BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.17
(431 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris] 191 3e-47
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 97 1e-18
emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar... 94 8e-18
emb|CAB77873.1| putative transposon protein [Arabidopsis thalian... 90 1e-16
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu... 89 3e-16
gb|AAP53589.1| putative gag-pol precursor [Oryza sativa (japonic... 89 3e-16
ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cu... 89 3e-16
gb|AAP52950.1| putative retroelement [Oryza sativa (japonica cul... 88 4e-16
gb|AAK92584.1| Putative retroelement [Oryza sativa] 88 4e-16
gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cul... 88 6e-16
emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultiva... 88 6e-16
gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza... 87 8e-16
gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cult... 87 8e-16
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19... 87 8e-16
gb|AAP53331.1| putative polyprotein [Oryza sativa (japonica cult... 87 1e-15
gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonic... 87 1e-15
emb|CAE05586.1| OSJNBa0032N05.14 [Oryza sativa (japonica cultiva... 86 2e-15
gb|AAU10841.1| putative polyprotein [Oryza sativa (japonica cult... 86 2e-15
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (j... 86 2e-15
gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cul... 86 2e-15
>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
Length = 1859
Score = 191 bits (486), Expect = 3e-47
Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 31/311 (9%)
Query: 145 PPRVVVDKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAG-------------RSQLNDRG 191
PP D +K C+YHR+ G+ T C LK++IE L++AG RS D
Sbjct: 455 PPNA--DTSKRCQYHRNYGHTTEGCQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHD 512
Query: 192 DRWRG*RQ----QGNRYKGDR*QDDRRRDD---RRRTPTSDKKETLATRKKGSEETFNKD 244
R R R+ + N Y+ R R+R + RR P S+ E + K+ N
Sbjct: 513 PRERSGRRDDRTRDNHYRSSR----RKRSESPIRRTRPKSESPERRSRTKQKVRTVINTI 568
Query: 245 LEP-----PVGTINTIAGGFGGGGDIASTRRRNVRAVTSVREYEAPFGFHHPDIVISSAD 299
P P IN IAGGF GGG S R++++RA+ SV H P I + D
Sbjct: 569 AGPVSLGQPPQEINYIAGGFAGGGCSNSARKKHLRAIQSVHSTPTQRRPHIPPITFTDED 628
Query: 300 F*RIKTHKDDPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLV 359
F I +DDP+V+ + I+ F + +VL++QGSS DI+Y + F ++ + + ++ PY +V
Sbjct: 629 FTAIDPSQDDPMVITVEIDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIV 688
Query: 360 GFSGEQVWVRGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTD 419
GFS E+V +G++DL+T FG D +K + +RYL++ SYN+++GR ++NRL A++ST
Sbjct: 689 GFSRERVDTKGFIDLYTTFGDDYLSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTP 748
Query: 420 HLAVKYPLICG 430
HLA+K+P + G
Sbjct: 749 HLAMKFPSVNG 759
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 97.1 bits (240), Expect = 1e-18
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 32/289 (11%)
Query: 151 DKTKWCEYHRSAGYDTGDCFTLKNEIE-------RLIRAGRSQLNDRGDRWRG*RQQGNR 203
D+TK+C+ H G+ T +C++ I R L +R+ N+
Sbjct: 630 DQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEECRQMTHLLEKHVNRYE------NK 683
Query: 204 YKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKDLEPPVGTINTIAGGFGGGG 263
Y+G R D+R + P K E + E P IN I GG G
Sbjct: 684 YEGAR---DQRGQNAIEAPQVMKIEAIE--------------EVPKRVINAITGGSSLGV 726
Query: 264 DIASTRRRNVRAVTSV-REYEA-PFGFHHPDIVISSADF*RIKTHKDDPVVVMIRINSFN 321
+ R+ VR V V Y++ P + I D I DP+VV + I
Sbjct: 727 ESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCE 786
Query: 322 VRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWVRGYLDLHTVFGVD 381
V+RVL++ GSSAD+++ DAF ++ + + L L GF G+QV G + L VFG
Sbjct: 787 VQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKG 846
Query: 382 ENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYPLICG 430
N + + + V+ + YN I+GR+T+N A+I +++ +K P + G
Sbjct: 847 TNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGLRG 895
>emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa (japonica cultivar-group)]
gi|50922621|ref|XP_471671.1| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
gi|38343986|emb|CAD40452.2| OSJNBa0041M21.10 [Oryza
sativa (japonica cultivar-group)]
Length = 2074
Score = 94.0 bits (232), Expect = 8e-18
Identities = 83/316 (26%), Positives = 132/316 (41%), Gaps = 57/316 (18%)
Query: 111 RQEESGKSLNAHLTELLRKVKATHVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGDCF 170
R + +GK++ A E ++ ++ + P R V K +C +H + + T C
Sbjct: 1325 RTDRAGKAVMA--VEEVQALRKEFDTQQASNHQQPARKKVRKDLYCAFHGRSSHTTEQC- 1381
Query: 171 TLKNEIERLIRAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETL 230
R R RG Q +G + R + TP +++T
Sbjct: 1382 -------------------RNIRQRGNVQDPRPQQGTTVEAPREAVQEQTTPAKQRQDTQ 1422
Query: 231 ATRKKGSEETFNKDLEPPVGTINTIAGGFGGGGDIASTRRRNVRAVTSVREYEAPFGFHH 290
RK + R V ++TS E AP + +
Sbjct: 1423 RRRKM---------------------------------QIRMVHSITSAGE-GAP-QYVN 1447
Query: 291 PDIVISSADF*RIKTHKDDPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKD 350
I D + DP+V+ I F VRR+L++ GSSAD+IY +A+ ++GL +
Sbjct: 1448 QLISFGPEDAEGVLFPHQDPLVISAEIAGFEVRRILVDGGSSADVIYAEAYAKMGLPTQA 1507
Query: 351 LMPYTGTLVGFSGEQVWVRGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLN 410
L P +L GFSGE V V G L FG EN + ++ + V+ + +YN I GR TLN
Sbjct: 1508 LTPALTSLRGFSGEAVQVLGQALLLIAFGSGENRREEQILFDVVNIPYNYNAIFGRATLN 1567
Query: 411 RLCAVISTDHLAVKYP 426
+L A+ ++L +K P
Sbjct: 1568 KLEAISHHNYLKLKMP 1583
>emb|CAB77873.1| putative transposon protein [Arabidopsis thaliana]
gi|3377834|gb|AAC28207.1| T24H24.13 gene product
[Arabidopsis thaliana] gi|7487390|pir||T01469
hypothetical protein T24H24.13 - Arabidopsis thaliana
Length = 681
Score = 90.1 bits (222), Expect = 1e-16
Identities = 77/324 (23%), Positives = 142/324 (43%), Gaps = 42/324 (12%)
Query: 121 AHLTELLRKVKATHVVEAGEKETDPPRVVVDKTKWCEYHRSAGYDTGDCFTLKNEIERLI 180
AHL + ++ + + + +D K+C+YH+ GY T +C +K +LI
Sbjct: 351 AHLRSFRFAITRAYLTDEENEAAENESPELDLGKYCKYHKKRGYSTEECRAVK----KLI 406
Query: 181 RAGRSQLNDRGDRWRG*RQQGNRYKGDR*QDDRRRDD-------RRRTPTSDKKETLATR 233
AG G ++G+ K + D + ++ R RTP A
Sbjct: 407 AAG------------GKTKKGSNPKVETPPPDEQEEEQTPKQKKRERTPEGITTPPPAPH 454
Query: 234 KKGSE---------ETFNKDLEPPVGTINTIAGGFGGGGDIASTRRRNVRAVTSVREYEA 284
KK + + L P I+ I GG D ++ + + R S + ++
Sbjct: 455 KKNMRFPLRLLKFCRSATEHLSPK--RIDFIMGGSQLCNDSINSIKTHQRKADSYTKGKS 512
Query: 285 PFGFHHPDIVISSADF*RIKTHKDDPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQL 344
P + I ++ + DD +V+ I + ++ + ++++ GSS D+++ DAF ++
Sbjct: 513 PMMGPNHQITFWESETTDLNKPHDDALVIRIDVGNYELSHIMIDTGSSVDVLFYDAFKRM 572
Query: 345 GLTDKDLMPYTGTLVGFSGEQVWVRGYLDLHTVFGVDENAKLLR--VRYLVLQVVASYNV 402
G D +L L GF+G+ + G + L T+ A+ +R +LV+ A +N
Sbjct: 573 GHLDSELQGRKTPLTGFAGDTTFSLGTIQLPTI------ARGVRRLTSFLVVNKKAPFNA 626
Query: 403 IIGRNTLNRLCAVISTDHLAVKYP 426
I+GR L+ + AV ST H +K+P
Sbjct: 627 ILGRPWLHAMKAVPSTYHQCIKFP 650
>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1459
Score = 89.0 bits (219), Expect = 3e-16
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 2/183 (1%)
Query: 246 EPPVGTINTIAGGFGGGGDIASTRRRNVRAVTSV-REYEA-PFGFHHPDIVISSADF*RI 303
E P IN I GG G + R+ VR + V Y++ P + + I D I
Sbjct: 205 EAPKRVINAITGGSSLGVESKRQRKAYVRQIHHVGTSYQSVPPAYSNTVISFGPEDAEGI 264
Query: 304 KTHKDDPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSG 363
DP+V+ + I V+RVL++ GSSAD+++ DAF ++ + + L L GF G
Sbjct: 265 LFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGG 324
Query: 364 EQVWVRGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAV 423
QV G + L VFG EN + V + V+ + YN ++GR+T+N A+I +++ +
Sbjct: 325 HQVHTIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAVLGRSTINIFEAIIHHNYICM 384
Query: 424 KYP 426
K P
Sbjct: 385 KLP 387
>gb|AAP53589.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37534000|ref|NP_921302.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|20503036|gb|AAM22724.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1112
Score = 88.6 bits (218), Expect = 3e-16
Identities = 96/366 (26%), Positives = 147/366 (39%), Gaps = 47/366 (12%)
Query: 78 KKIKSGERTAKEPLYPRKESFERRRPWHQTDSRRQEESGKSLNAHLTELL-RKVKATHVV 136
+KI S E L+ + R+ + R + G L A L RK KAT
Sbjct: 330 EKIASKEPKTTAELFELADKVARKE---EAKPARSNDEGHVLAADGPALAPRKGKAT--- 383
Query: 137 EAGEK--ETDPPRVVVDKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRW 194
G+K T P KWC H S + DC ++KN ER +A ++ R +
Sbjct: 384 --GDKPSSTAPSGEGRSADKWCSVHNSYRHSLADCRSVKNLAERFRKADENKRQGRRESK 441
Query: 195 RG*RQQGNRYKGDR*QDDRRRDDRRRTPTSDKKETLATRKKGSEETFNKDLEPPVGTINT 254
G DRR + + + P D + SE+ D + P GT+ T
Sbjct: 442 APATSTG----------DRREEAKNKAPADDGGD--------SEDL---DFQIPQGTVAT 480
Query: 255 IAGGFGGGGDIASTRRRNVRAVTSVREYEAPFGFHHPDIVISSADF*RIKTHKDDP---- 310
+ GG GGG A T RR + + RE A H + D P
Sbjct: 481 LDGG--GGGACAHTSRRGFKVMR--RELLAAVPTHEAARKARWLEVKLTFDQSDHPTVLS 536
Query: 311 ------VVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGE 364
+VV I++ ++RVL++ G S II +FD L L P +++G +
Sbjct: 537 RGGKLALVVSPTIHNVKMKRVLVDGGDSLSIISPASFDALKAPGMKLQPSL-SIIGVTPG 595
Query: 365 QVWVRGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVK 424
+W G+++L FG N + R+ + V + YNV++GR L + A +L +K
Sbjct: 596 HMWPLGHVELPVTFGDSTNFRTERIDFDVADLNLPYNVVLGRPALVKFMAATHYAYLQMK 655
Query: 425 YPLICG 430
P + G
Sbjct: 656 MPGLAG 661
>ref|NP_912595.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|13486715|dbj|BAB39950.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1579
Score = 88.6 bits (218), Expect = 3e-16
Identities = 85/350 (24%), Positives = 143/350 (40%), Gaps = 60/350 (17%)
Query: 93 PRKESFERRRPWHQTDSRRQEESGKSLNAHLTELLRK-VKATHVVEAGEKETD------- 144
P S + +P Q RQ ++ + T+ K V A V+A KE D
Sbjct: 253 PSPLSVRQSQPAIQGQPPRQGQAPITWRKFRTDCAGKAVMAVEEVQALRKEFDAQQASNH 312
Query: 145 --PPRVVVDKTKWCEYHRSAGYDTGDCFTLKNEIERLIRAGRSQLNDRGDRWRG*RQQGN 202
P R V K +C +H + + T C R R RG Q
Sbjct: 313 QQPARKKVRKDLYCAFHGRSSHTTEQC--------------------RNIRQRGNAQDPR 352
Query: 203 RYKGDR*QDDRRRDDRRRTPTSDKKET------LATRKKGSEETFNKDLEPPVGTINTIA 256
KG + R + +P ++ + TR + + + + +++I
Sbjct: 353 PQKGTTFEASREAIQEQTSPAEQCQDVQRRVIQVITRADPPSQLSKRQKKMQIRMVHSIT 412
Query: 257 GGFGGGGDIASTRRRNVRAVTSVREYEAPFGFHHPDIVISSADF*RIKTHKDDPVVVMIR 316
+ + + + S +A F H D+++ SA+
Sbjct: 413 -------SVGEGAPQYLNQLISFGPEDAGVMFPHQDLLVISAE----------------- 448
Query: 317 INSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWVRGYLDLHT 376
I F VRR+L++ GSSAD+I+ +A+ ++GL+ + L P +L GF GE V V G L
Sbjct: 449 IAGFEVRRILVDGGSSADVIFAEAYAKMGLSTQALTPAPASLRGFGGEAVQVLGQALLLI 508
Query: 377 VFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
FG EN + ++ + V+ + +YN I GR +LN+L A+ ++L +K P
Sbjct: 509 AFGSGENRREEQILFDVIDIPYNYNAIFGRASLNKLEAISHHNYLKLKMP 558
>gb|AAP52950.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532722|ref|NP_920663.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881697|gb|AAM01098.1| Putative retroelement [Oryza
sativa]
Length = 1367
Score = 88.2 bits (217), Expect = 4e-16
Identities = 46/118 (38%), Positives = 70/118 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ SSAD+I+ +A+ ++GLT + + P L GF GE V V
Sbjct: 514 DPLVISAEIAGFEVRRILVDGESSADVIFAEAYAKMGLTTQAITPAPALLRGFGGEAVQV 573
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + +V + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 574 LGQAQLMVAFGTGENRREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 631
>gb|AAK92584.1| Putative retroelement [Oryza sativa]
Length = 1705
Score = 88.2 bits (217), Expect = 4e-16
Identities = 46/118 (38%), Positives = 70/118 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ SSAD+I+ +A+ ++GLT + + P L GF GE V V
Sbjct: 656 DPLVISAEIAGFEVRRILVDGESSADVIFAEAYAKMGLTTQAITPAPALLRGFGGEAVQV 715
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + +V + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 716 LGQAQLMVAFGTGENRREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 773
>gb|AAP52839.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532500|ref|NP_920552.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|13992677|gb|AAK51571.1| Putative retroelement [Oryza
sativa]
Length = 1497
Score = 87.8 bits (216), Expect = 6e-16
Identities = 46/118 (38%), Positives = 72/118 (60%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L+++GSSADII+ +A+ ++GL + L P +L GF GE V V
Sbjct: 441 DPLVISAEIAGFEVRRILVDEGSSADIIFAEAYAKMGLPTQALTPAPASLRGFGGEPVQV 500
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG +N + ++ + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 501 LGQALLLIAFGSGDNRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 558
>emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa (japonica cultivar-group)]
gi|50930473|ref|XP_474764.1| OSJNBb0033G08.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1847
Score = 87.8 bits (216), Expect = 6e-16
Identities = 46/118 (38%), Positives = 71/118 (59%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSSAD+I+ +A+ ++GL + L P +L GF GE V V
Sbjct: 782 DPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKIGLPTQALTPAPASLRGFGGEAVQV 841
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + ++ + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 842 LGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAIFHHNYLKLKMP 899
>gb|AAP53721.1| contains similarity to gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37534264|ref|NP_921434.1| contains
similarity to gag-pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 1260
Score = 87.4 bits (215), Expect = 8e-16
Identities = 46/118 (38%), Positives = 70/118 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSSAD+I+ +A+ ++GL L P +L GF G+ V V
Sbjct: 404 DPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTLALTPAPASLRGFGGKAVQV 463
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + +V + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 464 LGQAQLLVAFGTGENRREEQVLFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 521
>gb|AAP52706.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532234|ref|NP_920419.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|19225035|gb|AAL86511.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1722
Score = 87.4 bits (215), Expect = 8e-16
Identities = 47/118 (39%), Positives = 70/118 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSSAD+I+ +A+ ++GLT + L P +L GF GE V V
Sbjct: 534 DPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGGEAVQV 593
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + +V + V+ + +YN I GR TLN + ++L +K P
Sbjct: 594 LGQALLLIAFGSGENRREEQVLFDVVDIPYNYNTIFGRATLNMFEVISHHNYLELKMP 651
>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
[Sorghum bicolor]
Length = 1877
Score = 87.4 bits (215), Expect = 8e-16
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 247 PPVGTINTIAGGFGGGGDIASTRRRNVRAVTSVREY---------EAPFGFHHPDIVISS 297
P +G I IAGG ++ ++R V +V P F D+ + S
Sbjct: 572 PTIGMILPIAGGSSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDWSRTPITFTEEDLRLES 631
Query: 298 ADF*RIKTHKDDPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGT 357
D +V+ + + V R+L++ GSSADII+ FDQ+ L+ L P
Sbjct: 632 YPH-------TDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESP 684
Query: 358 LVGFSGEQVWVRGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVIS 417
L+GF G+Q+ G + L FG ENA+ V + V+ + YN I GR LN+ A
Sbjct: 685 LIGFGGKQIHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNKFNAAAH 744
Query: 418 TDHLAVKYPLICG 430
+L +K P + G
Sbjct: 745 MGYLCMKIPALHG 757
>gb|AAP53331.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533484|ref|NP_921044.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18057150|gb|AAL58173.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1931
Score = 86.7 bits (213), Expect = 1e-15
Identities = 46/118 (38%), Positives = 70/118 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSSAD+I+ +A+ +GL + L P +L GF GE V V
Sbjct: 788 DPLVISAEIAGFEVRRILVDGGSSADVIFAEAYATMGLPTQSLTPAPTSLHGFGGEAVQV 847
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + ++ + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 848 LGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAICHHNYLKLKMP 905
>gb|AAT77832.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1631
Score = 86.7 bits (213), Expect = 1e-15
Identities = 46/118 (38%), Positives = 71/118 (59%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSSAD+I+ +A+ ++GL + L P +L GF GE V V
Sbjct: 550 DPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGGEAVRV 609
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + ++ + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 610 LGQALLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 667
>emb|CAE05586.1| OSJNBa0032N05.14 [Oryza sativa (japonica cultivar-group)]
Length = 598
Score = 86.3 bits (212), Expect = 2e-15
Identities = 44/122 (36%), Positives = 72/122 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP++++ I F VRR+L++ GSSAD+I +A+ ++GL L +L GF GE V V
Sbjct: 85 DPLIILAEIVGFEVRRILVDGGSSADVIIAEAYARMGLPTLALTQAPTSLQGFGGEAVQV 144
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYPLI 428
G + L FG +N + ++ + V+ + +YN I GR TLN+ A+ ++L +K P +
Sbjct: 145 LGQVQLAVAFGTSDNRREEQILFDVVDIPYNYNTIFGRATLNKFKAISHHNYLKLKMPGL 204
Query: 429 CG 430
G
Sbjct: 205 AG 206
>gb|AAU10841.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1528
Score = 86.3 bits (212), Expect = 2e-15
Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 264 DIASTRRRNVRAVTSVREYEAPFGFHHPDIVISSADF*RIKTHKDDPVVVMIRINSFNVR 323
D T R N +V E + + I D + DP+V+ I F VR
Sbjct: 457 DALRTPRSNAETFGNVATREGAPQYLNQQIFFGPEDAEGVMFPHQDPLVISAEIAGFEVR 516
Query: 324 RVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWVRGYLDLHTVFGVDEN 383
R+L+N GSSAD+I+ +A+ ++GLT + L P +L GF GE V V G L FG EN
Sbjct: 517 RILVNGGSSADVIFAEAYAKMGLTTQALTPALTSLRGFGGEAVQVLGQAHLIVAFGTGEN 576
Query: 384 AKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
+ +YN I GR TLN+ A+ ++L +K P
Sbjct: 577 RR----------EEQNYNTIFGRATLNKFEAISHHNYLKLKMP 609
>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 1168
Score = 86.3 bits (212), Expect = 2e-15
Identities = 45/116 (38%), Positives = 69/116 (58%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSS D+I+ +A+ ++GLT + L P +L GF GE V V
Sbjct: 369 DPLVISAEIAGFEVRRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSLRGFGGEAVQV 428
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVK 424
G L FG EN + +V + V+ + +YN I GR TLN+ + ++L +K
Sbjct: 429 LGQAQLIVAFGTGENRREEQVLFDVVDIPYNYNAIFGRATLNKFEVISHHNYLKLK 484
>gb|AAP53628.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37534078|ref|NP_921341.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881722|gb|AAM01123.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1292
Score = 85.9 bits (211), Expect = 2e-15
Identities = 46/118 (38%), Positives = 71/118 (59%)
Query: 309 DPVVVMIRINSFNVRRVLLNQGSSADIIYGDAFDQLGLTDKDLMPYTGTLVGFSGEQVWV 368
DP+V+ I F VRR+L++ GSSAD+I+ +A+ ++GL + L P +L GF GE V V
Sbjct: 361 DPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPVSLRGFGGEAVQV 420
Query: 369 RGYLDLHTVFGVDENAKLLRVRYLVLQVVASYNVIIGRNTLNRLCAVISTDHLAVKYP 426
G L FG EN + ++ + V+ + +YN I GR TLN+ A+ ++L +K P
Sbjct: 421 LGQTLLLIAFGSGENRREEQILFDVVDIPYNYNAIFGRATLNKFEAISHHNYLKLKMP 478
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.143 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 723,856,537
Number of Sequences: 2540612
Number of extensions: 31011861
Number of successful extensions: 108973
Number of sequences better than 10.0: 608
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 107469
Number of HSP's gapped (non-prelim): 1076
length of query: 431
length of database: 863,360,394
effective HSP length: 131
effective length of query: 300
effective length of database: 530,540,222
effective search space: 159162066600
effective search space used: 159162066600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0134.17