVEGLPRVHGKTVILTVVDRFSKFAHFIPMAHPYTATSVAAAFFSEIVR 255
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P++IVSD D F F L + AG +L SSA+HPQ+DGQ+EV N+ + YLR L
Sbjct: 256 LHGVPASIVSDRDPVFTSTFWRELFRLAGVRLNLSSAFHPQSDGQSEVTNKIIAMYLRCL 315
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSL 165
P++W L WAE+ +NT+Y +S SPF + G++P +L
Sbjct: 316 TGDRPRHWLRWLPWAEYCYNTSYQSSLRTSPFRVVYGREPPTL 358
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 161 bits (408), Expect = 2e-38
Identities = 80/163 (49%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P+ VW +I MD + GLP+ GK IL VVDR +KFAHF+PL H ++A+ VAA F +I+R
Sbjct: 1115 PSAVWADIAMDFVEGLPRVHGKTVILTVVDRFSKFAHFIPLSHPYTATTVAAAFFGDIVR 1174
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG PS+IVSD D F F L + AG QL +SA+HPQ+DGQ+EV N+ + YLR L
Sbjct: 1175 LHGVPSSIVSDRDPVFTSKFWTELFRLAGVQLNLTSAFHPQSDGQSEVTNKIIAMYLRCL 1234
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSL 165
P+ W L WAE+ +NT+Y S +PF+ + G+ P SL
Sbjct: 1235 TGDRPRQWLRWLPWAEYCYNTSYQASLRTTPFHVVYGRSPPSL 1277
>emb|CAE05274.1| OSJNBb0014D23.8 [Oryza sativa (japonica cultivar-group)]
gi|50923985|ref|XP_472353.1| OSJNBb0014D23.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1545
Score = 161 bits (407), Expect = 3e-38
Identities = 103/265 (38%), Positives = 138/265 (51%), Gaps = 38/265 (14%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W+ + MD I GLPKS +I VVVD+ +K++HF+PL H FSA +VA F+ I +
Sbjct: 632 PEGAWQVLTMDFIEGLPKSGKFNSIFVVVDKFSKYSHFIPLSHPFSAIDVAQAFMCNIYK 691
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P I+SD D F F E L +GTQL+ ++AYHPQTDGQTE VN+CLE YLR
Sbjct: 692 LHGLPRFIISDRDRIFTSQFWEQLFPRSGTQLQLTTAYHPQTDGQTERVNQCLEIYLRCF 751
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDPLSLLKGLSYHQGWKR*IS*Y 182
+ P WS+ L AEFWFNT+Y+++ S P +L G R S
Sbjct: 752 VHAMPSKWSSWLYLAEFWFNTSYHSTLFKS---------PFEVLYGYPPGHFGIREDSCS 802
Query: 183 VVEMSCWLI*GKIC*H--------------------DAFFC**A*ARCGVCSW*LVFLKL 222
+ ++ WL K+ +F V W V+LKL
Sbjct: 803 IPDLHAWLSERKLMTQLLKQHLIRAQQQMKVYADKKRSF------REFVVGDW--VYLKL 854
Query: 223 QPYFRRCLARRINEKLSPRFYGPLQ 247
QPY + +ARR N KL +++GP Q
Sbjct: 855 QPYIQSSVARRANHKLCFKYFGPFQ 879
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 161 bits (407), Expect = 3e-38
Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 4 PTTVWENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIR 63
P W +I MD I GLPKS+GK+ ILVVVDRLTK+AHF+ L H + +V F+ I +
Sbjct: 1123 PDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIALAHPYDVEQVVEAFMNNIHK 1182
Query: 64 LHGFPSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRL 122
LHG P I++D D F + + + +L+FS+AYHPQ DGQTE VN+CLE+YLR +
Sbjct: 1183 LHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQMDGQTERVNQCLESYLRNM 1242
Query: 123 IWTCPKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
+ P W + LA AE+W+NT ++T+ M+PF A+ G P
Sbjct: 1243 TFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSP 1282
>gb|AAP44617.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50916615|ref|XP_468704.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 627
Score = 160 bits (406), Expect = 4e-38
Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 8 WENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIRLHGF 67
W +I MD I GLPKS GK+ ILVVVDRLTK+ HF+ + H +S +V F+ I +L+G
Sbjct: 3 WTHISMDFIEGLPKSHGKDVILVVVDRLTKYVHFVAMSHPYSVEQVVEVFMNNIHKLYGM 62
Query: 68 PSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRLIWTC 126
P IV+D D F F + + + L+FS+AYHPQTDGQT+ VN+CLE+YLR + +
Sbjct: 63 PMAIVTDRDRIFTSQFFQEVFKAMKVHLRFSTAYHPQTDGQTKRVNQCLESYLRNMTFKE 122
Query: 127 PKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
P++W + LA AE+W+NT Y+TS M+PF AL G P
Sbjct: 123 PQHWYSWLALAEWWYNTTYHTSLQMTPFQALYGYPP 158
>gb|AAS07071.1| putative integrase, 3'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 303
Score = 160 bits (406), Expect = 4e-38
Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 8 WENIYMDSIGGLPKSKGKETILVVVDRLTKFAHFLPLCHLFSASEVAAGFIQEIIRLHGF 67
W +I MD I GLPKS GK+ ILVVVDRLTK+ HF+ + H +S +V F+ I +L+G
Sbjct: 3 WTHISMDFIEGLPKSHGKDVILVVVDRLTKYVHFVAMSHPYSVEQVVEVFMNNIHKLYGM 62
Query: 68 PSTIVSDHDS-FPE*FLEVLIQGAGTQLKFSSAYHPQTDGQTEVVNRCLEAYLRRLIWTC 126
P IV+D D F F + + + L+FS+AYHPQTDGQT+ VN+CLE+YLR + +
Sbjct: 63 PMAIVTDRDRIFTSQFFQEVFKAMKVHLRFSTAYHPQTDGQTKRVNQCLESYLRNMTFKE 122
Query: 127 PKNWSNCLAWAEFWFNTNYNTSRNMSPFNALSGQDP 162
P++W + LA AE+W+NT Y+TS M+PF AL G P
Sbjct: 123 PQHWYSWLALAEWWYNTTYHTSLQMTPFQALYGYPP 158
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.349 0.154 0.574
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,975,161
Number of Sequences: 2540612
Number of extensions: 22049940
Number of successful extensions: 75529
Number of sequences better than 10.0: 1531
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 645
Number of HSP's that attempted gapping in prelim test: 72575
Number of HSP's gapped (non-prelim): 2099
length of query: 354
length of database: 863,360,394
effective HSP length: 129
effective length of query: 225
effective length of database: 535,621,446
effective search space: 120514825350
effective search space used: 120514825350
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0147a.4