BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.24
(366 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 239 1e-61
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 239 1e-61
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 239 1e-61
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 239 1e-61
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 237 4e-61
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 234 2e-60
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 230 6e-59
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 229 1e-58
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 228 2e-58
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 228 2e-58
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 226 1e-57
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 221 2e-56
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 221 3e-56
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 219 1e-55
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 219 1e-55
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 219 1e-55
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 218 2e-55
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 218 3e-55
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 218 3e-55
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 216 9e-55
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 239 bits (610), Expect = 1e-61
Identities = 135/370 (36%), Positives = 206/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L R+ L ++ +SQ+AFI GR + D+V++A+EV+ + R K M K D
Sbjct: 901 KCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVS 960
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL MR GFC KWIGWI A ++S SVL+NGSP RG+RQGDP
Sbjct: 961 KAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDP 1020
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ + LS L+ +G ++G I+ LQF DD+LF +A+ +N
Sbjct: 1021 LSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQA 1080
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC-FARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N K+ S G+TQ ++L YLG+
Sbjct: 1081 LKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFG 1140
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+++ M+E ++ ++KKR +W + LS GK ++KSV ++P++ +S FK P+GI E
Sbjct: 1141 RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEI 1200
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 1201 ESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPN 1260
Query: 357 RLWGEVLSSR 366
L+ V+ +R
Sbjct: 1261 SLFARVMKAR 1270
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 239 bits (610), Expect = 1e-61
Identities = 135/370 (36%), Positives = 206/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L R+ L ++ +SQ+AFI GR + D+V++A+EV+ + R K M K D
Sbjct: 675 KCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVS 734
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL MR GFC KWIGWI A ++S SVL+NGSP RG+RQGDP
Sbjct: 735 KAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDP 794
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ + LS L+ +G ++G I+ LQF DD+LF +A+ +N
Sbjct: 795 LSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQA 854
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC-FARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N K+ S G+TQ ++L YLG+
Sbjct: 855 LKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFG 914
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+++ M+E ++ ++KKR +W + LS GK ++KSV ++P++ +S FK P+GI E
Sbjct: 915 RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEI 974
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 975 ESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPN 1034
Query: 357 RLWGEVLSSR 366
L+ V+ +R
Sbjct: 1035 SLFARVMKAR 1044
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 239 bits (610), Expect = 1e-61
Identities = 135/370 (36%), Positives = 207/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K + R+ L ++ +SQ+AFI GR + D+V++A+E++ + R K M K D
Sbjct: 140 KCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVS 199
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL MR GFC+KWIGWI A ++S SVL+NGSP RG+RQGDP
Sbjct: 200 KAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDP 259
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ + LS L++ +G ++G I+ LQF DD+LF +A+ +N
Sbjct: 260 LSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQA 319
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC-FARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N K+ S G+TQ +LN YLG+
Sbjct: 320 LKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFG 379
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+++ M+ ++ ++K+R SW K LS GK L+KSV ++P++ +S FK P+GI E
Sbjct: 380 RKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEI 439
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 440 ESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPN 499
Query: 357 RLWGEVLSSR 366
L+ V+ +R
Sbjct: 500 SLFARVMKAR 509
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 239 bits (609), Expect = 1e-61
Identities = 133/359 (37%), Positives = 208/359 (57%), Gaps = 11/359 (3%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K+L++R+ + +VI ESQ+AFI GR LD V++ +EV+ E +++ K +IFK+D++KAY
Sbjct: 66 KILTRRLSEIAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAY 125
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V+ FL+ ++ + GF ++WI W+K ++V +NG + RG+RQGDPL+P
Sbjct: 126 DKVQWSFLFDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSP 185
Query: 121 FLFLVVAEWLSGLMRQARRL--NLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVL 178
LF +VA+ LS ++ A++ +L G ++ LQ+ DDT+ + +N++ +
Sbjct: 186 LLFNLVADALSEMLNNAKQAVPHLVPG--------GLTHLQYADDTILFMTNTEENIVTV 237
Query: 179 KGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPR 238
K +L +E +SGLK+N+ K+ I E TQ A + NC+ K PFTYLGI + N
Sbjct: 238 KFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKL 297
Query: 239 RRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKR 298
+ + K++KRL +WK LS+GGK LI S LSSIPL+ + + P G+ +
Sbjct: 298 TNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDS 357
Query: 299 IQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWR-NLGEED 356
I+ F W K KW +C+ KE GLG D + N AL+ KW +R G+ED
Sbjct: 358 IRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKED 416
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 237 bits (605), Expect = 4e-61
Identities = 128/366 (34%), Positives = 210/366 (56%), Gaps = 1/366 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K+++ R+ V +VI SQ+ F+ GR++++ V++ +E + E ++ K +I K+D++KAY
Sbjct: 1238 KVMANRIALVAQKVIKPSQTTFLSGRNIMEGVVILHETLHELHKKKKNGVILKLDFEKAY 1297
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V FL +R GF KW WI + ++ +V+V VN ++GLRQGDPL+P
Sbjct: 1298 DKVDWKFLQQSLRMKGFSSKWCDWIDSIVRGGSVAVKVNDEIGSYFQTRKGLRQGDPLSP 1357
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
LF +V + L+ L+++A+ FKG + +S+LQ+ DDT+ + LK
Sbjct: 1358 ILFNLVVDMLAILIQRAKDQGRFKGVVPHLVDNGLSILQYADDTILFMDHDLDEARDLKL 1417
Query: 181 MLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRRR 240
+L FE LS LK+NF K+ + + ++ C PF YLGI +
Sbjct: 1418 VLSTFEKLSSLKINFYKSELFCYGKAKDVEHEYVKLFGCDTEDYPFKYLGIRMHHKRINN 1477
Query: 241 SMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQ 300
W+ + +++K+L SWK K LS GG++ LI SVLS++ +F LSFF+ P+GI K+ +
Sbjct: 1478 KDWQGVEERIQKKLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSFFEIPKGILKKLDYYR 1537
Query: 301 MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWG 360
F W + K A+WS +CK KE GLG+++LE N+ L+SKW ++ + EE +W
Sbjct: 1538 SRFFWQCDEHKKKYRLARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYKLINEEG-VWQ 1596
Query: 361 EVLSSR 366
++L ++
Sbjct: 1597 DILRNK 1602
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 234 bits (598), Expect = 2e-60
Identities = 121/366 (33%), Positives = 207/366 (56%), Gaps = 2/366 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K+L R+ + +I + Q+AF+ R +++ V++ +EV++ ++ + ++FKVD++KAY
Sbjct: 330 KVLMNRLNGTMAYIISKQQTAFLKNRFIMEGVVILHEVLNSIHQKKQSGILFKVDFEKAY 389
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V F+Y M++ GF ++W WI + V+V VN +GLRQGDPL+P
Sbjct: 390 DKVNWVFIYRMLKAKGFPDQWCDWIMKVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSP 449
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
LF + AE L+ L+++A +L +G D +I++LQ+ DDT+F+ + LK
Sbjct: 450 LLFNLAAEALTLLVQRAEENSLIEGLGTNGDN-KIAILQYADDTIFLINDKLDHAKNLKY 508
Query: 181 MLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRRR 240
+L FE LSGLK+NF+K+ + ++ + C+V P YLGI +
Sbjct: 509 ILCLFEQLSGLKINFNKSEVFCFGEAKEKQDLYSNIFTCKVGSLPLKYLGIPIDQKRILN 568
Query: 241 SMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQ 300
W+ KM+ +L W+ ++ S GG++ L+ S LSS+P++ +SF++ P+G+ + +
Sbjct: 569 KDWKLAENKMEHKLGCWQGRLQSIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFR 628
Query: 301 MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWG 360
FLW + G K W VC +++ GLGV DLE N+A++ KW WR L E+ W
Sbjct: 629 KRFLWQEDQGIRKYHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQ 687
Query: 361 EVLSSR 366
E++ ++
Sbjct: 688 EIIYAK 693
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 230 bits (586), Expect = 6e-59
Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGK---ECMIFKVDYK 57
K+L +R+ VL +I E+QSAF+ GR + D++L+A E+ R + M K D
Sbjct: 303 KILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMS 362
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +F+ ++R++GFCEKWI WI CI + VL+NG P + +RGLRQGDP
Sbjct: 363 KAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDP 422
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ E L +R+A R NL G KV +S L F DD+LF +A+ + +
Sbjct: 423 LSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGI 482
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
+ +L+ +E +SG ++NFSK+ G + + +L + +YLG+
Sbjct: 483 ILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLG 542
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ ++ + +++ R+ W K LS GGK +IKSV +++P + +S F+ P+ I +
Sbjct: 543 GSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKL 602
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
F W + + W W +C K + GLG ++++ FN AL++K WR + D
Sbjct: 603 TSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPD 662
Query: 357 RLWGEVLSSR 366
L+ +V R
Sbjct: 663 SLFAKVFKGR 672
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 229 bits (584), Expect = 1e-58
Identities = 129/370 (34%), Positives = 206/370 (54%), Gaps = 10/370 (2%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KEC-MIFKVDYK 57
K+++KRM +L ++I E+QSAF+ GR + D+VL+ +EV+ R K C M K D
Sbjct: 414 KIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMS 473
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL +++R GF WI W+ C+ S + S L+NG+P + V RGLRQGDP
Sbjct: 474 KAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDP 533
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P LF++ E LSGL +A+RL G +V ++G ++ L F DDT+F ++ ++
Sbjct: 534 LSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNK 593
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC----FARMLNCRVMKEPFTYLGIFV 233
L +L + SG +NF K+ ++ T + R+L R YLG+
Sbjct: 594 LSEILSRYGKASGQSINFHKS---SVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPE 650
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
R+R ++ ++ K++++ SW + LS GK ++K+VL+S+PL+ +S FK P +
Sbjct: 651 HFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALC 710
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLG 353
++ + + F W + K W WS + K GLG +D+ER N +L++K WR L
Sbjct: 711 RKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLN 770
Query: 354 EEDRLWGEVL 363
+ L +L
Sbjct: 771 SPESLLSRIL 780
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 228 bits (581), Expect = 2e-58
Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L +R+ L ++ +SQ+AFI GR + D+V++A+E++ + R + M K D
Sbjct: 881 KCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVS 940
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +FL MR GF E WI WI ++S SVLVNG P QRG+RQGDP
Sbjct: 941 KAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDP 1000
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ A+ L+ L++ +G ++G ++ LQF DD+LF +++ +N
Sbjct: 1001 LSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQA 1060
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQ-CFARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N SK+ S GTTQ +L + YLG+
Sbjct: 1061 LKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFG 1120
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
++R M+ ++ ++KKR SW K LS GK ++KSV S+P++ +S FK P I E
Sbjct: 1121 RKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEI 1180
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + +I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 1181 EALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPN 1240
Query: 357 RLWGEVLSSR 366
L+ ++ +R
Sbjct: 1241 SLFARIMKAR 1250
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 228 bits (581), Expect = 2e-58
Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L +R+ L ++ +SQ+AFI GR + D+V++A+E++ + R + M K D
Sbjct: 901 KCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVS 960
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +FL MR GF E WI WI ++S SVLVNG P QRG+RQGDP
Sbjct: 961 KAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDP 1020
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ A+ L+ L++ +G ++G ++ LQF DD+LF +++ +N
Sbjct: 1021 LSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQA 1080
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQ-CFARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N SK+ S GTTQ +L + YLG+
Sbjct: 1081 LKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFG 1140
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
++R M+ ++ ++KKR SW K LS GK ++KSV S+P++ +S FK P I E
Sbjct: 1141 RKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEI 1200
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + +I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 1201 EALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPN 1260
Query: 357 RLWGEVLSSR 366
L+ ++ +R
Sbjct: 1261 SLFARIMKAR 1270
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 226 bits (575), Expect = 1e-57
Identities = 121/347 (34%), Positives = 196/347 (55%), Gaps = 2/347 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K+ + R+ V +++ +Q+AF+ GR++LD V + +E V E R+ +IFK+D++KAY
Sbjct: 755 KVATNRISSVADNLVNPTQTAFMRGRNILDGVAIIHETVHELHRKKLNGVIFKIDFEKAY 814
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V+ FL +R GF KWI WIK+ I +V+V VN ++GL+QGDPL+P
Sbjct: 815 DKVKWPFLLQTLRMKGFSPKWISWIKSFIVGGSVAVKVNDDVGPFFQTKKGLQQGDPLSP 874
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
LF + + L+ L+ +A+ G + +S+LQ++DD + + +K
Sbjct: 875 ILFNFIVDMLATLINRAKTQGQVDGLIPHLIDGGLSILQYVDDIVLFMNHDLEKAQNMKS 934
Query: 181 MLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRRR 240
+L FE LSGLK+NF K+ +A++ C+V PF YLGI + R
Sbjct: 935 VLLAFEQLSGLKINFHKSELYCFGEALEYRDQYAQLFGCQVGNFPFRYLGIPIHCRKLRN 994
Query: 241 SMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQ 300
+ W+ +V + +K+L SWK K+LS GG++ LI SVLSS+P++ +SF P G+ K+ ++
Sbjct: 995 AEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLR 1054
Query: 301 MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKW 347
F W + K AKW +C+ K++ LG+ DLE L+++W
Sbjct: 1055 SRFYWQGDGHKKKYQLAKWDIICRPKDQGRLGIHDLEVI--TLVTRW 1099
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 221 bits (564), Expect = 2e-56
Identities = 125/363 (34%), Positives = 199/363 (54%), Gaps = 1/363 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K + R+ + +VI +Q+AFI GR +L+ ++ +EV+ E R+ E +I K+D++KAY
Sbjct: 1149 KCVCNRLTEIARDVISPTQTAFIPGRFILEGCVIIHEVLHEMNRKNLEGIILKIDFEKAY 1208
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V DFL +M R GF KW+ WIK C+ V + +NG T+ RGLRQGDPL+P
Sbjct: 1209 DKVSWDFLIEVMVRKGFPSKWVNWIKTCVMGGRVCININGERTDFFRTFRGLRQGDPLSP 1268
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
LF ++++ L+ ++ A+R + G + I+ LQ+ DDT+ + ++ K
Sbjct: 1269 LLFNLISDALAAMLDSAKREGVLSGLVPDIFPGGITHLQYADDTVLFVANDDKQIVATKF 1328
Query: 181 MLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRRR 240
+L FE ++ LKVN+ K+ + L + T A M NC V + P YLG+ +G +
Sbjct: 1329 ILYCFEEMAVLKVNYHKSEIFTLGLSDNDTNRVAMMFNCPVGQFPMKYLGLPIGPDKILN 1388
Query: 241 SMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQ 300
++ L K++KRL SW LS G+ I + LSSIP + + F++ P G+ ++ I+
Sbjct: 1389 LGFDFLGQKLEKRLNSWGNN-LSHAGRAVQINTCLSSIPSYAMCFYQLPEGVHQKFGSIR 1447
Query: 301 MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWG 360
+ W R GK KW + K+ GLG + R N AL++KW + E+D L
Sbjct: 1448 GRYYWARNRLKGKYHMVKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESEDDSLCI 1507
Query: 361 EVL 363
E+L
Sbjct: 1508 ELL 1510
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 221 bits (563), Expect = 3e-56
Identities = 122/370 (32%), Positives = 201/370 (53%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGK---ECMIFKVDYK 57
K+L +R+ ++L +I E+ SAF+ GR + D++L+A E+ R + M K D
Sbjct: 369 KILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDMS 428
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +F+ +++++GFCEKWI WI CI + VL+NG P V +RGLRQGDP
Sbjct: 429 KAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDP 488
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ E L +R+A + L G KV +S L F +D+LF +A+ + V
Sbjct: 489 LSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANKEQCGV 548
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
+ G+L+ +E +SG +NFSK+ G +G+ L + +YLG+
Sbjct: 549 ILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESLG 608
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ ++ + +++ R+ W K LS GGK +IKSV++ +P + +S F+ P+ I +
Sbjct: 609 GSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKL 668
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
F W + + + W W+ +C K + GLG + + FN AL++K WR + D
Sbjct: 669 TSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPD 728
Query: 357 RLWGEVLSSR 366
L+ +V R
Sbjct: 729 SLFAKVFKGR 738
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 219 bits (558), Expect = 1e-55
Identities = 131/373 (35%), Positives = 202/373 (54%), Gaps = 10/373 (2%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K+L++R+ + L ++ +QSAF+ R + D++LVA+E++ R R KE M FK D
Sbjct: 497 KILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMS 556
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL MM LGF KWI WI C+ S + SVL+NG P + RG+RQGDP
Sbjct: 557 KAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDP 616
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P LF++ E L ++ +A + G + + ++ L F DDTL + +A+ Q
Sbjct: 617 LSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEE 676
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCR--VMKEPFT--YLGIFV 233
L L + LSG +N +K+ I+ G+ + R + E T YLG+
Sbjct: 677 LMQCLSQYGQLSGQMINLNKS---AITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPE 733
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
+ +R ++ + K++ RL W K LS GGK L+KS+ ++P++ +S FK P+ +
Sbjct: 734 CLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLC 793
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLG 353
++ + MDF W KI W W + K++ G G KDL+ FN+AL++K WR L
Sbjct: 794 QKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 853
Query: 354 EEDRLWGEVLSSR 366
E+ L+ V SR
Sbjct: 854 EKGSLFSRVFQSR 866
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 219 bits (558), Expect = 1e-55
Identities = 131/373 (35%), Positives = 202/373 (54%), Gaps = 10/373 (2%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K+L++R+ + L ++ +QSAF+ R + D++LVA+E++ R R KE M FK D
Sbjct: 518 KILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMS 577
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL MM LGF KWI WI C+ S + SVL+NG P + RG+RQGDP
Sbjct: 578 KAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDP 637
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P LF++ E L ++ +A + G + + ++ L F DDTL + +A+ Q
Sbjct: 638 LSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEE 697
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCR--VMKEPFT--YLGIFV 233
L L + LSG +N +K+ I+ G+ + R + E T YLG+
Sbjct: 698 LMQCLSQYGQLSGQMINLNKS---AITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPE 754
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
+ +R ++ + K++ RL W K LS GGK L+KS+ ++P++ +S FK P+ +
Sbjct: 755 CLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLC 814
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLG 353
++ + MDF W KI W W + K++ G G KDL+ FN+AL++K WR L
Sbjct: 815 QKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 874
Query: 354 EEDRLWGEVLSSR 366
E+ L+ V SR
Sbjct: 875 EKGSLFSRVFQSR 887
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 219 bits (557), Expect = 1e-55
Identities = 117/347 (33%), Positives = 197/347 (56%), Gaps = 1/347 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECMIFKVDYKKAY 60
K+L R+ ++ +I ++Q+AF+ R +++ VL+ +E+++ ++ + ++FKVD++KAY
Sbjct: 492 KVLMNRITEIMTYIISKNQTAFLKNRFIMEGVLILHEILNSLHQKKQSGVLFKVDFEKAY 551
Query: 61 DSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLAP 120
D V F+Y M++ F ++W W+ I V+V VN +GLRQGDPL+P
Sbjct: 552 DKVDWVFIYRMLKAKEFPDQWCDWVMKVIMGGKVAVQVNDQVGPYFKTHKGLRQGDPLSP 611
Query: 121 FLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLKG 180
LF + A+ L L+++A L +G D ++ +LQ+ DDT+F+ + LK
Sbjct: 612 LLFNLAAKALILLVQRAEDNLLIEGLGEN-DNNKVVILQYADDTIFLLPDNETYAKNLKY 670
Query: 181 MLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRRR 240
+L FE LSGLK+NF+K+ I + F+++ C V P YLGI + +
Sbjct: 671 ILCLFEQLSGLKINFNKSEVFCIGEAADKAEVFSQIFTCSVGVLPMKYLGIPLDQKRITK 730
Query: 241 SMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQ 300
W KM+ +L W+ K+ S GG++ LI S LSS+P++ +SFFK P+G+ ++ +
Sbjct: 731 KDWRNAENKMESKLGCWQGKLQSIGGRLILINSSLSSVPMYMISFFKLPKGVKEKMDFFR 790
Query: 301 MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKW 347
FLW + G K +W +C +++ GLGV DL+ N+AL+ KW
Sbjct: 791 RRFLWQEDQGIRKYHLVQWPIICSPRDQGGLGVLDLDIMNKALLGKW 837
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 218 bits (555), Expect = 2e-55
Identities = 129/360 (35%), Positives = 199/360 (54%), Gaps = 16/360 (4%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KEC-MIFKVDYK 57
KLLS+R+ +L E+I E+QSAF+ R D+VL+ +E + + G K C M K +
Sbjct: 345 KLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMS 404
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD + DF+ +M+ +GF + WI WI CI + + S L+NGS +RGLRQGDP
Sbjct: 405 KAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDP 464
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+PFLF++ +E LSGL R+A+ G +V ++ L F DDT+F + ++
Sbjct: 465 LSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKT 524
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCF----ARMLNCRVMKEPFTYLGIFV 233
+L+ +E SG +N SK+ I+ T ++L +++ YLG+
Sbjct: 525 FLCILKKYEEASGQMINKSKS---AITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPK 581
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
++R ++ +V ++++R SW + LS GK ++KSVL+S+P + +S FK +
Sbjct: 582 MFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKL---LV 638
Query: 294 KECKRIQ---MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWR 350
CKRIQ F W K+CW WS + K K+E GLG KD+ FN AL++K WR
Sbjct: 639 SLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWR 698
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 218 bits (554), Expect = 3e-55
Identities = 129/370 (34%), Positives = 201/370 (53%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K+++KR+ L E++ ++QSAF+ R + D++LVA+E+V + R E M K D
Sbjct: 485 KIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMS 544
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +L ++ LGF KW+ WI C+ S T SVL+N P ++QRGLRQGDP
Sbjct: 545 KAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDP 604
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+PFLF++ E L+ L+ +A+ +G + +G + L F DD+LF+ +AS + LV
Sbjct: 605 LSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLV 664
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
L+ +L+ + +G +N +K+ G + E L TYLG+ +
Sbjct: 665 LQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFS 724
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ M L ++K++L W + LS GGK L+KSV ++P+F +S FK P +
Sbjct: 725 GSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENL 784
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ F W + KI W W +C K+ GLG +D++ FN+AL++K WR L D
Sbjct: 785 ESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPD 844
Query: 357 RLWGEVLSSR 366
L +L SR
Sbjct: 845 CLLSRLLKSR 854
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 218 bits (554), Expect = 3e-55
Identities = 129/370 (34%), Positives = 201/370 (53%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K+++KR+ L E++ ++QSAF+ R + D++LVA+E+V + R E M K D
Sbjct: 482 KIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMS 541
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +L ++ LGF KW+ WI C+ S T SVL+N P ++QRGLRQGDP
Sbjct: 542 KAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDP 601
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+PFLF++ E L+ L+ +A+ +G + +G + L F DD+LF+ +AS + LV
Sbjct: 602 LSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLV 661
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
L+ +L+ + +G +N +K+ G + E L TYLG+ +
Sbjct: 662 LQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFS 721
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ M L ++K++L W + LS GGK L+KSV ++P+F +S FK P +
Sbjct: 722 GSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENL 781
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ F W + KI W W +C K+ GLG +D++ FN+AL++K WR L D
Sbjct: 782 ESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPD 841
Query: 357 RLWGEVLSSR 366
L +L SR
Sbjct: 842 CLLSRLLKSR 851
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 216 bits (550), Expect = 9e-55
Identities = 129/357 (36%), Positives = 199/357 (55%), Gaps = 24/357 (6%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKEC----MIFKVDY 56
K+L KR+ + LG+VI +SQ+AF+ G+++ D+VLVA+E++ + + +EC + K D
Sbjct: 881 KILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSR-RECQSGYVAVKTDI 939
Query: 57 KKAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGD 116
KAYD V +FL +M +LGF +W+ WI C+ S + VL+NGSP + RG+RQGD
Sbjct: 940 SKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGD 999
Query: 117 PLAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVL 176
PL+P+LFL AE LS ++R+A G K+ D + IS L F DD+LF AS QN+
Sbjct: 1000 PLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIE 1059
Query: 177 VLKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGA 235
L + + +E SG K+N++K+ G + Q R+L ++ YLG+
Sbjct: 1060 QLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQL 1119
Query: 236 NPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKE 295
R+ ++E +V K+K+R + W LS GK +IK++ ++P++ ++ F P I E
Sbjct: 1120 GRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNE 1179
Query: 296 CKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNL 352
+ F WG+E E LG KDL +FNRAL++K WR L
Sbjct: 1180 INSLITAFWWGKE------------------NEGDLGFKDLHQFNRALLAKQAWRIL 1218
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,760,734
Number of Sequences: 2540612
Number of extensions: 25541451
Number of successful extensions: 62033
Number of sequences better than 10.0: 1027
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 60111
Number of HSP's gapped (non-prelim): 1283
length of query: 366
length of database: 863,360,394
effective HSP length: 129
effective length of query: 237
effective length of database: 535,621,446
effective search space: 126942282702
effective search space used: 126942282702
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0134.24