BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0128.2
(265 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_910568.1| Similar to Arabidopsis thaliana chromosome II B... 46 0.001
ref|NP_910569.1| Similar to Zea mays putative AC9 transposase. (... 44 0.006
dbj|BAD44809.1| hypothetical protein [Oryza sativa (japonica cul... 44 0.006
ref|XP_475680.1| hypothetical protein [Oryza sativa (japonica cu... 40 0.066
ref|NP_915635.1| P0505D12.16 [Oryza sativa (japonica cultivar-gr... 40 0.087
emb|CAE03878.1| OSJNBb0015N08.6 [Oryza sativa (japonica cultivar... 40 0.087
gb|AAV25048.1| putative polyprotein [Oryza sativa (japonica cult... 40 0.087
ref|ZP_00285484.1| hypothetical protein Efae03002600 [Enterococc... 39 0.11
ref|XP_471081.1| OSJNBb0089K24.7 [Oryza sativa (japonica cultiva... 39 0.15
ref|NP_918881.1| P0025H06.19 [Oryza sativa (japonica cultivar-gr... 39 0.15
ref|NP_918693.1| P0560B06.7 [Oryza sativa (japonica cultivar-gro... 39 0.15
ref|NP_910208.1| hypothetical protein [Oryza sativa (japonica cu... 39 0.15
dbj|BAD88339.1| membrane-associated protein-like [Oryza sativa (... 39 0.15
ref|NP_916124.1| P0046E05.7 [Oryza sativa (japonica cultivar-gro... 39 0.19
emb|CAE75911.1| OSJNBb0115I21.14 [Oryza sativa (japonica cultiva... 39 0.19
gb|AAT85260.1| hypothetical protein [Oryza sativa (japonica cult... 39 0.19
dbj|BAD54688.1| hypothetical protein [Oryza sativa (japonica cul... 39 0.19
gb|AAX96746.1| retrotransposon protein, putative, unclassified [... 39 0.19
gb|AAX95001.1| retrotransposon protein, putative, unclassified [... 39 0.19
ref|XP_479434.1| hypothetical protein [Oryza sativa (japonica cu... 38 0.25
>ref|NP_910568.1| Similar to Arabidopsis thaliana chromosome II BAC F13B15 genomic
sequence, putative non-LTR retroelement reverse
transcriptase. (AC006300) [Oryza sativa (japonica
cultivar-group)]
Length = 1285
Score = 46.2 bits (108), Expect = 0.001
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 114 STSEDWRTSDKCIDDKCLFRSVWNSVQSLKNNRLTARGFTRVNAETGHNDDLSLNIAPCD 173
ST D R +D D RSV + + S + T V + G + + P
Sbjct: 231 STDPDHRRADAAAADSPFPRSVADHIAS---SLRTQEAVDAVCKKYGVLAEFAAR--PAG 285
Query: 174 DNEVVTLKPSGADGEPAWFYLHGYIFNELFMKLPFSTFVCDVLTFLNVAPCQLLPNAWGF 233
D + P GA A Y E M+LP F C++L L VAP Q+ PN W
Sbjct: 286 DLRACSAPPPGA----ACVYARAL---EAGMRLPLHPFACELLRHLGVAPSQITPNGWRV 338
Query: 234 TRCFELLCEPLNFGPPYPLFLFFYKISIAK 263
F LL P +F F+++ ++K
Sbjct: 339 VAGFLLLSHHAAAPPSLAVFRRFFRLFLSK 368
>ref|NP_910569.1| Similar to Zea mays putative AC9 transposase. (P03010) [Oryza
sativa (japonica cultivar-group)]
Length = 947
Score = 43.5 bits (101), Expect = 0.006
Identities = 21/51 (41%), Positives = 23/51 (44%)
Query: 201 ELFMKLPFSTFVCDVLTFLNVAPCQLLPNAWGFTRCFELLCEPLNFGPPYP 251
E M+LP F VL +AP QL PNAW F LC PP P
Sbjct: 95 ERLMRLPLQPFFAAVLAHFGLAPSQLTPNAWRLLAGFAALCRRAGVAPPPP 145
>dbj|BAD44809.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 569
Score = 43.5 bits (101), Expect = 0.006
Identities = 21/51 (41%), Positives = 23/51 (44%)
Query: 201 ELFMKLPFSTFVCDVLTFLNVAPCQLLPNAWGFTRCFELLCEPLNFGPPYP 251
E M+LP F VL +AP QL PNAW F LC PP P
Sbjct: 95 ERLMRLPLQPFFAAVLAHFGLAPSQLTPNAWRLLAGFAALCRRAGVAPPPP 145
>ref|XP_475680.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|48475205|gb|AAT44274.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 928
Score = 40.0 bits (92), Expect = 0.066
Identities = 34/101 (33%), Positives = 46/101 (44%), Gaps = 10/101 (9%)
Query: 171 PCDDNEVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQL 226
P E+VTL +G PA Y +F F PFS+F DVL F ++ L
Sbjct: 34 PATGREIVTL----GEGRPAPCYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHL 89
Query: 227 LPNAWGFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
PNA F LCE + P LF +F+ + S++ PS
Sbjct: 90 TPNAVMTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>ref|NP_915635.1| P0505D12.16 [Oryza sativa (japonica cultivar-group)]
Length = 953
Score = 39.7 bits (91), Expect = 0.087
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y ++F F PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGRPAPDYPGRFVFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>emb|CAE03878.1| OSJNBb0015N08.6 [Oryza sativa (japonica cultivar-group)]
gi|50928533|ref|XP_473794.1| OSJNBb0015N08.6 [Oryza
sativa (japonica cultivar-group)]
Length = 949
Score = 39.7 bits (91), Expect = 0.087
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F N+ L PNA
Sbjct: 39 EIVTL----GEGRPAPDYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYNLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>gb|AAV25048.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1093
Score = 39.7 bits (91), Expect = 0.087
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F N+ L PNA
Sbjct: 39 EIVTL----GEGRPAPDYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYNLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>ref|ZP_00285484.1| hypothetical protein Efae03002600 [Enterococcus faecium]
Length = 660
Score = 39.3 bits (90), Expect = 0.11
Identities = 32/151 (21%), Positives = 59/151 (38%), Gaps = 2/151 (1%)
Query: 61 SLNSDSDDGDKTTVSQEVITVDSDSESHNSPSSSDPTQKRTVSITSHLSTGNPSTSEDWR 120
S +SDS D TT + SDS S +S T S ++ S + ST
Sbjct: 507 SASSDSTDTSTTTSDSTDTSASSDSTDTTSTTSDSSDSSTTTSDSTDTSASSDSTDTSST 566
Query: 121 TSDKCIDDKCLFRSVWNSVQSLKNNRLTARGFTRVNAETGHNDDLSLNIAPCDDNEVVTL 180
TSD D ++ + + R + F++ +++ N +L+ + + N+
Sbjct: 567 TSDS--SDSSTSSDSTDTSSTTSDTRHASVSFSKTSSDNRTNFNLTNKTSNDNGNKSKRA 624
Query: 181 KPSGADGEPAWFYLHGYIFNELFMKLPFSTF 211
P W L G I + +++ F ++
Sbjct: 625 LPKTGSQSNNWITLAGVILLVIGLRITFMSY 655
>ref|XP_471081.1| OSJNBb0089K24.7 [Oryza sativa (japonica cultivar-group)]
gi|38344101|emb|CAD39397.2| OSJNBb0089K24.7 [Oryza
sativa (japonica cultivar-group)]
Length = 1052
Score = 38.9 bits (89), Expect = 0.15
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL G PA Y +F F PFS+F DVL F N+ L PNA
Sbjct: 39 EIVTL----GKGRPAPCYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYNLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>ref|NP_918881.1| P0025H06.19 [Oryza sativa (japonica cultivar-group)]
Length = 1046
Score = 38.9 bits (89), Expect = 0.15
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F N+ L PNA
Sbjct: 39 EIVTL----GEGRPAPRYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYNLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKISIAKP 264
F LCE + P LF +F+ + P
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQPVSP 128
>ref|NP_918693.1| P0560B06.7 [Oryza sativa (japonica cultivar-group)]
gi|15528678|dbj|BAB64744.1| P0560B06.7 [Oryza sativa
(japonica cultivar-group)]
Length = 917
Score = 38.9 bits (89), Expect = 0.15
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELF----MKLPFSTFVCDVLTFLNVAPCQLLPNAW 231
EVV L +G PA Y +F F + LPFS+F DVL F ++ L PNA
Sbjct: 39 EVVVL----GEGRPAPHYPGRSVFFLPFAMAGLVLPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKISIAKP 264
F LCE + P LF +F+ + P
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQPVSP 128
>ref|NP_910208.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1065
Score = 38.9 bits (89), Expect = 0.15
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGRPAPCYPGRSVFFLTFAMAGLVPPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>dbj|BAD88339.1| membrane-associated protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 853
Score = 38.9 bits (89), Expect = 0.15
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELF----MKLPFSTFVCDVLTFLNVAPCQLLPNAW 231
EVV L +G PA Y +F F + LPFS+F DVL F ++ L PNA
Sbjct: 39 EVVVL----GEGRPAPHYPGRSVFFLPFAMAGLVLPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKISIAKP 264
F LCE + P LF +F+ + P
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQPVSP 128
>ref|NP_916124.1| P0046E05.7 [Oryza sativa (japonica cultivar-group)]
Length = 1054
Score = 38.5 bits (88), Expect = 0.19
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGRPAPDYPERSVFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>emb|CAE75911.1| OSJNBb0115I21.14 [Oryza sativa (japonica cultivar-group)]
gi|38346466|emb|CAD39571.2| OSJNBa0019G23.14 [Oryza
sativa (japonica cultivar-group)]
gi|50930123|ref|XP_474589.1| OSJNBa0019G23.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1041
Score = 38.5 bits (88), Expect = 0.19
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGRPAPHYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>gb|AAT85260.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 867
Score = 38.5 bits (88), Expect = 0.19
Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGHPAPCYPGRSVFFLPFAMAGLVPPFSSFFMDVLKFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ I S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTIQSVSPPS 130
>dbj|BAD54688.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 911
Score = 38.5 bits (88), Expect = 0.19
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F + PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGRPAPDYPGRSVFFLPFAMVGLVPPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>gb|AAX96746.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1054
Score = 38.5 bits (88), Expect = 0.19
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 176 EVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQLLPNAW 231
E+VTL +G PA Y +F F PFS+F DVL F ++ L PNA
Sbjct: 39 EIVTL----GEGRPAPHYPGRSVFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHLTPNAV 94
Query: 232 GFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
F LCE + P LF +F+ + S++ PS
Sbjct: 95 MTLAIFAHLCEMFIGVRPSLRLFRWFFTVQSVSPPS 130
>gb|AAX95001.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1016
Score = 38.5 bits (88), Expect = 0.19
Identities = 24/61 (39%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Query: 207 PFSTFVCDVLTFLNVAPCQLLPNAWGFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKP 264
PFS+F+ DVL F ++ L PNA F LCE + P LF +FY + S++ P
Sbjct: 70 PFSSFLMDVLEFYDLQMAHLTPNAVMTLAIFAHLCEMFIGVRPSLRLFRWFYTVQSVSPP 129
Query: 265 S 265
S
Sbjct: 130 S 130
>ref|XP_479434.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|50510241|dbj|BAD31439.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|22296328|dbj|BAC10099.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1035
Score = 38.1 bits (87), Expect = 0.25
Identities = 34/101 (33%), Positives = 45/101 (43%), Gaps = 10/101 (9%)
Query: 171 PCDDNEVVTLKPSGADGEPAWFYLHGYIFNELFMKL----PFSTFVCDVLTFLNVAPCQL 226
P E+V L +G PA Y IF F PFS+F DVL F ++ L
Sbjct: 34 PATGREIVML----GEGRPAPDYPGRSIFFLPFAMAGLVPPFSSFFMDVLEFYDLQMAHL 89
Query: 227 LPNAWGFTRCFELLCEP-LNFGPPYPLFLFFYKI-SIAKPS 265
PNA F LCE + P LF +F+ + S++ PS
Sbjct: 90 TPNAVMTLAIFAHLCEMFIGVRPSLQLFRWFFTVQSVSPPS 130
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,419,005
Number of Sequences: 2540612
Number of extensions: 20288062
Number of successful extensions: 61076
Number of sequences better than 10.0: 249
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 231
Number of HSP's that attempted gapping in prelim test: 60436
Number of HSP's gapped (non-prelim): 624
length of query: 265
length of database: 863,360,394
effective HSP length: 126
effective length of query: 139
effective length of database: 543,243,282
effective search space: 75510816198
effective search space used: 75510816198
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0128.2