BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118a.5
(351 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 87 6e-16
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 86 2e-15
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 86 2e-15
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal... 82 2e-14
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 80 7e-14
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 75 2e-12
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 75 2e-12
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 75 2e-12
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 70 9e-11
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 68 4e-10
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 66 1e-09
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 65 4e-09
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 64 9e-09
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 62 2e-08
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 62 2e-08
gb|AAP52527.1| putative reverse transcriptase. [Oryza sativa (ja... 62 2e-08
emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|49720... 62 2e-08
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 60 7e-08
dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis ... 60 1e-07
gb|AAF79665.1| F9C16.13 [Arabidopsis thaliana] gi|25405860|pir||... 59 2e-07
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 87.4 bits (215), Expect = 6e-16
Identities = 64/215 (29%), Positives = 98/215 (44%), Gaps = 26/215 (12%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN-GRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
W + G +T R AY L + N G + +WKL PE++ +F+WL+ + TN
Sbjct: 872 WKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNV 931
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLR-LGATTWRSFATMDVEAWI-T 118
R R HL+++ S C+ AEETILH LRDCP +W R L F + + W+ T
Sbjct: 932 ERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFT 991
Query: 119 SL--ARSNHAISFLSGIWSVWLWR-------NNMCFEETPW--NLAEAWRRLSHVHDEML 167
++ + F GIW W WR +C + + ++AE RR+ HV
Sbjct: 992 NMDPVKGIWPTLFGMGIWWAWKWRCCDVFGERKICRDRLKFIKDMAEEVRRV-HV----- 1045
Query: 168 QTSQDWSPGDLNSLLCVRWHPPARGGSN*MWMTVT 202
+ P + +RW P+ G W+ +T
Sbjct: 1046 -GAVGNRPNGVRVERMIRWQVPSDG-----WVKIT 1074
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 2 WGPSPTGCYTAREAYGWLN-NLDHEGQNGRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
W + G +T R AY L + G + +WKL PE++ +F+WL+ + + TN
Sbjct: 613 WKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVIMTNV 672
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRLGATTWRSFATMDVEAWITSL 120
R R HL+ + S C+ A+E+ILH LRDCP +W RL ++ E T+L
Sbjct: 673 ERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQFEWLFTNL 732
Query: 121 --ARSNHAISFLSGIWSVWLWRNNMCFEE 147
A+ + F GIW W WR F E
Sbjct: 733 DPAKGDWPTLFSMGIWWAWKWRCGDVFGE 761
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 85.5 bits (210), Expect = 2e-15
Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 25/209 (11%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQNGR-CWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
WG + G +T + AY +L + + QN R + VW++ E++ +F+WL++++ + T+
Sbjct: 257 WGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERVRVFIWLVVHQVIMTDV 316
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRL---GATTWRSFATMDVEAW- 116
R R HL+ S C +ETILH LRDCP +W RL G T +F ++ W
Sbjct: 317 ERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKIT--AFFASNILDWV 374
Query: 117 ------ITSLARSNHAISFLSGIWSVWLWR-------NNMCFEETPWNLAEAWRRLSHVH 163
+T + A F +W W WR N C + + + +A R + H
Sbjct: 375 YQNLSDVTEIRGCPWATLFAIVVWWAWKWRCGNVFGENGRCRDRVRFVVDQA-REIWIAH 433
Query: 164 DEMLQTSQDWSPGDLNSLLCVRWHPPARG 192
+ + + S +++ ++W PP+ G
Sbjct: 434 LNLRRGAMRGSEVEMS----IKWTPPSTG 458
>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 411
Score = 82.4 bits (202), Expect = 2e-14
Identities = 48/155 (30%), Positives = 71/155 (44%), Gaps = 9/155 (5%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN-GRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
W G ++ + AYG L D + G + VW++KVPE++ +F WL+ N+A+ TN
Sbjct: 49 WSGEADGRFSVKSAYGLLTRDDTPRPDMGALFGRVWRIKVPERVRVFFWLLGNQAIMTNE 108
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRLGATTWR-SFATMDVEAWITS 119
R R HL S C E+ +H LRDCP +WLR+ R F + W+
Sbjct: 109 ERHRRHLCASDLCEVCKGGVESAMHILRDCPTMEGIWLRIVPPRKRHEFFKKSLFEWVYG 168
Query: 120 LARSN-------HAISFLSGIWSVWLWRNNMCFEE 147
+ ++ F G+W W WR F E
Sbjct: 169 NLGDDAVVDGVPWSVMFAMGVWWGWKWRCGNVFGE 203
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 80.5 bits (197), Expect = 7e-14
Identities = 49/155 (31%), Positives = 72/155 (45%), Gaps = 9/155 (5%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN-GRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
W + G +T AY L + Q+ R + +W++ PE++ +F+WL+ N+A+ TN
Sbjct: 33 WSGTENGEFTVGSAYSLLMEEGSQTQDMERFFSRIWRVLAPERVRVFLWLVGNQAILTNV 92
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRLGATTWRS-FATMDVEAWI-- 117
R R H+ + C A+ETI+H LRDCP +WLRL R F T + W+
Sbjct: 93 ERARRHMGDTDVCQVCRGAKETIIHVLRDCPAMSGIWLRLVPARERERFFTRSLLEWLYE 152
Query: 118 -----TSLARSNHAISFLSGIWSVWLWRNNMCFEE 147
+R F IW W WR F E
Sbjct: 153 NLHQKEDPSRGGWPTLFAMSIWWGWKWRCMNVFGE 187
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 75.5 bits (184), Expect = 2e-12
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN-GRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
WG S G + Y +L + Q+ R + VW + PE++ LF+WL+ +A+ TN
Sbjct: 534 WGESQDGRFKVSTTYSFLTRDEAPRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQ 593
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRL 100
R R HL+ + C A+E+I+H LRDCP +WLRL
Sbjct: 594 ERHRRHLSTTTICQVCKGAKESIIHVLRDCPAMEGIWLRL 633
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 75.5 bits (184), Expect = 2e-12
Identities = 45/156 (28%), Positives = 72/156 (45%), Gaps = 11/156 (7%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN--GRCWQWVWKLKVPEKM*LFVWLILNKALQTN 59
W + G +T AY + ++D + R + VW++ VPE+ +F+WL+ N+ + TN
Sbjct: 313 WVGTENGRFTVSSAY-LIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGNQVVLTN 371
Query: 60 GNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLR-LGATTWRSFATMDVEAWI- 117
R R H+A S C A E+++H LRDCP +W+R + R F + W+
Sbjct: 372 AERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMY 431
Query: 118 ------TSLARSNHAISFLSGIWSVWLWRNNMCFEE 147
+ R + F +W W WR F E
Sbjct: 432 GNLKERSDSERRSWPTLFALTVWWGWKWRCGYVFGE 467
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 75.5 bits (184), Expect = 2e-12
Identities = 45/156 (28%), Positives = 72/156 (45%), Gaps = 11/156 (7%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN--GRCWQWVWKLKVPEKM*LFVWLILNKALQTN 59
W + G +T AY + ++D + R + VW++ VPE+ +F+WL+ N+ + TN
Sbjct: 300 WVGTENGRFTVSSAY-LIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGNQVVLTN 358
Query: 60 GNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLR-LGATTWRSFATMDVEAWI- 117
R R H+A S C A E+++H LRDCP +W+R + R F + W+
Sbjct: 359 AERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMY 418
Query: 118 ------TSLARSNHAISFLSGIWSVWLWRNNMCFEE 147
+ R + F +W W WR F E
Sbjct: 419 GNLKERSDSERRSWPTLFALTVWWGWKWRCGYVFGE 454
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 70.1 bits (170), Expect = 9e-11
Identities = 37/103 (35%), Positives = 53/103 (50%), Gaps = 3/103 (2%)
Query: 41 PEKM*LFVWLILNKALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRL 100
PE++ +F+WL++ + + TN R+R HL+ + C EETILH LRDCP +W RL
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 101 -GATTWRSFATMDVEAWI--TSLARSNHAISFLSGIWSVWLWR 140
R F T + WI R + F+ +W W WR
Sbjct: 63 VPRDQIRQFFTASLLEWIYKNLRERGSWPTVFVMAVWWGWKWR 105
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 68.2 bits (165), Expect = 4e-10
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQN-GRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
W S G ++ R AY L + N + +WK++VPE++ F+WL+ N+A+ T
Sbjct: 366 WKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEE 425
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLR-LGATTWRSFATMDVEAWITS 119
R R HL+ S C E++LH LRDCP +W+R + + F + + W+
Sbjct: 426 ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYD 485
Query: 120 LARSNHAIS-------FLSGIWSVWLWRNNMCFEE 147
F IW W WR F E
Sbjct: 486 NLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGE 520
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 66.2 bits (160), Expect = 1e-09
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 49/225 (21%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQNGR---------CWQWVWKLKVPEKM*LFVWLIL 52
W S +G Y+ + Y + + ++ N + +Q +WKL VP K+ F+W +
Sbjct: 1012 WEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCV 1071
Query: 53 NKALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRLGATTWRSFATMD 112
N L N HLA+ S RC + ET+ H L CP +R W
Sbjct: 1072 NNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTW------AISPLPAPP 1125
Query: 113 VEAWITSLARSNHAISFLSG---------------IWSVWLWRNNMCFEETPWNL----- 152
W SL R+ H + + +W +W RN++ F+ +
Sbjct: 1126 GGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVIL 1185
Query: 153 -----AEAWRRLSHVHDEMLQTSQDWSPGDLNSLLCVRWHPPARG 192
+AW ++ +++D CV+W PP+ G
Sbjct: 1186 KATEDMDAWNNRKEPQPQVTSSTRD---------RCVKWQPPSHG 1221
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 64.7 bits (156), Expect = 4e-09
Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 29/203 (14%)
Query: 2 WGPSPTGCYTAREAYGWLNNL-----DHEGQNGRC---WQWVWKLKVPEKM*LFVWLILN 53
W P G ++ R AYG NL + RC W +W+ P+K+ +F W
Sbjct: 514 WHPDKHGKFSVRSAYGLACNLVNMETSSSSSSARCKRMWNLIWQTNAPQKVRIFAWRAAT 573
Query: 54 KALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELW---LRLGATTWRSFAT 110
L T N+ + L QS C +E H L CP +R LW G +
Sbjct: 574 NCLATMENKAKRKLEQSDICLVCGLEKEDTKHVLCRCPDARNLWGAMCEAGNISLNGGNL 633
Query: 111 MDVEAWI---TSLARSNHAISFLSGIWSVWLWRNNMCFEETPWNLAEAWRRLSHVHDEML 167
+ WI + FL +W +W RN + + P +
Sbjct: 634 CNDPGWIFDQLEILLDYERTVFLLILWRIWFVRNEIVHGKQP---------------PPI 678
Query: 168 QTSQDWSPGDLNSLLCVRWHPPA 190
+ S+ + + SLL +R HP A
Sbjct: 679 EASKRFLESYVKSLLEIRQHPQA 701
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 63.5 bits (153), Expect = 9e-09
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 14/184 (7%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQNG--------RCWQWVWKLKVPEKM*LFVWLILN 53
W P G ++ R AY N E + + W+ +WK VP K+ +F W +
Sbjct: 1372 WHPDKLGNFSVRTAYRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATS 1431
Query: 54 KALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRLGATTWRSFATMD- 112
L T N+ + +L S + C +E +H L CP ++ LWL + + S D
Sbjct: 1432 NCLPTWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDH 1491
Query: 113 --VEAWI---TSLARSNHAISFLSGIWSVWLWRNNMCFEETPWNLAEAWRRLSHVHDEML 167
+W+ +L + FL +W +W N + + ++ + R L +L
Sbjct: 1492 LLGPSWLFNRLALLPDHEQPMFLMVLWRIWFVHNEIIHGKPSPSIEASQRFLQSYMKSLL 1551
Query: 168 QTSQ 171
+ Q
Sbjct: 1552 EIKQ 1555
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 2 WGPSPTGCYTAREAY---GWLNNLDHEGQNG-----RCWQWVWKLKVPEKM*LFVWLILN 53
W P G ++ R AY L N++ +G + W+ +WK KVP+K+ +F W + +
Sbjct: 1737 WHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVAS 1796
Query: 54 KALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWL---RLGATTWRSFAT 110
L T N+ + L QS C E H L C + +LW + G+ + A+
Sbjct: 1797 NCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKAS 1856
Query: 111 MDVEAWITSLAR---SNHAISFLSGIWSVWLWRNNM 143
+ W+ FL +W W RN +
Sbjct: 1857 VLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNEL 1892
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 2 WGPSPTGCYTAREAY---GWLNNLDHEGQNG-----RCWQWVWKLKVPEKM*LFVWLILN 53
W P G ++ R AY L N++ +G + W+ +WK KVP+K+ +F W + +
Sbjct: 413 WHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVAS 472
Query: 54 KALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWL---RLGATTWRSFAT 110
L T N+ + L QS C E H L C + +LW + G+ + A+
Sbjct: 473 NCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKAS 532
Query: 111 MDVEAWITSLAR---SNHAISFLSGIWSVWLWRNNM 143
+ W+ FL +W W RN +
Sbjct: 533 VLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNEL 568
>gb|AAP52527.1| putative reverse transcriptase. [Oryza sativa (japonica
cultivar-group)] gi|37531876|ref|NP_920240.1| putative
reverse transcriptase. [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 2 WGPSPTGCYTAREAY---GWLNNLDHEGQNG-----RCWQWVWKLKVPEKM*LFVWLILN 53
W P G ++ R AY L N++ +G + W+ +WK KVP+K+ +F W + +
Sbjct: 115 WHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVAS 174
Query: 54 KALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWL---RLGATTWRSFAT 110
L T N+ + L QS C E H L C + +LW + G+ + A+
Sbjct: 175 NCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKAS 234
Query: 111 MDVEAWITSLAR---SNHAISFLSGIWSVWLWRNNM 143
+ W+ FL +W W RN +
Sbjct: 235 VLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNEL 270
>emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|4972055|emb|CAB43923.1|
putative protein [Arabidopsis thaliana]
gi|67633766|gb|AAY78807.1| putative reverse
transcriptase/RNA-dependent DNA polymerase [Arabidopsis
thaliana] gi|15233451|ref|NP_194638.1| reverse
transcriptase, putative / RNA-dependent DNA polymerase,
putative [Arabidopsis thaliana] gi|7485741|pir||T08964
hypothetical protein F19B15.120 - Arabidopsis thaliana
Length = 575
Score = 62.4 bits (150), Expect = 2e-08
Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 25/211 (11%)
Query: 2 WGPSPTGCYTAREAYGWLNNLDHEGQNGR---------CWQWVWKLKVPEKM*LFVWLIL 52
W + +G YT + Y L + ++ + + +Q +WK + K+ F+W L
Sbjct: 215 WDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCL 274
Query: 53 NKALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELW------LRLGATTWR 106
+ +L G HL++ + RC + +ET+ H L C +R W + LG W
Sbjct: 275 SNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGG-EWA 333
Query: 107 SFATMDVEAWITSLARSNHAISFLSG-----IWSVWLWRNNMCFEETPWNLAEAWRRLSH 161
+++ W+ +L N S +W +W RN + F +N E RR
Sbjct: 334 DSIYVNL-YWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED 392
Query: 162 VHDEMLQTSQDWSPG---DLNSLLCVRWHPP 189
+E ++ S G +N C RW PP
Sbjct: 393 DLEEWRIRTEAESCGTKPQVNRSSCGRWRPP 423
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 60.5 bits (145), Expect = 7e-08
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 52 LNKALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLRL-GATTWRSFAT 110
+ + L TN R R HL+ S C AE+TI+H LRDCP +W+RL A R F T
Sbjct: 1 MQQVLMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFT 60
Query: 111 MDVEAWI-------TSLARSNHAISFLSGIWSVWLWR 140
+ W+ S + F IW W WR
Sbjct: 61 QSLLEWLFANLGDRRKTCESTWSTLFALSIWWAWKWR 97
>dbj|BAB02086.1| reverse transcriptase-like protein [Arabidopsis thaliana]
gi|15230827|ref|NP_189164.1| hypothetical protein
[Arabidopsis thaliana]
Length = 343
Score = 59.7 bits (143), Expect = 1e-07
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 35 VWKLKVPEKM*LFVWLILNKALQTNGNRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSR 94
+WKLK K+ F+W +L+ AL T N R H+ P RC +ET H DC +++
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 95 ELWLRLG------ATTWRSFATMDVEAWITSLARSNHAISFLSGIWSVW-LW--RNNMCF 145
++W G TT + T +E ++S + F IW +W LW RN + F
Sbjct: 78 QVWRASGIPHQELRTTGITMET-KMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136
Query: 146 EE 147
++
Sbjct: 137 QQ 138
>gb|AAF79665.1| F9C16.13 [Arabidopsis thaliana] gi|25405860|pir||F96503 protein
F9C16.13 [imported] - Arabidopsis thaliana
Length = 1172
Score = 58.9 bits (141), Expect = 2e-07
Identities = 40/155 (25%), Positives = 67/155 (42%), Gaps = 9/155 (5%)
Query: 2 WGPSPTGCYTAREAYGWLN-NLDHEGQNGRCWQWVWKLKVPEKM*LFVWLILNKALQTNG 60
WG + G ++ R A+ + +L + + +W + E+ +F+ L+ N+AL T+
Sbjct: 42 WGETVDGEFSVRSAHALVTRDLSPQPNVSALFSRIWGVVATERAKMFLCLVGNQALMTDV 101
Query: 61 NRFRCHLAQSPSRSRCSAAEETILHCLRDCPHSRELWLR-LGATTWRSFATMDVEAWITS 119
RF H + C ETILH L+DCP LW + + R F + W+ S
Sbjct: 102 ERFWRHRCITEVCQMCKGGSETILHMLQDCPAMAGLWNQIIPRRRRRLFFEQSLIEWLYS 161
Query: 120 -------LARSNHAISFLSGIWSVWLWRNNMCFEE 147
S + F +W W WR + F++
Sbjct: 162 NLGDDQETYESVWSTVFTMAVWWAWKWRCDNEFDK 196
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.342 0.147 0.572
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,993,001
Number of Sequences: 2540612
Number of extensions: 24798358
Number of successful extensions: 81911
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 81686
Number of HSP's gapped (non-prelim): 174
length of query: 351
length of database: 863,360,394
effective HSP length: 129
effective length of query: 222
effective length of database: 535,621,446
effective search space: 118907961012
effective search space used: 118907961012
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0118a.5