BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.10
(1564 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays] 297 2e-78
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays] 296 4e-78
gb|AAD20307.1| copia-type pol polyprotein [Zea mays] 294 1e-77
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 292 7e-77
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays] 291 2e-76
gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cul... 286 3e-75
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 286 4e-75
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 286 4e-75
ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (jap... 286 5e-75
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 285 9e-75
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 285 9e-75
gb|AAL75483.1| putative pol protein [Zea mays] 284 2e-74
gb|AAL66759.1| putative pol protein [Zea mays] 283 4e-74
gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cult... 281 1e-73
gb|AAD09019.1| copia protein [Zea mays] 281 1e-73
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 280 2e-73
gb|AAL35398.1| Opie2 pol [Zea mays] 280 3e-73
gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cult... 280 4e-73
gb|AAL35396.1| Opie2a pol [Zea mays] 279 5e-73
emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar... 278 1e-72
>gb|AAP94599.1| putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 297 bits (760), Expect = 2e-78
Identities = 148/258 (57%), Positives = 185/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K ++ND+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMMGELKYFLG QV Q EG
Sbjct: 1431 KTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEG 1490
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT+++L KF M ++ KTPM L+ + V QK+Y MIG+LLYL A
Sbjct: 1491 TFISQTKYTQDILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCA 1550
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL Y + + L GY DAD+
Sbjct: 1551 SRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLLGYSDADW 1610
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + RKSTS CQFLG +LVSWASK Q+++ALSTAEAEYI C Q+LWM+ L D
Sbjct: 1611 AGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRD 1670
Query: 1479 YQILESNISIYCDNTAAI 1496
Y + + + CDN +AI
Sbjct: 1671 YGYKLTKVPLLCDNESAI 1688
Score = 81.6 bits (200), Expect = 2e-13
Identities = 110/452 (24%), Positives = 186/452 (40%), Gaps = 104/452 (23%)
Query: 26 EEGKKIPRSEMTADQKKLYSQHHKARA--ILLSAISYEEYEKITDREYAKGIFESLKMSH 83
+E KK R E + + +H ++A ILL+++S EEY K+ + AK I++ LK +H
Sbjct: 102 QERKKY-RDENYDEDEVAQIEHFNSQATTILLASLSREEYNKVQGLKSAKEIWDVLKTAH 160
Query: 84 EGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVI 143
EG++ K +K ++ + F + E + M++R + LV +R L + +++VI
Sbjct: 161 EGDELTKITKRETIEGELGRFRLRKGEEPQHMYNRLKTLVNQVRNLGSVKWDDHEMVKVI 220
Query: 144 -RSL---------------------PE----SWMPLVTSIELTRDVERM----SLEELIS 173
RSL PE +++ IE +R + + + E
Sbjct: 221 LRSLIFLNPTQVQLIRGNPRYTKMTPEEVIGNFVSFECMIEGSRKINELDDATTSEAQPV 280
Query: 174 ILKCHELKHSEMLDS---------DEDELTLISKRLNRIWKHKQSKYRGSGKAKGKSESS 224
K E K E S D +E+ L+ K +I K + +GK S
Sbjct: 281 AFKATEEKKEEATPSRQPIDASKLDNEEMALVIKSFRQILKQR----------RGKDYKS 330
Query: 225 GQKKSSIKEVTCFECKESGHYKSDCP----------KLKKDKRPKKHFKTK--------- 265
KK C++C + GH+ + CP K + K KK++K K
Sbjct: 331 RSKK------VCYKCGKPGHFIAKCPISSDSDRGDDKKGRRKEKKKYYKKKGGDAHVCRE 384
Query: 266 -KSLMVTFDESESEDVDYDGEVQGLMD--------IVKDKGAESKDVVDSDSESEGDPNS 316
S + D S+ ED +GL+ + KD + K + ES D N+
Sbjct: 385 WDSDDSSSDSSDDEDAANIAVTKGLLFPNVGHKCLMAKDGKKKVKSKSSTKYESSSDDNA 444
Query: 317 DDENE----VFASFSTSELK---------HALSDIMDKYNSLLSK-HKKLKKDLSAASKT 362
DE + +FA+ + ++ + H D++D LL K +KK K +A S
Sbjct: 445 SDEEDNLRSLFANLNIAQKEKLNELVSAIHEKDDLLDSQEDLLIKENKKHVKVKNAYSLQ 504
Query: 363 PYEHEKIISDLKNDNHALVNSNSVLKNQIAKL 394
+ EK+ S+L + N L+N+ A L
Sbjct: 505 VEKCEKLSSELSTCREMIDN----LRNENASL 532
>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 296 bits (758), Expect = 4e-78
Identities = 148/258 (57%), Positives = 185/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K ++ND+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMMGELKYFLG QV Q EG
Sbjct: 1563 KTLENDLFVCQIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLREG 1622
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT+++L KF M ++ KTPM L+ + V QK+Y MIG+LLYL A
Sbjct: 1623 TFISQTKYTQDILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCA 1682
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL Y + + L GY DAD+
Sbjct: 1683 SRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADW 1742
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + RKSTS CQFLG +LVSWASK Q+++ALSTAEAEYI C Q+LWM+ L D
Sbjct: 1743 AGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRD 1802
Query: 1479 YQILESNISIYCDNTAAI 1496
Y + + + CDN +AI
Sbjct: 1803 YGYKLTKVPLLCDNESAI 1820
Score = 85.9 bits (211), Expect = 1e-14
Identities = 110/473 (23%), Positives = 191/473 (40%), Gaps = 106/473 (22%)
Query: 12 LWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDREY 71
+WD++ G + P G + ++ A + SQ A ILL+++S EEY K+ +
Sbjct: 159 IWDVVEYGVQVP--SIGDEDYDTDEVAQIEHFNSQ---AATILLASLSKEEYNKVQGLKN 213
Query: 72 AKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
AK I++ LK +HEG++ K +K ++ + F + E ++M++R + LV +R L
Sbjct: 214 AKEIWDLLKTAHEGDELTKITKRETIEGELGRFHLRQGEEPQDMYNRLKTLVNQVRNLGS 273
Query: 132 SYTTKYHVIRVIRSLPESWMPLVTSIELTRDVER---MSLEELIS--------------- 173
+ + V++VI P T ++L R R M+ EE+I
Sbjct: 274 TKWDDHEVVKVILRALIFLNP--TQVQLIRGNPRYPLMTPEEVIGNFVSFECMIKGSKKI 331
Query: 174 --------------ILKCHELKHSEMLDS---------DEDELTLISKRLNRIWKHKQSK 210
K E K E S D +E+ LI K +I K +
Sbjct: 332 NELDEPSTSEAQPVAFKATEEKKEESTPSRQPIDASKLDNEEMALIIKSFRQILKQR--- 388
Query: 211 YRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCP----------KLKKDKRPKK 260
KGK KK C++C + GH+ + CP K + K K+
Sbjct: 389 -------KGKDYKPRSKK------VCYKCGKPGHFIAKCPMSSDSDRGDDKKGRRKEKKR 435
Query: 261 HFKTK----------KSLMVTFDESESEDVDYDGEVQGLM------DIVKDKGAESKDVV 304
++K K S + D S+ ED +GL+ + K + K
Sbjct: 436 YYKKKGGDAHVCREWDSDESSSDSSDDEDAANIAVTKGLLFPNVGHKCLMAKDGKKKVKS 495
Query: 305 DSDSESEGDPNSDDENE------VFASFSTSELK---------HALSDIMDKYNS-LLSK 348
S ++ E + DD+NE +FA+ + + + H D++D L+ +
Sbjct: 496 KSSTKYETSSDEDDKNEEDNLRILFANLNMEQKEKLNELISAIHEKDDLLDSQEDFLIKE 555
Query: 349 HKKLKKDLSAASKTPYEHEKIISDLKNDNHALVNSNSVLKNQIAKLEEVIACD 401
+KK K +A + + EK+ S+L + L N + N +AK++ + D
Sbjct: 556 NKKHVKVKNAYALEREKCEKLSSELSTCHEILDNLRNENANLLAKVDSHVCID 608
>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 294 bits (753), Expect = 1e-77
Identities = 148/258 (57%), Positives = 185/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K ++ND+ + QIYVDDIIFGS N+S C+EFS +M +FEMSMMGELKYFLG QV Q EG
Sbjct: 734 KTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEG 793
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT+++L KF M ++ KTPM L+ + V QK+Y MIG+LLYL A
Sbjct: 794 TFICQTKYTQDILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCA 853
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDP+E+HLTAVKRILRYL T GL Y + + L GY DAD+
Sbjct: 854 SRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADW 913
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + RKSTS CQFLG +LVSWASK Q+++ALSTAEAEYI C Q+LWM+ L D
Sbjct: 914 AGCKINRKSTSGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLLD 973
Query: 1479 YQILESNISIYCDNTAAI 1496
Y + + + CDN +AI
Sbjct: 974 YGYKLTKVPLLCDNESAI 991
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 292 bits (747), Expect = 7e-77
Identities = 149/258 (57%), Positives = 182/258 (69%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K NDI + QIYVDDIIFGS N+S +EFS MM FEMSMMGELK+FLG+Q+ Q EG
Sbjct: 612 KRHDNDIFVCQIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEG 671
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KY K++LKKF M + TPM L+ + V QK+Y +IG+LLYL A
Sbjct: 672 TFICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCA 731
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQ+ P+E HL AVKRILRYL T NLGL Y K + L GY DADY
Sbjct: 732 SRPDIMLSVCMCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYPKGARFDLIGYADADY 791
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS CQFLG +LVSW+SK Q+++ALSTAEAEYI T C Q++WMK L D
Sbjct: 792 AGCKVDRKSTSGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGSCCAQLIWMKQTLRD 851
Query: 1479 YQILESNISIYCDNTAAI 1496
Y + S I + CDN +AI
Sbjct: 852 YGLNVSKIPLLCDNESAI 869
>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
Length = 2319
Score = 291 bits (744), Expect = 2e-76
Identities = 145/258 (56%), Positives = 185/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
+ + N++ + QIYVDDIIFGS N+ C+EFS++M FEMSMMGELKYFLG QV Q EG
Sbjct: 1494 RKVDNELFVCQIYVDDIIFGSTNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKEG 1553
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KYT+++LKKF M ++ AKTPM L+ + V QKLY MIG+LLYL A
Sbjct: 1554 TFLCQTKYTQDMLKKFGMEKAKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCA 1613
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQ++P++ HL AVKRILRYL T NLGL Y K + L GY D+DY
Sbjct: 1614 SRPDIMLSVCMCARFQANPKDCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSDY 1673
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKST+ CQFLG +LVSW+SK Q+ +ALSTAEAEYI C Q+LWMK L D
Sbjct: 1674 AGCKVDRKSTTGTCQFLGRSLVSWSSKKQNCVALSTAEAEYIAAGACCAQLLWMKQTLRD 1733
Query: 1479 YQILESNISIYCDNTAAI 1496
+ + I + CDN +AI
Sbjct: 1734 FGCEFNKIPLLCDNESAI 1751
Score = 104 bits (259), Expect = 3e-20
Identities = 88/354 (24%), Positives = 155/354 (42%), Gaps = 47/354 (13%)
Query: 1 LESFFLGFDADLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISY 60
++S +G LW+I+ G +P E EMT + + ++ +A +I+ ++
Sbjct: 142 MKSHLIGVHPSLWEIVNVGMYKPAQGE-------EMTPEMMQEVHRNAQAVSIIKGSLCP 194
Query: 61 EEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 120
EEY K+ RE A+ I+ L+MSHEG+ K K + +L + + ES++ +F R
Sbjct: 195 EEYRKVQGREDARDIWNILRMSHEGDPKAKRHRVEALESELARYDWTKGESLQSLFDRLM 254
Query: 121 LLVAGIRPLNKSYTTKYHVIRV-IRSLPESWMPLVTSIELTRDVERMSLEELISILKCHE 179
+LV IR L + V R+ +R+ E L I D E M+ +L + ++ HE
Sbjct: 255 VLVNKIRVLGSEDWSDSKVTRLFMRAYKEKDKSLARMIRDRDDYEDMTPHQLFAKIQQHE 314
Query: 180 LKHSEMLDSDEDELTLISKRLNRIWKHKQSKYRGSGKAKGKSESSGQKKSSI-------- 231
+ + + D LI+ + + K K K + + +SS + +++
Sbjct: 315 SEEAPI--KTRDSHALITNEQDNLKKSKDHKAKKVVETSSDEDSSSDEDTAMFIKTFKKF 372
Query: 232 -----------KEVTCFECKESGHYKSDCPKLKKDKRPKKHFKTKKSLMVTFDESESEDV 280
K+ C+EC ++GH+ +DCP KK++ KK +K K
Sbjct: 373 VRKNDKFQRKGKKRACYECGQTGHFIADCPN-KKEQEAKKEYKKDK-------------F 418
Query: 281 DYDGEVQGLMDIVKDKGAESKDVVDSDSESEGDPNSDDENEVFASFSTSELKHA 334
G+ +G K A + +SD ES +S +E EV A+ + A
Sbjct: 419 KKGGKTKGYFKKKKYGQAHIGEEWNSDDES----SSSEEEEVVANVAIQSTSSA 468
>gb|AAP53179.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533180|ref|NP_920892.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22748369|gb|AAN05371.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 286 bits (733), Expect = 3e-75
Identities = 143/258 (55%), Positives = 186/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FL +Q+ Q +G
Sbjct: 971 KIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLRLQIKQLKDG 1030
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLYH MIG+LLYLTA
Sbjct: 1031 TFLSQTKYIKDLLKRFGLEDAKPIKTPMVTNGHLDLDEGGKPVDLKLYHSMIGSLLYLTA 1090
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CARFQ P+E HL AVKRILRYLK ++ +GL Y K ++KL GY D+DY
Sbjct: 1091 SRPDIMFSVCMCARFQVAPKECHLVAVKRILRYLKHSSIIGLWYPKGAKFKLVGYSDSDY 1150
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS +CQ LG +LVSW+SK Q+++ALSTAEAEY+ C Q+LWMK L D
Sbjct: 1151 AGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQILLD 1210
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + + CDN +AI
Sbjct: 1211 YGISFTKTPLLCDNDSAI 1228
Score = 111 bits (278), Expect = 2e-22
Identities = 104/420 (24%), Positives = 185/420 (43%), Gaps = 77/420 (18%)
Query: 49 KARAILLSAISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE++++++ E A I+ L HEG + K++K L +YE+F M P
Sbjct: 31 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 90
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSL 168
+ES+ +M+ R ++V ++ L +YT +++R+LPE + LVT + + D+ RM+
Sbjct: 91 HESVNDMYGRLNVIVNDLKGLGANYTDLEIAQKMLRALPEKYETLVTML-INSDMSRMTP 149
Query: 169 EELISILK---CHELKHSEMLDSD---------------------------EDELTLISK 198
L+ + ++LK EM ++ E+E+ L+++
Sbjct: 150 ASLLGKINTNDMYKLKKKEMEEASPSKKCIALQTEVEDKGKGKVNEANEDLEEEIALLAR 209
Query: 199 RLNRIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKD--- 255
R N + K+ + RGS + ++ + S+++ CFEC E GH+ S CP D
Sbjct: 210 RFNDLLGRKKERGRGSNSNRRRNRRPNKTLSNLR---CFECGEKGHFASKCPSKDDDGDK 266
Query: 256 ------------KRPKKHFKTKKSLMVTFDESESEDVDYDGEVQGLMDIVKDKG------ 297
K+ KK K ++ + +D ++ E +G D K
Sbjct: 267 SSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNKESSASSGSEEEGGDDASSKKKKMAVVA 326
Query: 298 --------------AESKDVVDSDSESEGDPNSDDENEVFASF-STSELKHALSD-IMDK 341
A+ V S S+SE D + DD + + F S E HA S+ + K
Sbjct: 327 IKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDDVS--YDEFVSMFEELHAYSEKEIVK 384
Query: 342 YNSLLSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALVNSNSVLKNQIAKLEEVIACD 401
+ +L H LK L KT +E I + + H + S + A ++ I+CD
Sbjct: 385 FKALKKNHASLKV-LYEELKTSHERLTISHEKLKETHDNLLSTT---QHGAHIDIGISCD 440
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 286 bits (732), Expect = 4e-75
Identities = 142/258 (55%), Positives = 184/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FLG+Q+ Q +G
Sbjct: 1256 KIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELNFFLGLQIKQLKDG 1315
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F + ++ KTPM L+ + V KLY MIG+LLYLTA
Sbjct: 1316 TFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDKGGKPVDLKLYRSMIGSLLYLTA 1375
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K ++KL GY D+DY
Sbjct: 1376 SRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDY 1435
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
A + +RKSTS +CQ LG +LVSW+SK Q+++ALSTAEAEY+ C Q+LWMK L D
Sbjct: 1436 ASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLD 1495
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + + CDN AI
Sbjct: 1496 YGISFTKTPLLCDNDRAI 1513
Score = 110 bits (275), Expect = 4e-22
Identities = 121/539 (22%), Positives = 213/539 (39%), Gaps = 106/539 (19%)
Query: 12 LWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDREY 71
+W I+ G+ I + +T + + +A L +++S EE++++++ E
Sbjct: 37 IWSIVYVGFA---------ITGTPLTEIDHRNLQLNAQAMNALFNSLSQEEFDRVSNLET 87
Query: 72 AKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
A I+ L HEG + K++K L +YE+F M P+ES+ +M+ R ++V ++ L
Sbjct: 88 AYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFYMLPHESVNDMYGRLNVIVNDLKGLGA 147
Query: 132 SYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMS--------------------LEEL 171
+YT +++R+LPE + LVT + + D+ RM+ +EE
Sbjct: 148 NYTDLEVAQKMLRALPEKYETLVTML-INSDMSRMTPASLLGKINTNDMYKLKKKEMEEA 206
Query: 172 ISILKCHEL----------KHSEMLDSDEDELTLISKRLNRIWKHKQSKYRGSGKAKGKS 221
KC L K +E+ + E+E+ L+++R N + + ++ + RGS + ++
Sbjct: 207 SPSKKCIALQAEVEDKSKSKVNEVNEDLEEEMILLARRFNDLLERRKERGRGSNSNRRRN 266
Query: 222 ESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKD---------------KRPKKHFKTKK 266
+ S+++ CFE E GH+ S CP D K+ KK K +
Sbjct: 267 RRLNKTLSNLR---CFEYGEKGHFASKCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIE 323
Query: 267 SLMVTFDESESEDVDYDGEVQGLMDIVKDKG--------------------AESKDVVDS 306
+ + +D +E E +G D K A+ V S
Sbjct: 324 AFIGEWDSNEESSASSGSEEEGGDDASSKKKKMVVVAIKEAPSLFAPLCLMAKGSSKVTS 383
Query: 307 DSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEH 366
S+SE D + DD S EL ++ + K K L KD ++
Sbjct: 384 LSDSESDDDCDD-------VSYEELVSMFEELHAYSEKEIVKFKALNKDYASL------- 429
Query: 367 EKIISDLKNDNHALVNSNSVLK----------NQIAKLEEVIACDASDSKHESKYEKYFQ 416
+ + +LK N L S+ LK A ++ I+CD D
Sbjct: 430 DVLYEELKTSNERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVAS 489
Query: 417 RFLAKSVDRSLMASMIYGVSRNGMHGIDYSKPIRN----EPSMPKAKSLYECFVPSGTI 471
++ S D + S + + D S + N E KSL CF T+
Sbjct: 490 SSISTSCDDLMDMPSPCSSSSSCVSICDASLVVENNEFKEQVAKLNKSLERCFKGKNTL 548
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 286 bits (732), Expect = 4e-75
Identities = 141/258 (54%), Positives = 182/258 (69%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FLG+Q+ Q G
Sbjct: 1249 KIIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNG 1308
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLY MIG+LLYLT
Sbjct: 1309 TFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTV 1368
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++ +GL Y K ++KL GY D DY
Sbjct: 1369 SRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDPDY 1428
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS +CQ LG +LVSW+SK Q+++ALSTAE EY+ C Q+LWMK L D
Sbjct: 1429 AGCKVDRKSTSSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQTLLD 1488
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + + CDN AI
Sbjct: 1489 YGISFTKTPLLCDNDGAI 1506
Score = 92.0 bits (227), Expect = 1e-16
Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 35/225 (15%)
Query: 49 KARAILLSAISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE++++++ E A I+ L HEG + K++K L +YE+F M P
Sbjct: 65 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETFSMLP 124
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSL 168
+ES+ +M+ R ++V ++ L +YT +++R+LPE + LVT + + D+ RM+
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML-INSDMSRMTP 183
Query: 169 EELISILKCHELKHSEMLDSDEDELTLISKRLNRIWKHKQSKYRGSGKAKGKSESSGQKK 228
L+ + ++++ K RG G + + K
Sbjct: 184 ASLLGKINTNDMR----------------------------KERGKGSNSNRRRNRRPNK 215
Query: 229 SSIKEVTCFECKESGHYKSDCPKL-----KKDKRPKKHFKTKKSL 268
++ + CFEC E GH+ S CP K K+ +K K L
Sbjct: 216 -TLSNLRCFECGEKGHFASKCPSKDDDGDKSSKKKSGGYKLMKKL 259
>ref|XP_470878.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30017518|gb|AAP12940.1| transposon protein, putative,
CACTA, En/Spm sub-class [Oryza sativa (japonica
cultivar-group)]
Length = 1975
Score = 286 bits (731), Expect = 5e-75
Identities = 140/258 (54%), Positives = 186/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D ++ QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FLG+Q+ Q +G
Sbjct: 1646 KIIDDDFVVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMVGELSFFLGLQIKQLKDG 1705
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLYH MIG+LLYLTA
Sbjct: 1706 TFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYHSMIGSLLYLTA 1765
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CARFQ+ P++ HL AVKRILRYLK ++ +GL Y K ++K+ Y D DY
Sbjct: 1766 SRPDIMFSVCMCARFQAAPKKCHLVAVKRILRYLKHSSTIGLWYPKGAKFKIVSYSDLDY 1825
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
A + +RKSTS +CQ LG +LVSW+SK Q+++ALSTAEAEY+ C Q+LWMK L D
Sbjct: 1826 AVCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLD 1885
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + + CDN +AI
Sbjct: 1886 YGISFTKTPLLCDNDSAI 1903
Score = 49.3 bits (116), Expect = 0.001
Identities = 88/398 (22%), Positives = 139/398 (34%), Gaps = 126/398 (31%)
Query: 28 GKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDREYAKGIFESLKMSHEGNK 87
G I + +T + + +A L + +S EE +++++ E A + L HEG
Sbjct: 805 GFAITGTHLTGIDHRNLQLNAQAMNALFNCLSQEECDRVSNLETAYENWNKLAEIHEGTS 864
Query: 88 KVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLP 147
+ ++K L +YE+F M P+ES+ M+ R L
Sbjct: 865 EYNDAKLHFLKIQYETFSMLPHESVNAMYGR---------------------------LN 897
Query: 148 ESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDEDELTLISKRLNRIWKHK 207
SW + T+ ++LK EM ++ + +
Sbjct: 898 ASWGKINTN-------------------DMYKLKKKEMEETSPSKKCIA----------P 928
Query: 208 QSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPK---------------- 251
Q++ GK K CFEC E H+ S CP
Sbjct: 929 QAEVEDKGKGK-----------------CFECGEKRHFASKCPSKDDDGDKSSMKKSGGY 971
Query: 252 --LKKDKRPKKHFKTKKSLMVTFDE------SESEDVDYDGEVQGLMDIVKDKGA----- 298
+KK K+ K + VT +E SE E D + M +V K A
Sbjct: 972 KLMKKLKKEGKKIEVFIGDWVTNEESSASSGSEEEGGDDASSKKKKMAVVAIKEAPSPFA 1031
Query: 299 --------ESKDVVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSLLSKHK 350
SK SDSES+ D + +E+ + F E HA S+ + K K
Sbjct: 1032 PLCLMAKGSSKVTSLSDSESDDDCDYASYDELVSMF---EELHAYSE------KEIVKFK 1082
Query: 351 KLKKDLSAASKTPYEHEKIISDLKNDNHALVNSNSVLK 388
LKKD ++ E + +LK + L S+ LK
Sbjct: 1083 ALKKDHASL-------EVLYEELKTSHERLTISHEKLK 1113
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 285 bits (729), Expect = 9e-75
Identities = 141/258 (54%), Positives = 185/258 (71%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D + QIYVDDIIFGS N+ CKEF +MM EFEMSM+GEL +FLG+Q+ Q +G
Sbjct: 1211 KIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKDG 1270
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLY MIG+LLYLTA
Sbjct: 1271 TFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTA 1330
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CA FQ+ P+E HL AVKRILRYLK ++ +GL Y K ++KL GY D+DY
Sbjct: 1331 SRPDIMFSVCMCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSDSDY 1390
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +R STS +CQ LG +LVSW+SK Q+++ALSTAEAEY+ C Q+LWMK L D
Sbjct: 1391 AGCKVDRNSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLD 1450
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + + CDN +AI
Sbjct: 1451 YGISFTKTPLLCDNDSAI 1468
Score = 112 bits (279), Expect = 1e-22
Identities = 100/403 (24%), Positives = 177/403 (43%), Gaps = 81/403 (20%)
Query: 49 KARAILLSAISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE++++++ E A I+ L HEG + K++K L +YE+F M P
Sbjct: 65 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAKLHFLKIQYETFSMLP 124
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSL 168
+ES+ +M+ R ++V ++ L +YT +++R+LPE + LVT + + D+ RM+
Sbjct: 125 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETLVTML-INSDMSRMTP 183
Query: 169 EELISILK---CHELKHSEMLDSD-------------------------EDELTLISKRL 200
L+ + ++LK EM ++ E+E+ L+++R
Sbjct: 184 ASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAEVEDKGKVNDVNKNLEEEIALLARRF 243
Query: 201 NRIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKD----- 255
N ++ + +GS + +++ + S+++ CFEC E GH+ S CP D
Sbjct: 244 NDFLGRRKERGKGSNSNRRRNKRPNKTLSNLR---CFECGEKGHFASKCPSKDDDGDKSS 300
Query: 256 ----------KRPKKHFKTKKSLMVTFDESE---------SEDVDYDGEVQGLMDIVKDK 296
K+ KK K ++ + +D +E ED D + M +V K
Sbjct: 301 KKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSASSGSKEEDGDDASSKKKKMAVVAIK 360
Query: 297 GAES-----------KDVVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYNSL 345
A S V S S+SE D + DD S EL ++
Sbjct: 361 EAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDD-------ISYDELVSMFEELHAYSEKE 413
Query: 346 LSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALVNSNSVLK 388
+ K K LKKD ++ E + +LK + L S+ LK
Sbjct: 414 IVKFKALKKDHASL-------EVLYEELKTSHERLTISHEKLK 449
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 285 bits (729), Expect = 9e-75
Identities = 144/258 (55%), Positives = 177/258 (67%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFLG QV Q +G
Sbjct: 740 KTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDG 799
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT++LLK+F M ++ AKTPM + V QK Y MIG+LLYL A
Sbjct: 800 TFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCA 859
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDP+E HL AVKRILRYL T GL Y K + L GY D+DY
Sbjct: 860 SRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDY 919
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS CQFLG +LVSW SK Q+++ALSTAEAEY+ C Q+LWM+ L D
Sbjct: 920 AGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRD 979
Query: 1479 YQILESNISIYCDNTAAI 1496
+ S + + CDN +AI
Sbjct: 980 FGYNLSKVPLLCDNESAI 997
>gb|AAL75483.1| putative pol protein [Zea mays]
Length = 1553
Score = 284 bits (726), Expect = 2e-74
Identities = 141/258 (54%), Positives = 178/258 (68%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K D+ + QIYVDDIIFGS NQ C+EFS +M +FEM MMGEL YFLG QV Q +G
Sbjct: 1225 KTCNGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMPMMGELSYFLGFQVKQLKDG 1284
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT++L+K+F M ++ AKTPM ++ V QK Y MIG+LLYL A
Sbjct: 1285 TFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHIDLNKGGKSVDQKAYRSMIGSLLYLCA 1344
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDPRE HL AVKRILRYL T G+ Y K + L GY D+DY
Sbjct: 1345 SRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDY 1404
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS CQFLG +LVSW+SK Q+++ALSTAEAEY+ C Q+LWM+ L D
Sbjct: 1405 AGCKVDRKSTSGTCQFLGRSLVSWSSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRD 1464
Query: 1479 YQILESNISIYCDNTAAI 1496
+ + + + CDN +AI
Sbjct: 1465 FGYNLNKVPLLCDNESAI 1482
Score = 63.2 bits (152), Expect = 7e-08
Identities = 87/405 (21%), Positives = 166/405 (40%), Gaps = 56/405 (13%)
Query: 25 DEEGKKIPRSEMTADQKKLYSQHHK-------ARAILLSAISYEEYEKITDREYAKGIFE 77
D E KK S + + ++ + A +LL+++ +EY K++ + AK I++
Sbjct: 68 DYEKKKTVNSNFSFEYSRILQSSNAHLLSIPLATTVLLASLCRDEYHKVSGLDNAKQIWD 127
Query: 78 SLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKY 137
+LK+SHEGN +K + + F M E + ++R + LV IR + +
Sbjct: 128 TLKISHEGNDVTMLTKMELVEGELGRFAMIRGEEPTQTYNRLKTLVNKIRSYGSTQWMDH 187
Query: 138 HV----IRVIRSLPESWMPLVTSIELTRDVERMSLEELISI-LKCHELKHS--------E 184
V R + ++ D ++E +I LK K + E
Sbjct: 188 DVHQDDARGDTLKVRNGRMIIKEARYVDDALNGPIQEPQTIALKATRSKEALPSKVAQVE 247
Query: 185 MLDSDEDELTLISKRLNRIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGH 244
+ +++E+ LI KR ++ RG K+++ G++ +CF+C + GH
Sbjct: 248 AVGLNDEEMALIIKRF-------KTALRGRKDHPNKTKTKGKR-------SCFKCGKIGH 293
Query: 245 YKSDCPKLKKD------KRPKKHFKTKKSLMVTFDESESEDVDYDGEVQGLMDIVKDKGA 298
+ ++CP D + KK +K K E +S+ D + +GL +K A
Sbjct: 294 FIANCPDNDSDQEQGNKREKKKAYKKVKGEAHLGKEWDSDCSSSDSDNEGLAATAFNKSA 353
Query: 299 ----ESKDVVDSDSESEGDPNSDDENEVFASFSTSELKHALSD---IMDKYNSLL-SKHK 350
E + + + D D+ +EL AL+D +++K LL +H
Sbjct: 354 LFPNEHHTCLMAREKKGLDRTKVDK--------INELIDALNDKNRLLEKQEDLLYEEHD 405
Query: 351 KLKKDLSAASKTPYEHEKIISDLKNDNHALVNSNSVLKNQIAKLE 395
K + + + +E + +L ++ + S+ + AKLE
Sbjct: 406 KFVEAQKSLALEIKRNEMLSCELSTCRDSISSLKSINDDLSAKLE 450
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 283 bits (723), Expect = 4e-74
Identities = 143/258 (55%), Positives = 176/258 (67%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFLG QV Q +G
Sbjct: 1329 KTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDG 1388
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT++LLK+F M ++ AKTPM + V QK Y MIG+LLYL A
Sbjct: 1389 TFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCA 1448
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDP+E HL AVKRILRYL T GL Y K + L GY D+DY
Sbjct: 1449 SRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDY 1508
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS CQFLG +LVSW SK Q+++ALSTAEAEY+ C Q+LWM+ L D
Sbjct: 1509 AGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRD 1568
Query: 1479 YQILESNISIYCDNTAAI 1496
+ S + + CDN + I
Sbjct: 1569 FGYNLSKVPLLCDNESDI 1586
Score = 81.6 bits (200), Expect = 2e-13
Identities = 100/457 (21%), Positives = 186/457 (39%), Gaps = 71/457 (15%)
Query: 1 LESFFLGFDADLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISY 60
+ S +W+I+ E G K S+ + ++ +A +LL+++
Sbjct: 115 MRSHLFSLHPSIWEIV---------ENGMKFDSSDSPMLINEQIHRNAQATTVLLASLCR 165
Query: 61 EEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 120
EEY K++ + AK I+++LK+SHEGN +K + + F M E + ++R +
Sbjct: 166 EEYNKVSGLDNAKQIWDTLKISHEGNDVTMLTKMELVEGELGRFAMIRGEEPTQTYNRLK 225
Query: 121 LLVAGIRPLNKSYTTKYHVIR-VIRSLPESWMPLVTSIELTRDVERMSLEELIS--ILKC 177
LV IR + T + V+R ++RS LV +I +MS EE++ +
Sbjct: 226 TLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRYTKMSPEEILGKFVSGR 285
Query: 178 HELKHSEMLDS-------DEDELTLISKRLNRIWKHKQSKYRGSG--------------- 215
+K + +D + + L + R K ++ +G
Sbjct: 286 MMIKEARYVDDALNGPIHEPQPIALKASRSKEALPSKVAQIEAAGLNDEEMALIIKRFKT 345
Query: 216 KAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDK-------RPKKHFKTKKSL 268
+G+ E + K+ K +CF+C + GH+ ++CP D+ KK++K K
Sbjct: 346 ALRGRKEHPNKTKTKGKR-SCFKCGKIGHFIANCPDNDSDQEKKSGKWEKKKNYKKAKGE 404
Query: 269 MVTFDESESEDVDYDGEVQGLMDIVKDKG------------AESKDVVDSDS--ESEGDP 314
E +S+ D + +GL +K A+ K V +S S +
Sbjct: 405 AHIGKEWDSDCSSSDSDNEGLAATAFNKSTLFPNERHTCLMAKEKKVCTRNSTYASSSED 464
Query: 315 NSDDENEV-----FASFSTSELK--HALSDIMDKYNSLLSK--------HKKLKKDLSAA 359
S DE+EV F S++ + L D +++ N LL K H K + +
Sbjct: 465 ESSDEDEVDYSCLFKGLDRSKIDKINELIDALNEKNILLEKQEDSLYEEHDKFVEAQKSL 524
Query: 360 SKTPYEHEKIISDLKNDNHALVNSNSVLKNQIAKLEE 396
+ +E + ++ + ++ N S+ + AKL E
Sbjct: 525 ALEIKRNEMLACEVSTCHDSISNLKSINDDLNAKLVE 561
>gb|AAW57784.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1411
Score = 281 bits (720), Expect = 1e-73
Identities = 139/258 (53%), Positives = 185/258 (70%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D + QIYVD IIFGS N+ CKEF +MM EF+MSM+GEL +FLG+Q+ Q +G
Sbjct: 1083 KIIGDDFFVCQIYVDGIIFGSTNEVFCKEFGDMMSREFDMSMIGELSFFLGLQIKQLKDG 1142
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F + ++ KTPM L+ ++ V KLY MIG+LLYLTA
Sbjct: 1143 TFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTA 1202
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK ++N+GL Y K ++KL GY +DY
Sbjct: 1203 SRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSNIGLWYPKGAKFKLVGYSYSDY 1262
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
A + +RKSTS +CQ LG +LVSW+SK Q+++ALSTAEA+Y+ C Q+LWMK L D
Sbjct: 1263 ASCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVALSTAEAKYVSAGSCCAQLLWMKQTLLD 1322
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + + CDN +AI
Sbjct: 1323 YGISFTKTPLLCDNDSAI 1340
Score = 110 bits (276), Expect = 3e-22
Identities = 105/425 (24%), Positives = 184/425 (42%), Gaps = 81/425 (19%)
Query: 49 KARAILLSAISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEP 108
+A L +++S EE++++++ E A I+ L HE + K++K L +YE+F M P
Sbjct: 53 QAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEDTSEYKDAKLHFLKIQYETFSMLP 112
Query: 109 NESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMS- 167
+ES+ +M+ R ++V ++ L +YT +++R+LPE + LVT + + D+ RM+
Sbjct: 113 HESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTML-INSDMSRMTP 171
Query: 168 -------------------LEELISILKCHEL----------KHSEMLDSDEDELTLISK 198
+EE S KC L K +E+ + E+E+ L+++
Sbjct: 172 ASLLGKINTNDMYKLKKKEMEEASSSKKCIALQAEVEDKSKSKVNEVNEDLEEEMVLLAR 231
Query: 199 RLNRIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKD--- 255
+ N + ++ + RGS + ++ + S+++ CFEC E GH+ S CP D
Sbjct: 232 KFNDLLGRRKERGRGSNSNRRRNRRPNKTFSNLR---CFECCEKGHFASKCPSKDDDGDK 288
Query: 256 ------------KRPKKHFKTKKSLMVTFDESESEDVDYDGEVQGLMDIVKDKG------ 297
K+ KK K ++ + +D +E E +G D K
Sbjct: 289 SSKKKSGGYKLMKKLKKEGKKIEAFIGEWDSNEESSTSSGSEEEGGDDASSKKKKMAVVA 348
Query: 298 --------------AESKDVVDSDSESEGDPNSDDENEVFASFSTSELKHALSDIMDKYN 343
A+ V S S+SE D + DD S EL ++
Sbjct: 349 IKEAPSLFAPLCLMAKGSSKVTSLSDSESDDDCDD-------VSYDELVSMFEELHAYSE 401
Query: 344 SLLSKHKKLKKDLSAASKTPYEHEKIISDLKNDNHALV---NSNSVLKNQI-AKLEEVIA 399
+ K K LKKD A+ + YE KI + +H + + N + Q A ++ I+
Sbjct: 402 KEIVKFKALKKD-HASLEVLYEELKISHERLTISHEKLKEAHDNLLSTTQHGAHIDVGIS 460
Query: 400 CDASD 404
CD D
Sbjct: 461 CDLLD 465
>gb|AAD09019.1| copia protein [Zea mays]
Length = 447
Score = 281 bits (719), Expect = 1e-73
Identities = 142/258 (55%), Positives = 176/258 (68%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K D+ + QIYVDDIIFGS NQ C+EFS +M +FEMSMMGEL YFLG QV Q +
Sbjct: 165 KTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDD 224
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT++LLK+F M ++ AKTPM + V QK Y MIG+LLYL A
Sbjct: 225 TFITQTKYTQDLLKRFGMKDAKPAKTPMGTNGHTDLNKGGKSVDQKAYRSMIGSLLYLCA 284
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDP+E HL AVKRILRYL T G+ Y K + L GY D+DY
Sbjct: 285 SRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVTTPCFGIWYPKGSNFDLIGYLDSDY 344
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS CQFLG +LVSW SK Q+++ALSTAEAEY+ C Q+LWM+ L D
Sbjct: 345 AGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRD 404
Query: 1479 YQILESNISIYCDNTAAI 1496
+ S + + CDN +AI
Sbjct: 405 FGYNLSKVPLLCDNESAI 422
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 280 bits (717), Expect = 2e-73
Identities = 137/261 (52%), Positives = 187/261 (71%), Gaps = 1/261 (0%)
Query: 1237 LLKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTP 1296
+LK+ N L VQIYVDDIIFG + ++ +F+E M+ EFEMSMMGEL YFLG+Q+ QTP
Sbjct: 1090 VLKHGDNQ-LFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQIKQTP 1148
Query: 1297 EGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYL 1356
+GT++HQ+KYTK+LL++F M TP+ T +L+ ++ V QK Y MIG+LLYL
Sbjct: 1149 QGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYL 1208
Query: 1357 TASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDA 1416
TASRPDI F+V LCARFQ+ PR +H AVKRI+RYL T G+ Y + LSGY DA
Sbjct: 1209 TASRPDIQFAVCLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDA 1268
Query: 1417 DYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQL 1476
D+ G R +RKSTS C FLG++L++W+S+ QS++A STAE+EY+ A C +Q+LW+ L
Sbjct: 1269 DFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTL 1328
Query: 1477 EDYQILESNISIYCDNTAAIH 1497
+DY I + ++CDNT+AI+
Sbjct: 1329 KDYGITFEKVPLFCDNTSAIN 1349
Score = 106 bits (265), Expect = 5e-21
Identities = 106/477 (22%), Positives = 204/477 (42%), Gaps = 92/477 (19%)
Query: 1 LESFFLGFDADLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISY 60
++S+ + + D+W + Y IP + T K + + KAR IL S IS
Sbjct: 26 MQSYIMAENYDIWRKVSHPYV---------IPEAINTDALKTEFENNCKARNILSSGISR 76
Query: 61 EEYEKITDREYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQ 120
+Y+++ E A I+ +LK H+G K +KE + ++Y F M+ E++++ SRF
Sbjct: 77 SDYDRVAHLETAHEIWNALKNFHQGTKNIKELRRDLFKKEYIKFEMKSGEALDDYLSRFN 136
Query: 121 LLVAGIRPLNKSYTTKYHVIRVIRSLPES-----WMPLVTSIELTRDVERMSLEELISIL 175
+++ +R ++ SY Y + R W VTSI+ + ++ ++L+ L + L
Sbjct: 137 KILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTSIQESVNMSTLTLDSLYTKL 196
Query: 176 KCHEL---------KHSEMLDS------------------------------DEDELTLI 196
K E+ K S ++ S +E++L L+
Sbjct: 197 KTREMNILSRKVDSKSSALVSSSSSLIVDASSSMPSFLAAFNATSDDQLEQIEEEDLALV 256
Query: 197 SKRLNRIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCPKLKKDK 256
+ R+ R + +++ RG CFEC H +S CPKL + K
Sbjct: 257 ANRIARAMNNARNRKRGGPN------------------RCFECGSIDHLRSHCPKLGRGK 298
Query: 257 RPKKH-FKTKKSLMVTFDESESEDVDYDGEVQGLMDIVKDKGAESKDVVDSDSESEGDPN 315
R K KT + +++S+ + +++ L + A + + D D ES D
Sbjct: 299 REDKDGEKTNNNKPNNYNKSKGS--NQGRKMENLRKAFQQVCAAFEPLSDVDGESGDDDK 356
Query: 316 SDDENEV-FASFSTSELKHALSDIMDKYNSLLSKHKKLKKDLSAASKTPYEHEKIISDLK 374
+ ++V F + S+ ++ +++ S ++ LSA +K K+ SD K
Sbjct: 357 GKNVSDVCFMARGESDTEYEDNEV--------SAFEEAINILSAKNK------KVFSDGK 402
Query: 375 NDNHALVNSNSVLKNQ---IAKLEEVIACDASDSKHESKYEKYFQRFLAKSVDRSLM 428
+ + +++ + VL + +A+ E V D+ DS+H + + +F S S++
Sbjct: 403 KNLNMILDQSKVLVLEVALVARKENVWIVDSGDSRHMTGDKNWFSSLKKASKTESIV 459
>gb|AAL35398.1| Opie2 pol [Zea mays]
Length = 691
Score = 280 bits (716), Expect = 3e-73
Identities = 141/258 (54%), Positives = 176/258 (67%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K D+ + QIYVDDIIFGS NQ+ C+EFS +M +FEMSMMGEL YFLG QV Q +G
Sbjct: 363 KTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDG 422
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT++L+K+F M ++ AKTPM + V QK Y IG+LLYL A
Sbjct: 423 TFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCA 482
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDPRE HL AVKRILRYL T G+ Y K + L GY D+DY
Sbjct: 483 SRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDY 542
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
A + +RKSTS CQFLG +LVSW SK Q+++ALSTAEAEY+ C Q+LWM+ L D
Sbjct: 543 ARCKVDRKSTSRTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRD 602
Query: 1479 YQILESNISIYCDNTAAI 1496
+ S + + CDN +AI
Sbjct: 603 FGYNLSEVPLLCDNESAI 620
>gb|AAS98452.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1005
Score = 280 bits (715), Expect = 4e-73
Identities = 139/258 (53%), Positives = 184/258 (70%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K I +D + QIYVDDIIFGS N+ CKEF +MM EFEMSM+ EL +FLG+Q+ Q +G
Sbjct: 677 KIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIRELSFFLGLQIKQLKDG 736
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T++ Q+KY K+LLK+F++ ++ KTPM + ++ V KLY MIG+LLYLTA
Sbjct: 737 TFVSQTKYIKDLLKRFSLEDAKPIKTPMATNGHFDLDEGGKPVDLKLYRSMIGSLLYLTA 796
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+FSV +CARFQ+ P+E HL AVKRILRYLK + +GL Y K ++KL GY D+DY
Sbjct: 797 SRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSCTIGLWYPKGAKFKLVGYSDSDY 856
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKSTS +CQ LG +LVSW+SK Q+++ LSTAEAEY+ Q+LWMK L D
Sbjct: 857 AGCKVDRKSTSGSCQMLGRSLVSWSSKKQNSVDLSTAEAEYVSAGSYCAQLLWMKQTLLD 916
Query: 1479 YQILESNISIYCDNTAAI 1496
Y I + ++ CDN +AI
Sbjct: 917 YGISFTKTTLLCDNDSAI 934
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 279 bits (714), Expect = 5e-73
Identities = 141/258 (54%), Positives = 176/258 (67%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K D+ + QIYVDDIIFGS NQ+ C+EFS +M +FEMSMMGEL YFLG QV Q +G
Sbjct: 720 KTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDG 779
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KYT++L+K+F M ++ AKTPM + V QK Y IG+LLYL A
Sbjct: 780 TFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCA 839
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQSDPRE HL AVKRILRYL T G+ Y K + L GY D+DY
Sbjct: 840 SRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDY 899
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
A + +RKSTS CQFLG +LVSW SK Q+++ALSTAEAEY+ C Q+LWM+ L D
Sbjct: 900 ARCKVDRKSTSRMCQFLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRD 959
Query: 1479 YQILESNISIYCDNTAAI 1496
+ S + + CDN +AI
Sbjct: 960 FGYNLSEVPLLCDNESAI 977
>emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar-group)]
Length = 1510
Score = 278 bits (710), Expect = 1e-72
Identities = 140/258 (54%), Positives = 179/258 (69%)
Query: 1239 KNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEG 1298
K ++D+ I QIYVDDIIFGS N S C+EFS +M FEMSMMGEL +FL +QV Q EG
Sbjct: 1177 KKFKSDLFICQIYVDDIIFGSTNASFCEEFSSIMTKRFEMSMMGELTFFLWLQVKQAQEG 1236
Query: 1299 TYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTA 1358
T+I Q+KY K++LKKF M ++ KTPM L+ +D V QK+Y MIG+LLYL A
Sbjct: 1237 TFISQTKYVKDILKKFGMEDAKPIKTPMPTNGHLDLDDNGKCVDQKVYRSMIGSLLYLCA 1296
Query: 1359 SRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADY 1418
SRPDI+ SV +CARFQ++P+E HL AVKRI RYL T NLGL Y K +++L GY D+DY
Sbjct: 1297 SRPDIMLSVCMCARFQAEPKECHLIAVKRIQRYLVHTPNLGLWYPKGCDFELLGYSDSDY 1356
Query: 1419 AGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLED 1478
AG + +RKS + CQFLG +LVSW K Q++I LST EAEY+ C Q+LWMK L+D
Sbjct: 1357 AGCKVDRKSITGTCQFLGPSLVSWFPKKQNSIVLSTTEAEYVAAGSCCAQLLWMKQTLKD 1416
Query: 1479 YQILESNISIYCDNTAAI 1496
+ + + CDN +AI
Sbjct: 1417 FGYNFTKTPLLCDNESAI 1434
Score = 114 bits (286), Expect = 2e-23
Identities = 85/297 (28%), Positives = 153/297 (50%), Gaps = 28/297 (9%)
Query: 12 LWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDREY 71
+W ++ G + P D+ E+T++Q++L ++ +A +LS +S EE+ K+ E
Sbjct: 12 IWKVVCTGVDVPHDD-------MELTSEQEQLIHRNAQASNAILSTLSLEEFNKVDGLEE 64
Query: 72 AKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNK 131
AK I ++L+++HEG+ V+E+K L + F+M+ E+ +EM+ R +LV I+ L
Sbjct: 65 AKEICDTLQLAHEGSPAVREAKIELLEGRLGRFVMDDKETPQEMYDRMMILVNKIKGLGS 124
Query: 132 SYTTKYHVI-RVIRSLPESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDE 190
T + V+ R++R LV+ I +D +R++L +++ + HE++ E
Sbjct: 125 EDMTNHFVVKRLLREFGPRNPTLVSMIREKKDFKRLTLSDILGRIVSHEMQ--------E 176
Query: 191 DELTLISKRLNRIWKHKQSKYRGSGKAKGKSESSGQKKSSIKEVTCFECKESGHYKSDCP 250
+E +R+ R +KH R SG KG+ + KK S + CF C E GH+ +D P
Sbjct: 177 EEARKTRRRVKR-FKH---FLRKSGYGKGRKDDDKGKKQSKR--ACFNCGEYGHFIADFP 230
Query: 251 KLKKDKRPKKHFKTKKSLMVTFDESESEDVDYDGEVQGLMDIVKDKGAESKDVVDSD 307
K + K K +++ + E+ +V Y G+ + VK K + KD VD +
Sbjct: 231 KSNEAKAKGGKKKPERAHVA---EAHMPEVWYSGDEED--PEVKPK-PKPKDKVDGE 281
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.347 0.151 0.513
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,268,119,676
Number of Sequences: 2540612
Number of extensions: 87092806
Number of successful extensions: 516269
Number of sequences better than 10.0: 2221
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 1409
Number of HSP's that attempted gapping in prelim test: 503302
Number of HSP's gapped (non-prelim): 9046
length of query: 1564
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1422
effective length of database: 502,593,490
effective search space: 714687942780
effective search space used: 714687942780
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0134.10