BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118a.3
(328 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV44141.1| unknown protein [Oryza sativa (japonica cultivar-... 213 6e-54
dbj|BAB09212.1| unnamed protein product [Arabidopsis thaliana] g... 199 7e-50
ref|NP_174270.1| NLI interacting factor (NIF) family protein [Ar... 185 1e-45
ref|NP_174271.1| NLI interacting factor (NIF) family protein [Ar... 173 7e-42
pir||D86421 hypothetical protein F1N18.16 - Arabidopsis thaliana... 173 7e-42
gb|AAD28548.1| development protein DG1148 [Dictyostelium discoid... 151 3e-35
gb|AAH94289.1| CTD (carboxy-terminal domain, RNA polymerase II, ... 143 6e-33
emb|CAE11805.1| RB serine phosphatase [Homo sapiens] gi|56549683... 143 6e-33
ref|NP_598471.2| CTD (carboxy-terminal domain, RNA polymerase II... 143 6e-33
gb|AAV63944.1| nuclear LIM factor interactor-interacting protein... 142 1e-32
gb|AAV63937.1| putative nuclear LIM factor interactor-interactin... 142 1e-32
gb|EAL19249.1| hypothetical protein CNBH3480 [Cryptococcus neofo... 142 1e-32
gb|AAV63946.1| nuclear LIM factor interactor-interacting protein... 142 2e-32
emb|CAE11804.1| RB serine phosphatase [Homo sapiens] gi|31074181... 141 2e-32
gb|AAV63945.1| nuclear LIM factor interactor-interacting protein... 141 2e-32
dbj|BAA21667.1| HYA22 [Homo sapiens] 141 2e-32
ref|NP_001001316.1| nuclear LIM interactor-interacting factor 1 ... 141 3e-32
gb|AAP43959.1| NIF [Xenopus laevis] 140 4e-32
gb|AAV63938.1| putative nuclear LIM factor interactor-interactin... 140 4e-32
ref|XP_516364.1| PREDICTED: similar to RB serine phosphatase [Pa... 139 1e-31
>gb|AAV44141.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 307
Score = 213 bits (542), Expect = 6e-54
Identities = 132/280 (47%), Positives = 168/280 (59%), Gaps = 7/280 (2%)
Query: 49 SRVKRVPTKSIKDIRRNNNRRWRRKTP--IKNAVAASSAVLASIHRRITKFFSKLARL-S 105
S K P+ S R RR +P IK+ A L RR+ K F++LA L S
Sbjct: 21 SPTKPTPSPSPSPASARRRRVLRRGSPGRIKSLAATFDTSLRGCRRRLLKLFARLAVLGS 80
Query: 106 PDRKRASYKILKKTSPQDDSICRTLVFDGGDNDPSPPLPL-LPPSISHRRTVFLDLDETL 164
P ++RA+ ++ S SP LPL LPP RRT+FLDLDETL
Sbjct: 81 PTKRRAAAAGFRRLRSPPRSPSPPTPKPNQVAAVSPQLPLPLPPVSPGRRTLFLDLDETL 140
Query: 165 VHSNTAPPPES-FDFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYA 223
+HS T P + DF VRPVI G + FYV KRPGVD FL A AA FE+VVFTA L EYA
Sbjct: 141 IHSQTDPAARARHDFAVRPVIAGQAVTFYVVKRPGVDAFLAAAAAAFELVVFTAGLPEYA 200
Query: 224 SLVLDRVD-RNRLVSHRLYRDSCKQE-DGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPE 281
SLVLDR+D R L +HRLYR +C+ DG+LVKDL+ GRDL+R VIVDDNPN+++ QP+
Sbjct: 201 SLVLDRLDPRGALFAHRLYRGACRDAGDGRLVKDLAATGRDLRRAVIVDDNPNAYSLQPD 260
Query: 282 NAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVKQF 321
NA+ + PF+DD D EL ++ DD+RDA+K++
Sbjct: 261 NAVPVAPFIDDADDHELERVMGILSIAAEFDDVRDAIKRY 300
>dbj|BAB09212.1| unnamed protein product [Arabidopsis thaliana]
gi|15242476|ref|NP_199382.1| NLI interacting factor
(NIF) family protein [Arabidopsis thaliana]
Length = 272
Score = 199 bits (507), Expect = 7e-50
Identities = 127/279 (45%), Positives = 165/279 (58%), Gaps = 35/279 (12%)
Query: 56 TKSIKDIRRNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPDRKRASYKI 115
TKSI +RN RR R+ + A++ V+A+I++ I + L +KI
Sbjct: 11 TKSISRHQRNYLRRHRKSQIGCSPSPATTTVIATINKSIYRCHRTFLCLFSRHATKGFKI 70
Query: 116 LKKTSPQDDSICRTLVFDGGDNDPSPPLPLLPPSISHRR----------TVFLDLDETLV 165
LK P++D F P S+ H R T+ LDLDETLV
Sbjct: 71 LK---PRED-------FQNS-----------PYSLFHERSGKSFDETKKTIVLDLDETLV 109
Query: 166 HSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASL 225
HS+ P +DFVV P IDG + F+V KRPGVDEFL+ + K+++VVFTA LREYASL
Sbjct: 110 HSSMEKPEVPYDFVVNPKIDGQILTFFVIKRPGVDEFLKKIGEKYQIVVFTAGLREYASL 169
Query: 226 VLDRVD-RNRLVSHRLYRDSCKQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAI 284
VLD++D R++S YRD+C + DG+LVKDL RDL+RVVIVDDNPNS+A QPENA
Sbjct: 170 VLDKLDPERRVISRSFYRDACSEIDGRLVKDLGFVMRDLRRVVIVDDNPNSYALQPENAF 229
Query: 285 LIRPFVDDVFDRELWKLRMFFDGVDCC--DDMRDAVKQF 321
I+PF DD+ D EL KL F G DC +DMR A+K+F
Sbjct: 230 PIKPFSDDLEDVELKKLGEFLYG-DCVKFEDMRVALKEF 267
>ref|NP_174270.1| NLI interacting factor (NIF) family protein [Arabidopsis thaliana]
gi|48310461|gb|AAT41825.1| At1g29770 [Arabidopsis
thaliana] gi|46931238|gb|AAT06423.1| At1g29770
[Arabidopsis thaliana] gi|25513508|pir||C86421 F1N18.17
protein - Arabidopsis thaliana gi|9972367|gb|AAG10617.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 278
Score = 185 bits (470), Expect = 1e-45
Identities = 110/266 (41%), Positives = 159/266 (59%), Gaps = 13/266 (4%)
Query: 60 KDIRRNNNRRWRRKTPIKNAVAASSAVLASIHRRITKFFSKLARLSPDRKRASYKILKKT 119
K R+N N + R + AVAA+ ++ S++ I F ++L R + L+
Sbjct: 20 KHARKNRNHQSRC---LAAAVAAAGSIFTSLNMSIFTFHNRLLRCVS-------RFLRLA 69
Query: 120 SPQDDSICRTLVFDGGDNDPSPPLPLLPPSISHRRTVFLDLDETLVHSNTAPPPE-SFDF 178
+ + R G PL+ + +RT+FLDLDETLVHS PP + DF
Sbjct: 70 TTSSATPTRRPTMKQGYKKLHKREPLIRRN-DKKRTIFLDLDETLVHSTMEPPIRVNVDF 128
Query: 179 VVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSH 238
+VR I+G + +V KRPGV EFLE ++ + V +FTA L EYAS VLD++D+NR++S
Sbjct: 129 MVRIKIEGAVIPMFVVKRPGVTEFLERISKNYRVAIFTAGLPEYASQVLDKLDKNRVISQ 188
Query: 239 RLYRDSCKQEDGKLVKDLSL-AGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRE 297
RLYRDSC + +G+ KDLSL A DL V++VDDNP S++ QP+N + I+PF+DD+ D+E
Sbjct: 189 RLYRDSCTEVNGRYAKDLSLVAKNDLGSVLLVDDNPFSYSLQPDNGVPIKPFMDDMEDQE 248
Query: 298 LWKLRMFFDGVDCCDDMRDAVKQFFT 323
L KL FFDG +D+RDA + +
Sbjct: 249 LMKLAEFFDGCYQYEDLRDAAAELLS 274
>ref|NP_174271.1| NLI interacting factor (NIF) family protein [Arabidopsis thaliana]
Length = 221
Score = 173 bits (438), Expect = 7e-42
Identities = 90/167 (53%), Positives = 118/167 (69%), Gaps = 1/167 (0%)
Query: 153 RRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEV 212
+RT+ LDLDETLVH+ T P DF+V ++ M +V KRPGV EFLE L ++V
Sbjct: 49 KRTIILDLDETLVHATTHLPGVKHDFMVMVKMEREIMPIFVVKRPGVTEFLERLGENYKV 108
Query: 213 VVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSL-AGRDLKRVVIVDD 271
VVFTA L EYAS VLD++D+N ++S RLYRDSC + +GK VKDLSL G+DL+ +IVDD
Sbjct: 109 VVFTAGLEEYASQVLDKLDKNGVISQRLYRDSCTEVNGKYVKDLSLVVGKDLRSALIVDD 168
Query: 272 NPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAV 318
NP+S++ QPEN + I+ FVDD+ D+EL L F + +DMRDAV
Sbjct: 169 NPSSYSLQPENGVPIKAFVDDLKDQELLNLVEFLESCYAYEDMRDAV 215
>pir||D86421 hypothetical protein F1N18.16 - Arabidopsis thaliana
gi|9972366|gb|AAG10616.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 247
Score = 173 bits (438), Expect = 7e-42
Identities = 90/167 (53%), Positives = 118/167 (69%), Gaps = 1/167 (0%)
Query: 153 RRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEV 212
+RT+ LDLDETLVH+ T P DF+V ++ M +V KRPGV EFLE L ++V
Sbjct: 75 KRTIILDLDETLVHATTHLPGVKHDFMVMVKMEREIMPIFVVKRPGVTEFLERLGENYKV 134
Query: 213 VVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSL-AGRDLKRVVIVDD 271
VVFTA L EYAS VLD++D+N ++S RLYRDSC + +GK VKDLSL G+DL+ +IVDD
Sbjct: 135 VVFTAGLEEYASQVLDKLDKNGVISQRLYRDSCTEVNGKYVKDLSLVVGKDLRSALIVDD 194
Query: 272 NPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAV 318
NP+S++ QPEN + I+ FVDD+ D+EL L F + +DMRDAV
Sbjct: 195 NPSSYSLQPENGVPIKAFVDDLKDQELLNLVEFLESCYAYEDMRDAV 241
>gb|AAD28548.1| development protein DG1148 [Dictyostelium discoideum]
gi|66799565|ref|XP_628708.1| carboxy-terminal domain
phosphatase [Dictyostelium discoideum]
gi|60462033|gb|EAL60295.1| development protein DG1148
[Dictyostelium discoideum]
Length = 306
Score = 151 bits (381), Expect = 3e-35
Identities = 85/176 (48%), Positives = 113/176 (63%), Gaps = 4/176 (2%)
Query: 143 LPLLPPSISHR---RTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGV 199
+PL+ P I +T+ LDLDETLVHS+ P DF+V I+G + YV KRP V
Sbjct: 123 IPLMVPMIPRHVGLKTLVLDLDETLVHSSFKPVHNP-DFIVPVEIEGTIHQVYVVKRPFV 181
Query: 200 DEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLA 259
D+FL A+A KFE+VVFTA+L +YA VLD +D R++ +RL+R+SC G VKDLS
Sbjct: 182 DDFLRAIAEKFEIVVFTASLAKYADPVLDFLDTGRVIHYRLFRESCHNHKGNYVKDLSRL 241
Query: 260 GRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMR 315
GRDLK +IVD++P+S+ PENAI I + DD DREL L D + +D+R
Sbjct: 242 GRDLKSTIIVDNSPSSYLFHPENAIPIDSWFDDKDDRELLDLLPLLDDLIKVEDVR 297
>gb|AAH94289.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A)
small phosphatase-like [Mus musculus]
Length = 276
Score = 143 bits (361), Expect = 6e-33
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 139 PSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
PSPP L P ++ ++ V +DLDETLVHS+ P + DF+V IDG + YV
Sbjct: 88 PSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 146
Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
KRP VDEFL+ + FE V+FTA+L +YA V D +DR + RL+R+SC G VK
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206
Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDM 314
DLS GR+L +V+IVD++P S+ PENA+ ++ + DD+ D EL L FF+G+ DD+
Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDV 266
>emb|CAE11805.1| RB serine phosphatase [Homo sapiens]
gi|56549683|ref|NP_001008393.1| small CTD phosphatase 3
isoform 1 [Homo sapiens]
gi|51704233|sp|O15194|CTSL_HUMAN CTD small
phosphatase-like protein (CTDSP-like) (Small C-terminal
domain phosphatase 3) (Small CTD phosphatase 3) (SCP3)
(Nuclear LIM interactor-interacting factor 1)
(NLI-interacting factor 1) (NIF-like protein) (RBSP3)
(YA22 protein) (HYA22)
Length = 276
Score = 143 bits (361), Expect = 6e-33
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 139 PSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
PSPP L P ++ ++ V +DLDETLVHS+ P + DF+V IDG + YV
Sbjct: 88 PSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 146
Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
KRP VDEFL+ + FE V+FTA+L +YA V D +DR + RL+R+SC G VK
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206
Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDM 314
DLS GR+L +V+IVD++P S+ PENA+ ++ + DD+ D EL L FF+G+ DD+
Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDV 266
>ref|NP_598471.2| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A)
small phosphatase-like [Mus musculus]
gi|32812783|emb|CAC69078.2| Mya22 protein [Mus musculus]
gi|51704302|sp|P58465|CTDSL_MOUSE CTD small
phosphatase-like protein (CTDSP-like) (Small C-terminal
domain phosphatase 3) (Nuclear LIM
interactor-interacting factor 1) (NLI-interacting factor
1) (NIF-like protein)
Length = 276
Score = 143 bits (361), Expect = 6e-33
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 139 PSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
PSPP L P ++ ++ V +DLDETLVHS+ P + DF+V IDG + YV
Sbjct: 88 PSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 146
Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
KRP VDEFL+ + FE V+FTA+L +YA V D +DR + RL+R+SC G VK
Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206
Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDM 314
DLS GR+L +V+IVD++P S+ PENA+ ++ + DD+ D EL L FF+G+ DD+
Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDV 266
>gb|AAV63944.1| nuclear LIM factor interactor-interacting protein [Phytophthora
sojae]
Length = 336
Score = 142 bits (359), Expect = 1e-32
Identities = 76/174 (43%), Positives = 108/174 (61%), Gaps = 1/174 (0%)
Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
LP P S + + LDLDETLVHS+ P P DFV+ IDG +V KRPG +EF
Sbjct: 155 LPPRSPDDSDKMCLVLDLDETLVHSSFRPTPNP-DFVIPVEIDGTIHHVFVAKRPGAEEF 213
Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
L +A +E+V++TA+L +YA +LD++D ++ +RLYR C Q +G VKDLSL R+
Sbjct: 214 LVEMAKYYEIVIYTASLSKYADPLLDQLDPEGVIKYRLYRQHCVQYEGNYVKDLSLLARE 273
Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRD 316
L + +IVD++P ++ P+NAI F+DD DREL + F V +D+RD
Sbjct: 274 LSQTIIVDNSPMAYIWHPKNAIGCSSFIDDPNDRELESISRFLSKVLDVEDVRD 327
>gb|AAV63937.1| putative nuclear LIM factor interactor-interacting protein
spore-specific form [Phytophthora infestans]
Length = 297
Score = 142 bits (359), Expect = 1e-32
Identities = 74/174 (42%), Positives = 112/174 (63%), Gaps = 1/174 (0%)
Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
LP + P+ ++ + LDLDETLVHS+ P +S+DF++ IDG YV KRPG +EF
Sbjct: 116 LPPVYPNDVDKKCLVLDLDETLVHSSFRPT-DSYDFIIPVNIDGTVHHVYVCKRPGAEEF 174
Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
L +A +E+V++TA+L +YA +LD++D + +RLYR+ C Q +G VKDLSL RD
Sbjct: 175 LIEMAKYYEIVIYTASLSKYADPLLDKLDPEGTIRYRLYREHCVQYEGSYVKDLSLLDRD 234
Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRD 316
+ +++IVD++P ++A P NAI F+DD DREL + F +D+R+
Sbjct: 235 ITQMIIVDNSPMAYAFHPRNAIGCSSFIDDPNDRELDSIARFLTKFQDVEDVRN 288
>gb|EAL19249.1| hypothetical protein CNBH3480 [Cryptococcus neoformans var.
neoformans B-3501A] gi|57229145|gb|AAW45579.1| protein
phosphatase, putative [Cryptococcus neoformans var.
neoformans JEC21] gi|58271460|ref|XP_572886.1| protein
phosphatase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 613
Score = 142 bits (359), Expect = 1e-32
Identities = 78/177 (44%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 142 PLPLLPPSISH---RRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPG 198
P PLLPP + R+ + LDLDETL+HS+ P + D++V I+ YV KRPG
Sbjct: 431 PAPLLPPVAAKHRGRKCLVLDLDETLLHSSFKQLPTA-DYIVPVEIESQVHNVYVIKRPG 489
Query: 199 VDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSL 258
VD FL +A +E+VVFTA+L +YA VLD +D NR+V+HRL+R+SC G VKDLS
Sbjct: 490 VDHFLTEMAKIYEIVVFTASLSKYADPVLDMLDENRVVAHRLFRESCYNHKGNYVKDLSQ 549
Query: 259 AGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMR 315
GRD++ +I+D++P S+ P NA+ + + D D EL L F + DD+R
Sbjct: 550 LGRDIEHSIIIDNSPASYIFHPNNAVPVSTWFSDPHDSELTDLCPFLADLATVDDVR 606
>gb|AAV63946.1| nuclear LIM factor interactor-interacting protein [Phytophthora
sojae]
Length = 336
Score = 142 bits (357), Expect = 2e-32
Identities = 75/174 (43%), Positives = 108/174 (61%), Gaps = 1/174 (0%)
Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
LP P S + + LDLDETLVHS+ P P DFV+ IDG +V KRPG +EF
Sbjct: 155 LPPRSPDDSDKMCLVLDLDETLVHSSFRPTPNP-DFVIPVEIDGTIHHVFVAKRPGAEEF 213
Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
L +A +E+V++TA+L +YA +LD++D ++ +RLYR C Q +G VKDLSL R+
Sbjct: 214 LVEMAKYYEIVIYTASLSKYADPLLDQLDPEGVIKYRLYRQHCVQYEGNYVKDLSLLARE 273
Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRD 316
L + +IVD++P ++ P++AI F+DD DREL + F V +D+RD
Sbjct: 274 LSQTIIVDNSPMAYIWYPKSAIGCSSFIDDPNDRELESISRFLTNVHDVEDVRD 327
>emb|CAE11804.1| RB serine phosphatase [Homo sapiens] gi|31074181|gb|AAP34400.1|
small CTD phosphatase 3 [Homo sapiens]
gi|56549681|ref|NP_005799.2| small CTD phosphatase 3
isoform 2 [Homo sapiens]
Length = 265
Score = 141 bits (356), Expect = 2e-32
Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 6/198 (3%)
Query: 121 PQDDSICRTLVFDGGDNDPSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESF 176
P S+ LV + G PP L P ++ ++ V +DLDETLVHS+ P +
Sbjct: 60 PSSPSVLPPLVEENGGLQ-KPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA- 117
Query: 177 DFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLV 236
DF+V IDG + YV KRP VDEFL+ + FE V+FTA+L +YA V D +DR +
Sbjct: 118 DFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVF 177
Query: 237 SHRLYRDSCKQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDR 296
RL+R+SC G VKDLS GR+L +V+IVD++P S+ PENA+ ++ + DD+ D
Sbjct: 178 RARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDT 237
Query: 297 ELWKLRMFFDGVDCCDDM 314
EL L FF+G+ DD+
Sbjct: 238 ELLDLIPFFEGLSREDDV 255
>gb|AAV63945.1| nuclear LIM factor interactor-interacting protein [Phytophthora
sojae]
Length = 335
Score = 141 bits (356), Expect = 2e-32
Identities = 71/174 (40%), Positives = 111/174 (62%), Gaps = 1/174 (0%)
Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
LP L P ++++ + LDLDETLVHS+ P D+++ IDG + YV KRPG +EF
Sbjct: 154 LPPLAPDDANKKCLVLDLDETLVHSSFRPTTNP-DYIIPVDIDGTIHQVYVCKRPGAEEF 212
Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
L ++ +E+VV+TA+L +YA +LD++D ++ +RL+R+ C Q +G VKDLSL R+
Sbjct: 213 LVEMSKYYEIVVYTASLSKYADPLLDKLDLENVIKYRLFREHCVQYEGNYVKDLSLLDRE 272
Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRD 316
+ + +I+D++P S+ P NAI F+DD DREL + F + +D+RD
Sbjct: 273 IPQTIIIDNSPMSYIFHPRNAIGCSSFIDDPNDRELESISRFLTKIHDVEDVRD 326
>dbj|BAA21667.1| HYA22 [Homo sapiens]
Length = 340
Score = 141 bits (356), Expect = 2e-32
Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 6/198 (3%)
Query: 121 PQDDSICRTLVFDGGDNDPSPPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESF 176
P S+ LV + G PP L P ++ ++ V +DLDETLVHS+ P +
Sbjct: 135 PSSPSVLPPLVEENGGLQ-KPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA- 192
Query: 177 DFVVRPVIDGVPMEFYVKKRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLV 236
DF+V IDG + YV KRP VDEFL+ + FE V+FTA+L +YA V D +DR +
Sbjct: 193 DFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVF 252
Query: 237 SHRLYRDSCKQEDGKLVKDLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDR 296
RL+R+SC G VKDLS GR+L +V+IVD++P S+ PENA+ ++ + DD+ D
Sbjct: 253 RARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDT 312
Query: 297 ELWKLRMFFDGVDCCDDM 314
EL L FF+G+ DD+
Sbjct: 313 ELLDLIPFFEGLSREDDV 330
>ref|NP_001001316.1| nuclear LIM interactor-interacting factor 1 [Gallus gallus]
gi|6572952|gb|AAF17481.1| NLI-interacting factor isoform
T1; NLI/Ldb1/CLIM interacting factor [Gallus gallus]
gi|17865514|sp|Q9PTJ6|CTSL_CHICK CTD small
phosphatase-like protein (CTDSP-like) (Small C-terminal
domain phosphatase 3) (Nuclear LIM
interactor-interacting factor 1) (NLI-interacting factor
1)
Length = 275
Score = 141 bits (355), Expect = 3e-32
Identities = 81/174 (46%), Positives = 110/174 (62%), Gaps = 5/174 (2%)
Query: 139 PSPP----LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
PSPP LP L S ++ V +DLDETLVHS+ P + DF+V IDG + YV
Sbjct: 87 PSPPAKYLLPELTASDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVL 145
Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
KRP VDEFL+ + FE V+FTA+L +YA V D +DR + RL+R+SC G VK
Sbjct: 146 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 205
Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGV 308
DLS GR+L +V+IVD++P S+ PENA+ ++ + DD+ D EL L FF+G+
Sbjct: 206 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGL 259
>gb|AAP43959.1| NIF [Xenopus laevis]
Length = 276
Score = 140 bits (354), Expect = 4e-32
Identities = 80/174 (45%), Positives = 110/174 (62%), Gaps = 5/174 (2%)
Query: 139 PSPP----LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVK 194
PSPP LP L S ++ V +DLDETLVHS+ P + DF+V IDG + YV
Sbjct: 88 PSPPTKYLLPELKVSEYGKKCVVIDLDETLVHSSFKPINNA-DFIVPVEIDGTIHQVYVL 146
Query: 195 KRPGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVK 254
KRP VDEFL+ + FE V+FTA+L +YA V D +DR + + RL+R+SC G VK
Sbjct: 147 KRPHVDEFLQKMGEMFECVLFTASLAKYADPVADLLDRWGVFNARLFRESCVFHRGNYVK 206
Query: 255 DLSLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGV 308
DLS GR+L +V+I+D++P S+ PENA+ + + DD+ D EL L FF+G+
Sbjct: 207 DLSRLGRELSKVIIIDNSPASYIFHPENAVPVMSWFDDMADTELLDLLPFFEGL 260
>gb|AAV63938.1| putative nuclear LIM factor interactor-interacting protein
cleavage-specific form [Phytophthora infestans]
Length = 339
Score = 140 bits (354), Expect = 4e-32
Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Query: 143 LPLLPPSISHRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKRPGVDEF 202
LP P + ++ + LDLDETLVHS T P ++DF++ IDG YV KRPG +EF
Sbjct: 158 LPPASPIDADKKCLVLDLDETLVHS-TFRPTNNYDFIIPVEIDGSTHLVYVCKRPGAEEF 216
Query: 203 LEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDLSLAGRD 262
L +A +E+VV+TA+L YA +LD++D + +RLYR+ C Q +G VKDLSL RD
Sbjct: 217 LIEMAKYYEIVVYTASLSVYADPLLDKLDPEGTIRYRLYREHCVQYEGCYVKDLSLLDRD 276
Query: 263 LKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDMRDAVKQF 321
+ + +IVD++P ++A P NAI F DD+ DREL + F +D+R+ ++Q+
Sbjct: 277 ITQTIIVDNSPMAYAFHPRNAIGCSSFYDDLNDRELQSIGRFLTKFQDVEDVRNHMQQW 335
>ref|XP_516364.1| PREDICTED: similar to RB serine phosphatase [Pan troglodytes]
Length = 924
Score = 139 bits (350), Expect = 1e-31
Identities = 79/178 (44%), Positives = 111/178 (61%), Gaps = 5/178 (2%)
Query: 141 PPLPLLPPSIS----HRRTVFLDLDETLVHSNTAPPPESFDFVVRPVIDGVPMEFYVKKR 196
PP L P ++ ++ V +DLDETLVHS+ P + DF+V IDG + YV KR
Sbjct: 707 PPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA-DFIVPVEIDGTIHQVYVLKR 765
Query: 197 PGVDEFLEALAAKFEVVVFTAALREYASLVLDRVDRNRLVSHRLYRDSCKQEDGKLVKDL 256
P VDEFL+ + FE V+FTA+L +YA V D +DR + RL+R+SC G VKDL
Sbjct: 766 PHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDL 825
Query: 257 SLAGRDLKRVVIVDDNPNSFANQPENAILIRPFVDDVFDRELWKLRMFFDGVDCCDDM 314
S GR+L +V+IVD++P S+ PENA+ ++ + DD+ D EL L FF+G+ DD+
Sbjct: 826 SRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDV 883
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,631,871
Number of Sequences: 2540612
Number of extensions: 24699563
Number of successful extensions: 60418
Number of sequences better than 10.0: 360
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 59691
Number of HSP's gapped (non-prelim): 411
length of query: 328
length of database: 863,360,394
effective HSP length: 128
effective length of query: 200
effective length of database: 538,162,058
effective search space: 107632411600
effective search space used: 107632411600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0118a.3