BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.9
(1610 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 636 e-180
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 634 e-180
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 633 e-179
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 626 e-177
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 623 e-176
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 622 e-176
gb|AAL66759.1| putative pol protein [Zea mays] 620 e-175
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 617 e-175
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 616 e-174
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 616 e-174
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 616 e-174
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 616 e-174
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 616 e-174
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 613 e-173
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 613 e-173
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 612 e-173
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 611 e-173
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 610 e-173
emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa (japonica cultiva... 609 e-172
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 608 e-172
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 636 bits (1641), Expect = e-180
Identities = 322/583 (55%), Positives = 414/583 (70%), Gaps = 17/583 (2%)
Query: 1038 EEVEPEEDEPEEEAGPSNSQTLKKSR------------ITAAHPKELILGNKDEPVRTRS 1085
+EV+P +D+ ++ G +N Q + I HP + ILG+ + V TRS
Sbjct: 1307 QEVKPPQDKSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRS 1366
Query: 1086 AFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVH 1145
E VS IEP ++EALQD DW++AM+EELN F++N+VW LV +P N +
Sbjct: 1367 RVAHFCEHY----SFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQN 1421
Query: 1146 VIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVN 1205
V+GTKWVFRNK +E G V RNKARLVA+GYSQ EG+D+ ET+APVARLE+IR+L++++
Sbjct: 1422 VVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLESIRILLAYATY 1481
Query: 1206 HNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 1265
H L+QMDVKSAFLNG I EEVYV QPPGFED + P+HV++L K+LYGLKQAPRAWYE
Sbjct: 1482 HGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYEC 1541
Query: 1266 LSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFE 1325
L FL+ N F GK D TLF KT ++D+ + QIYVDDIIFGS N+S C+EFS +M +FE
Sbjct: 1542 LRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFE 1601
Query: 1326 MSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDK 1385
MSMMGELKYFLG QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+ +
Sbjct: 1602 MSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTG 1661
Query: 1386 SGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTN 1445
V QK+YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T
Sbjct: 1662 GKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPK 1721
Query: 1446 LGLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 1505
GL Y + + L GY DAD+AG + RKSTSG CQFLG +LVSWASK+Q+++ALSTAEA
Sbjct: 1722 FGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEA 1781
Query: 1506 EYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHF 1565
EYI+A C Q+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI ++YHF
Sbjct: 1782 EYIAAGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHF 1841
Query: 1566 IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+RD+ QKG + + +++T Q ADIFTKPL E F + LN+
Sbjct: 1842 LRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1884
Score = 116 bits (290), Expect = 7e-24
Identities = 117/500 (23%), Positives = 211/500 (41%), Gaps = 70/500 (14%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQKKLY 70
KPP F+G+ + W + + +WD++ G + P D T E ++
Sbjct: 132 KPPTFNGEDYAMWSNLMRFHLTSLHKRIWDVVEYGVQVPSIGD-----EDYDTDEVAQIE 186
Query: 71 SQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESF 130
+ +A ILL+++S EEY K+ + AK I+D LK +HEG++ K +K ++ + F
Sbjct: 187 HFNSQAATILLASLSKEEYNKVQGLKNAKEIWDLLKTAHEGDELTKITKRETIEGELGRF 246
Query: 131 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELTRDVE 190
+ E ++M++R + LV +R L + V++VI P T ++L R
Sbjct: 247 HLRQGEEPQDMYNRLKTLVNQVRNLGSTKWDDHEVVKVILRALIFLNP--TQVQLIRGNP 304
Query: 191 N---MSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKALQAEEEESEEAS 247
M+ EE+I E + + + S+++ + ++ + E S +
Sbjct: 305 RYPLMTPEEVIGNFVSFECMIKGSKKINELDEPSTSEAQPVAFKATEEKKEESTPSRQPI 364
Query: 248 EDS--GEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCFECKESG 305
+ S +E+ LI K +I K R KGK KK C++C + G
Sbjct: 365 DASKLDNEEMALIIKSFRQILKQR----------KGKDYKPRSKK------VCYKCGKPG 408
Query: 306 HYKSDCP----------KLKKDKKPKKHFKTK---KSLMVTFDESESEDVDSDGEVQGLM 352
H+ + CP K + K+ K+++K K + +D ES SD E +
Sbjct: 409 HFIAKCPMSSDSDRGDDKKGRRKEKKRYYKKKGGDAHVCREWDSDESSSDSSDDEDAANI 468
Query: 353 AIVKD-------------KGAESKEAVDSDSESEGDPDSDDENE------VFASFSTSEL 393
A+ K K + K S ++ E D DD+NE +FA+ + +
Sbjct: 469 AVTKGLLFPNVGHKCLMAKDGKKKVKSKSSTKYETSSDEDDKNEEDNLRILFANLNMEQK 528
Query: 394 K---------HALSDIMDKYNS-LLSKHKKLKKNLSAVSKTPSEHEKIISDLKNDNHALV 443
+ H D++D L+ ++KK K +A + + EK+ S+L + L
Sbjct: 529 EKLNELISAIHEKDDLLDSQEDFLIKENKKHVKVKNAYALEREKCEKLSSELSTCHEILD 588
Query: 444 NSNSVLKNQIAKLEEVIACD 463
N + N +AK++ + D
Sbjct: 589 NLRNENANLLAKVDSHVCID 608
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 634 bits (1636), Expect = e-180
Identities = 322/579 (55%), Positives = 411/579 (70%), Gaps = 16/579 (2%)
Query: 1041 EPEEDEPEEEAGPSNSQTLKKSR-----------ITAAHPKELILGNKDEPVRTRSAFRP 1089
EP +D+ ++ G +N Q + I HP + ILG+ + V TRS
Sbjct: 1179 EPPQDDGIDQGGDANDQDKEDEEQRPPHPRVHQAIQQDHPVDTILGDIHKGVTTRSRVAH 1238
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
E VS IEP ++EALQD DW++AM+EELN F++N+VW LV +P N +V+GT
Sbjct: 1239 FCEHY----SFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGT 1293
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
KWVFRNK +E G V RNKARLVA+GYSQ EG+D+ ET+APVARLE+IR+L++++ H
Sbjct: 1294 KWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFK 1353
Query: 1210 LHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
L+QMDVKSAFLNG I EEVYV QPPGFED + P+HV+KL K+LYGLKQAPRAWYE L F
Sbjct: 1354 LYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYKLSKALYGLKQAPRAWYECLRDF 1413
Query: 1270 LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM 1329
L+ N F GK D TLF KT ++D+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMM
Sbjct: 1414 LIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMM 1473
Query: 1330 GELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKV 1389
GELKYFLG QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+ + V
Sbjct: 1474 GELKYFLGFQVKQLQEGTFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSV 1533
Query: 1390 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1449
QK+YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL
Sbjct: 1534 DQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLW 1593
Query: 1450 YKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1509
Y + + L GY DAD+AG + RKSTSG CQFLG +LVSWASK+Q+++ALSTAEAEYI+
Sbjct: 1594 YPRGSTFDLLGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIA 1653
Query: 1510 AAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1569
A C Q+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI ++YHF+RD+
Sbjct: 1654 AGHCCAQLLWMRQTLRDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHFLRDH 1713
Query: 1570 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
QKG + + +++T Q ADIFTKPL E F + LN+
Sbjct: 1714 QQKGDIEISYINTKDQLADIFTKPLDEQTFTKLRHELNI 1752
Score = 95.9 bits (237), Expect = 1e-17
Identities = 110/457 (24%), Positives = 195/457 (42%), Gaps = 83/457 (18%)
Query: 55 KKIPRSEMTAEQKKLYSQHHKARA--ILLSAISYEEYQKITDREFAKGIFDSLKMSHEGN 112
+K R E E + +H ++A ILL+++S EEY K+ + AK I+D LK +HEG+
Sbjct: 104 RKKYRDENYDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAHEGD 163
Query: 113 KKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCL 172
+ K +K ++ + F + E + M++R + LV +R L +++VI L
Sbjct: 164 ELTKITKRETIEGELGRFRLRKGEEPQHMYNRLKTLVNQVRNLGSVKWDDHEMVKVI--L 221
Query: 173 PESWMPLVTSIELTRD---VENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAK 229
T ++L R M+ EE+I E + + + A S+++
Sbjct: 222 RSLIFLNPTQVQLIRGNPRYTKMTPEEVIGNFVSFECMIEGSRKINELDDATTSEAQPV- 280
Query: 230 VEKSKALQAEEEESEEASEDS--------GEDELTLISKRLNRIWKHRQSKFKGSGKAKG 281
A +A EE+ EEA+ +E+ L+ K +I K R+ K
Sbjct: 281 -----AFKATEEKKEEATPSRQPIDASKLDNEEMALVIKSFRQILKQRRGK--------- 326
Query: 282 KYESSGQKKSSIREVTCFECKESGHYKSDCP----------KLKKDKKPKKHFKTK---K 328
Y+S +K C++C + GH+ + CP K + K+ KK++K K
Sbjct: 327 DYKSRSKK-------VCYKCGKPGHFIAKCPISSDSDRGDDKKGRRKEKKKYYKKKGGDA 379
Query: 329 SLMVTFDESESEDVDSDGEVQGLMAIVK-----------------DKGAESKEAVDSDSE 371
+ +D +S SD E +A+ K K +SK + +S
Sbjct: 380 HVCREWDSDDSSSDSSDDEDAANIAVTKGLLFPNVGHKCLMAKDGKKKVKSKSSTKYESS 439
Query: 372 SEGDPDSDDEN--EVFASFSTSELK---------HALSDIMDKYNSLLSK-HKKLKKNLS 419
S+ + +++N +FA+ + ++ + H D++D LL K +KK K +
Sbjct: 440 SDDNASDEEDNLRSLFANLNIAQKEKLNELVSAIHEKDDLLDSQEDLLIKENKKHVKVKN 499
Query: 420 AVSKTPSEHEKIISDLKNDNHALVNSNSVLKNQIAKL 456
A S + EK+ S+L + N L+N+ A L
Sbjct: 500 AYSLQVEKCEKLSSELSTCREMIDN----LRNENASL 532
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 633 bits (1633), Expect = e-179
Identities = 322/583 (55%), Positives = 413/583 (70%), Gaps = 17/583 (2%)
Query: 1038 EEVEPEEDEPEEEAGPSNSQTLKKSR------------ITAAHPKELILGNKDEPVRTRS 1085
+E EP +D+ ++ G +N Q + I HP + ILG+ + V TRS
Sbjct: 478 QEDEPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRS 537
Query: 1086 AFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVH 1145
E VS IEP ++EALQD DW++AM+EELN F++N+VW LV +P N +
Sbjct: 538 RVAHFCEHY----SFVSSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQN 592
Query: 1146 VIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVN 1205
V+GTKWVFRNK +E G V RNKARLVA+GYSQ EG+D+ ET+APVARLE+IR+L++++
Sbjct: 593 VVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLAYATY 652
Query: 1206 HNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 1265
H L+QMDVKSAFLNG I EEVYV QPPGFED + P+HV++L K+LYGLKQAPRAWYE
Sbjct: 653 HGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRAWYEC 712
Query: 1266 LSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFE 1325
L FL+ N F GK D TLF KT ++D+ + QIYVDDIIFGS N+S C+EFS +M +FE
Sbjct: 713 LRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFE 772
Query: 1326 MSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDK 1385
MSMMGELKYFLG QV Q EGT+I Q+KYT+++L KF M ++ KTPM L+ +
Sbjct: 773 MSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMGTNGHLDLDTG 832
Query: 1386 SGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTN 1445
V QK+YR MIGSLLYL ASRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T
Sbjct: 833 GKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPK 892
Query: 1446 LGLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEA 1505
GL Y + + L GY DAD+AG + RKSTSG CQFLG +LVSWASK+Q+++ALSTAEA
Sbjct: 893 FGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEA 952
Query: 1506 EYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHF 1565
EYI+A C Q+LWM+ L DY + +P+ CDN +AI ++ NP+ HSR KHI ++YHF
Sbjct: 953 EYIAAGHCCAQLLWMRQTLLDYGYKLTKVPLLCDNESAIKMADNPVEHSRTKHIAIRYHF 1012
Query: 1566 IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+RD+ QKG + + +++T Q ADIFTKPL E F + LN+
Sbjct: 1013 LRDHQQKGDIEISYINTKDQLADIFTKPLDEQSFTRLRHELNI 1055
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 626 bits (1614), Expect = e-177
Identities = 318/571 (55%), Positives = 417/571 (72%), Gaps = 10/571 (1%)
Query: 1039 EVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLK 1098
+VE EE++ ++ P T ++ HP + +LG+ ++ V+TRS ++
Sbjct: 1016 QVEVEEEKAQDPPMPPRIHTA----LSKDHPIDQVLGDINKGVQTRSRVA----SICEHY 1067
Query: 1099 GLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLN 1158
VS ++PK +DE L D DW+ AM EELN F++N VW LV++P + +VIGTKW+FRNK +
Sbjct: 1068 SFVSCLKPKHVDEVLCDPDWMNAMHEELNNFARNKVWILVERPRDHNVIGTKWIFRNKQD 1127
Query: 1159 EKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSA 1218
E G VVRNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ +I L QMDVKSA
Sbjct: 1128 ENGLVVRNKARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSA 1187
Query: 1219 FLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRG 1278
FLNG I+E V+V QPPGFED K P+HV+KL K+LYGLKQAPRAWYERL FLL +F G
Sbjct: 1188 FLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKQAPRAWYERLRYFLLSKDFKIG 1247
Query: 1279 KVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGI 1338
KV+TTLF K DD + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FLG+
Sbjct: 1248 KVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELNFFLGL 1307
Query: 1339 QVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGK-VCQKLYRGM 1397
Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM L+ DK GK V KLYR M
Sbjct: 1308 QIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDL-DKGGKPVDLKLYRSM 1366
Query: 1398 IGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYK 1457
IGSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K ++K
Sbjct: 1367 IGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFK 1426
Query: 1458 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQM 1517
L GY D+DYA + +RKSTSG+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+
Sbjct: 1427 LVGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQL 1486
Query: 1518 LWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLL 1577
LWMK L DY I + P+ CDN AI ++ NP+ HSR KHI++++HF+RD+V K +++
Sbjct: 1487 LWMKQTLLDYGISFTKTPLLCDNDRAIKIANNPVQHSRTKHIDIRHHFLRDHVTKCDIVI 1546
Query: 1578 KFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+ T+ Q ADIFTKPL E RF + LN+
Sbjct: 1547 SHIRTEDQLADIFTKPLNETRFCKLRNELNV 1577
Score = 145 bits (367), Expect = 8e-33
Identities = 117/475 (24%), Positives = 213/475 (44%), Gaps = 68/475 (14%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQKKLY 70
K P+F+G + WK ++ + +W I+ G+ I + +T +
Sbjct: 10 KAPIFNGTNYSTWKIKMSTHLKAMSFHIWSIVYVGFA---------ITGTPLTEIDHRNL 60
Query: 71 SQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESF 130
+ +A L +++S EE+ ++++ E A I++ L HEG + K++K L +YE+F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 131 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELTRDVE 190
M P+ES+ +M+ R ++V ++ L +YT + +++R LPE + LVT + + D+
Sbjct: 121 YMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML-INSDMS 179
Query: 191 NMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDS 250
M+ L+ ++ ++M L+KK + S S+K +++ + + E +ED
Sbjct: 180 RMTPASLLG-----KINTNDMYKLKKKEMEEASPSKKCIALQAEVEDKSKSKVNEVNEDL 234
Query: 251 GEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCFECKESGHYKSD 310
E+E+ L+++R N + + R+ + +GS + + + S++R CFE E GH+ S
Sbjct: 235 -EEEMILLARRFNDLLERRKERGRGSNSNRRRNRRLNKTLSNLR---CFEYGEKGHFASK 290
Query: 311 CPKLKKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG----- 350
CP D KK KK K ++ + +D +E S E +G
Sbjct: 291 CPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSEEEGGDDAS 350
Query: 351 ----LMAIVKDKGAES-----------KEAVDSDSESEGDPDSDDENEVFASFSTSELKH 395
M +V K A S V S S+SE D D DD S EL
Sbjct: 351 SKKKKMVVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDD-------VSYEELVS 403
Query: 396 ALSDIMDKYNSLLSKHKKLKKNLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLK 450
++ + K K L K+ +++ + + +LK N L S+ LK
Sbjct: 404 MFEELHAYSEKEIVKFKALNKDYASL-------DVLYEELKTSNERLTISHEKLK 451
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 623 bits (1607), Expect = e-176
Identities = 318/561 (56%), Positives = 403/561 (71%), Gaps = 6/561 (1%)
Query: 1048 EEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPK 1107
EEEA P+ T ++ I HP + ILG+ + V TRS VS IEP
Sbjct: 507 EEEAQPA-PPTQVRAMIQRDHPVDQILGDISKGVTTRSRL----VNFCEHNSFVSSIEPF 561
Query: 1108 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVRNK 1167
++EAL D DW+LAM+EELN F +N+VW+LV +P+ +V+GTKWVFRNK +E+G V RNK
Sbjct: 562 RVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDERGVVTRNK 620
Query: 1168 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEE 1227
ARLVA+GY+Q G+D+ ETFAPVARLE+IR+L++++ +H+ L+QMDVKSAFLNG I EE
Sbjct: 621 ARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEE 680
Query: 1228 VYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCK 1287
VYV QPPGFEDE+ PDHV KL K+LYGLKQAPRAWYE L FL+ N F GK D TLF K
Sbjct: 681 VYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFTK 740
Query: 1288 TYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGT 1347
T D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFLG QV Q +GT
Sbjct: 741 TCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGT 800
Query: 1348 YIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTAS 1407
+I Q+KYT++LLK+F M ++ AKTPM + V QK YR MIGSLLYL AS
Sbjct: 801 FISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCAS 860
Query: 1408 RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYA 1467
RPDI+ SV +CARFQSDP+E HL AVKRILRYL T GL Y K + L GY D+DYA
Sbjct: 861 RPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYA 920
Query: 1468 GDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDY 1527
G + +RKSTSG CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+
Sbjct: 921 GCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDF 980
Query: 1528 QILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWA 1587
S +P+ CDN +AI +++NP+ HSR KHI++++HF+RD+ QKG + + V T++Q A
Sbjct: 981 GYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLA 1040
Query: 1588 DIFTKPLAEDRFNFILKNLNM 1608
DIFTKPL E F + LN+
Sbjct: 1041 DIFTKPLDEKTFCRLRSELNV 1061
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 622 bits (1604), Expect = e-176
Identities = 319/599 (53%), Positives = 420/599 (69%), Gaps = 23/599 (3%)
Query: 1029 NVSDKGKAPEEVEPE-----EDEPEEEAGPSNSQTLKKSR--------------ITAAHP 1069
N+S P EVE + +DEP A PS +Q + ++ HP
Sbjct: 810 NMSIGDVKPIEVEDKPSTSTQDEPSTSASPSQAQVEVEEEKAQDPPMPPRIHTALSKDHP 869
Query: 1070 KELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQF 1129
+ +LG+ + V+TRS ++ VS +EPK +DEAL D DW+ AM EELN F
Sbjct: 870 IDQVLGDISKGVQTRSRIA----SICEHYSFVSCLEPKHVDEALCDLDWMNAMHEELNNF 925
Query: 1130 SKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 1189
++N VW+LV++P + +VIGTKW+FRNK +E G VVRNKARLVAQG +Q EG+D+ ETFAP
Sbjct: 926 ARNKVWTLVERPRDHNVIGTKWIFRNKQDENGLVVRNKARLVAQGVTQVEGLDFGETFAP 985
Query: 1190 VARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLK 1249
VARLEAIR+L++F+ +I L QMDVKS FLNG I+E V+V QPPGFED K P+HV+KL
Sbjct: 986 VARLEAIRILLAFASCFDIKLFQMDVKSVFLNGEIAELVFVEQPPGFEDPKNPNHVYKLS 1045
Query: 1250 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSAN 1309
K+LYGLKQAPRAWYERL FLL +F GKVDTTLF K DD + QIYVD IIFGS N
Sbjct: 1046 KALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDGIIFGSTN 1105
Query: 1310 QSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTV 1369
+ CKEF +MM EF+MSM+GEL +FLG+Q+ Q +GT++ Q+KY K+LLK+F + ++
Sbjct: 1106 EVFCKEFGDMMSREFDMSMIGELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKP 1165
Query: 1370 AKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETH 1429
KTPM L+ ++ V KLYR MIGSLLYLTASRPDI+FSV +CARFQ+ P+E H
Sbjct: 1166 IKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECH 1225
Query: 1430 LTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 1489
L AVKRILRYLK ++N+GL Y K ++KL GY +DYA + +RKSTSG+CQ LG +LVS
Sbjct: 1226 LVAVKRILRYLKHSSNIGLWYPKGAKFKLVGYSYSDYASCKVDRKSTSGSCQMLGRSLVS 1285
Query: 1490 WASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 1549
W+SK+Q+++ALSTAEA+Y+SA C Q+LWMK L DY I + P+ CDN +AI ++ N
Sbjct: 1286 WSSKKQNSVALSTAEAKYVSAGSCCAQLLWMKQTLLDYGISFTKTPLLCDNDSAIKIANN 1345
Query: 1550 PILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
P+ HSR KHI++++HF+RD+V K +++ + T+ Q ADIFTKPL E F + LN+
Sbjct: 1346 PVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDETCFYKLRNELNV 1404
Score = 141 bits (355), Expect = 2e-31
Identities = 119/472 (25%), Positives = 212/472 (44%), Gaps = 68/472 (14%)
Query: 14 MFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQKKLYSQH 73
MF+G + WK ++ + +W I+ G+ P E+ +L +Q
Sbjct: 1 MFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAIT------GTPLMEIDHRNLQLNAQA 54
Query: 74 HKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIME 133
A L +++S EE+ ++++ E A I++ L HE + K++K L +YE+F M
Sbjct: 55 MNA---LFNSLSQEEFDRVSNLETAYEIWNKLAEIHEDTSEYKDAKLHFLKIQYETFSML 111
Query: 134 PNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELTRDVENMS 193
P+ES+ +M+ R ++V ++ L +YT + +++R LPE + LVT + + D+ M+
Sbjct: 112 PHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML-INSDMSRMT 170
Query: 194 LEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKALQAEEEESEEASEDSGED 253
L+ ++ ++M L+KK + S S+K +++ + + E +ED E+
Sbjct: 171 PASLLG-----KINTNDMYKLKKKEMEEASSSKKCIALQAEVEDKSKSKVNEVNEDL-EE 224
Query: 254 ELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCFECKESGHYKSDCPK 313
E+ L++++ N + R+ + +GS + + + S++R CFEC E GH+ S CP
Sbjct: 225 EMVLLARKFNDLLGRRKERGRGSNSNRRRNRRPNKTFSNLR---CFECCEKGHFASKCPS 281
Query: 314 LKKD---------------KKPKKHFKTKKSLMVTFDESESEDVDSDGEVQG-------- 350
D KK KK K ++ + +D +E S E +G
Sbjct: 282 KDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSTSSGSEEEGGDDASSKK 341
Query: 351 -LMAIVKDKGAES-----------KEAVDSDSESEGDPDSDDENEVFASFSTSELKHALS 398
MA+V K A S V S S+SE D D DD S EL
Sbjct: 342 KKMAVVAIKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDD-------VSYDELVSMFE 394
Query: 399 DIMDKYNSLLSKHKKLKKNLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLK 450
++ + K K LKK+ +++ E + +LK + L S+ LK
Sbjct: 395 ELHAYSEKEIVKFKALKKDHASL-------EVLYEELKISHERLTISHEKLK 439
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 620 bits (1598), Expect = e-175
Identities = 318/561 (56%), Positives = 401/561 (70%), Gaps = 6/561 (1%)
Query: 1048 EEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPK 1107
EEEA P+ T ++ I HP + ILG+ + V TRS VS IEP
Sbjct: 1096 EEEAQPA-PPTQVRAMIQRDHPVDQILGDISKGVTTRSRL----VNFCEHYSFVSSIEPF 1150
Query: 1108 SIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVRNK 1167
++EAL D DW+LAM+EELN F +N+VW+LV +P+ +V+GTKWVFRNK +E G V RNK
Sbjct: 1151 RVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQDEHGVVTRNK 1209
Query: 1168 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEE 1227
ARLVA+GY+Q G+D+ ETFAPVARLE+IR+L++++ +H+ L+QMDVKSAFLNG I EE
Sbjct: 1210 ARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDVKSAFLNGPIKEE 1269
Query: 1228 VYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCK 1287
VYV QPPGFEDE+ PDHV KL K+LYGLKQAPRAWYE L FLL N F GK D TLF K
Sbjct: 1270 VYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLLANAFKVGKADPTLFTK 1329
Query: 1288 TYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGT 1347
T D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFLG QV Q +GT
Sbjct: 1330 TCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGT 1389
Query: 1348 YIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTAS 1407
+I Q+KYT++LLK+F M ++ AKTPM + V QK YR MIGSLLYL AS
Sbjct: 1390 FISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCAS 1449
Query: 1408 RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYA 1467
RPDI+ SV +CARFQSDP+E HL AVKRILRYL T GL Y K + L GY D+DYA
Sbjct: 1450 RPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYA 1509
Query: 1468 GDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDY 1527
G + +RKSTSG CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+
Sbjct: 1510 GCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDF 1569
Query: 1528 QILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWA 1587
S +P+ CDN + I +++NP+ HSR KHI++++HF+RD+ QKG + + V T++Q A
Sbjct: 1570 GYNLSKVPLLCDNESDIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLA 1629
Query: 1588 DIFTKPLAEDRFNFILKNLNM 1608
DIFTKPL E F + LN+
Sbjct: 1630 DIFTKPLDEKTFCRLRSELNV 1650
Score = 110 bits (275), Expect = 4e-22
Identities = 117/494 (23%), Positives = 210/494 (41%), Gaps = 77/494 (15%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQKKLY 70
KPP FDG+ + +W ++ S +W+I+ +G K S+ +
Sbjct: 99 KPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIV---------ENGMKFDSSDSPMLINEQI 149
Query: 71 SQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESF 130
++ +A +LL+++ EEY K++ + AK I+D+LK+SHEGN +K + + F
Sbjct: 150 HRNAQATTVLLASLCREEYNKVSGLDNAKQIWDTLKISHEGNDVTMLTKMELVEGELGRF 209
Query: 131 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIR-VIRCLPESWMPLVTSIELTRDV 189
M E + ++R + LV IR + T V+R ++R LV +I
Sbjct: 210 AMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRY 269
Query: 190 ENMSLEELISILKCHELKRSEMQDL---------RKKSIALKSKSEKAKVEKSKALQAEE 240
MS EE++ + E + + + IALK+ K +AL ++
Sbjct: 270 TKMSPEEILGKFVSGRMMIKEARYVDDALNGPIHEPQPIALKASRSK------EALPSKV 323
Query: 241 EESEEASEDSGEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCFE 300
+ E A ++E+ LI KR + R+ + K KGK +CF+
Sbjct: 324 AQIEAAG--LNDEEMALIIKRFKTALRGRK-EHPNKTKTKGKR-------------SCFK 367
Query: 301 CKESGHYKSDCPKLKKDK-------KPKKHFKTKKSLMVTFDESESEDVDSDGEVQGLMA 353
C + GH+ ++CP D+ + KK++K K E +S+ SD + +GL A
Sbjct: 368 CGKIGHFIANCPDNDSDQEKKSGKWEKKKNYKKAKGEAHIGKEWDSDCSSSDSDNEGLAA 427
Query: 354 IVKDKG------------AESKEAVDSDS--ESEGDPDSDDENEV-----FASFSTSELK 394
+K A+ K+ +S S + +S DE+EV F S++
Sbjct: 428 TAFNKSTLFPNERHTCLMAKEKKVCTRNSTYASSSEDESSDEDEVDYSCLFKGLDRSKID 487
Query: 395 --HALSDIMDKYNSLLSK--------HKKLKKNLSAVSKTPSEHEKIISDLKNDNHALVN 444
+ L D +++ N LL K H K + +++ +E + ++ + ++ N
Sbjct: 488 KINELIDALNEKNILLEKQEDSLYEEHDKFVEAQKSLALEIKRNEMLACEVSTCHDSISN 547
Query: 445 SNSVLKNQIAKLEE 458
S+ + AKL E
Sbjct: 548 LKSINDDLNAKLVE 561
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 617 bits (1592), Expect = e-175
Identities = 311/579 (53%), Positives = 405/579 (69%), Gaps = 12/579 (2%)
Query: 1036 APEEVEPEEDEPE------EEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRP 1089
+P P D P EE S I HP + ++G E V ++
Sbjct: 1216 SPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE- 1274
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
L V+ EPK++ AL D++W+ AM EEL F +N VWSLV+ P +VIGT
Sbjct: 1275 -----LVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGT 1329
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
KWVF+NKL E G +VRNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ +
Sbjct: 1330 KWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFK 1389
Query: 1210 LHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
L QMDVKSAFLNG I EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +F
Sbjct: 1390 LFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTF 1449
Query: 1270 LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM 1329
LL+N F G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMM
Sbjct: 1450 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1509
Query: 1330 GELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKV 1389
GEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V
Sbjct: 1510 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1569
Query: 1390 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1449
Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI RY+K T G+
Sbjct: 1570 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIW 1629
Query: 1450 YKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1509
Y + + + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++
Sbjct: 1630 YSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVA 1689
Query: 1510 AAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1569
AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD
Sbjct: 1690 AASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDN 1749
Query: 1570 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
V+KG ++L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1750 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1788
Score = 153 bits (387), Expect = 4e-35
Identities = 127/457 (27%), Positives = 206/457 (44%), Gaps = 73/457 (15%)
Query: 8 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQK 67
Y+AKP +FDG F WK R+E++ ++W+ + Y P DAD +T
Sbjct: 5 YSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANM 56
Query: 68 KLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKY 127
+++AR ++ IS E+ ++ + A ++ +L HEGN ++ + ++Y
Sbjct: 57 AQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEY 116
Query: 128 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPES-WMPLVTSIELT 186
+ F M P ESI+ F RF +++ +R + K ++ D+ ++ CL W VTSI +
Sbjct: 117 QRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITES 176
Query: 187 RDVENMSLEELISILKCHELKRSEMQDLRKKSIAL-------KSKSEKAKVEKSKALQAE 239
+ ++++++L S LK HE+ + L K S+AL S ++ A V +L A
Sbjct: 177 APLSDLTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSLAAL 235
Query: 240 EEESEEASEDSGEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCF 299
+EE E ED+L L +++ +R +K+ + + +G + CF
Sbjct: 236 HSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPFVCF 280
Query: 300 ECKESGHYKSDCPKLKK--DKKPKK----HFKTKKSLM--------VTFDESESEDVDSD 345
EC E H + +CPKLKK DK KK K KK LM +E + D+DSD
Sbjct: 281 ECGEPNHKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD 340
Query: 346 GEVQG----------------------LMAIV-KDKGAESKEAVDSDSES-EG---DPDS 378
+ Q LMA+ KD +E E D S +G D
Sbjct: 341 DDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSC 400
Query: 379 DDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
D + V S + H + +I DKY S K +KLK
Sbjct: 401 SDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLK 437
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 616 bits (1589), Expect = e-174
Identities = 310/579 (53%), Positives = 405/579 (69%), Gaps = 12/579 (2%)
Query: 1036 APEEVEPEEDEPE------EEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRP 1089
+P P D P EE S I HP + ++G E V ++
Sbjct: 1216 SPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE- 1274
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
L V+ EPK++ AL D++W+ AM EEL F +N VWSLV+ P +VIGT
Sbjct: 1275 -----LVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGT 1329
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
KWVF+NKL E G +VRNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ +
Sbjct: 1330 KWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFK 1389
Query: 1210 LHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
L QMDVKSAFLNG I EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +F
Sbjct: 1390 LFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTF 1449
Query: 1270 LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM 1329
LL+N F G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMM
Sbjct: 1450 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1509
Query: 1330 GELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKV 1389
GEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V
Sbjct: 1510 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1569
Query: 1390 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1449
Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKR+ RY+K T G+
Sbjct: 1570 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIW 1629
Query: 1450 YKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1509
Y + + + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++
Sbjct: 1630 YSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVA 1689
Query: 1510 AAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1569
AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD
Sbjct: 1690 AASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDN 1749
Query: 1570 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
V+KG ++L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1750 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1788
Score = 153 bits (387), Expect = 4e-35
Identities = 127/457 (27%), Positives = 206/457 (44%), Gaps = 73/457 (15%)
Query: 8 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQK 67
Y+AKP +FDG F WK R+E++ ++W+ + Y P DAD +T
Sbjct: 5 YSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANM 56
Query: 68 KLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKY 127
+++AR ++ IS E+ ++ + A ++ +L HEGN ++ + ++Y
Sbjct: 57 AQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEY 116
Query: 128 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPES-WMPLVTSIELT 186
+ F M P ESI+ F RF +++ +R + K ++ D+ ++ CL W VTSI +
Sbjct: 117 QRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITES 176
Query: 187 RDVENMSLEELISILKCHELKRSEMQDLRKKSIAL-------KSKSEKAKVEKSKALQAE 239
+ ++++++L S LK HE+ + L K S+AL S ++ A V +L A
Sbjct: 177 APLSDLTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSLAAL 235
Query: 240 EEESEEASEDSGEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCF 299
+EE E ED+L L +++ +R +K+ + + +G + CF
Sbjct: 236 HSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPFVCF 280
Query: 300 ECKESGHYKSDCPKLKK--DKKPKK----HFKTKKSLM--------VTFDESESEDVDSD 345
EC E H + +CPKLKK DK KK K KK LM +E + D+DSD
Sbjct: 281 ECGEPNHKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD 340
Query: 346 GEVQG----------------------LMAIV-KDKGAESKEAVDSDSES-EG---DPDS 378
+ Q LMA+ KD +E E D S +G D
Sbjct: 341 DDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSC 400
Query: 379 DDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
D + V S + H + +I DKY S K +KLK
Sbjct: 401 SDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLK 437
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 616 bits (1589), Expect = e-174
Identities = 317/577 (54%), Positives = 414/577 (70%), Gaps = 13/577 (2%)
Query: 1032 DKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSE 1091
D+G+ E+V P A P Q++++ HP + ILG+ ++ V TRS
Sbjct: 370 DQGEEGEQVPPSSINL---AHPRIHQSIQRD-----HPTDNILGDINKGVSTRSHIANFC 421
Query: 1092 ETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKW 1151
E VS +EP ++EAL D DW++AM+EELN F++N+VW+LV++ +VIGTKW
Sbjct: 422 EHY----SFVSSLEPLRVEEALNDPDWVMAMQEELNNFTRNEVWTLVERSRQ-NVIGTKW 476
Query: 1152 VFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLH 1211
+FRNK +E G V+RNKARLVAQG++Q EG+D+ ETFAPVARLE+IR+L++F+ N N L+
Sbjct: 477 IFRNKQDEAGVVIRNKARLVAQGFTQIEGLDFGETFAPVARLESIRILLTFATNLNFKLY 536
Query: 1212 QMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLL 1271
QMDVKSAFLNG I+E VYV QPPGF+D K P+HV+KL K+LY LKQAPRAWYE L +FL+
Sbjct: 537 QMDVKSAFLNGLINELVYVEQPPGFKDPKYPNHVYKLHKALYELKQAPRAWYECLRNFLV 596
Query: 1272 ENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGE 1331
+N F GK D+TLF K + +DI + QIYVDDIIFGS N+S +EFS MM FEMSMMGE
Sbjct: 597 KNGFEIGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGE 656
Query: 1332 LKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQ 1391
LK+FLG+Q+ Q EGT+I Q+KY K++LKKF M + TPM L+ ++ V Q
Sbjct: 657 LKFFLGLQIKQLKEGTFICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQ 716
Query: 1392 KLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK 1451
K+YR +IGSLLYL ASRPDI+ SV +CARFQ+ P+E HL AVKRILRYL T NLGL Y
Sbjct: 717 KVYRSIIGSLLYLCASRPDIMLSVCMCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYP 776
Query: 1452 KT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAA 1511
K + L GY DADYAG + +RKSTSG CQFLG +LVSW+SK+Q+++ALSTAEAEYIS
Sbjct: 777 KGARFDLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTG 836
Query: 1512 ICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQ 1571
C Q++WMK L DY + S IP+ CDN +AI ++ NP+ HSR KHI++++HF+RD+
Sbjct: 837 SCCAQLIWMKQTLRDYGLNVSKIPLLCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHST 896
Query: 1572 KGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+G + ++ V D Q ADIFTKPL E RF + LN+
Sbjct: 897 RGDIDIQHVRIDKQLADIFTKPLDEARFCELRSELNI 933
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 616 bits (1589), Expect = e-174
Identities = 310/579 (53%), Positives = 405/579 (69%), Gaps = 12/579 (2%)
Query: 1036 APEEVEPEEDEPE------EEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRP 1089
+P P D P EE S I HP + ++G E V ++
Sbjct: 1298 SPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE- 1356
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
L V+ EPK++ AL D++W+ AM EEL F +N VWSLV+ P +VIGT
Sbjct: 1357 -----LVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGT 1411
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
KWVF+NKL E G +VRNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ +
Sbjct: 1412 KWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFK 1471
Query: 1210 LHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
L QMDVKSAFLNG I EEVYV QPPGFE+ K P+HVFKL+K+LYGLKQAPRAWYERL +F
Sbjct: 1472 LFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTF 1531
Query: 1270 LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM 1329
LL+N F G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMM
Sbjct: 1532 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1591
Query: 1330 GELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKV 1389
GEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V
Sbjct: 1592 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1651
Query: 1390 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1449
Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKR+ RY+K T G+
Sbjct: 1652 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIW 1711
Query: 1450 YKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1509
Y + + + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++
Sbjct: 1712 YSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVA 1771
Query: 1510 AAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1569
AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD
Sbjct: 1772 AASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDN 1831
Query: 1570 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
V+KG ++L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1832 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1870
Score = 153 bits (387), Expect = 4e-35
Identities = 127/457 (27%), Positives = 206/457 (44%), Gaps = 73/457 (15%)
Query: 8 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQK 67
Y+AKP +FDG F WK R+E++ ++W+ + Y P DAD +T
Sbjct: 5 YSAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANM 56
Query: 68 KLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKY 127
+++AR ++ IS E+ ++ + A ++ +L HEGN ++ + ++Y
Sbjct: 57 AQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEY 116
Query: 128 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPES-WMPLVTSIELT 186
+ F M P ESI+ F RF +++ +R + K ++ D+ ++ CL W VTSI +
Sbjct: 117 QRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITES 176
Query: 187 RDVENMSLEELISILKCHELKRSEMQDLRKKSIAL-------KSKSEKAKVEKSKALQAE 239
+ ++++++L S LK HE+ + L K S+AL S ++ A V +L A
Sbjct: 177 APLSDLTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVYGGFSLAAL 235
Query: 240 EEESEEASEDSGEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCF 299
+EE E ED+L L +++ +R +K+ + + +G + CF
Sbjct: 236 HSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPFVCF 280
Query: 300 ECKESGHYKSDCPKLKK--DKKPKK----HFKTKKSLM--------VTFDESESEDVDSD 345
EC E H + +CPKLKK DK KK K KK LM +E + D+DSD
Sbjct: 281 ECGEPNHKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD 340
Query: 346 GEVQG----------------------LMAIV-KDKGAESKEAVDSDSES-EG---DPDS 378
+ Q LMA+ KD +E E D S +G D
Sbjct: 341 DDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSC 400
Query: 379 DDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
D + V S + H + +I DKY S K +KLK
Sbjct: 401 SDNDSVDDELSKERMAHLMIEISDKYRSSKYKIEKLK 437
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 616 bits (1589), Expect = e-174
Identities = 311/571 (54%), Positives = 414/571 (72%), Gaps = 9/571 (1%)
Query: 1039 EVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLK 1098
+VE EE++ ++ P T ++ HP + +LG+ + V+TRS ++
Sbjct: 1406 QVEVEEEKAQDPPMPQRIHTA----LSKDHPIDQVLGDISKDVQTRSRVA----SICEHY 1457
Query: 1099 GLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLN 1158
VS +EPK +DEAL D DW+ AM EELN F++N VW+LV++P + +VIGTKWVFRNK +
Sbjct: 1458 SFVSCLEPKHVDEALCDLDWMNAMHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQD 1517
Query: 1159 EKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSA 1218
EKG VVR+KARLVAQ ++Q EG+D+ ETFAPVARLEAIR+L++F+ +I L QMDVKSA
Sbjct: 1518 EKGLVVRSKARLVAQDFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSA 1577
Query: 1219 FLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRG 1278
FLNG I+E V+V QPPGFED K P+HV+KL K+LYGLK APRAWYERL FLL +F G
Sbjct: 1578 FLNGEIAELVFVEQPPGFEDPKNPNHVYKLSKALYGLKPAPRAWYERLRDFLLPKDFKIG 1637
Query: 1279 KVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGI 1338
KVDTTL K DD ++ QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FLG+
Sbjct: 1638 KVDTTLSTKIIDDDFVVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMVGELSFFLGL 1697
Query: 1339 QVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMI 1398
Q+ Q +GT++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLY MI
Sbjct: 1698 QIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYHSMI 1757
Query: 1399 GSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKL 1458
GSLLYLTASRPDI+FSV +CARFQ+ P++ HL AVKRILRYLK ++ +GL Y K ++K+
Sbjct: 1758 GSLLYLTASRPDIMFSVCMCARFQAAPKKCHLVAVKRILRYLKHSSTIGLWYPKGAKFKI 1817
Query: 1459 SGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 1518
Y D DYA + +RKSTSG+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+L
Sbjct: 1818 VSYSDLDYAVCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLL 1877
Query: 1519 WMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY-VQKGVLLL 1577
WMK L DY I + P+ CDN +AI ++ NP+ HSR KHI+++YHF++D+ V K +++
Sbjct: 1878 WMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRYHFLKDHVVAKSDIVI 1937
Query: 1578 KFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+ T++Q ADIFTKPL E RF + LN+
Sbjct: 1938 SHIRTENQLADIFTKPLDETRFCKLRNELNV 1968
Score = 64.7 bits (156), Expect = 2e-08
Identities = 110/478 (23%), Positives = 178/478 (37%), Gaps = 89/478 (18%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQKKLY 70
K PMF+G + WK ++ + +W I+ G+ I + +T +
Sbjct: 771 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFA---------ITGTHLTGIDHRNL 821
Query: 71 SQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESF 130
+ +A L + +S EE ++++ E A ++ L HEG + ++K L +YE+F
Sbjct: 822 QLNAQAMNALFNCLSQEECDRVSNLETAYENWNKLAEIHEGTSEYNDAKLHFLKIQYETF 881
Query: 131 IMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIELTRDVE 190
M P+ES+ M+ R I N Y K + E P I +VE
Sbjct: 882 SMLPHESVNAMYGRLNASWGKIN-TNDMYKLKKKEM-------EETSPSKKCIAPQAEVE 933
Query: 191 NMSL-------EELISILKC---------HELKRSEMQDLRKKSIALKSKSEKAKVEKSK 234
+ E+ KC +K+S L KK LK + +K +V
Sbjct: 934 DKGKGKCFECGEKRHFASKCPSKDDDGDKSSMKKSGGYKLMKK---LKKEGKKIEVFIGD 990
Query: 235 ALQAEEEESEEASEDSGEDELTLISKRLNRI-WKHRQSKF-------KGSGKAKG----- 281
+ EE + SE+ G D+ + K++ + K S F KGS K
Sbjct: 991 WVTNEESSASSGSEEEGGDDASSKKKKMAVVAIKEAPSPFAPLCLMAKGSSKVTSLSDSE 1050
Query: 282 -----KYESSGQKKSSIREVTCFECKESGHYKSDCPKLKKD----------------KKP 320
Y S + S E+ + KE +K+ LKKD +
Sbjct: 1051 SDDDCDYASYDELVSMFEELHAYSEKEIVKFKA----LKKDHASLEVLYEELKTSHERLT 1106
Query: 321 KKHFKTKK---SLMVTFDESESEDVDSDGEVQGLMAIVKDKGAESKEA-VDSDSESEGDP 376
H K K+ +L+ T+ DV G+ ++ D A A V S S S
Sbjct: 1107 ISHEKLKEAHDNLLSTYQHGALIDV-------GISCVLLDDSATCHIAHVASSSISTSCD 1159
Query: 377 DSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLKKNLSAVSKTPSEHEKIISD 434
D D S S+S + + N L + KL K+L K + +KI+S+
Sbjct: 1160 DLVD----MPSSSSSPCVSICDASLVENNELKEQVAKLNKSLERCFKGKNTLDKILSE 1213
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 616 bits (1588), Expect = e-174
Identities = 311/579 (53%), Positives = 404/579 (69%), Gaps = 12/579 (2%)
Query: 1036 APEEVEPEEDEPE------EEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRP 1089
+P P D P EE S I HP + ++G E V ++
Sbjct: 831 SPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYD- 889
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
L V+ EPK++ AL D++W+ AM EEL F +N VWSLV+ P +VIGT
Sbjct: 890 -----LVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGT 944
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
KWVF+NKL E G +VRNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ +
Sbjct: 945 KWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFK 1004
Query: 1210 LHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
L QMDVKSAFLNG I EEVYV QPPGFE+ K P+HVFKL K+LYGLKQAPRAWYERL +F
Sbjct: 1005 LFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTF 1064
Query: 1270 LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM 1329
LL+N F G VD TLF D L+VQIYVDDIIFG ++ +L +FS++M EFEMSMM
Sbjct: 1065 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMM 1124
Query: 1330 GELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKV 1389
GEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V
Sbjct: 1125 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1184
Query: 1390 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1449
Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI RY+K T G+
Sbjct: 1185 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIW 1244
Query: 1450 YKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1509
Y + + + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++
Sbjct: 1245 YSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVA 1304
Query: 1510 AAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1569
AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD
Sbjct: 1305 AASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDN 1364
Query: 1570 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
V+KG ++L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1365 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1403
Score = 119 bits (298), Expect = 8e-25
Identities = 91/345 (26%), Positives = 164/345 (47%), Gaps = 46/345 (13%)
Query: 27 LESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQKKLYSQHHKARAILLSAISY 86
+E++ ++W+ + Y P DAD +T +++AR ++ IS
Sbjct: 1 MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 52
Query: 87 EEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 146
E+ ++ + A ++ +L HEGN ++ + ++Y+ F M P ESI+ F RF
Sbjct: 53 GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 112
Query: 147 LLVAGIRPLNKSYTTKDHVIRVIRCLPES-WMPLVTSIELTRDVENMSLEELISILKCHE 205
+V+ +R + K ++ D+ ++ CL W VTSI + + ++++++L S LK HE
Sbjct: 113 EIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 172
Query: 206 LKRSEMQDLRKKSIAL-------KSKSEKAKVEKSKALQAEEEESEEASEDSGEDELTLI 258
+ + L K S+AL S ++ A V +L A +EE E ED+L L
Sbjct: 173 MDVFHRKGL-KHSMALVADPSGSTSSNDSAFVCGGFSLAALHSVTEEQLEKIPEDDLALF 231
Query: 259 SKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCFECKESGHYKSDCPKLKK-- 316
+++ +R +K+ ++K +G + CFEC E H + +CPKLKK
Sbjct: 232 ARKFSRAYKNVRNKKRG---------------KTNEPFVCFECGEPNHIRVNCPKLKKKS 276
Query: 317 ---DKKPK------KHFKTKKSL---MVTFDESESEDVDSDGEVQ 349
KKP+ K+ KK++ + +E + D+DSD + Q
Sbjct: 277 DKTTKKPEGQGRKGKNDLMKKAIHKVLAALEEVQLSDIDSDDDDQ 321
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 613 bits (1580), Expect = e-173
Identities = 301/573 (52%), Positives = 410/573 (71%), Gaps = 5/573 (0%)
Query: 1027 GFNVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSA 1086
G NV+D K+ E E D +E+ + +RI HPKELI+G+ + V TRS
Sbjct: 994 GDNVADAAKSGENAE-NSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSR 1052
Query: 1087 FRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHV 1146
E ++S VS IEPK++ EAL D+ WI AM+EEL QF +N+VW LV +PE +V
Sbjct: 1053 ----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 1108
Query: 1147 IGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNH 1206
IGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAPVARLE+IRLL+ +
Sbjct: 1109 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1168
Query: 1207 NIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 1266
L+QMDVKSAFLNGY++EEVYV QP GF D PDHV++LKK+LYGLKQAPRAWYERL
Sbjct: 1169 KFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERL 1228
Query: 1267 SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 1326
+ FL + + +G +D TLF K ++++I QIYVDDI+FG + + + F + MQ+EFEM
Sbjct: 1229 TEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEM 1288
Query: 1327 SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 1386
S++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP L K++
Sbjct: 1289 SLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAG 1348
Query: 1387 GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 1446
V Q LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HLT VKRIL+Y+ GT++
Sbjct: 1349 TSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDY 1408
Query: 1447 GLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 1506
G+MY L GYCDAD+AG +RKSTSG C +LG+NL+SW SK+Q+ ++LSTAEAE
Sbjct: 1409 GIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAE 1468
Query: 1507 YISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 1566
YI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HSR KHI++++H+I
Sbjct: 1469 YIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYI 1528
Query: 1567 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1599
RD V V+ LK VDT+ Q ADIFTK L ++F
Sbjct: 1529 RDLVDDKVITLKHVDTEEQIADIFTKALDANQF 1561
Score = 157 bits (397), Expect = 3e-36
Identities = 123/463 (26%), Positives = 214/463 (45%), Gaps = 54/463 (11%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDADGKKI----PRSEMTA 64
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D +GK P + T
Sbjct: 12 RPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTK 71
Query: 65 EQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLI 124
E+ +L + KA L + + ++ I AK ++ LK++HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLA 131
Query: 125 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIE 184
K+E+ M+ E I + + L + T + V +++R LP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 185 LTRDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKALQAEEEESE 244
+D+ NM ++ELI L+ EL S+ + + K++A S E EE+E +
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYD 240
Query: 245 EASEDSGEDELTLISKRLNRIWKHRQSKFKGSGK------AKG-KYES-SGQKKSSIREV 296
+++ + + L+ K+ N++ + K + KG KY+ S K S + +
Sbjct: 241 LDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGI 300
Query: 297 TCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIV 355
C C+ GH ++CP K K +K L V ++ESE + DSD +V L I
Sbjct: 301 QCHGCEGYGHIIAECPTHLK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIF 352
Query: 356 KDKGAESKEAVDSDSESEGDPDSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
+ ++++ D+DSE D EL + + K +L + +LK
Sbjct: 353 E----TAEDSSDTDSEITFD----------------ELAASYRKLCIKSEKILQQEAQLK 392
Query: 416 KNLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLKNQIAKLEE 458
K ++ + HE+ IS+LK + L + +K I L +
Sbjct: 393 KVIADLEAEKEAHEEEISELKGEVGFLNSKLETMKKSIKMLNK 435
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 613 bits (1580), Expect = e-173
Identities = 301/573 (52%), Positives = 410/573 (71%), Gaps = 5/573 (0%)
Query: 1027 GFNVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSA 1086
G NV+D K+ E E D +E+ + +RI HPKELI+G+ + V TRS
Sbjct: 992 GDNVADAAKSGENAE-NSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSR 1050
Query: 1087 FRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHV 1146
E ++S VS IEPK++ EAL D+ WI AM+EEL QF +N+VW LV +PE +V
Sbjct: 1051 ----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 1106
Query: 1147 IGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNH 1206
IGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAPVARLE+IRLL+ +
Sbjct: 1107 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1166
Query: 1207 NIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 1266
L+QMDVKSAFLNGY++EEVYV QP GF D PDHV++LKK+LYGLKQAPRAWYERL
Sbjct: 1167 KFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERL 1226
Query: 1267 SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 1326
+ FL + + +G +D TLF K ++++I QIYVDDI+FG + + + F + MQ+EFEM
Sbjct: 1227 TEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEM 1286
Query: 1327 SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 1386
S++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP L K++
Sbjct: 1287 SLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAG 1346
Query: 1387 GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 1446
V Q LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HLT VKRIL+Y+ GT++
Sbjct: 1347 TSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDY 1406
Query: 1447 GLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 1506
G+MY L GYCDAD+AG +RKSTSG C +LG+NL+SW SK+Q+ ++LSTAEAE
Sbjct: 1407 GIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAE 1466
Query: 1507 YISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 1566
YI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HSR KHI++++H+I
Sbjct: 1467 YIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYI 1526
Query: 1567 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1599
RD V V+ LK VDT+ Q ADIFTK L ++F
Sbjct: 1527 RDLVDDKVITLKHVDTEEQIADIFTKALDANQF 1559
Score = 154 bits (390), Expect = 2e-35
Identities = 134/510 (26%), Positives = 230/510 (44%), Gaps = 61/510 (11%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDADGKKI----PRSEMTA 64
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D +GK P + T
Sbjct: 12 RPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTK 71
Query: 65 EQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLI 124
E+ +L + KA L + + ++ I AK ++ LK++HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLA 131
Query: 125 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIE 184
K+E+ M+ E I + + L + T + V +++R LP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 185 LTRDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKALQAEEEESE 244
+D+ NM ++ELI L+ EL S+ + + K++A S E EE+E +
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYD 240
Query: 245 EASEDSGEDELTLISKRLNRIWKHRQSKFKGSGK------AKG-KYE-SSGQKKSSIREV 296
+++ + + L+ K+ N++ + K + KG KY+ S K S + +
Sbjct: 241 LNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKSDVKPSHSKGI 300
Query: 297 TCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIV 355
C C+ GH ++CP K K +K L V ++ESE + DSD +V L I
Sbjct: 301 QCHGCEGYGHIIAECPTHLK--------KHRKGLSVCQSDTESEQESDSDRDVNALTGIF 352
Query: 356 KDKGAESKEAVDSDSESEGDPDSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
+ ++++ D+DSE D EL + + K +L + +LK
Sbjct: 353 E----TAEDSSDTDSEITFD----------------ELATSYRKLCIKSEKILQQEAQLK 392
Query: 416 KNLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLKNQIAKLEEV-IACDASDSKHESKYE 474
K ++ + H++ IS+LK + L NS L+N ++ + D D
Sbjct: 393 KVIADLEAEKEAHKEEISELKGEVGFL---NSKLENMTKSIKMLNKGSDTLDEVLLLGKN 449
Query: 475 KSFQR---FLAKSVDRSLMASMIYGVSRNG 501
QR F KS R+ M + +R G
Sbjct: 450 AGNQRGLGFNPKSAGRTTMTEFVPAKNRTG 479
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 612 bits (1579), Expect = e-173
Identities = 310/579 (53%), Positives = 402/579 (68%), Gaps = 12/579 (2%)
Query: 1036 APEEVEPEEDEPE------EEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRP 1089
+P P D P EE S I HP + ++G E V ++
Sbjct: 1220 SPLTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYE- 1278
Query: 1090 SEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGT 1149
L V+ EPK++ AL D++W+ AM EEL F +N VWSLV+ P VIGT
Sbjct: 1279 -----LVNSAFVASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFSVIGT 1333
Query: 1150 KWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIV 1209
KWVF+NKL E G +VRNKARLVAQG++Q EG+D+ ETFAPVARLEAIR+L++F+ +
Sbjct: 1334 KWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFK 1393
Query: 1210 LHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSF 1269
L QMDVKSAFLNG I EEVYV QPPGFE+ K P+HVFKL K+LYGLKQAPRAWYERL +F
Sbjct: 1394 LFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTF 1453
Query: 1270 LLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMM 1329
LL+N F G VD TLF D L+VQIYVDDIIFG ++ +L +F ++M EFEMSMM
Sbjct: 1454 LLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMM 1513
Query: 1330 GELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKV 1389
GEL +FLG+Q+ QT EG ++HQ+KY+KELLKKF+M + TPM T L ++ +V
Sbjct: 1514 GELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEV 1573
Query: 1390 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1449
Q+ YR MIGSLLYLTASRPDI FSV LCARFQ+ PR +H AVKRI RY+K T G+
Sbjct: 1574 DQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIW 1633
Query: 1450 YKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1509
Y + + + DAD+AG + +RKSTSG C FLG++LVSW+S++QS++A STAEAEY++
Sbjct: 1634 YSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVA 1693
Query: 1510 AAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 1569
AA +Q+LWM L+DY + S +P+ CDNT+AI+++KNP+ HSR KHIE++YHF+RD
Sbjct: 1694 AASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDN 1753
Query: 1570 VQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
V+KG ++L+FV+++ Q ADIFTKPL RF F+ L +
Sbjct: 1754 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1792
Score = 145 bits (367), Expect = 8e-33
Identities = 126/457 (27%), Positives = 204/457 (44%), Gaps = 76/457 (16%)
Query: 8 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQK 67
Y+ KP +FDG F WK R+E++ ++W+ + Y P D D +T
Sbjct: 5 YSMKPFVFDGHNFVIWKARMEAYLPSQGHNVWNKVKSPYTVPDDVD--------ITPANM 56
Query: 68 KLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKY 127
+++AR ++ IS E+ ++ + A ++ +L HEGN ++ ++ ++Y
Sbjct: 57 AQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLNQ---FHKEY 113
Query: 128 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPES-WMPLVTSIELT 186
+ F M P ESI+ F RF +V+ +R + K ++ D+ ++ CL W VTSI +
Sbjct: 114 QRFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITES 173
Query: 187 RDVENMSLEELISILKCHELKRSEMQDLRKKSIAL-------KSKSEKAKVEKSKALQAE 239
+ +++++L S LK HE+ + L K S+AL S ++ A V +L A
Sbjct: 174 APLSELTMDKLYSKLKTHEMDVFHRKGL-KHSMALVADPSGSTSSNDSAFVCGGFSLAAL 232
Query: 240 EEESEEASEDSGEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTCF 299
+EE E ED+L L +++ +R +K+ + + +G + CF
Sbjct: 233 HSVTEEQLEKIPEDDLALFARKFSRAYKNVRDRKRG---------------KTNEPFVCF 277
Query: 300 ECKESGHYKSDCPKLKK--DKKPKK----HFKTKKSLM--------VTFDESESEDVDSD 345
EC E H + +CPKLKK DK KK K KK LM +E + D+DSD
Sbjct: 278 ECGEPNHIRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD 337
Query: 346 GEVQG----------------------LMAIV-KDKGAESKEAVDSDSES-EG---DPDS 378
+ Q LMA+ KD +E E D S +G D
Sbjct: 338 DDDQEKGDKDFSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSC 397
Query: 379 DDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
D + V S + H + +I DKY S K +KLK
Sbjct: 398 SDNDTVDDELSKERMAHLMIEISDKYRSSKYKIEKLK 434
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 611 bits (1576), Expect = e-173
Identities = 293/508 (57%), Positives = 385/508 (75%)
Query: 1101 VSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLNEK 1160
V+ EPK + AL D+ WI AM EEL F +N VW+LV+ P +VIGTKWVF+NK NE
Sbjct: 905 VASFEPKDVSHALTDESWINAMHEELENFERNKVWTLVEPPSGHNVIGTKWVFKNKQNED 964
Query: 1161 GDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFL 1220
G +VRNKARLVAQG++Q EG+D+ ETFAPVAR+EAIRLL++F+ + L+QMDVKSAFL
Sbjct: 965 GLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFL 1024
Query: 1221 NGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKV 1280
NG+I EEVYV QPPGFE+ P+HVFKL K+LYGLKQAPRAWY+RL +FLL F GKV
Sbjct: 1025 NGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKV 1084
Query: 1281 DTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQV 1340
D TLF + D+ L VQIYVDDIIFG + ++ +F+E M+ EFEMSMMGEL YFLG+Q+
Sbjct: 1085 DKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQI 1144
Query: 1341 DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMIGS 1400
QTP+GT++HQ+KYTK+LL++F M TP+ T +L+ ++ V QK YR MIGS
Sbjct: 1145 KQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGS 1204
Query: 1401 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSG 1460
LLYLTASRPDI F+V LCARFQ+ PR +H AVKRI+RYL T G+ Y + LSG
Sbjct: 1205 LLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSG 1264
Query: 1461 YCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWM 1520
Y DAD+ G R +RKSTSG C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+
Sbjct: 1265 YSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWL 1324
Query: 1521 KHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFV 1580
L+DY I +P++CDNT+AI+++KNP+ HSR KHI++++HF+RD+V+KG + L+F+
Sbjct: 1325 LSTLKDYGITFEKVPLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFL 1384
Query: 1581 DTDHQWADIFTKPLAEDRFNFILKNLNM 1608
DT Q ADIFTKPL +RF F+ L +
Sbjct: 1385 DTKLQIADIFTKPLDSNRFAFLRGELGV 1412
Score = 132 bits (333), Expect = 7e-29
Identities = 119/497 (23%), Positives = 225/497 (44%), Gaps = 58/497 (11%)
Query: 8 YNAKPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERPVDADGKKIPRSEMTAEQK 67
++ KP +FDG F +W +++S+ + + D+W + Y IP + T K
Sbjct: 7 FSTKPHIFDGTDFPHWCSKMQSYIMAENYDIWRKVSHPYV---------IPEAINTDALK 57
Query: 68 KLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLIQKY 127
+ + KAR IL S IS +Y ++ E A I+++LK H+G K +KE + ++Y
Sbjct: 58 TEFENNCKARNILSSGISRSDYDRVAHLETAHEIWNALKNFHQGTKNIKELRRDLFKKEY 117
Query: 128 ESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPES-----WMPLVTS 182
F M+ E++++ SRF +++ +R ++ SY + R W VTS
Sbjct: 118 IKFEMKSGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTS 177
Query: 183 IELTRDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKA----LQA 238
I+ + ++ ++L+ L + LK E+ + + KS AL S S V+ S + L A
Sbjct: 178 IQESVNMSTLTLDSLYTKLKTREMNILS-RKVDSKSSALVSSSSSLIVDASSSMPSFLAA 236
Query: 239 EEEESEEASEDSGEDELTLISKRLNRIWKHRQSKFKGSGKAKGKYESSGQKKSSIREVTC 298
S++ E E++L L++ R+ R + +++ +G C
Sbjct: 237 FNATSDDQLEQIEEEDLALVANRIARAMNNARNRKRGGPN------------------RC 278
Query: 299 FECKESGHYKSDCPKLKKDKKPKKH-FKTKKSLMVTFDESESEDVDSDGEVQGLMAIVKD 357
FEC H +S CPKL + K+ K KT + +++S+ + +++ L +
Sbjct: 279 FECGSIDHLRSHCPKLGRGKREDKDGEKTNNNKPNNYNKSKGS--NQGRKMENLRKAFQQ 336
Query: 358 KGAESKEAVDSDSESEGDPDSDDENEV-FASFSTSELKHALSDIMDKYNSLLSKHKKLKK 416
A + D D ES D + ++V F + S+ ++ +++ S ++
Sbjct: 337 VCAAFEPLSDVDGESGDDDKGKNVSDVCFMARGESDTEYEDNEV--------SAFEEAIN 388
Query: 417 NLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLKNQ---IAKLEEVIACDASDSKHESKY 473
LSA +K K+ SD K + + +++ + VL + +A+ E V D+ DS+H +
Sbjct: 389 ILSAKNK------KVFSDGKKNLNMILDQSKVLVLEVALVARKENVWIVDSGDSRHMTGD 442
Query: 474 EKSFQRFLAKSVDRSLM 490
+ F S S++
Sbjct: 443 KNWFSSLKKASKTESIV 459
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 610 bits (1574), Expect = e-173
Identities = 300/573 (52%), Positives = 409/573 (71%), Gaps = 5/573 (0%)
Query: 1027 GFNVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSA 1086
G NV+D K+ E E D +E+ + +RI HPKELI+G+ + V TRS
Sbjct: 994 GDNVADAAKSGENAE-NSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSR 1052
Query: 1087 FRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHV 1146
E ++S VS IEPK++ EAL D+ WI AM+EEL QF +N+VW LV +PE +V
Sbjct: 1053 ----EVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNV 1108
Query: 1147 IGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNH 1206
IGTKW+F+NK NE+G + RNKARLVAQGY+Q EG+D+ ETFAPVARLE+IRLL+ +
Sbjct: 1109 IGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACIL 1168
Query: 1207 NIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 1266
L+QMDVKSAFLNGY++EEVYV QP GF D PDHV++LKK+LYGLKQAPRAWYERL
Sbjct: 1169 KFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERL 1228
Query: 1267 SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 1326
+ FL + + +G +D TLF K ++++I QIYVDDI+FG + + + F + MQ+EFEM
Sbjct: 1229 TEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEM 1288
Query: 1327 SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 1386
S++GEL YFLG+QV Q + ++ QS+Y K ++KKF M ++ +TP L K++
Sbjct: 1289 SLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAG 1348
Query: 1387 GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 1446
V QK YR MIGSLLYLTASRPDI ++V +CAR+Q++P+ +HL VKRIL+Y+ GT++
Sbjct: 1349 TSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDY 1408
Query: 1447 GLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 1506
G+MY L GYCDAD+AG +RKSTSG C +LG+NL+SW SK+Q+ ++LSTAEAE
Sbjct: 1409 GIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAE 1468
Query: 1507 YISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFI 1566
YI+A +Q++WMK L++Y + + + +YCDN +AI++SKNP+ HSR KHI++++H+I
Sbjct: 1469 YIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYI 1528
Query: 1567 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF 1599
RD V V+ LK VDT+ Q ADIFTK L ++F
Sbjct: 1529 RDLVDDKVITLKHVDTEEQIADIFTKALDANQF 1561
Score = 154 bits (388), Expect = 3e-35
Identities = 134/510 (26%), Positives = 229/510 (44%), Gaps = 61/510 (11%)
Query: 11 KPPMFDGQRFEYWKDRLESFFLGFDADLWDIIVDGYERP--VDADGKKI----PRSEMTA 64
+PP+ DG +EYWK R+ +F D+ W ++ G+E P +D +GK P + T
Sbjct: 12 RPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTK 71
Query: 65 EQKKLYSQHHKARAILLSAISYEEYQKITDREFAKGIFDSLKMSHEGNKKVKESKALSLI 124
E+ +L + KA L + + ++ I AK + LK +HEG KVK S+ L
Sbjct: 72 EEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLA 131
Query: 125 QKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKDHVIRVIRCLPESWMPLVTSIE 184
K+E+ M+ E I + + L + T + V +++R LP+ + VT+IE
Sbjct: 132 TKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIE 191
Query: 185 LTRDVENMSLEELISILKCHELKRSEMQDLRKKSIALKSKSEKAKVEKSKALQAEEEESE 244
+D+ NM ++ELI L+ EL S+ + + K++A S E EE+E +
Sbjct: 192 EAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDE-----------GEEDEYD 240
Query: 245 EASEDSGEDELTLISKRLNRIWKHRQSKFKGSGK------AKG-KYES-SGQKKSSIREV 296
+++ + + L+ K+ N++ + K + KG KY+ S K S + +
Sbjct: 241 LDTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGI 300
Query: 297 TCFECKESGHYKSDCPKLKKDKKPKKHFKTKKSLMVTFDESESE-DVDSDGEVQGLMAIV 355
C C+ GH ++CP K K +K L V ++ESE + DSD +V L+ I
Sbjct: 301 QCHGCEGYGHIIAECPTHLK--------KHRKGLSVCQSDTESEQESDSDRDVNALIGIF 352
Query: 356 KDKGAESKEAVDSDSESEGDPDSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLK 415
+ ++++ D+DSE D EL + + K +L + +LK
Sbjct: 353 E----TAEDSSDTDSEITFD----------------ELAASYRKLCIKSEKILQQEAQLK 392
Query: 416 KNLSAVSKTPSEHEKIISDLKNDNHALVNSNSVLKNQIAKLEEV-IACDASDSKHESKYE 474
K ++ + H++ IS+LK + L NS L+N ++ + D D
Sbjct: 393 KVIADLEAEKEAHKEEISELKGEVGFL---NSKLENMTKSIKMLNKGSDTLDEVLLLGKN 449
Query: 475 KSFQR---FLAKSVDRSLMASMIYGVSRNG 501
QR F KS R+ M + +R G
Sbjct: 450 AGNQRGLGFNPKSAGRTTMTEFVPAKNRTG 479
>emb|CAE05094.3| OSJNBa0009K15.14 [Oryza sativa (japonica cultivar-group)]
Length = 845
Score = 609 bits (1570), Expect = e-172
Identities = 304/570 (53%), Positives = 407/570 (71%), Gaps = 8/570 (1%)
Query: 1039 EVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTRSAFRPSEETLLSLK 1098
+VE EE++ ++ P T ++ HP + +LG+ + V+TRS ++
Sbjct: 277 QVEVEEEKAQDPPMPPRIHTA----LSKDHPIDQVLGDISKGVQTRSRVA----SICEHY 328
Query: 1099 GLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPENVHVIGTKWVFRNKLN 1158
VS +EPK +DEAL D DW+ AM EELN F++N VW+ +++P + +VIGTKWVFRNK +
Sbjct: 329 SFVSCLEPKHVDEALCDPDWMNAMHEELNNFARNKVWTFIERPRDHNVIGTKWVFRNKQD 388
Query: 1159 EKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSA 1218
E G VVRNKARLVAQ +++ EG+D+ ETFAPV RLE IR+L++F+ +I L QMDVKSA
Sbjct: 389 ENGLVVRNKARLVAQAFTRVEGLDFGETFAPVTRLEVIRILLAFASCFDIKLFQMDVKSA 448
Query: 1219 FLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRG 1278
FLNG I+E V+V QPPGFED K P+H++K K+LYGLKQAPR WYERL FLL +F G
Sbjct: 449 FLNGEIAELVFVEQPPGFEDPKNPNHIYKFSKALYGLKQAPRVWYERLRDFLLSKDFKIG 508
Query: 1279 KVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGI 1338
KVDTTLF K DD + QIYVDDIIFGS N+ CKEF +M+ EFE+SM+GEL +FL +
Sbjct: 509 KVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMISREFEISMIGELSFFLTL 568
Query: 1339 QVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRGMI 1398
Q+ Q +G ++ Q+KY K LLK+F + ++ KTPM L+ + V KLYR MI
Sbjct: 569 QIKQLKDGMFVSQTKYIKYLLKRFGLEDAKPIKTPMATNGHLDLDGGGKPVDLKLYRSMI 628
Query: 1399 GSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKL 1458
GSLLYLTASRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K+ ++KL
Sbjct: 629 GSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKSAKFKL 688
Query: 1459 SGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 1518
GY D+DYA + +RKSTSG+CQ LG +LVSW+SK+Q+ +ALSTAEAEY+SA C Q+L
Sbjct: 689 VGYSDSDYASCKVDRKSTSGSCQMLGRSLVSWSSKKQNFVALSTAEAEYVSAGSCCAQLL 748
Query: 1519 WMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLK 1578
WMK L DY I + P+ CDN +AI ++ NP+ HSR KHI++++HF+RD+V K +++
Sbjct: 749 WMKQTLLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVIS 808
Query: 1579 FVDTDHQWADIFTKPLAEDRFNFILKNLNM 1608
+ T+ Q A+IFTKPL E RF + LN+
Sbjct: 809 HIRTEDQLAEIFTKPLDETRFCKLRNELNV 838
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 608 bits (1569), Expect = e-172
Identities = 317/601 (52%), Positives = 420/601 (69%), Gaps = 25/601 (4%)
Query: 1029 NVSDKGKAPEEVEPE-----EDEPEEEAGPSNSQT-LKKSR-------------ITAAHP 1069
N+S P EVE + +DEP A PS +Q ++K + ++ HP
Sbjct: 525 NMSIGDVKPIEVEDKPSTSTQDEPSTSASPSQAQVEVEKEKAQDPPMPPRIYTALSKDHP 584
Query: 1070 KELILGNKDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQF 1129
+ +LG+ + V+TRS ++ VS +EPK +DEAL D DW+ A+ EELN F
Sbjct: 585 IDQVLGDISKGVQTRSPVA----SICEHYSFVSCLEPKHVDEALYDPDWMNAIHEELNNF 640
Query: 1130 SKNDVWSLVKKPENVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 1189
++N VW+LV++P + +VIGTKWVFRNK +E VVRNKARLVAQG++Q E +D+ ETF P
Sbjct: 641 ARNKVWTLVERPRDHNVIGTKWVFRNKQDENRLVVRNKARLVAQGFTQVEDLDFGETFGP 700
Query: 1190 VARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLK 1249
VARLEAIR+L++F+ +I L QMDVKSAFLNG I+E V+V QPPGF+D K P+HV+KL
Sbjct: 701 VARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFDDPKYPNHVYKLS 760
Query: 1250 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSAN 1309
K+LYGLKQAPRAWYERL FLL +F GKVDTTLF K DD + QIYVDDIIFGS N
Sbjct: 761 KALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTN 820
Query: 1310 QSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTV 1369
+ CKEF +MM EFEMSM+ EL +FLG+Q+ Q +GT++ Q+KY K+LLK+F + ++
Sbjct: 821 EVFCKEFGDMMSREFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKP 880
Query: 1370 AKTPMHPTCILEKEDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETH 1429
KTPM L+ ++ V KLYR MIGSLLYLTASRPDI+FSV + ARFQ+ P+E H
Sbjct: 881 IKTPMATNWHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARFQAAPKECH 940
Query: 1430 LTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVS 1489
L AVKRILRYLK ++ + L Y K ++KL GY D+DYAG + +RKSTSG+CQ LG +LVS
Sbjct: 941 LVAVKRILRYLKHSSTISLWYPKGAKFKLVGYSDSDYAGYKVDRKSTSGSCQMLGRSLVS 1000
Query: 1490 WASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI--LESNIPIYCDNTAAISLS 1547
W+SK+Q+++ALSTAEAEYISA C Q+LWMK L DY I E+ P+ C+N + I ++
Sbjct: 1001 WSSKKQNSVALSTAEAEYISAGSCCAQLLWMKQILLDYGISFTETQTPLLCNNDSTIKIA 1060
Query: 1548 KNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLN 1607
NP+ H R KHI++++HF+ D+V K +++ + T+ Q ADIFTKPL E RF + LN
Sbjct: 1061 NNPVQHFRTKHIDIRHHFLTDHVAKCDIVISHIRTEDQLADIFTKPLDETRFCKLRNELN 1120
Query: 1608 M 1608
+
Sbjct: 1121 V 1121
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.335 0.145 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,512,983,939
Number of Sequences: 2540612
Number of extensions: 102410449
Number of successful extensions: 697902
Number of sequences better than 10.0: 5527
Number of HSP's better than 10.0 without gapping: 1866
Number of HSP's successfully gapped in prelim test: 3996
Number of HSP's that attempted gapping in prelim test: 653518
Number of HSP's gapped (non-prelim): 27032
length of query: 1610
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1468
effective length of database: 502,593,490
effective search space: 737807243320
effective search space used: 737807243320
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0134.9