BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0131.12
(78 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 54 1e-06
gb|AAP54104.1| hypothetical protein [Oryza sativa (japonica cult... 52 4e-06
gb|AAK54292.1| putative helicase [Oryza sativa (japonica cultiva... 52 4e-06
gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultiva... 51 7e-06
gb|AAV44035.1| putative helicase [Oryza sativa (japonica cultiva... 47 1e-04
gb|AAU44208.1| unknown protein [Oryza sativa (japonica cultivar-... 47 1e-04
dbj|BAB11364.1| helicase [Arabidopsis thaliana] 46 2e-04
ref|NP_198527.1| hypothetical protein [Arabidopsis thaliana] 46 2e-04
ref|NP_178583.2| hypothetical protein [Arabidopsis thaliana] 45 4e-04
ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana] 45 5e-04
gb|AAG51717.1| unknown protein; 11471-16325 [Arabidopsis thalian... 45 5e-04
ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana] 44 0.001
ref|NP_175704.1| hypothetical protein [Arabidopsis thaliana] gi|... 44 0.001
gb|AAD15468.1| putative helicase [Arabidopsis thaliana] gi|25353... 43 0.002
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 43 0.002
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 43 0.002
emb|CAB81576.1| putative protein [Arabidopsis thaliana] gi|15229... 41 0.007
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 39 0.026
gb|AAD25596.1| putative helicase [Arabidopsis thaliana] gi|25353... 39 0.034
ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana] 39 0.034
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 53.5 bits (127), Expect = 1e-06
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 4 GNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPIL 63
G+ LR FA LL+++ + P+HVW+ TW LLA DI+++ R P + T + L
Sbjct: 1155 GDYLRNFFAMLLLSDSLARPEHVWSETWHLLAEDIENKKREDFKNPDLKLTLAEIRNYTL 1214
Query: 64 LKIDNHLQSNGKSLK 78
+I+ + NG +LK
Sbjct: 1215 QEIEKIMLRNGATLK 1229
>gb|AAP54104.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37535030|ref|NP_921817.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1477
Score = 52.0 bits (123), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SG +LR+LFA++L + +P +W +W+ L+ DIQH L P T S K
Sbjct: 922 SGMKLRQLFATVLCHCEVTDPKRLWESSWEKLSKDIQHTQSWALNFPTSCLTPSHRRKCA 981
Query: 63 LLKIDNHLQSNGKSLK 78
L++I+ +++ GKSLK
Sbjct: 982 LIEIEKNMRQAGKSLK 997
>gb|AAK54292.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1501
Score = 52.0 bits (123), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SG +LR+LFA++L + +P +W +W+ L+ DIQH L P T S K
Sbjct: 960 SGMKLRQLFATVLCHCEVTDPKRLWESSWEKLSKDIQHTQSWALNFPTSCLTPSHRRKCA 1019
Query: 63 LLKIDNHLQSNGKSLK 78
L++I+ +++ GKSLK
Sbjct: 1020 LIEIEKNMRQAGKSLK 1035
>gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultivar-group)]
gi|37535038|ref|NP_921821.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
gi|14140296|gb|AAK54302.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
Length = 1573
Score = 51.2 bits (121), Expect = 7e-06
Identities = 28/76 (36%), Positives = 43/76 (55%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SG EL++LFA++L + +P +W W+ L+ DIQH L P T S K
Sbjct: 976 SGIELQQLFATILCHCEVTDPKSLWESIWEELSKDIQHTQSWLLNFPASCLTPSHKRKCA 1035
Query: 63 LLKIDNHLQSNGKSLK 78
L++I+ +++ GKSLK
Sbjct: 1036 LIEIEKNMRQAGKSLK 1051
>gb|AAV44035.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1634
Score = 47.4 bits (111), Expect = 1e-04
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SGN+LR LF ++L + +P +W W+ L+ DI+++ R L P + T
Sbjct: 1038 SGNQLRHLFTTILCHCEVTDPKRIWESCWEDLSEDIEYKQRKNLNYPTLRLTEQQKKGHA 1097
Query: 63 LLKIDNHLQSNGKSLK 78
L++I+ ++ GK+L+
Sbjct: 1098 LIEIEKLMRQAGKTLE 1113
>gb|AAU44208.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1525
Score = 47.0 bits (110), Expect = 1e-04
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SGN+LR LF ++L + +P +W W+ L DI+++ R L P + T
Sbjct: 929 SGNQLRHLFTTILCHCEVTDPKRIWESCWEDLGEDIEYKQRKNLNYPTLRLTEQQKKGHA 988
Query: 63 LLKIDNHLQSNGKSLK 78
L++I+ ++ GK+L+
Sbjct: 989 LIEIEKLMRQAGKTLE 1004
>dbj|BAB11364.1| helicase [Arabidopsis thaliana]
Length = 1523
Score = 46.2 bits (108), Expect = 2e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SG LR+LF +L + + +P++VW TW+ L+ DIQ+ R +P +I +
Sbjct: 954 SGGYLRQLFVIML--DALISPENVWAATWQHLSEDIQNNKRKYFNRPDLILSDEEKKLYA 1011
Query: 63 LLKIDNHLQSNGKSL 77
L +ID+ L+ NG SL
Sbjct: 1012 LQEIDHILRRNGTSL 1026
>ref|NP_198527.1| hypothetical protein [Arabidopsis thaliana]
Length = 1307
Score = 46.2 bits (108), Expect = 2e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SG LR+LF +L + + +P++VW TW+ L+ DIQ+ R +P +I +
Sbjct: 802 SGGYLRQLFVIML--DALISPENVWAATWQHLSEDIQNNKRKYFNRPDLILSDEEKKLYA 859
Query: 63 LLKIDNHLQSNGKSL 77
L +ID+ L+ NG SL
Sbjct: 860 LQEIDHILRRNGTSL 874
>ref|NP_178583.2| hypothetical protein [Arabidopsis thaliana]
Length = 1238
Score = 45.4 bits (106), Expect = 4e-04
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
SG LR+LF +L + + +P++VW TW+ L+ DIQ+E + +P +I +
Sbjct: 736 SGWYLRQLFVIML--DALISPENVWAATWQHLSEDIQNEKKKYFNRPDLILSDEEKKVYA 793
Query: 63 LLKIDNHLQSNGKSL 77
L +ID+ L+ NG SL
Sbjct: 794 LQEIDHILRRNGTSL 808
>ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana]
Length = 1231
Score = 45.1 bits (105), Expect = 5e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
S +RRLF +L++ + P+ VW+ TWK+L+ DI+ + R +P + + +
Sbjct: 689 SAKYVRRLFVIMLLSESLTKPEMVWDETWKILSEDIERKKRKEWKRPDLQLSDEERQQYC 748
Query: 63 LLKIDNHLQSNGKSL 77
L +I L NG SL
Sbjct: 749 LQEIARLLTKNGVSL 763
>gb|AAG51717.1| unknown protein; 11471-16325 [Arabidopsis thaliana]
gi|25404482|pir||C96668 unknown protein F15H21.18
[imported] - Arabidopsis thaliana
Length = 753
Score = 45.1 bits (105), Expect = 5e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
S +RRLF +L++ + P+ VW+ TWK+L+ DI+ + R +P + + +
Sbjct: 405 SAKYVRRLFVIMLLSESLTKPEMVWDETWKILSEDIERKKRKEWKRPDLQLSDEERQQYC 464
Query: 63 LLKIDNHLQSNGKSL 77
L +I L NG SL
Sbjct: 465 LQEIARLLTKNGVSL 479
>ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana]
Length = 1099
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 4 GNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPIL 63
G+ LR LF+ +L+ + P++VW ++L DI+ + R P ++ T + L
Sbjct: 502 GDHLRNLFSMMLLDKCLARPEYVWEKCSRILIEDIETKKRKQYDNPDLVLTDAERRNYAL 561
Query: 64 LKIDNHLQSNGKSLK 78
L+I++ L NG +L+
Sbjct: 562 LEIEDMLLCNGSTLQ 576
>ref|NP_175704.1| hypothetical protein [Arabidopsis thaliana]
gi|12324645|gb|AAG52281.1| hypothetical protein;
100703-104276 [Arabidopsis thaliana]
Length = 996
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/75 (30%), Positives = 39/75 (51%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPI 62
S +RRLF +L++ + P+ VW+ TW++L+ DI+ R +P + + +
Sbjct: 427 SAKYVRRLFVIMLLSESLTKPEMVWDETWRILSEDIERRKRKEWKRPDLQLSDEERQQYC 486
Query: 63 LLKIDNHLQSNGKSL 77
L +I L NG SL
Sbjct: 487 LQEIARLLTKNGVSL 501
>gb|AAD15468.1| putative helicase [Arabidopsis thaliana] gi|25353667|pir||F84517
probable helicase [imported] - Arabidopsis thaliana
Length = 1265
Score = 43.1 bits (100), Expect = 0.002
Identities = 23/61 (37%), Positives = 33/61 (53%), Gaps = 3/61 (4%)
Query: 8 RRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPILLKID 67
+ FA LL+++ ++ P HVW+ TW +LA DI + R P I F KP + ID
Sbjct: 717 QEFFAMLLLSDSLSRPAHVWSQTWHILAEDILKKKRDEFKNPEDIDEF---PKPTIDGID 773
Query: 68 N 68
N
Sbjct: 774 N 774
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 42.7 bits (99), Expect = 0.002
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 4 GNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPIL 63
G+ LR F+ +L+++ + P+HVW+ TW LL+ DI + R + T + L
Sbjct: 832 GDYLRNFFSMMLLSDSLARPEHVWSETWHLLSEDILIKKRDEFKNQELTLTEAQIQNYTL 891
Query: 64 LKIDNHLQSNGKSLK 78
+I+ + NG +L+
Sbjct: 892 QEIEKIMLFNGATLE 906
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 42.7 bits (99), Expect = 0.002
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 4 GNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQPGMIPTFSLSSKPIL 63
G+ LR F+ +L+++ + P+HVW+ TW LL+ DI + R + T + L
Sbjct: 823 GDYLRNFFSMMLLSDSLARPEHVWSETWHLLSEDILIKKRDEFKNQELTLTEAQIQNYTL 882
Query: 64 LKIDNHLQSNGKSLK 78
+I+ + NG +L+
Sbjct: 883 QEIEKIMLFNGATLE 897
>emb|CAB81576.1| putative protein [Arabidopsis thaliana]
gi|15229268|ref|NP_189921.1| helicase-related
[Arabidopsis thaliana] gi|11358366|pir||T47377
hypothetical protein T5C2.50 - Arabidopsis thaliana
Length = 830
Score = 41.2 bits (95), Expect = 0.007
Identities = 15/38 (39%), Positives = 26/38 (67%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQH 40
S +RRLF +L++ + P+ VW+ TW++L+ DI+H
Sbjct: 94 SAKYVRRLFVIMLLSESLTKPEMVWDETWRILSKDIEH 131
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 39.3 bits (90), Expect = 0.026
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLAND 37
SG +RRLFA LL + ++ P HVW TW L++D
Sbjct: 728 SGRYMRRLFAQLLTSESLSTPYHVWLNTWNQLSDD 762
>gb|AAD25596.1| putative helicase [Arabidopsis thaliana] gi|25353661|pir||H84464
probable helicase [imported] - Arabidopsis thaliana
Length = 1219
Score = 38.9 bits (89), Expect = 0.034
Identities = 27/81 (33%), Positives = 44/81 (53%), Gaps = 8/81 (9%)
Query: 3 SGNELRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQP------GMIPTFS 56
SG LR+LF +L + + +P++VW TW+ L+ DIQ+E + +P +I +
Sbjct: 626 SGWYLRQLFVIML--DALISPENVWAATWQHLSEDIQNEKKKYFNRPVTCLFTDLILSDE 683
Query: 57 LSSKPILLKIDNHLQSNGKSL 77
L +ID+ L+ NG SL
Sbjct: 684 EKKVYALQEIDHILRRNGTSL 704
>ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana]
Length = 1473
Score = 38.9 bits (89), Expect = 0.034
Identities = 17/43 (39%), Positives = 26/43 (59%)
Query: 7 LRRLFASLLITNIMNNPDHVWNITWKLLANDIQHEYRGTLTQP 49
+R+LF +LI +++P VW TWK+L+ D Q + R L P
Sbjct: 927 VRKLFVIMLIFESLSSPAVVWEHTWKILSEDFQRKVRDKLKCP 969
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,853,114
Number of Sequences: 2540612
Number of extensions: 4526629
Number of successful extensions: 9003
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8973
Number of HSP's gapped (non-prelim): 40
length of query: 78
length of database: 863,360,394
effective HSP length: 54
effective length of query: 24
effective length of database: 726,167,346
effective search space: 17428016304
effective search space used: 17428016304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0131.12