BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118c.6
(278 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 96 1e-18
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 93 9e-18
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 92 2e-17
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 90 6e-17
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 87 4e-16
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 85 2e-15
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal... 85 2e-15
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 79 1e-13
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 76 9e-13
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 75 2e-12
dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis ... 74 3e-12
dbj|BAB11303.1| non-LTR retrolelement reverse transcriptase-like... 73 1e-11
gb|AAC18922.1| putative reverse transcriptase [Arabidopsis thali... 71 4e-11
ref|NP_914902.1| OSJNBa0052O12.20 [Oryza sativa (japonica cultiv... 69 2e-10
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 67 6e-10
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 66 9e-10
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 66 1e-09
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 65 2e-09
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 64 5e-09
ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana] 64 5e-09
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 95.5 bits (236), Expect = 1e-18
Identities = 67/207 (32%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTN-FGVGDHGSWIRSQARSRNSV---R 56
C C+ EE ILH LRDCP + IW RL L + F W+ + +
Sbjct: 944 CSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKGIWPTL 1003
Query: 57 FLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFIT--------FSNGVAGDHGSW 108
F G+W WKWR VF + R+IC + +FI G G+ +
Sbjct: 1004 FGMGIWWAWKWRCCDVFGE---------RKICRDRLKFIKDMAEEVRRVHVGAVGNRPNG 1054
Query: 109 LSS----RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALI 164
+ RWQ P G VK+ D + AGG IR+ QG WLGGF + A +
Sbjct: 1055 VRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPL 1114
Query: 165 AEATALLLGLELVWDLGYRQVMVEVDC 191
AE GL + WD G+R+V +++DC
Sbjct: 1115 AELWGAYYGLLIAWDKGFRRVELDLDC 1141
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 92.8 bits (229), Expect = 9e-18
Identities = 61/211 (28%), Positives = 89/211 (41%), Gaps = 30/211 (14%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL------------GALAWTNFGVGDHGSWIRSQ 48
C C E+ I+H LRDCP + IW+RL L W +GD R
Sbjct: 22 CQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLLEWLFANLGDR----RKT 77
Query: 49 ARSRNSVRFLAGVWGVWKWRNNMVFEDSPWLVDEACRR-------ICHEHDEFITFSNGV 101
S S F +W WKWR +F V + CR + E +
Sbjct: 78 CESTWSTLFALSIWWAWKWRCGNIFG-----VQDKCRDRVRFLKDLARETSMAHVIVRTL 132
Query: 102 AGDHGSWLSS--RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSG 159
+G HG + W P++G KLN D + AGG++RD++G W GGF +
Sbjct: 133 SGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGV 192
Query: 160 GNALIAEATALLLGLELVWDLGYRQVMVEVD 190
+A +AE + GL + W+ ++ +EVD
Sbjct: 193 CSAPLAELWGVYYGLYIAWERRVTRLEIEVD 223
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 91.7 bits (226), Expect = 2e-17
Identities = 70/219 (31%), Positives = 92/219 (41%), Gaps = 14/219 (6%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTN-FGVGDHGSWIRSQARSRNS--VRF 57
C C EE ILH LRDCP IW RL F WI R R S F
Sbjct: 35 CQICQGGEETILHVLRDCPAMAGIWSRLVPRDQIRQFFTASLLEWIYKNLRERGSWPTVF 94
Query: 58 LAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSS-----R 112
+ VW WKWR +F + D + + E + +N + +S
Sbjct: 95 VMAVWWGWKWRCGNIFGGNGKCRDRV--KFIKDLAEEVAIANAFVKGNEVRVSRVERLVS 152
Query: 113 WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIAEATALLL 172
W P+ G VKLN D + AGG++RD G W+GGF + +A +AE +
Sbjct: 153 WVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYY 212
Query: 173 GLELVWDLGYRQVMVEVD----CGELLQVMADEESCRFL 207
GL + W G R+V +EVD G L +AD FL
Sbjct: 213 GLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFL 251
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 90.1 bits (222), Expect = 6e-17
Identities = 65/207 (31%), Positives = 91/207 (43%), Gaps = 23/207 (11%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL---GALAWTNFGVGDHGSWIRSQARSRNSVR- 56
C C +E ILH LRDCP IW RL G + T F + W+ +R
Sbjct: 329 CQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKI--TAFFASNILDWVYQNLSDVTEIRG 386
Query: 57 ------FLAGVWGVWKWRNNMVFEDSP-------WLVDEACRRICHEHDEFITFSNGVAG 103
F VW WKWR VF ++ ++VD+A R I H + G
Sbjct: 387 CPWATLFAIVVWWAWKWRCGNVFGENGRCRDRVRFVVDQA-REIWIAH---LNLRRGAMR 442
Query: 104 DHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNAL 163
+S +W PP G KLN D + AGG++RD +G W GF + +A
Sbjct: 443 GSEVEMSIKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAP 502
Query: 164 IAEATALLLGLELVWDLGYRQVMVEVD 190
+AE + GL + W+ G R++ +EVD
Sbjct: 503 LAELWGVYYGLHIAWERGIRRLELEVD 529
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 87.4 bits (215), Expect = 4e-16
Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 33/212 (15%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL-GALAWTNFGVGDHGSWIRSQARSRNSVR--- 56
CP C E ++H LRDCP IW+R+ + F W+ + R+
Sbjct: 385 CPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGNLKERSDSERRS 444
Query: 57 ----FLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR 112
F VW WKWR VF + D CR D + VA + L++
Sbjct: 445 WPTLFALTVWWGWKWRCGYVFGE-----DSRCR------DRVKFLKSAVAEVEAAHLAAN 493
Query: 113 --------------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRS 158
W+ P +G V +N D + AGG+IRD+ G WL GF +
Sbjct: 494 GDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIG 553
Query: 159 GGNALIAEATALLLGLELVWDLGYRQVMVEVD 190
+A +AE + GL + W+ G+R+V +EVD
Sbjct: 554 VCSAPLAELWGVYYGLVVAWERGWRRVRLEVD 585
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 85.1 bits (209), Expect = 2e-15
Identities = 62/205 (30%), Positives = 87/205 (42%), Gaps = 25/205 (12%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQ---ARSRNSVRF 57
C C+ +E ILH LRDCP IW RL N W+ + A+ F
Sbjct: 685 CSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQF-EWLFTNLDPAKGDWPTLF 743
Query: 58 LAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFIT-FSNGVAGDHGSWLSS----- 111
G+W WKWR VF + R++C + +FI + V H L++
Sbjct: 744 SMGIWWAWKWRCGDVFGE---------RKLCRDRLKFIKDIAEEVRKAHVGTLNNHVKRA 794
Query: 112 ------RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIA 165
RW+ P VKL D + A G I + QG WLGGF + +A +A
Sbjct: 795 RVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLA 854
Query: 166 EATALLLGLELVWDLGYRQVMVEVD 190
E GL + WD G+R+V + +D
Sbjct: 855 ELWGAYYGLLIAWDKGFRRVELNLD 879
>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 411
Score = 85.1 bits (209), Expect = 2e-15
Identities = 65/219 (29%), Positives = 88/219 (39%), Gaps = 47/219 (21%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL------------GALAWTNFGVGDHG-----S 43
C C E +H LRDCP + IWLR+ W +GD
Sbjct: 121 CEVCKGGVESAMHILRDCPTMEGIWLRIVPPRKRHEFFKKSLFEWVYGNLGDDAVVDGVP 180
Query: 44 WIRSQARSRNSVRFLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFI-TFSNGVA 102
W SV F GVW WKWR VF ++ R C + +F+ + V
Sbjct: 181 W---------SVMFAMGVWWGWKWRCGNVFGEN---------RKCRDRVQFVKNVAKEVF 222
Query: 103 GDHGSWLSSR-----------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLG 151
HGS + W P G VKLN D + AGG++RD++G W G
Sbjct: 223 QAHGSRAGNDRGRNRVERLIGWGSPGVGWVKLNTDGASRGNPGLATAGGVLRDEEGNWRG 282
Query: 152 GFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVD 190
GF A+ +A +AE + GL W + Q+ +EVD
Sbjct: 283 GFAANIGRCSAPLAELWEVYYGLYFAWAIRIPQLELEVD 321
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 79.3 bits (194), Expect = 1e-13
Identities = 67/225 (29%), Positives = 92/225 (40%), Gaps = 21/225 (9%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWT-NFGVGDHGSWIRSQARSRNS----- 54
C C +E ILH L+DCP IW RL + + +F G W+ +N+
Sbjct: 718 CQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMKNAETGYA 777
Query: 55 --VRFLAGVWGVWKWRNNMVF------EDSPWLVDEACRRICHEHDEFITFSNGVAGDHG 106
F VW WKWR VF D + + H H I NG
Sbjct: 778 WATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHA--IHSQNGGLRTRV 835
Query: 107 SWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIAE 166
L + W+PP VKLN D + GG++RD G W GGF +A +AE
Sbjct: 836 ERLVA-WKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAE 894
Query: 167 ATALLLGLELVWDLGYRQVMVEVD----CGELLQVMADEESCRFL 207
+ GL + W+ + +V +EVD G L ++D S FL
Sbjct: 895 LWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFL 939
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 76.3 bits (186), Expect = 9e-13
Identities = 58/210 (27%), Positives = 83/210 (38%), Gaps = 29/210 (13%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL-GALAWTNFGVGDHGSWIRSQARSRNS----- 54
C C +E I+H LRDCP IWLRL A F W+ +
Sbjct: 105 CQVCRGAKETIIHVLRDCPAMSGIWLRLVPARERERFFTRSLLEWLYENLHQKEDPSRGG 164
Query: 55 --VRFLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAG------DHG 106
F +W WKWR VF + R C + F+ G + G
Sbjct: 165 WPTLFAMSIWWGWKWRCMNVFGEL---------RPCRDRVRFVRDMAAEVGAAYLKVNAG 215
Query: 107 SWLSSR------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGG 160
L R W+ P + +N D + A G++RD +G WLGGF +
Sbjct: 216 RNLGERVERQIVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVC 275
Query: 161 NALIAEATALLLGLELVWDLGYRQVMVEVD 190
+A +AE + GL W+ G R+V++EV+
Sbjct: 276 SAPLAELWGVYYGLVTAWERGVRRVVLEVE 305
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 75.5 bits (184), Expect = 2e-12
Identities = 55/201 (27%), Positives = 80/201 (39%), Gaps = 33/201 (16%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLR-LGALAWTNFGVGDHGSWIRSQARSRNS----- 54
CP C E ++H LRDCP IW+R + + F W+ + R+
Sbjct: 372 CPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGNLKERSDSERRS 431
Query: 55 --VRFLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR 112
F VW WKWR VF + D CR D + VA + L++
Sbjct: 432 WPTLFALTVWWGWKWRCGYVFGE-----DSRCR------DRVKFLKSAVAEVEAAHLAAN 480
Query: 113 --------------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRS 158
W+ P +G V +N D + AGG+IRD+ G WL GF +
Sbjct: 481 GDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIG 540
Query: 159 GGNALIAEATALLLGLELVWD 179
+A +AE + GL + W+
Sbjct: 541 VCSAPLAELWGVYYGLVVAWE 561
>dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis thaliana]
gi|15230827|ref|NP_189164.1| hypothetical protein
[Arabidopsis thaliana]
Length = 343
Score = 74.3 bits (181), Expect = 3e-12
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGA----LAWTNFGVGDHGSWIRSQARSRNSVR 56
C RC +E H DC ++Q++W G L T + + S + +
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ 115
Query: 57 F----LAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR 112
+ +W +WK RN +VF+ +R ++ E+ + V + SSR
Sbjct: 116 LFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSR 175
Query: 113 ----------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRS-GGN 161
WQ P +K N D +F Q R AG L+RD+ G+++G A S +
Sbjct: 176 HQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSD 235
Query: 162 ALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEE 202
+L +E AL++ ++ W GYR+V+ E D ++ ++M +E+
Sbjct: 236 SLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK 276
>dbj|BAB11303.1| non-LTR retrolelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 228
Score = 72.8 bits (177), Expect = 1e-11
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Query: 61 VWGVWKWRNNMVFE--DSPWLVDEACRRICHEHDEFITFSNGVAGD-------HGSW--L 109
+W +WK RN +VF+ + W D R +E +E+IT NG+ +G+
Sbjct: 10 LWRIWKSRNKLVFQRKQNDWWRD--IRDATNEAEEWIT--NGLCAQVPTPSTTNGTTRQF 65
Query: 110 SSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYA-HRSGGNALIAEAT 168
S+WQ P G +K N D SF + R A +IRDD G++ G A + +A AE
Sbjct: 66 QSQWQKPHMGWIKCNYDGSFVNRVRGSTAAWIIRDDNGVFKGAAQATGATVSSAFEAECQ 125
Query: 169 ALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
+L+L ++ +W G+R+V++E DC L+ V+
Sbjct: 126 SLILTMQQLWIRGFRKVILEGDCKLLVNVL 155
>gb|AAC18922.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7487819|pir||T00599 probable reverse transcriptase
At2g02650 [imported] - Arabidopsis thaliana
gi|15227011|ref|NP_178368.1| reverse
transcriptase-related [Arabidopsis thaliana]
Length = 365
Score = 70.9 bits (172), Expect = 4e-11
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFG----VGDHGSWI--RSQARSRNS 54
C RC EE I H + +CP++Q +W + +G D+ + + S+ ++ NS
Sbjct: 75 CQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNS 134
Query: 55 V-RFLAG--VWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDH------ 105
+ RFL +W +WK RN +F+ D R+ + E++ + +
Sbjct: 135 LDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATN 194
Query: 106 ----GSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG-IWLGGFYAHRSGG 160
SS+W PP +G VK N D + + +G IR+ G I L G +S
Sbjct: 195 PIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSST 254
Query: 161 NALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEE 202
+L AEA L L+++W G R V E D L+ ++ + E
Sbjct: 255 CSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNGE 296
>ref|NP_914902.1| OSJNBa0052O12.20 [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 68.6 bits (166), Expect = 2e-10
Identities = 61/232 (26%), Positives = 98/232 (41%), Gaps = 33/232 (14%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLG---ALAWTNFGVGDHGSWI-----RSQARSR 52
C C EED+ H L CPH++ +W +G A++ WI R R
Sbjct: 15 CTICGTEEEDVAHALCRCPHAKYLWEAMGNTNAISCKPDSNWKDSDWILDISGRVSKEER 74
Query: 53 NSVRFLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITF-----SNGVAGDH-- 105
+ L +W +W RN + + V+ + R I + +N + G H
Sbjct: 75 MGLMML--LWRIWYVRNGITHGKAAIPVEVSQRFIISYMASLLEIRQHPNANLIKGKHVV 132
Query: 106 --GSWL-----------SSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG--IWL 150
GS + SS W P++G +KLN+D S++ D G G ++RD G I+
Sbjct: 133 QYGSSMPLPRQCKPSAESSSWIRPQEGWMKLNVDGSYYPSDGKGGTGAVLRDSSGNLIFA 192
Query: 151 GGFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEE 202
HR +AL AE G+ + ++VE DC E++Q++ +E
Sbjct: 193 ACGVLHRP-ASALEAEMVDCREGISMALQWTLLPIIVETDCLEMVQLIHSDE 243
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 67.0 bits (162), Expect = 6e-10
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 19/226 (8%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDH---GSWIRSQARSRNSVRF 57
C RC +E I H + C ++Q +W D+ + Q + ++
Sbjct: 1426 CQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPI 1485
Query: 58 LAGV------WGVWKWRNNMVFEDS---PWLVDEACRRICHE------HDEFITFSNGVA 102
L G+ W +WK RN +F+ PW V + + E +D I+ + +
Sbjct: 1486 LNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQS 1545
Query: 103 GDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG-IWLGGFYAHRSGGN 161
D S +W P +G +K N D + + G ++RD G + G + +
Sbjct: 1546 NDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYS 1605
Query: 162 ALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEESCRFL 207
AL AEA L L++VW GY V E D EL ++ E L
Sbjct: 1606 ALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLL 1651
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 66.2 bits (160), Expect = 9e-10
Identities = 57/213 (26%), Positives = 77/213 (35%), Gaps = 35/213 (16%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL------------GALAWTNFGVGDHGS----- 43
C C E +LH LRDCP IW+R+ W +GD
Sbjct: 438 CQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCEDIP 497
Query: 44 WIRSQARSRNSVRFLAGVWGVWKWRNNMVF------EDSPWLVDEACRRICHEHDEFITF 97
W S F +W WKWR +F D V E + H +
Sbjct: 498 W---------STIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHSGNVLV 548
Query: 98 SNGVAGDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHR 157
G+ + W P G VK+N D + AGG++RD G W GGF +
Sbjct: 549 --GITQPRVERMIG-WVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNI 605
Query: 158 SGGNALIAEATALLLGLELVWDLGYRQVMVEVD 190
+A AE + GL W+ +V +EVD
Sbjct: 606 GRCSAPQAELWGVYYGLYFAWEKKVPRVELEVD 638
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 65.9 bits (159), Expect = 1e-09
Identities = 65/232 (28%), Positives = 90/232 (38%), Gaps = 53/232 (22%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSR-------N 53
CPRC E I H L CP + W W + S IR+Q S N
Sbjct: 1240 CPRCHRENESINHALFTCPFATMAW-------WLS-----DSSLIRNQLMSNDFEENISN 1287
Query: 54 SVRFLAG--------------VWGVWKWRNNMVFE---DSPWLVDEACRRICHE------ 90
+ F+ +W +WK RNN+VF +SP + + H+
Sbjct: 1288 ILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1347
Query: 91 -HDEFITFSNGVAGDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGI- 148
H + + + +A + W+ P VK N D F Q G +IR+ G
Sbjct: 1348 SHKKTPSPTRQIAEN-----KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTP 1402
Query: 149 --WLGGFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
W AH S N L AE ALL L+ W GY QV +E DC L+ ++
Sbjct: 1403 ISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 1452
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 65.1 bits (157), Expect = 2e-09
Identities = 66/232 (28%), Positives = 90/232 (38%), Gaps = 53/232 (22%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSR-------N 53
CPRC E I H L CP + W RL S IR+Q S N
Sbjct: 1466 CPRCHRENESINHALFTCPFATMAW-RLS-----------DSSLIRNQLMSNDFEENISN 1513
Query: 54 SVRFLAG--------------VWGVWKWRNNMVFE---DSPWLVDEACRRICHE------ 90
+ F+ +W +WK RNN+VF +SP + + H+
Sbjct: 1514 ILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1573
Query: 91 -HDEFITFSNGVAGDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGI- 148
H + + + +A + W+ P VK N D F Q G +IR+ G
Sbjct: 1574 SHKKTPSPTRQIAEN-----KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTP 1628
Query: 149 --WLGGFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
W AH S N L AE ALL L+ W GY QV +E DC L+ ++
Sbjct: 1629 ISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 1678
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 63.9 bits (154), Expect = 5e-09
Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 21/198 (10%)
Query: 9 EDILHCLRDCPHSQEIWLR-LGALAWTNFGVGDHGSWIRSQARSRNSVR-------FLAG 60
E +LH RDCP IW+R + F W+ R+S F
Sbjct: 25 ESVLHVFRDCPAQLGIWVRFVPRRRQQGFFSKSLFEWLYDNLCDRSSCEDIPWSTIFAVI 84
Query: 61 VWGVWKWRNNMVF------EDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR-- 112
+W WKWR + +F D V E + H N + G +
Sbjct: 85 IWWGWKWRCSNIFGENTKCRDRVKFVKEWVVEVYRAH-----LGNALVGSTQPRVERLIG 139
Query: 113 WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIAEATALLL 172
W P G VK+N D + AGG++RD +G W GGF + +A AE +
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 173 GLELVWDLGYRQVMVEVD 190
GL W+ +V +EVD
Sbjct: 200 GLYFAWEKKVPRVELEVD 217
>ref|NP_680382.1| hypothetical protein [Arabidopsis thaliana]
Length = 258
Score = 63.9 bits (154), Expect = 5e-09
Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 21/198 (10%)
Query: 9 EDILHCLRDCPHSQEIWLR-LGALAWTNFGVGDHGSWIRSQARSRNSVR-------FLAG 60
E +LH RDCP IW+R + F W+ R+S F
Sbjct: 25 ESVLHVFRDCPAQLGIWVRFVPRRRQQGFFSKSLFEWLYDNLCDRSSCEDIPWSTIFAVI 84
Query: 61 VWGVWKWRNNMVF------EDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR-- 112
+W WKWR + +F D V E + H N + G +
Sbjct: 85 IWWGWKWRCSNIFGENTKCRDRVKFVKEWVVEVYRAH-----LGNALVGSTQPRVERLIG 139
Query: 113 WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIAEATALLL 172
W P G VK+N D + AGG++RD +G W GGF + +A AE +
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 173 GLELVWDLGYRQVMVEVD 190
GL W+ +V +EVD
Sbjct: 200 GLYFAWEKKVPRVELEVD 217
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.333 0.143 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,717,898
Number of Sequences: 2540612
Number of extensions: 20137485
Number of successful extensions: 42377
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 42131
Number of HSP's gapped (non-prelim): 177
length of query: 278
length of database: 863,360,394
effective HSP length: 126
effective length of query: 152
effective length of database: 543,243,282
effective search space: 82572978864
effective search space used: 82572978864
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 74 (33.1 bits)
Lotus: description of TM0118c.6