BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0140.2
         (123 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAF96856.1| unnamed protein product [Tetraodon nigroviridis]       34  0.93
gb|EAL30674.1| GA11551-PA [Drosophila pseudoobscura]                   33  1.6
emb|CAA05038.1| 4-Hydroxybenzoyl-CoA reductase alpha-subunit [Th...    32  2.7
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase ...    32  2.7
emb|CAH17325.1| hypothetical protein [Legionella pneumophila str...    32  4.6
emb|CAC28855.1| conserved hypothetical protein [Neurospora crass...    32  4.6
ref|XP_316619.2| ENSANGP00000002585 [Anopheles gambiae str. PEST...    31  6.0

>emb|CAF96856.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 909

 Score = 33.9 bits (76), Expect = 0.93
 Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 1/47 (2%)

Query: 52  CVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEP-PKTALHNV 97
           C+  + +  P Q H SC P   RAP   P K  V P+P P+   H++
Sbjct: 187 CIKHMINVDPKQGHLSCSPLPTRAPSPTPRKDTVSPQPHPQPHSHSL 233


>gb|EAL30674.1| GA11551-PA [Drosophila pseudoobscura]
          Length = 824

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 48  PRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHNVTLLQHLRNTT 107
           PR   +     TP + H  SC PT  R     P  RG  P PP +   + +  Q LR +T
Sbjct: 649 PRAAQITASQLTPTTSHASSCTPTRMRGT---PRGRGELPTPPASTHSSASPYQILRAST 705

Query: 108 QS 109
            +
Sbjct: 706 DT 707


>emb|CAA05038.1| 4-Hydroxybenzoyl-CoA reductase alpha-subunit [Thauera aromatica]
           gi|13431532|sp|O33819|HCRA_THAAR 4-hydroxybenzoyl-CoA
           reductase alpha subunit
          Length = 769

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 23/77 (29%), Positives = 32/77 (40%), Gaps = 5/77 (6%)

Query: 45  NLMPRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHNVTLLQHLR 104
           N++P+ P V M A    S     C   V  A GW  E++G  P+     +     L H  
Sbjct: 391 NMLPQIPYVTMYAQRVMSYGVPECLEKVKAASGW-EERKGKLPKGRGLGI----ALSHFV 445

Query: 105 NTTQSDIHRTGSSDTTV 121
           + T +  H TG    TV
Sbjct: 446 SGTSTPKHWTGEPHATV 462


>pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
           Aromatica gi|58176705|pdb|1SB3|A Chain A, Structure Of
           4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica
           gi|58176617|pdb|1RM6|D Chain D, Structure Of
           4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica
           gi|58176614|pdb|1RM6|A Chain A, Structure Of
           4-Hydroxybenzoyl-Coa Reductase From Thauera Aromatica
          Length = 769

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 23/77 (29%), Positives = 32/77 (40%), Gaps = 5/77 (6%)

Query: 45  NLMPRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHNVTLLQHLR 104
           N++P+ P V M A    S     C   V  A GW  E++G  P+     +     L H  
Sbjct: 391 NMLPQIPYVTMYAQRVMSYGVPECLEKVKAASGW-EERKGKLPKGRGLGI----ALSHFV 445

Query: 105 NTTQSDIHRTGSSDTTV 121
           + T +  H TG    TV
Sbjct: 446 SGTSTPKHWTGEPHATV 462


>emb|CAH17325.1| hypothetical protein [Legionella pneumophila str. Lens]
           gi|54292913|ref|YP_122300.1| hypothetical protein
           plpl0006 [Legionella pneumophila str. Lens]
          Length = 387

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 25/84 (29%), Positives = 35/84 (40%), Gaps = 16/84 (19%)

Query: 16  YLASMSTNARTLSPHILHLYQPMLVCHLDNLMPRTPCVIMIASTPPS----QHHHSCKPT 71
           Y+  + TNAR     +  LYQ      L+ ++    C I+    PPS    + H  C   
Sbjct: 263 YIQFIETNARPPGIGLNKLYQRKYSISLETIL----CCIVCGVEPPSMVENKSHFVC--- 315

Query: 72  VNRAPGWFPEKRGVFPEPPKTALH 95
                G+FP K GV  +  K  LH
Sbjct: 316 -----GYFPTKMGVIKKINKPELH 334


>emb|CAC28855.1| conserved hypothetical protein [Neurospora crassa]
           gi|32404802|ref|XP_323014.1| hypothetical protein
           [Neurospora crassa] gi|28923034|gb|EAA32252.1|
           hypothetical protein [Neurospora crassa]
          Length = 479

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 24/95 (25%), Positives = 38/95 (39%), Gaps = 28/95 (29%)

Query: 37  PMLV-CHLDNLMPRTPCVIMIASTPPS----------QHHHSCKPTVNRAPGWFPEKRGV 85
           P++V CH    +      +++  TPPS          QHHHS +   + +  +F  K+ V
Sbjct: 65  PVIVPCHSQMTLDDFAAALLVPVTPPSSPLPNNSNNPQHHHSHRSVPSGSGSYFSSKQNV 124

Query: 86  -----------------FPEPPKTALHNVTLLQHL 103
                              +PP T + NV L Q+L
Sbjct: 125 PGSSSSAHPPPPSQQQQQQQPPATQIANVVLAQNL 159


>ref|XP_316619.2| ENSANGP00000002585 [Anopheles gambiae str. PEST]
           gi|55239345|gb|EAA11397.2| ENSANGP00000002585 [Anopheles
           gambiae str. PEST]
          Length = 880

 Score = 31.2 bits (69), Expect = 6.0
 Identities = 15/47 (31%), Positives = 20/47 (41%)

Query: 30  HILHLYQPMLVCHLDNLMPRTPCVIMIASTPPSQHHHSCKPTVNRAP 76
           H++ LY P +V       P  P    +    PS  HH+   TV R P
Sbjct: 211 HVMGLYLPAMVRSTPTPSPSPPAPATVGGHVPSAKHHALHQTVLREP 257


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.320    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,351,193
Number of Sequences: 2540612
Number of extensions: 8709483
Number of successful extensions: 18948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18944
Number of HSP's gapped (non-prelim): 8
length of query: 123
length of database: 863,360,394
effective HSP length: 99
effective length of query: 24
effective length of database: 611,839,806
effective search space: 14684155344
effective search space used: 14684155344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)