BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.4
(311 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC51363.1| putative polyprotein [Cicer arietinum] 101 2e-20
emb|CAC44140.1| putative polyprotein [Cicer arietinum] 98 4e-19
gb|AAW82446.1| cellular nucleic acid-binding protein [Carassius ... 80 1e-13
gb|AAH56793.1| Unknown (protein for MGC:63625) [Danio rerio] gi|... 79 1e-13
ref|XP_588441.1| PREDICTED: similar to cellular nucleic acid bin... 79 2e-13
ref|XP_591349.1| PREDICTED: similar to cellular nucleic acid bin... 79 2e-13
emb|CAA93542.1| byr3 [Schizosaccharomyces pombe] gi|254734|gb|AA... 78 4e-13
emb|CAG61002.1| unnamed protein product [Candida glabrata CBS138... 78 4e-13
emb|CAG11355.1| unnamed protein product [Tetraodon nigroviridis] 78 4e-13
ref|NP_072120.1| cellular nucleic acid binding protein 1 [Rattus... 77 5e-13
gb|AAV38417.1| zinc finger protein 9 (a cellular retroviral nucl... 77 5e-13
gb|EAK95685.1| hypothetical protein CaO19.10692 [Candida albican... 76 1e-12
gb|EAK81930.1| hypothetical protein UM00856.1 [Ustilago maydis 5... 76 1e-12
gb|AAW43322.1| conserved hypothetical protein [Cryptococcus neof... 76 1e-12
gb|AAM49965.1| LD48005p [Drosophila melanogaster] gi|23240122|gb... 76 1e-12
gb|AAP06183.1| similar to GenBank Accession Number M94390 HEXBP ... 76 1e-12
ref|NP_038521.1| cellular nucleic acid binding protein 1 [Mus mu... 76 1e-12
ref|NP_083434.1| cellular nucleic acid binding protein 2 [Mus mu... 76 1e-12
gb|EAL26521.1| GA17695-PA [Drosophila pseudoobscura] 76 1e-12
gb|AAH21176.1| Zinc finger, CCHC domain containing 13 [Homo sapi... 75 2e-12
>emb|CAC51363.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 101 bits (252), Expect = 2e-20
Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Query: 170 CYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVEPSVNTARGKHPAARGKVYTM 229
C+RCG GH+AS C+A P C NC + H+ C PKVEP VN AR P ARG++Y M
Sbjct: 75 CFRCGGEGHYASACTANVPTCHNCRKSEHMERDCTAPKVEPVVNVARATRPTARGRIYCM 134
Query: 230 DGEEAEGADELVKGERKNDGNLLTILSHSSIIRSITLVAHVTHL-FYLYCLSIDFIVITP 288
+ EE + L++ + + GN LT L S S + V L + L D +V TP
Sbjct: 135 NAEEGNPSGNLIQRDCEIAGNTLTALFDSGATHSFIAMDCVNRLKLSVSALPFDLVVSTP 194
Query: 289 NNTLFDRCSCLNYR 302
+ TL +CL+ R
Sbjct: 195 DKTLTVNSACLHCR 208
Score = 55.5 bits (132), Expect = 2e-06
Identities = 38/136 (27%), Positives = 62/136 (44%), Gaps = 13/136 (9%)
Query: 32 EAARERPQPLIEASKYQQSRLDRAGTGGPVRSGSQEY-RQLG-PYQHPKGRGFTPRSFKS 89
+A E+ + + + + SR+ +GGP R+ Q +Q+ PY P+ +
Sbjct: 3 QALVEKCREVEDMKNKRASRVGNFNSGGPSRANYQNKGKQVAKPYNRPQNN--------N 54
Query: 90 STTATPGARS--QSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAG 147
+ PG ++ + + CFRCG GHYA+AC P C NC + H+ +C +
Sbjct: 55 GGQSRPGNQNFGRQLGQVLRCFRCGGEGHYASACTANVPTCHNCRKSEHMERDCTAPKVE 114
Query: 148 PSDNKMKGKFPAIARG 163
P N + P ARG
Sbjct: 115 PVVNVARATRPT-ARG 129
>emb|CAC44140.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 97.8 bits (242), Expect = 4e-19
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 170 CYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVEPSVNTARGKHPAARGKVYTM 229
C+RCG GH+AS C+ P C NC ++GH+ C PKVE VN AR P ARG++Y +
Sbjct: 75 CFRCGGEGHYASACTTNIPICHNCRKLGHMTRDCTAPKVELVVNVARATRPTARGRIYCV 134
Query: 230 DGEEAEGADELVKGERKNDGNLLTILSHSSIIRSITLVAHVTHL-FYLYCLSIDFIVITP 288
+ EE + L++ + + GN LT L S S + V L + L D +V TP
Sbjct: 135 NAEEGNPSGNLIQRDCEIAGNTLTALFDSGATHSFIAMGCVNRLKLSVSALPFDLVVSTP 194
Query: 289 NNTLFDRCSCLNYR 302
TL +CL+ R
Sbjct: 195 AKTLTVNSACLHCR 208
Score = 55.8 bits (133), Expect = 2e-06
Identities = 33/114 (28%), Positives = 56/114 (48%), Gaps = 12/114 (10%)
Query: 32 EAARERPQPLIEASKYQQSRLDRAGTGGPVRSGSQEY-RQLG-PYQHPKGRGFTPRSFKS 89
+A E+ + + + + SR+ +GGP R+ Q +Q+ PY P+ +
Sbjct: 3 QALVEKCREVEDMKNKRASRVGNFNSGGPSRANYQNKGKQVAKPYNRPQNN--------N 54
Query: 90 STTATPGARS--QSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC 141
+ PG ++ + + CFRCG GHYA+AC P C NC ++GH+ +C
Sbjct: 55 GGQSRPGNQNFGRQMGQVLRCFRCGGEGHYASACTTNIPICHNCRKLGHMTRDC 108
>gb|AAW82446.1| cellular nucleic acid-binding protein [Carassius auratus gibelio]
Length = 163
Score = 79.7 bits (195), Expect = 1e-13
Identities = 46/129 (35%), Positives = 65/129 (49%), Gaps = 24/129 (18%)
Query: 98 RSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCK---------TFQAGP 148
R + ++ C+RCG+ GH A C C+NC++ GH++ +CK + G
Sbjct: 30 RGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQSCYNCGK 89
Query: 149 S---------DNKMK----GKFPAIARGTEKQVSCYRCGEIGHFASRCS-ATGPRCFNCH 194
+ N+ K G F I + +K V CYRCGEIGH A +CS AT C+NC
Sbjct: 90 AGHVARDCDHGNEQKCYSCGGFGHIQKLCDK-VKCYRCGEIGHVAVQCSKATEVNCYNCG 148
Query: 195 RVGHLAVVC 203
+ GHLA C
Sbjct: 149 KTGHLAREC 157
Score = 75.1 bits (183), Expect = 2e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 128 CFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSATG 187
CF C + GH NC P+ + +G+ RG K + CYRCGE GH A C T
Sbjct: 8 CFGCGRSGHWIKNC------PNAGRGRGR----GRGRGKDLFCYRCGEQGHIARDCEQTE 57
Query: 188 PRCFNCHRVGHLAVVCKKPKVE 209
C+NCHR GH++ CK+PK E
Sbjct: 58 DACYNCHRSGHISRDCKEPKKE 79
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 105 EVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGHLAVNC---KTFQAGPSDNKMKGKFPAI 160
E +C+ CGK GH A C G +C++C GH+ C K ++ G + A+
Sbjct: 81 EQSCYNCGKAGHVARDCDHGNEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHV------AV 134
Query: 161 ARGTEKQVSCYRCGEIGHFASRCS 184
+V+CY CG+ GH A C+
Sbjct: 135 QCSKATEVNCYNCGKTGHLARECT 158
>gb|AAH56793.1| Unknown (protein for MGC:63625) [Danio rerio]
gi|41054311|ref|NP_956043.1| zinc finger protein 9
[Danio rerio]
Length = 161
Score = 79.3 bits (194), Expect = 1e-13
Identities = 46/129 (35%), Positives = 65/129 (49%), Gaps = 24/129 (18%)
Query: 98 RSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCK---------TFQAGP 148
R + ++ C+RCG+ GH A C C+NC++ GH++ +CK + G
Sbjct: 28 RGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNCHRSGHISRDCKEPKKEREQCCYNCGK 87
Query: 149 SD---------NKMK----GKFPAIARGTEKQVSCYRCGEIGHFASRCS-ATGPRCFNCH 194
+ N+ K G F I + +K V CYRCGEIGH A +CS AT C+NC
Sbjct: 88 AGHVARDCDHANEQKCYSCGGFGHIQKLCDK-VKCYRCGEIGHVAVQCSKATEVNCYNCG 146
Query: 195 RVGHLAVVC 203
+ GHLA C
Sbjct: 147 KTGHLARDC 155
Score = 75.1 bits (183), Expect = 2e-12
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 128 CFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSATG 187
CF C + GH NC P+ + +G+ RG K + CYRCGE GH A C T
Sbjct: 6 CFGCGRSGHWIKNC------PNAGRGRGR----GRGRGKDLFCYRCGEQGHIARDCEQTE 55
Query: 188 PRCFNCHRVGHLAVVCKKPKVE 209
C+NCHR GH++ CK+PK E
Sbjct: 56 DACYNCHRSGHISRDCKEPKKE 77
Score = 52.0 bits (123), Expect = 2e-05
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 105 EVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGHLAVNC---KTFQAGPSDNKMKGKFPAI 160
E C+ CGK GH A C +C++C GH+ C K ++ G + A+
Sbjct: 79 EQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHIQKLCDKVKCYRCGEIGHV------AV 132
Query: 161 ARGTEKQVSCYRCGEIGHFASRCS 184
+V+CY CG+ GH A CS
Sbjct: 133 QCSKATEVNCYNCGKTGHLARDCS 156
>ref|XP_588441.1| PREDICTED: similar to cellular nucleic acid binding protein [Bos
taurus]
Length = 171
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/113 (36%), Positives = 60/113 (52%), Gaps = 5/113 (4%)
Query: 96 GARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC-KTFQAGPSDNKMK 154
GA+ S V C+RCGK GHYA C C+NC + GH+A +C + + G
Sbjct: 36 GAQCSSTTLPVICYRCGKFGHYAKDCDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTC 95
Query: 155 GKFPAIARGTEKQV--SCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKK 205
G+ +AR ++Q CY CG+ GH C T +C+ C +GH+A+ C+K
Sbjct: 96 GRPGHLARDCDRQEERKCYSCGKSGHIQKYC--TQVKCYRCGEIGHVAINCRK 146
Score = 62.8 bits (151), Expect = 1e-08
Identities = 29/82 (35%), Positives = 37/82 (44%)
Query: 128 CFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSATG 187
CF C ++GH A C A T V CYRCG+ GH+A C
Sbjct: 6 CFKCGRVGHWAPACSKGGRARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYAKDCDLLD 65
Query: 188 PRCFNCHRVGHLAVVCKKPKVE 209
C+NC + GH+A C +PK E
Sbjct: 66 DICYNCGKSGHIAKDCAEPKRE 87
Score = 60.1 bits (144), Expect = 8e-08
Identities = 31/95 (32%), Positives = 41/95 (42%), Gaps = 25/95 (26%)
Query: 91 TTATPG--ARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGP 148
T PG AR E C+ CGK+GH C +C+ C +IGH+A+NC+
Sbjct: 94 TCGRPGHLARDCDRQEERKCYSCGKSGHIQKYCTQV--KCYRCGEIGHVAINCRKMN--- 148
Query: 149 SDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRC 183
+V+CYRCGE GH C
Sbjct: 149 ------------------EVNCYRCGESGHLTREC 165
Score = 54.7 bits (130), Expect = 3e-06
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 48/138 (34%)
Query: 108 CFRCGKNGHYANACL------GQGPR----------------CFNCNQIGHLAVNCKTFQ 145
CF+CG+ GH+A AC G+G R C+ C + GH A +C
Sbjct: 6 CFKCGRVGHWAPACSKGGRARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYAKDCDLLD 65
Query: 146 AGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSAT---GPRC-FNCHRVGHLAV 201
CY CG+ GH A C+ G RC + C R GHLA
Sbjct: 66 D----------------------ICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLAR 103
Query: 202 VCKKPKVEPSVNTARGKH 219
C + + + + H
Sbjct: 104 DCDRQEERKCYSCGKSGH 121
>ref|XP_591349.1| PREDICTED: similar to cellular nucleic acid binding protein [Bos
taurus]
Length = 171
Score = 78.6 bits (192), Expect = 2e-13
Identities = 41/113 (36%), Positives = 60/113 (52%), Gaps = 5/113 (4%)
Query: 96 GARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC-KTFQAGPSDNKMK 154
GA+ S V C+RCGK GHYA C C+NC + GH+A +C + + G
Sbjct: 36 GAQCSSTTLPVICYRCGKFGHYAKDCDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTC 95
Query: 155 GKFPAIARGTEKQV--SCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKK 205
G+ +AR ++Q CY CG+ GH C T +C+ C +GH+A+ C+K
Sbjct: 96 GRPGHLARDCDRQEERKCYSCGKSGHIQKYC--TQVKCYRCGEIGHVAINCRK 146
Score = 64.7 bits (156), Expect = 3e-09
Identities = 37/103 (35%), Positives = 47/103 (44%), Gaps = 22/103 (21%)
Query: 108 CFRCGKNGHYANACL-GQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEK 166
CF+CG+ GH+A AC G G R GH A C + T
Sbjct: 6 CFKCGRVGHWAPACSKGGGARGRGARGRGHGA-QCSS--------------------TTL 44
Query: 167 QVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVE 209
V CYRCG+ GH+A C C+NC + GH+A C +PK E
Sbjct: 45 PVICYRCGKFGHYAKDCDLLDDICYNCGKSGHIAKDCAEPKRE 87
Score = 60.1 bits (144), Expect = 8e-08
Identities = 31/95 (32%), Positives = 41/95 (42%), Gaps = 25/95 (26%)
Query: 91 TTATPG--ARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGP 148
T PG AR E C+ CGK+GH C +C+ C +IGH+A+NC+
Sbjct: 94 TCGRPGHLARDCDRQEERKCYSCGKSGHIQKYCTQV--KCYRCGEIGHVAINCRKMN--- 148
Query: 149 SDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRC 183
+V+CYRCGE GH C
Sbjct: 149 ------------------EVNCYRCGESGHLTREC 165
>emb|CAA93542.1| byr3 [Schizosaccharomyces pombe] gi|254734|gb|AAB23116.1| human
cellular nucleic acid binding protein (CNBP) homolog
[Schizosaccharomyces pombe] gi|19114592|ref|NP_593680.1|
hypothetical protein SPAC13D6.02c [Schizosaccharomyces
pombe 972h-] gi|543908|sp|P36627|BYR3_SCHPO Cellular
nucleic acid binding protein homolog
Length = 179
Score = 77.8 bits (190), Expect = 4e-13
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 87 FKSSTTATPGARSQSAHPEVTCFRCGKNGHYANACLG-----QGPRCFNCNQIGHLAVNC 141
+ + T + E TC+ CG GH C QG C+ C ++GH+A +C
Sbjct: 39 YNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Query: 142 KT------FQAGPSDNKMK----GKFPAIARGTEKQVSCYRCGEIGHFASRC--SATGPR 189
+T + G + M G + AR V CY CG+IGH + C ++ G
Sbjct: 99 RTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQL 158
Query: 190 CFNCHRVGHLAVVCKKPKVE 209
C+ C++ GH+AV C P +E
Sbjct: 159 CYKCNQPGHIAVNCTSPVIE 178
Score = 73.2 bits (178), Expect = 9e-12
Identities = 36/110 (32%), Positives = 50/110 (44%), Gaps = 26/110 (23%)
Query: 100 QSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPA 159
Q+ P C+ CG+NGH A C +G C+NCNQ GH A C
Sbjct: 11 QTTRPGPRCYNCGENGHQARECT-KGSICYNCNQTGHKASECTE---------------- 53
Query: 160 IARGTEKQVSCYRCGEIGHFASRCSAT-----GPRCFNCHRVGHLAVVCK 204
+++ +CY CG GH C ++ G C+ C RVGH+A C+
Sbjct: 54 ----PQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCR 99
Score = 48.5 bits (114), Expect = 2e-04
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 158 PAIARGTEKQVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVE 209
P + + T CY CGE GH A C+ G C+NC++ GH A C +P+ E
Sbjct: 7 PTVPQTTRPGPRCYNCGENGHQARECT-KGSICYNCNQTGHKASECTEPQQE 57
>emb|CAG61002.1| unnamed protein product [Candida glabrata CBS138]
gi|50291237|ref|XP_448051.1| unnamed protein product
[Candida glabrata]
Length = 155
Score = 77.8 bits (190), Expect = 4e-13
Identities = 38/96 (39%), Positives = 51/96 (52%), Gaps = 14/96 (14%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQ 167
C+ CG+ GH + C Q RCFNCNQ GH++ C KG+F A + K
Sbjct: 49 CYNCGETGHVKSECSIQ--RCFNCNQTGHVSRECP--------EPRKGRFGAAS----KN 94
Query: 168 VSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVC 203
VSCY+CG H A C T +C++C R GH++ C
Sbjct: 95 VSCYKCGGPNHVARDCMQTDTKCYSCGRFGHVSRDC 130
Score = 70.9 bits (172), Expect = 5e-11
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 21/100 (21%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQ 167
C+ CGK GH A+ C + C+NCNQ GH+ C + T +
Sbjct: 6 CYVCGKIGHLADDCDSER-LCYNCNQPGHVQSECTMPR------------------TVEH 46
Query: 168 VSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPK 207
CY CGE GH S CS RCFNC++ GH++ C +P+
Sbjct: 47 KQCYNCGETGHVKSECSIQ--RCFNCNQTGHVSRECPEPR 84
Score = 50.1 bits (118), Expect = 8e-05
Identities = 23/86 (26%), Positives = 38/86 (43%), Gaps = 20/86 (23%)
Query: 98 RSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKF 157
R +A V+C++CG H A C+ +C++C + GH++ +C GP++
Sbjct: 87 RFGAASKNVSCYKCGGPNHVARDCMQTDTKCYSCGRFGHVSRDCPN---GPNEK------ 137
Query: 158 PAIARGTEKQVSCYRCGEIGHFASRC 183
CY C E GH + C
Sbjct: 138 -----------VCYNCNETGHISRDC 152
Score = 42.7 bits (99), Expect = 0.014
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 167 QVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPK 207
Q +CY CG+IGH A C + C+NC++ GH+ C P+
Sbjct: 3 QKACYVCGKIGHLADDCDSE-RLCYNCNQPGHVQSECTMPR 42
>emb|CAG11355.1| unnamed protein product [Tetraodon nigroviridis]
Length = 167
Score = 77.8 bits (190), Expect = 4e-13
Identities = 35/88 (39%), Positives = 49/88 (54%), Gaps = 7/88 (7%)
Query: 122 LGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFAS 181
LG CF C + GH NC P+ + ++G+ P RG K++ CYRCG+ GH
Sbjct: 3 LGGNSDCFGCGRPGHWVKNC------PTSSGLRGRGPR-GRGRGKELFCYRCGDQGHMVK 55
Query: 182 RCSATGPRCFNCHRVGHLAVVCKKPKVE 209
C T C+NCH+ GH++ CK+PK E
Sbjct: 56 DCDQTEDSCYNCHKSGHISRDCKEPKRE 83
Score = 73.9 bits (180), Expect = 5e-12
Identities = 35/113 (30%), Positives = 52/113 (45%), Gaps = 19/113 (16%)
Query: 96 GARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKG 155
G R + E+ C+RCG GH C C+NC++ GH++ +CK +
Sbjct: 32 GPRGRGRGKELFCYRCGDQGHMVKDCDQTEDSCYNCHKSGHISRDCKEPK---------- 81
Query: 156 KFPAIARGTEKQVSCYRCGEIGHFASRCS-ATGPRCFNCHRVGHLAVVCKKPK 207
E++ CY CG+ GH A C A +CF C +GH+ +C K K
Sbjct: 82 --------REREQQCYNCGKAGHMARECDHANEQKCFTCGTLGHIQKLCDKVK 126
Score = 51.2 bits (121), Expect = 4e-05
Identities = 26/84 (30%), Positives = 38/84 (44%), Gaps = 10/84 (11%)
Query: 105 EVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGHLAVNC---KTFQAGPSDNKMKGKFPAI 160
E C+ CGK GH A C +CF C +GH+ C K ++ G + A+
Sbjct: 85 EQQCYNCGKAGHMARECDHANEQKCFTCGTLGHIQKLCDKVKCYRCGGIGHV------AL 138
Query: 161 ARGTEKQVSCYRCGEIGHFASRCS 184
+ +CY CG+ GH A C+
Sbjct: 139 QCSKASETTCYNCGKAGHVAKDCT 162
>ref|NP_072120.1| cellular nucleic acid binding protein 1 [Rattus norvegicus]
gi|62205335|gb|AAH93058.1| Zinc finger protein 9 [Homo
sapiens] gi|40738013|gb|AAR89462.1| zinc finger protein
9 [Homo sapiens] gi|40738017|gb|AAR89464.1| cellular
nucleic acid binding protein [Rattus norvegicus]
gi|67970964|dbj|BAE01824.1| unnamed protein product
[Macaca fascicularis] gi|8650478|gb|AAF78224.1| cellular
nucleic acid binding protein [Rattus norvegicus]
gi|55732400|emb|CAH92901.1| hypothetical protein [Pongo
pygmaeus] gi|38328236|gb|AAH62225.1| Cellular nucleic
acid binding protein 1 [Rattus norvegicus]
gi|4827071|ref|NP_003409.1| zinc finger protein 9 [Homo
sapiens] gi|50401852|sp|P62633|CNBP_HUMAN Cellular
nucleic acid binding protein (CNBP) (Zinc finger protein
9) gi|50401851|sp|P62634|CNBP_RAT Cellular nucleic acid
binding protein (CNBP) (Zinc finger protein 9)
gi|26344578|dbj|BAC35938.1| unnamed protein product [Mus
musculus] gi|790571|gb|AAA91782.1| nucleic acid binding
protein gi|809511|dbj|BAA08212.1| Cellular Nucleic Acid
Binding Protein [Rattus norvegicus]
gi|643576|gb|AAA61975.1| SRE-binding protein
Length = 177
Score = 77.4 bits (189), Expect = 5e-13
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 78 KGRGFTPRSFKSSTTATPGARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHL 137
+GRG R + T+ G + S+ C+RCG++GH A C Q C+NC + GH+
Sbjct: 25 RGRGMRSRG-RGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHI 83
Query: 138 AVNCK---------TFQAGPSDNKMK-------------GKFPAIARGTEKQVSCYRCGE 175
A +CK + G + + G+F I + K V CYRCGE
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGE 142
Query: 176 IGHFASRCSATGP-RCFNCHRVGHLAVVC 203
GH A CS T C+ C GHLA C
Sbjct: 143 TGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 65.1 bits (157), Expect = 3e-09
Identities = 36/102 (35%), Positives = 45/102 (43%), Gaps = 14/102 (13%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQ 167
CF+CG++GH+A C G R G F + + P I
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGR-----GGFTSDRGFQFVSSSLPDI------- 53
Query: 168 VSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVE 209
CYRCGE GH A C C+NC R GH+A CK+PK E
Sbjct: 54 --CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRE 93
Score = 59.3 bits (142), Expect = 1e-07
Identities = 29/84 (34%), Positives = 43/84 (50%), Gaps = 10/84 (11%)
Query: 105 EVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGHLAVNC---KTFQAGPSDNKMKGKFPAI 160
E C+ CGK GH A C +C++C + GH+ +C K ++ G + + AI
Sbjct: 95 EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHV------AI 148
Query: 161 ARGTEKQVSCYRCGEIGHFASRCS 184
+V+CYRCGE GH A C+
Sbjct: 149 NCSKTSEVNCYRCGESGHLARECT 172
>gb|AAV38417.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [synthetic construct]
gi|61368820|gb|AAX43242.1| zinc finger protein 9
[synthetic construct]
Length = 178
Score = 77.4 bits (189), Expect = 5e-13
Identities = 49/149 (32%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 78 KGRGFTPRSFKSSTTATPGARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHL 137
+GRG R + T+ G + S+ C+RCG++GH A C Q C+NC + GH+
Sbjct: 25 RGRGMRSRG-RGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHI 83
Query: 138 AVNCK---------TFQAGPSDNKMK-------------GKFPAIARGTEKQVSCYRCGE 175
A +CK + G + + G+F I + K V CYRCGE
Sbjct: 84 AKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGE 142
Query: 176 IGHFASRCSATGP-RCFNCHRVGHLAVVC 203
GH A CS T C+ C GHLA C
Sbjct: 143 TGHVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 65.1 bits (157), Expect = 3e-09
Identities = 36/102 (35%), Positives = 45/102 (43%), Gaps = 14/102 (13%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQ 167
CF+CG++GH+A C G R G F + + P I
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGR-----GGFTSDRGFQFVSSSLPDI------- 53
Query: 168 VSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVE 209
CYRCGE GH A C C+NC R GH+A CK+PK E
Sbjct: 54 --CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRE 93
Score = 59.3 bits (142), Expect = 1e-07
Identities = 29/84 (34%), Positives = 43/84 (50%), Gaps = 10/84 (11%)
Query: 105 EVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGHLAVNC---KTFQAGPSDNKMKGKFPAI 160
E C+ CGK GH A C +C++C + GH+ +C K ++ G + + AI
Sbjct: 95 EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHV------AI 148
Query: 161 ARGTEKQVSCYRCGEIGHFASRCS 184
+V+CYRCGE GH A C+
Sbjct: 149 NCSKTSEVNCYRCGESGHLARECT 172
>gb|EAK95685.1| hypothetical protein CaO19.10692 [Candida albicans SC5314]
gi|46436181|gb|EAK95548.1| hypothetical protein
CaO19.3182 [Candida albicans SC5314]
Length = 175
Score = 76.3 bits (186), Expect = 1e-12
Identities = 35/98 (35%), Positives = 52/98 (52%), Gaps = 6/98 (6%)
Query: 108 CFRCGKNGHYANAC--LGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTE 165
C+ CG GH C QG +C+NC Q GH++ NC + + ++N K P+ G
Sbjct: 53 CYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNCDSAPSS-TNNAPSFKRPS---GRA 108
Query: 166 KQVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVC 203
+CY+CG HFA C A +C+ C +VGH++ C
Sbjct: 109 SGTTCYKCGGPNHFARDCQANTVKCYACGKVGHISKDC 146
Score = 71.2 bits (173), Expect = 4e-11
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 107 TCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEK 166
TC++CG+ GH A+ C + C+NC++ GH + +C P + T K
Sbjct: 8 TCYKCGEVGHVADDCQQEERLCYNCHKPGHESNDC----------------PDPKQNTAK 51
Query: 167 QVSCYRCGEIGHFASRC--SATGPRCFNCHRVGHLAVVCKKPKVEPSVNTARGKHPAAR 223
Q CY CG++GH + C A G +C+NC + GH++ C + N K P+ R
Sbjct: 52 Q--CYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNCDSAPSSTN-NAPSFKRPSGR 107
Score = 58.9 bits (141), Expect = 2e-07
Identities = 30/101 (29%), Positives = 47/101 (45%), Gaps = 16/101 (15%)
Query: 86 SFKSSTTATPGARSQSAHPE-VTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTF 144
S SST P + S TC++CG H+A C +C+ C ++GH++ +C +
Sbjct: 90 SAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQANTVKCYACGKVGHISKDCHS- 148
Query: 145 QAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSA 185
AG S+ K +CY CG+ GH + C+A
Sbjct: 149 SAGGSNFSAK--------------TCYNCGKSGHISKECTA 175
Score = 52.0 bits (123), Expect = 2e-05
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 169 SCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVEPSVNTARGKHPAAR-GKVY 227
+CY+CGE+GH A C C+NCH+ GH + C PK NTA+ + G +
Sbjct: 8 TCYKCGEVGHVADDCQQEERLCYNCHKPGHESNDCPDPK----QNTAKQCYSCGDVGHIQ 63
Query: 228 TMDGEEAEGA 237
T +A+GA
Sbjct: 64 TECPNQAQGA 73
>gb|EAK81930.1| hypothetical protein UM00856.1 [Ustilago maydis 521]
gi|49068364|ref|XP_398471.1| hypothetical protein
UM00856.1 [Ustilago maydis 521]
Length = 189
Score = 76.3 bits (186), Expect = 1e-12
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 107 TCFRCGKNGHYANACL--------GQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFP 158
TC++C + GH + C G G C+ C Q GH+A C T AG S +G F
Sbjct: 61 TCYKCSETGHISRECPTNPAPAAGGPGGECYKCGQHGHIARACPT--AGGSS---RGGFG 115
Query: 159 AIARGTEKQVSCYRCGEIGHFASRCS------ATGPRCFNCHRVGHLAVVCKKPKVE 209
G SCY CG +GH + C+ A G RC+NC+ GH++ C KP+ +
Sbjct: 116 GARSGGR---SCYNCGGVGHLSRECTSPAGAAAGGQRCYNCNESGHISRECPKPQTK 169
Score = 55.5 bits (132), Expect = 2e-06
Identities = 38/117 (32%), Positives = 47/117 (39%), Gaps = 27/117 (23%)
Query: 115 GHYANACLGQG-PRCFNCNQIGHLAVNC----------KTFQAGPSDNKMKGKFPAIARG 163
GH A AC G P C+NC Q GH++ C K + G + PA A G
Sbjct: 26 GHNAAACPTAGNPSCYNCGQQGHISSQCGMEAQPKTCYKCSETGHISRECPTN-PAPAAG 84
Query: 164 TEKQVSCYRCGEIGHFASRCSAT--------------GPRCFNCHRVGHLAVVCKKP 206
CY+CG+ GH A C G C+NC VGHL+ C P
Sbjct: 85 GPGG-ECYKCGQHGHIARACPTAGGSSRGGFGGARSGGRSCYNCGGVGHLSRECTSP 140
Score = 52.8 bits (125), Expect = 1e-05
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 104 PEVTCFRCGKNGHYANAC--------------LGQGPRCFNCNQIGHLAVNCKTFQAGPS 149
P C++CG++GH A AC G C+NC +GHL+ C T AG +
Sbjct: 86 PGGECYKCGQHGHIARACPTAGGSSRGGFGGARSGGRSCYNCGGVGHLSREC-TSPAGAA 144
Query: 150 DNKMK----GKFPAIARGTEKQV--SCYRCGEIGHFASRC 183
+ + I+R K SCYRCG+ GH ++ C
Sbjct: 145 AGGQRCYNCNESGHISRECPKPQTKSCYRCGDEGHLSAAC 184
Score = 36.6 bits (83), Expect = 0.97
Identities = 27/94 (28%), Positives = 35/94 (36%), Gaps = 16/94 (17%)
Query: 54 RAGTGGPVRSGSQEYRQLGPYQHPKGRGFTPRSFKSSTTATPGARSQSAHPEVTCFRCGK 113
R G GG RSG + G G G R S A G + C+ C +
Sbjct: 111 RGGFGG-ARSGGRSCYNCG------GVGHLSRECTSPAGAAAGGQR--------CYNCNE 155
Query: 114 NGHYANAC-LGQGPRCFNCNQIGHLAVNCKTFQA 146
+GH + C Q C+ C GHL+ C A
Sbjct: 156 SGHISRECPKPQTKSCYRCGDEGHLSAACPQIAA 189
>gb|AAW43322.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21] gi|58266946|ref|XP_570629.1| conserved
hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 287
Score = 76.3 bits (186), Expect = 1e-12
Identities = 46/135 (34%), Positives = 57/135 (42%), Gaps = 33/135 (24%)
Query: 78 KGRGFTPRSFKSSTTATPGARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHL 137
+GR T F ++ A PG+R CF+CG GH A C G C+NC + GH
Sbjct: 96 RGRSKTKTMFGAA--AVPGSRQG-------CFKCGNLGHIAENCQAPGRLCYNCREPGHE 146
Query: 138 AVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSA------TGPRCF 191
+ NC P GK CY CG +GH S C + G +CF
Sbjct: 147 STNC------PQPRSTDGK------------QCYACGGVGHVKSDCPSMRGAFGPGQKCF 188
Query: 192 NCHRVGHLAVVCKKP 206
C R GHLA C P
Sbjct: 189 KCGRPGHLARECTVP 203
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/125 (29%), Positives = 48/125 (37%), Gaps = 23/125 (18%)
Query: 108 CFRCGKNGHYANAC------LGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIA 161
C+ CG GH + C G G +CF C + GHLA C T + +G F
Sbjct: 161 CYACGGVGHVKSDCPSMRGAFGPGQKCFKCGRPGHLAREC-TVPGFVGAFRGRGGFGGAF 219
Query: 162 RGTEKQ--------VSCYRCGEIGHFASRCSA--------TGPRCFNCHRVGHLAVVCKK 205
G + V CYRC H A C A +C+ C GH+A C +
Sbjct: 220 GGRPRPPINPDGTPVKCYRCNGENHLARDCLAPRDEAAILASKKCYKCQETGHIARDCTQ 279
Query: 206 PKVEP 210
V P
Sbjct: 280 ENVSP 284
Score = 51.2 bits (121), Expect = 4e-05
Identities = 22/57 (38%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Query: 151 NKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPK 207
+K K F A A +Q C++CG +GH A C A G C+NC GH + C +P+
Sbjct: 99 SKTKTMFGAAAVPGSRQ-GCFKCGNLGHIAENCQAPGRLCYNCREPGHESTNCPQPR 154
>gb|AAM49965.1| LD48005p [Drosophila melanogaster] gi|23240122|gb|AAN16117.1|
CG3800-PA [Drosophila melanogaster]
gi|24658883|ref|NP_611739.1| CG3800-PA [Drosophila
melanogaster] gi|18447272|gb|AAL68216.1| GM14667p
[Drosophila melanogaster]
Length = 165
Score = 75.9 bits (185), Expect = 1e-12
Identities = 31/102 (30%), Positives = 51/102 (49%), Gaps = 6/102 (5%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC------KTFQAGPSDNKMKGKFPAIA 161
C++C + GH+A AC + RC+ CN IGH++ +C ++ + + ++ A+
Sbjct: 57 CYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVN 116
Query: 162 RGTEKQVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVC 203
VSCY+C GH + C T C+ C + GHL C
Sbjct: 117 ERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
Score = 56.2 bits (134), Expect = 1e-06
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 53/128 (41%)
Query: 107 TCFRCGKNGHYANACL---GQGP---------------------------RCFNCNQIGH 136
TC++C + GH+A C G GP +C+ CNQ GH
Sbjct: 6 TCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFGH 65
Query: 137 LAVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCS-ATGPRCFNCHR 195
A C E+ CYRC IGH + C+ A P C+ C++
Sbjct: 66 FARAC----------------------PEEAERCYRCNGIGHISKDCTQADNPTCYRCNK 103
Query: 196 VGHLAVVC 203
GH C
Sbjct: 104 TGHWVRNC 111
Score = 50.8 bits (120), Expect = 5e-05
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 29/90 (32%)
Query: 107 TCFRCGKNGHYANAC----LGQGP---RCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPA 159
TC+RC K GH+ C +GP C+ CN+ GH++ NC
Sbjct: 97 TCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNC------------------ 138
Query: 160 IARGTEKQVSCYRCGEIGHFASRCSATGPR 189
E +CY CG+ GH C G R
Sbjct: 139 ----PETSKTCYGCGKSGHLRRECDEKGGR 164
Score = 39.7 bits (91), Expect = 0.11
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 95 PGARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC 141
P A ++ V+C++C + GH + C C+ C + GHL C
Sbjct: 112 PEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
>gb|AAP06183.1| similar to GenBank Accession Number M94390 HEXBP DNA binding
protein in Leishmania major [Schistosoma japonicum]
Length = 192
Score = 75.9 bits (185), Expect = 1e-12
Identities = 39/115 (33%), Positives = 52/115 (44%), Gaps = 35/115 (30%)
Query: 108 CFRCGKNGHYANACL----------------GQGPRCFNCNQIGHLAVNCKTFQAGPSDN 151
CF CG GH+A C G G RC+NC Q GH+ NC PS+N
Sbjct: 90 CFNCGGVGHFARECTNDGQRGDSGYNNGGGGGGGGRCYNCGQSGHVVRNC------PSNN 143
Query: 152 KMKGKFPAIARGTEKQVSCYRCGEIGHFASRCS---ATGPRCFNCHRVGHLAVVC 203
R ++ CYRC + GH+A C+ +GP+C+ C GH+A C
Sbjct: 144 ----------RNDMSEILCYRCNKYGHYAKECTESGGSGPQCYKCRGYGHIASRC 188
Score = 53.1 bits (126), Expect = 1e-05
Identities = 38/141 (26%), Positives = 51/141 (35%), Gaps = 51/141 (36%)
Query: 108 CFRCGKNGHYANACLGQ--------------------------GPR--CFNCNQIGHLAV 139
CF+CG+ GH+A C Q G R CFNC + H A
Sbjct: 5 CFKCGREGHFARDCQAQSRGGRGGGGGYRGRGGGGGRDRDNNDGRRDGCFNCGGLDHYAR 64
Query: 140 NCKTFQAGPSD-NKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCS-------------- 184
+C P+D G G + C+ CG +GHFA C+
Sbjct: 65 DC------PNDRGHYGGGGGGGYGGYGSRDKCFNCGGVGHFARECTNDGQRGDSGYNNGG 118
Query: 185 --ATGPRCFNCHRVGHLAVVC 203
G RC+NC + GH+ C
Sbjct: 119 GGGGGGRCYNCGQSGHVVRNC 139
Score = 50.4 bits (119), Expect = 6e-05
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 3/40 (7%)
Query: 105 EVTCFRCGKNGHYANACL---GQGPRCFNCNQIGHLAVNC 141
E+ C+RC K GHYA C G GP+C+ C GH+A C
Sbjct: 149 EILCYRCNKYGHYAKECTESGGSGPQCYKCRGYGHIASRC 188
>ref|NP_038521.1| cellular nucleic acid binding protein 1 [Mus musculus]
gi|40738015|gb|AAR89463.1| cellular nucleic acid binding
protein [Mus musculus] gi|54696094|gb|AAV38419.1| zinc
finger protein 9 (a cellular retroviral nucleic acid
binding protein) [Homo sapiens]
gi|30059133|gb|AAO31613.1| cellular nucleic acid binding
protein [Mus musculus] gi|37194897|gb|AAH58723.1|
Cellular nucleic acid binding protein 1 [Mus musculus]
gi|50403746|sp|P53996|CNBP_MOUSE Cellular nucleic acid
binding protein (CNBP) (Zinc finger protein 9)
gi|854675|gb|AAB60490.1| cellular nucleic acid binding
protein gi|2137214|pir||I49259 cellular nucleic acid
binding protein - mouse
Length = 178
Score = 75.9 bits (185), Expect = 1e-12
Identities = 49/150 (32%), Positives = 68/150 (44%), Gaps = 26/150 (17%)
Query: 78 KGRGFTPRSFKSSTTATPGARSQSAHPEVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGH 136
+GRG R + T+ G + S+ C+RCG++GH A C L + C+NC + GH
Sbjct: 25 RGRGMRSRG-RGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGH 83
Query: 137 LAVNCKT---------FQAGPSDNKMK-------------GKFPAIARGTEKQVSCYRCG 174
+A +CK + G + + G+F I + K V CYRCG
Sbjct: 84 IAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCG 142
Query: 175 EIGHFASRCSATGP-RCFNCHRVGHLAVVC 203
E GH A CS T C+ C GHLA C
Sbjct: 143 ETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 60.8 bits (146), Expect = 5e-08
Identities = 36/103 (34%), Positives = 45/103 (42%), Gaps = 15/103 (14%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQ 167
CF+CG++GH+A C G R G F + + P I
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGR-----GGFTSDRGFQFVSSSLPDI------- 53
Query: 168 VSCYRCGEIGHFASRCS-ATGPRCFNCHRVGHLAVVCKKPKVE 209
CYRCGE GH A C C+NC R GH+A CK+PK E
Sbjct: 54 --CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKRE 94
Score = 59.3 bits (142), Expect = 1e-07
Identities = 29/84 (34%), Positives = 43/84 (50%), Gaps = 10/84 (11%)
Query: 105 EVTCFRCGKNGHYANAC-LGQGPRCFNCNQIGHLAVNC---KTFQAGPSDNKMKGKFPAI 160
E C+ CGK GH A C +C++C + GH+ +C K ++ G + + AI
Sbjct: 96 EQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHV------AI 149
Query: 161 ARGTEKQVSCYRCGEIGHFASRCS 184
+V+CYRCGE GH A C+
Sbjct: 150 NCSKTSEVNCYRCGESGHLARECT 173
>ref|NP_083434.1| cellular nucleic acid binding protein 2 [Mus musculus]
gi|21425582|emb|CAD33940.1| cellular nucleic acid
binding-like protein [Mus musculus]
gi|12854262|dbj|BAB29977.1| unnamed protein product [Mus
musculus]
Length = 170
Score = 75.9 bits (185), Expect = 1e-12
Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 77 PKG--RGFTPRSFKSSTTATPGARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQI 134
PKG RG T R T G + +A+ C+RCG+ GHYA C C+NC +
Sbjct: 20 PKGGTRGRTARG------RTRGPQCSTANQSDVCYRCGETGHYAKDCDLLQDTCYNCGRR 73
Query: 135 GHLAVNCKTFQAGPSDNKMKGKFPA-IARGTEKQ--VSCYRCGEIGHFASRCSATGPRCF 191
GH+A +C + P +AR +Q CY CGE GH C T +C+
Sbjct: 74 GHIAKDCTQAKREREQCCYICSQPGHLARDCNRQEEQKCYTCGEFGHIQKDC--TQIKCY 131
Query: 192 NCHRVGHLAVVCKK 205
C GH+AV C K
Sbjct: 132 RCGENGHMAVNCSK 145
Score = 61.2 bits (147), Expect = 4e-08
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 107 TCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEK 166
+CF+CG +GH+A C G R G A + + + P + +
Sbjct: 5 SCFKCGHSGHWARECPKGGTR-------GRTA-------------RGRTRGPQCSTANQS 44
Query: 167 QVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPKVE 209
V CYRCGE GH+A C C+NC R GH+A C + K E
Sbjct: 45 DV-CYRCGETGHYAKDCDLLQDTCYNCGRRGHIAKDCTQAKRE 86
>gb|EAL26521.1| GA17695-PA [Drosophila pseudoobscura]
Length = 159
Score = 75.9 bits (185), Expect = 1e-12
Identities = 31/102 (30%), Positives = 51/102 (49%), Gaps = 6/102 (5%)
Query: 108 CFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC------KTFQAGPSDNKMKGKFPAIA 161
C++C + GH+A AC + RC+ CN IGH++ +C ++ + + ++ A+
Sbjct: 51 CYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVN 110
Query: 162 RGTEKQVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVC 203
VSCY+C GH + C T C+ C + GHL C
Sbjct: 111 ERGPANVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 152
Score = 58.9 bits (141), Expect = 2e-07
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 128 CFNCNQIGHLAVNCK-----TFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASR 182
C+ CN+ GH A +C GP G + R EK CY+C + GHFA
Sbjct: 7 CYKCNRPGHFARDCSLGGGGPGGGGPGGGMRGGDGGGMRRNREK---CYKCNQFGHFARA 63
Query: 183 CSATGPRCFNCHRVGHLAVVC 203
C RC+ C+ +GH++ C
Sbjct: 64 CPEEAERCYRCNGIGHISKDC 84
Score = 58.5 bits (140), Expect = 2e-07
Identities = 34/122 (27%), Positives = 46/122 (36%), Gaps = 47/122 (38%)
Query: 107 TCFRCGKNGHYANACL--GQGP----------------------RCFNCNQIGHLAVNCK 142
TC++C + GH+A C G GP +C+ CNQ GH A C
Sbjct: 6 TCYKCNRPGHFARDCSLGGGGPGGGGPGGGMRGGDGGGMRRNREKCYKCNQFGHFARAC- 64
Query: 143 TFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCS-ATGPRCFNCHRVGHLAV 201
E+ CYRC IGH + C+ A P C+ C++ GH
Sbjct: 65 ---------------------PEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVR 103
Query: 202 VC 203
C
Sbjct: 104 NC 105
Score = 39.7 bits (91), Expect = 0.11
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 95 PGARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNC 141
P A ++ V+C++C + GH + C C+ C + GHL C
Sbjct: 106 PEAVNERGPANVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 152
>gb|AAH21176.1| Zinc finger, CCHC domain containing 13 [Homo sapiens]
gi|42558260|ref|NP_976048.1| zinc finger, CCHC domain
containing 13 [Homo sapiens]
Length = 166
Score = 75.5 bits (184), Expect = 2e-12
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 13/119 (10%)
Query: 96 GARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMK- 154
G++ S TC+ CG++G A C+ G C+NC + GH+A +CK P + +
Sbjct: 35 GSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCK----DPKRERRQH 90
Query: 155 ----GKFPAIAR--GTEKQVSCYRCGEIGHFASRCSATGPRCFNCHRVGHLAVVCKKPK 207
G+ +AR +K+ CY CG++GH C+ +C+ C +GH+A+ C K +
Sbjct: 91 CYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQV--KCYRCGEIGHVAINCSKAR 147
Score = 55.1 bits (131), Expect = 3e-06
Identities = 31/81 (38%), Positives = 35/81 (42%), Gaps = 1/81 (1%)
Query: 129 FNCNQIGHLAVNCKTFQAGPSDNKMKGKFPAIARGTEKQVSCYRCGEIGHFASRCSATGP 188
F C GH A C AG G+ T +CY CGE G A C G
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCG-STTLSYTCYCCGESGRNAKNCVLLGN 65
Query: 189 RCFNCHRVGHLAVVCKKPKVE 209
C+NC R GH+A CK PK E
Sbjct: 66 ICYNCGRSGHIAKDCKDPKRE 86
Score = 45.8 bits (107), Expect = 0.002
Identities = 33/127 (25%), Positives = 47/127 (36%), Gaps = 29/127 (22%)
Query: 109 FRCGKNGHYANACL------------GQGPRCFNCNQIGHLAVNCKTFQAGPSDNKMKGK 156
F CG +GH+A C G+G +C G ++ + G S K
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQC------GSTTLSYTCYCCGESGRNAKN- 59
Query: 157 FPAIARGTEKQVSCYRCGEIGHFASRCS----ATGPRCFNCHRVGHLAVVCKKPKVEPSV 212
+ G CY CG GH A C C+ C R+GHLA C + K +
Sbjct: 60 --CVLLGN----ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCY 113
Query: 213 NTARGKH 219
+ + H
Sbjct: 114 SCGKLGH 120
Score = 44.7 bits (104), Expect = 0.004
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 97 ARSQSAHPEVTCFRCGKNGHYANACLGQGPRCFNCNQIGHLAVNCKTFQAG 147
AR E C+ CGK GH C +C+ C +IGH+A+NC + G
Sbjct: 101 ARDCDRQKEQKCYSCGKLGHIQKDCAQV--KCYRCGEIGHVAINCSKARPG 149
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,200,108
Number of Sequences: 2540612
Number of extensions: 23622989
Number of successful extensions: 94131
Number of sequences better than 10.0: 4038
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 3752
Number of HSP's that attempted gapping in prelim test: 74320
Number of HSP's gapped (non-prelim): 17382
length of query: 311
length of database: 863,360,394
effective HSP length: 127
effective length of query: 184
effective length of database: 540,702,670
effective search space: 99489291280
effective search space used: 99489291280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0134.4