BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0114.7
(1898 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 684 0.0
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 587 e-165
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 583 e-164
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 569 e-160
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 553 e-155
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 546 e-153
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 546 e-153
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 538 e-151
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 534 e-149
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 527 e-147
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 527 e-147
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 526 e-147
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 526 e-147
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 525 e-147
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 509 e-142
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 482 e-134
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 480 e-133
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 468 e-129
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 466 e-129
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 462 e-128
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 684 bits (1766), Expect = 0.0
Identities = 427/1239 (34%), Positives = 641/1239 (51%), Gaps = 94/1239 (7%)
Query: 692 VYASPIPANREILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDF-LPNRAAMFASV 750
VYA+P + R LW + + P L+ GDFN IL+ E GG+ L + F
Sbjct: 6 VYAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDW 65
Query: 751 LDTCQLVDLGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDH 810
++ L+DLG G +FTW + + +++KRLDR ++ + +AVV L + SDH
Sbjct: 66 INELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDH 125
Query: 811 CPILLQCGSPQTLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEECITSKLERVREASTVF 870
P+ +Q Q R L W
Sbjct: 126 APLYVQLEPLQQ-------RKLRKW----------------------------------- 143
Query: 871 NKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQKA 930
N+EVFG+I RK + A ++ VQ L ++ D++ E L +E +L QEE L +QK+
Sbjct: 144 NREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKS 203
Query: 931 RENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFT-- 988
RE + LGDRNT +FHT T+IRRR+NR+ LK +D W D+ L+ + ++ L++
Sbjct: 204 REKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLE 263
Query: 989 GITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKK 1048
++ + + T F S+S K+ LLQ K EV A+ SM + APG DG+QP FY++
Sbjct: 264 DVSEVRNMLPTGG-FASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQ 322
Query: 1049 YWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVIT 1108
W VG S+ V E F+ G + + D L+VLI KV +P ++ RP+SLCNV FK+IT
Sbjct: 323 CWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIIT 382
Query: 1109 KVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKSTAKRGMVAFKIDLEK 1168
K++V RL+ + KLIGP Q+SF+PGR ++DN L QE +H M + ++G + K+DLEK
Sbjct: 383 KMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEK 442
Query: 1169 AYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPM 1228
AYD V W FLQETLE G E + IM+ VT +S+LWNG R +F P RGLRQGDP+
Sbjct: 443 AYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPL 502
Query: 1229 SPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLL 1288
SPYLFVLC+ERL LI++ V K +WKPI +S G +SH+ FADD++LF EASVAQ+ ++
Sbjct: 503 SPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRII 562
Query: 1289 ASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGR 1348
++ FC++SG K++L KSK S VS ++ IS + I +LGKYLG P+ R
Sbjct: 563 RRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKR 622
Query: 1349 IHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKIN 1408
+++ F +LE + +L W+ LSLAGR+ L K+V++++P + M +P ++
Sbjct: 623 MNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLD 682
Query: 1409 QLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNK 1468
+ R+F+W HL++W KI +PK GG+G+R N AL+ K W L+
Sbjct: 683 RYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKES 742
Query: 1469 LWVRVLSHKY----LSNSSVLQVQAKPQDSQVWKGL-LKARDRLHTGFVFRLGNGET-SL 1522
LW RV+ KY + ++S L+ Q P+ S W+ + + R+ + G + G+G T
Sbjct: 743 LWARVVRKKYKVGGVQDTSWLKPQ--PRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRF 800
Query: 1523 WHDDWSGMGNIAPAVPY-VDIHDIDRRLCDLVD----NGTWNMQVLYTSLPVDVLERLQK 1577
W D W P V D+ R+ D WN+++L LP V RL
Sbjct: 801 WLDRWLLQ---EPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLS 857
Query: 1578 IKPTIVPNRQDVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDD-WNWIWKLKVPEKIRT 1636
+ + D +W+ G +TVR AY LQ P + +N IWKL PE++R
Sbjct: 858 VVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRV 917
Query: 1637 FVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAF-AW 1695
F+WL QN + N+ R R ++ + CS C+ EE ILH LR CP + +W +
Sbjct: 918 FIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRH 977
Query: 1696 PNFTAGDHSSWIRSQARSNNGV---KFIVGLWGVWKWRNNMIFEDSPWSLEEAWRRVCHE 1752
F + W+ + G+ F +G+W WKWR +F + R++C +
Sbjct: 978 HEFFSQSLLEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDVFGE---------RKICRD 1028
Query: 1753 HDEIVAVLGEEAGSMDCW-LGS-----------RWQPPMAGSIKLNVDGSYRDVDDSSGV 1800
+ + + EE + +G+ RWQ P G +K+ DG+ R +
Sbjct: 1029 RLKFIKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAA 1088
Query: 1801 GGLARDPSGNWLFGFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVVEVDC----ADL 1856
GG R+ G WL GF + A LAE GL + W +G+R + +++DC L
Sbjct: 1089 GGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFL 1148
Query: 1857 LQSLDDEDRRRFLPILGDIRNMKDRGWRISLERVRRDCN 1895
+ + FL L + R W + + V R+ N
Sbjct: 1149 STGVSNAHPLSFLVRL--CQGFFTRDWLVRVSHVYREAN 1185
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 587 bits (1512), Expect = e-165
Identities = 405/1361 (29%), Positives = 651/1361 (47%), Gaps = 78/1361 (5%)
Query: 588 KLISWNVRGALYANGKLAIRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEA 647
+++SWN +G +RE+ P+V L ET+ + + LGFF +H E
Sbjct: 2 RILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVEP 61
Query: 648 RGFSGGIWVLANTSVPYNFRVIDTHQQVV-TFEVWKDNLSWVCSAVYASPIPANREILWR 706
G SGG+ ++ SV +V+ + ++++ +W+D + + +Y P+ A R LW
Sbjct: 62 IGKSGGLALMWKDSV--QIKVLQSDKRLIDALLIWQDK-EFYLTCIYGEPVQAERGELWE 118
Query: 707 HMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDFLPNRAAM-FASVLDTCQLVDLGAVGRR 765
+T L PW+L GDFNE++ PSE GG + + F +L++C L ++ G +
Sbjct: 119 RLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQ 178
Query: 766 FTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAH 825
F+W+ ND L+ RLDR + + W FP A L ++ SDH P++
Sbjct: 179 FSWYGNRNDELVQC-RLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKW 237
Query: 826 NRPFRFLAAWADHPDFAAVVDNAWRSGEECITSKLERVREASTVFNKEVFGNIFRRKRHV 885
F++ W F ++ N W S + T+ L + AS +E+ K
Sbjct: 238 -AGFKYDKRWVQREGFKDLLCNFW-SQQSTKTNALMMEKIASC--RREISKWKRVSKPSS 293
Query: 886 EARLRGVQRELDRRVTS------DMVLFEAELQREYRNILRQEELL*YQKARENRVHLGD 939
R++ +Q +LD ++ + EL +EY N EE +K+R + GD
Sbjct: 294 AVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYNN----EEQFWQEKSRIMWMRNGD 349
Query: 940 RNTAYFHTQTLIRRRKNRVHRLKLEDGT-WCGDEEVLKRVVHGFFVNLFTGITPLASPRV 998
RNT YFH T RR +NR+ +L E+G W DE+ L RV +F LF +
Sbjct: 350 RNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDED-LGRVAEAYFKKLFASEDVGYTVEE 408
Query: 999 THDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLW 1058
+L P +S + + LL P+ K+EV+ A S+N + PG DG F Y+++W +GD +
Sbjct: 409 LENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQIT 468
Query: 1059 HMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPF 1118
MV+ F+ G + E + + LIPK+ + + D RPISLCNV +KVI K++ NRL+
Sbjct: 469 EMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKI 528
Query: 1119 LRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKST-AKRGMVAFKIDLEKAYDSVSWSF 1177
L LI Q++F+ GR DN +A E++H +S + +A K D+ KAYD V W F
Sbjct: 529 LPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPF 588
Query: 1178 LQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCM 1237
L++ + GF + I LIM V S + +L NG P RGLRQGDP+SPYLFV+C
Sbjct: 589 LEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICT 648
Query: 1238 ERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCD 1297
E L ++QS K +++++ PPISHL FADD + +C+ + + + ++ +
Sbjct: 649 EMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSL 708
Query: 1298 SSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFP--LKGGRIHRNRFN 1355
+SG ++N KS K +SE + + I G YLG P +G ++ +
Sbjct: 709 ASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKV--ATLS 766
Query: 1356 FLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFI 1415
+L + + +K+ W++N LS G+ L K+V A+PTYTM F +P+ + +I ++ F
Sbjct: 767 YLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFW 826
Query: 1416 WSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLS 1475
W K G G H W +++PK GGLG ++ E N AL+GK +W ++ + + L +V
Sbjct: 827 WKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFK 886
Query: 1476 HKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWHDDWSGMGNIA 1534
+Y S S L + S WK + +A+ + G +GNGET ++W D W G
Sbjct: 887 SRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAK 946
Query: 1535 PAVPYVDIHDIDRRLCD---------LVDNGTWNMQVLYTSLPVDVLERLQKIKPTIVPN 1585
A H + + + L D WN ++ P + E + ++P
Sbjct: 947 AAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKET 1006
Query: 1586 RQDVWTWETNSMGIYTVRGAYRWL---------QDQQSHLPVVDD-WNWIWKLKVPEKIR 1635
R D +TWE + G Y+V+ Y W+ Q+ P +D + IWKL VP KI
Sbjct: 1007 R-DRFTWEYSRSGHYSVKSGY-WVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIH 1064
Query: 1636 TFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWL------- 1688
F+W + N L V + +A SC RC + E + H L CP ++ W
Sbjct: 1065 HFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAP 1124
Query: 1689 KFGAFAWPNFTAGDH-SSWIRSQARSNNGVKFIVG-LWGVWKWRNNMIFEDSPWSLE--- 1743
G +A F H S +SQ ++ I LW +WK RN+++F+ ++
Sbjct: 1125 PGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVI 1184
Query: 1744 -------EAWRRVCHEHDEIVAVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDD 1796
+AW ++ + + +WQPP G +K N DG++
Sbjct: 1185 LKATEDMDAWNNRKEPQPQVTSSTRDRC--------VKWQPPSHGWVKCNTDGAWSKDLG 1236
Query: 1797 SSGVGGLARDPSGNWLF-GFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVVEVDCAD 1855
+ GVG + R+ +G L+ G A + E +AL + + YR ++ E D
Sbjct: 1237 NCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQY 1296
Query: 1856 LLQSLDDE-DRRRFLPILGDIRNMKDRGWRISLERVRRDCN 1895
L+ + +E D P + DIRN+ + + RR+ N
Sbjct: 1297 LVSLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGN 1337
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 583 bits (1503), Expect = e-164
Identities = 407/1329 (30%), Positives = 633/1329 (47%), Gaps = 59/1329 (4%)
Query: 585 EEFKLISW--NVRGALYANGKLAIRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPI 642
E KL++W N RG A +R LV+S +P + L ET+ + ++ SLGF
Sbjct: 2 EPNKLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGS 61
Query: 643 HIEEARGFSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANRE 702
G SGG+ + T+ + R ++H V ++ W S VY P R
Sbjct: 62 FAVSCEGLSGGLALFWTTAYTVSLRGFNSHFIDVLVST-EELPPWRISFVYGEPKRELRH 120
Query: 703 ILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVRG-GDFLPNRAAMFASVLDTCQLVDLGA 761
W + L ++ PWL GDFNE+L E G + F S LD C L+DLG
Sbjct: 121 FFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGF 180
Query: 762 VGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCG--- 818
VG +FTW K + RLDRA+ + E+ F D +V+ + SDH I +
Sbjct: 181 VGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRN 240
Query: 819 -SPQTLAHNRPFRFLAAWADHPDFAAVVDNAWR-SGEECIT-----SKLERVREASTVFN 871
+ + + FRF AAW D+ VV+N+WR S C+ S L++V + ++
Sbjct: 241 HGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWS 300
Query: 872 KEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAEL-QREYRNILRQEELL*YQKA 930
K FG++ R+ +E +L+ +++ +D+V+ E +L +++ + +EE++ Q++
Sbjct: 301 KASFGSVRRKILKMERKLKSLRQS----PVNDVVIQEEKLIEQQLCELFEKEEIMARQRS 356
Query: 931 RENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGI 990
R + + GDRNTA+FH + RRR NR+ L +DG+ C +E +KR+ F+ NLF+
Sbjct: 357 RVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSS- 415
Query: 991 TPLASPRVTHDLFPSLSVE-AKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKY 1049
P S D P+ + L + +E++ AL M S APG DGF FY+ +
Sbjct: 416 EPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTH 475
Query: 1050 WNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITK 1109
W + + + + V+ ++ E L D +VVLIPKV+ S + RPISLCNV +K+ +K
Sbjct: 476 WGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASK 535
Query: 1110 VLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKSTAKRGMVAFKIDLEKA 1169
VL NRL+PFL ++ QS+F+PGR D+A +A E +H + K K A KID+ KA
Sbjct: 536 VLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKIDMMKA 595
Query: 1170 YDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMS 1229
YD V W++L L GF + IN +M V+S + ++ NG P RG+RQGDP+S
Sbjct: 596 YDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPIS 655
Query: 1230 PYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLA 1289
PYLF+LC E LS L+ G+ + I+ ++GPPISHL FADD + F +A V L
Sbjct: 656 PYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALK 715
Query: 1290 STMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRI 1349
+T++ +C +SG KINL KS K + VK S+ + YLG P + G
Sbjct: 716 NTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLA 775
Query: 1350 HRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQ 1409
N F FL E I +++ W LS AG + K+V A+P Y M F +P + K+
Sbjct: 776 TTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKT 835
Query: 1410 LIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKL 1469
I W + G H +W ++ PK GG+G R+ N A++G+ W L+ P+ L
Sbjct: 836 CIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSL 895
Query: 1470 WVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWHDDWS 1528
RVL +Y NSS + S W+ LL R+ L G + +G+G+T ++ D+W
Sbjct: 896 CSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWI 955
Query: 1529 GMGNIAPAVPYVDIHDIDRRLCDLV--DNGTWNMQVLYTSLPVDVLERLQKIKPTIVPNR 1586
G V + D + L+ D W+ ++ + PVD+ + + +I P
Sbjct: 956 -PGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSLFPVDIAKEILQI-PISRHGD 1013
Query: 1587 QDVWTWETNSMGIYTVRGAYR------WLQDQQSH--------LPVVDDWNWIWKLKVPE 1632
D +W + +G+Y+VR AY + DQ + L DW +WK+ P
Sbjct: 1014 ADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMASRLLESQKDWKGLWKINAPG 1073
Query: 1633 KIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGA 1692
K++ +W L R + ++ C C+ ++ + H CP + ++W +
Sbjct: 1074 KMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNR-DDTVEHVFLFCPFAAQIWEEIKG 1132
Query: 1693 FAWPNFTAGDHSS---WI---RSQARSNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAW 1746
S+ WI + S+ V W +W+ RNN + +
Sbjct: 1133 KCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVV 1192
Query: 1747 RRVCHEHDEIV-----AVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVG 1801
++ D I+ V G+ G+ RWQPP A +N D + + GVG
Sbjct: 1193 IKILSYVDMILKHNTKTVDGQRGGNTQAI--PRWQPPPASVWMINSDAAIFSSSRTMGVG 1250
Query: 1802 GLARDPSGNWLFGFLAHRRGGNAF---LAEAQALLLGLELVWARGYRDIVVEVDCADLLQ 1858
L RD +G L + LAEA A+ L L G IV+ DC +++
Sbjct: 1251 ALIRDNTGKCLVA--CSEMISDVVLPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIR 1308
Query: 1859 SLDDEDRRR 1867
+ R R
Sbjct: 1309 RIQTSGRDR 1317
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 569 bits (1466), Expect = e-160
Identities = 334/915 (36%), Positives = 509/915 (55%), Gaps = 59/915 (6%)
Query: 759 LGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCG 818
+G G RFTW + + ++KRLDR L ++ + +A++ C
Sbjct: 1 MGFKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALL----------------CP 44
Query: 819 SPQTLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEECITSKLERVREASTVFNKEVFGNI 878
+ A RPFRF AAW H F ++ +W +G + L R+R +NKEVFGNI
Sbjct: 45 AQNVDARRRPFRFEAAWLSHEGFKELLTASWDTGLSTPVA-LNRLRWQLKKWNKEVFGNI 103
Query: 879 FRRKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQKARENRVHLG 938
RK V + L+ VQ L+ T D+++ E L +E+ +L QEE L +QK+RE + LG
Sbjct: 104 HVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLALG 163
Query: 939 DRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPRV 998
DRNT +FHT T+IRRR+NR+ LK + W ++E L+++ ++ L++ + ++ R
Sbjct: 164 DRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYS-LEDVSVVRG 222
Query: 999 T--HDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDS 1056
T + FP L+ E K+ L +P +DEV A+ SM + APG DG+QP FY++ W VG+S
Sbjct: 223 TLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGES 282
Query: 1057 LWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLR 1116
+ V E F+ G + ++ D+L+VL+ KV +P + RP+SLCNV FK+ITK++V RL+
Sbjct: 283 VSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLK 342
Query: 1117 PFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKSTAKRGMVAFKIDLEKAYDSVSWS 1176
+ KLIGP Q+SF+PGR + DN + QE +H M + ++G + K+DLEKAYD + W
Sbjct: 343 NVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWD 402
Query: 1177 FLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLC 1236
FL ETLE G E I IM V ++S+LWNG + +F P RGLRQGDP+SPYLFVLC
Sbjct: 403 FLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLC 462
Query: 1237 MERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFC 1296
+ERL I++ V +GDWK I +S+ GP +SH+ FADD++LF EASVAQ
Sbjct: 463 IERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASVAQ------------ 510
Query: 1297 DSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNF 1356
K++L KSK S VS ++ I+ I +LGKYLG P+ RI+++ F
Sbjct: 511 -----KVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGE 565
Query: 1357 LLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIW 1416
+LE + +L W++ LSLAGR+ L K+V+ ++P +TM +P + +++++ R+F+W
Sbjct: 566 VLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLW 625
Query: 1417 SGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSH 1476
HL++W+K+ +PK GGLG+R ++ N AL+ K W L++ LW RVL
Sbjct: 626 GSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRR 685
Query: 1477 KY----LSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGETSLWHDDWSGMGN 1532
KY + +SS L K S W+ + G R G + + H+
Sbjct: 686 KYKVTDVHDSSWL--VPKATWSSTWRSI---------GVGLREGVAKGWILHEPL----- 729
Query: 1533 IAPAVPYVDIHDIDRRLCDLVDNGT-WNMQVLYTSLPVDVLERLQKIKPTIVPNRQDVWT 1591
A + +++ R+ + G W+M L LP V +RL + V +D +
Sbjct: 730 CTRATCLLSPEELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRIS 789
Query: 1592 WETNSMGIYTVRGAYRWLQDQQSHLPVVDD-WNWIWKLKVPEKIRTFVWLTLQNSLQVNL 1650
W+ S G +TV AY L ++ P ++ + IW + PE++R F+WL Q + N+
Sbjct: 790 WQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNV 849
Query: 1651 HRFRCKMAASPSCSR 1665
R R + C R
Sbjct: 850 ERVRRHIGDIEVCQR 864
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 553 bits (1425), Expect = e-155
Identities = 385/1343 (28%), Positives = 618/1343 (45%), Gaps = 118/1343 (8%)
Query: 590 ISWNVRGALYANGKLAIRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARG 649
++WN RG +R L++ + L ETR ++S L F + G
Sbjct: 639 LAWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEG 698
Query: 650 FSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWRHMT 709
SGG+ + + SV + + I+ + D W + VY P NR +W +
Sbjct: 699 KSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMWSLLR 758
Query: 710 LLRRRFLLPWLLLGDFNEILFPSE-VRGGDFLPNRAAMFASVLDTCQLVDLGAVGRRFTW 768
+R+ LPW+++GDFNE L+ E + F L C L DLG G T+
Sbjct: 759 TIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGVPHTY 818
Query: 769 FQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQ-CGSPQTLAHNR 827
+ + + RLDRA+ D +W+ FP+A V L SDH PILL+ T +
Sbjct: 819 DNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQK 878
Query: 828 PFRFLAAWADHPDFAAVVDNAW-----RSGEECITSKLERVREASTVFNKEVFGNIFRRK 882
+ W P+ V++ AW ++ I L RV A ++K +
Sbjct: 879 CLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKT-------KV 931
Query: 883 RHVEARLRGVQRELDRRVTSDMVLFEAELQREYRN-ILRQEELL*YQKARENRVHLGDRN 941
++V L +++L+ + S+ ++ N +L +EE+L Q++R N + GDRN
Sbjct: 932 KNVGKELEKARKKLEDLIASNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRN 991
Query: 942 TAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPRVTHD 1001
T +FH++ + R +KN++ +L+ E+G VL+ + +F ++ L VT
Sbjct: 992 TRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRL 1051
Query: 1002 LFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMV 1061
++ L Q +++E+ A+ + +P DGF FY++ W + + V
Sbjct: 1052 FQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAV 1111
Query: 1062 KEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRK 1121
+ FQ G + + + D +VLIPK DQP ++D RPISLCNV +KV++K LVNRLRP L
Sbjct: 1112 RNFFQSGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDD 1171
Query: 1122 LIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKS-TAKRGMVAFKIDLEKAYDSVSWSFLQE 1180
L+ QS+F+ GR DNA LA E H + K+ A A+K+DL KAYD V W FL+
Sbjct: 1172 LVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLEL 1231
Query: 1181 TLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERL 1240
L GF ++ IM VT+ + S+ +NG L +F P RGLRQG+P+SP+LF+ + L
Sbjct: 1232 ALNKLGFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGL 1291
Query: 1241 SVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSG 1300
S+L++ V + P+++ + P IS+L FADD LLF +A + ++ + + +G
Sbjct: 1292 SLLLKEKVAQNSLTPLKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTG 1351
Query: 1301 LKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLES 1360
IN +K + + V + I + + +YLGFP GR+H+ RF L
Sbjct: 1352 QLINPAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAK 1411
Query: 1361 IQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKG 1420
I +++ W N LS G+ L K+VI A+P Y M +F P V ++ ++ R+F W
Sbjct: 1412 IAKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADN 1471
Query: 1421 GGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHKYLS 1480
G H W+ +T+ K GGLG RD +L N AL+ + W L+ PN L +VL KY
Sbjct: 1472 GRRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFP 1531
Query: 1481 NSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWHDDWSGMGNIAPAVPY 1539
+ S+ S W G+ D L G ++R+GNG + +W D W +P
Sbjct: 1532 HGSLTDTTFSANASPTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPW---------IP- 1581
Query: 1540 VDIHDIDRR------------LCDLV-DNGTWN---MQVLYTSLPVDVLERLQKIKPTIV 1583
D+ RR + DL+ ++GTW+ + + + D+++++ I +
Sbjct: 1582 ---RDLSRRPVSSKANCRLKWVSDLIAEDGTWDSAKINQYFLKIDADIIQKI-CISARL- 1636
Query: 1584 PNRQDVWTWETNSMGIYTVRGAYRW-LQ-------DQQSHLPVVDDWNWIWKLKVPEKIR 1635
+D W + G ++VR AY+ LQ S + W IWK VP+K+R
Sbjct: 1637 --EEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVR 1694
Query: 1636 TFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAW 1695
F W NSL ++ + + C C +ED H L C H+ LW+
Sbjct: 1695 IFAWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSLWV------- 1747
Query: 1696 PNFTAGDHSSWIRSQARSNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAWRRVCHEHDE 1755
N G K++V + + + +P + W R
Sbjct: 1748 -NLEKG----------------KYVVSV----NFPKTTAIKHTPGAENRRWER------- 1779
Query: 1756 IVAVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWLFGF 1815
P G +KLNVDGS+ + G+G + R+ GN +F
Sbjct: 1780 ----------------------PRNGWMKLNVDGSFDINSEKGGIGMILRNCLGNVIFSS 1817
Query: 1816 LAHRRGGNAFL-AEAQALLLGLELVWARGYRDIVVEVDCADLLQSLD--DEDRRRFLPIL 1872
+ L AE A + GL L I VE DC+ ++Q L+ D+DR I
Sbjct: 1818 CRSLDSCSGPLEAELHACVEGLHLALHWTLLPIQVETDCSSVIQLLNHPDKDRSVLANIA 1877
Query: 1873 GDIRNMKDRGWRISLERVRRDCN 1895
+ +++ +I++ +V+R N
Sbjct: 1878 QEAKSLMAGDRQIAISKVQRSQN 1900
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 546 bits (1407), Expect = e-153
Identities = 400/1321 (30%), Positives = 603/1321 (45%), Gaps = 113/1321 (8%)
Query: 609 LVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARGFSGGIWVLANTSVPYNF-- 666
L R D+ L+ET Q +V LGF + + G SGG+ ++ +V +
Sbjct: 404 LFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLIS 463
Query: 667 ---RVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWRHMTLLRRRFLLPWLLLG 723
R+ID+H VTF +N S+ S VY P + R LW+ + + WLL+G
Sbjct: 464 QDERLIDSH---VTF----NNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVG 516
Query: 724 DFNEILFPSEVRGGDFLPNRAAM-FASVLDTCQLVDLGAVGRRFTWFQKANDRLILSKRL 782
DFNEIL +E GG F +++ C + D+ + G RF+W + + + L
Sbjct: 517 DFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCC-L 575
Query: 783 DRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWADHPDFA 842
DR + W FP A ++ L+ SDH P+L+ ++ FRF D P F
Sbjct: 576 DRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFP-RRSKLFRFDNRLIDIPTFK 634
Query: 843 AVVDNAWRSGEEC----ITSKLERVREASTVFNKEVFGNIFRRKRHVEARLRGVQRELDR 898
+V +WR+ IT ++ R+A N +R + +++ L E R
Sbjct: 635 RIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAM-ESTR 693
Query: 899 RVTSDMVLFEAELQREYRNILRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNRV 958
RV ++ +LQ EE+ QK+R + GD+NT YFH T R +NRV
Sbjct: 694 RVDRQLI---PQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRV 750
Query: 959 HRLKLEDGT-WCGDEEVLKRVVHGFFVNLFTGITPLASPRVTHDLFPSLSVEAKSLLLQP 1017
+ + + G + GD+E+ FF N+F+ SP D +++ L +
Sbjct: 751 NTIMDDQGRMFTGDKEIGNHA-QDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKE 809
Query: 1018 VRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDI 1077
E+ A+ + APG DG FYK W+ VG + VK+ F+ + ++
Sbjct: 810 FSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHT 869
Query: 1078 LVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTM 1137
+ +IPK+ P+T+ D RPI+LCNV +KVI+K LVNRL+ L ++ Q++F+PGR
Sbjct: 870 NICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIIN 929
Query: 1138 DNAFLAQEVIHHMS-KSTAKRGMVAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIM 1196
DN +A EV+H + + + +A K D+ KAYD V W FL+ T+ L+GF I IM
Sbjct: 930 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 989
Query: 1197 SSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPI 1256
++V S S+L NG P RG+RQGDP+SPYLF+LC + LS LI GD + +
Sbjct: 990 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 1049
Query: 1257 RLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGV 1316
R+ P I+HL FADD L FC+A+V L ++ SG KIN+ KS V
Sbjct: 1050 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 1109
Query: 1317 SEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLA 1376
+ + + IP GKYLG P + GR + F ++++ ++++ +W A LS A
Sbjct: 1110 YGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 1169
Query: 1377 GRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQP 1436
G+ + KSV AMP Y M F +P+G+ +I L+ +F W G V W+++
Sbjct: 1170 GKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYS 1229
Query: 1437 KDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQV 1496
K GGLG RD N AL+ K W L+ PN L+ RV+ +Y + S+L + + Q S
Sbjct: 1230 KKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYG 1289
Query: 1497 WKGLLKARDRLHTGFVFRLGNGETSLWHDDWSGMGNIAPAVPYVDIHDIDRRLCDLVDNG 1556
W LL L G +G+G+ G+ NI + P + + + ++ N
Sbjct: 1290 WASLLDGIALLKKGTRHLIGDGQNIR-----IGLDNIVDSHPPRPL-NTEETYKEMTINN 1343
Query: 1557 TWNMQVLY-------TSLPVD-----VLERLQKIKPTIVPNRQDVWTWETNSMGIYTVRG 1604
+ + Y S VD + R+ K + D W N+ G YTVR
Sbjct: 1344 LFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAK----SKKPDKIIWNYNTTGEYTVRS 1399
Query: 1605 AYRWL--QDQQSHLPV-------VDDWNWIWKLKVPEKIRTFVWLTLQNSLQVNLHRFRC 1655
Y WL D +++P +D IW L + K++ F+W L +L
Sbjct: 1400 GY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR 1458
Query: 1656 KMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPNFTAGDHSSWIRSQARSN- 1714
M PSC RC E I H L TCP F AW SS IR+Q SN
Sbjct: 1459 GMRIDPSCPRCHRENESINHALFTCP--------FATMAW----RLSDSSLIRNQLMSND 1506
Query: 1715 ------NGVKFIVG--------------LWGVWKWRNNMI---FEDSPWSL-------EE 1744
N + F+ +W +WK RNN++ F +SP
Sbjct: 1507 FEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETH 1566
Query: 1745 AWRRVCHEHDEIVAVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGG-L 1803
W H + + + A + W+ P A +K N D + DV GG +
Sbjct: 1567 DWLNATQSHKKTPSPTRQIAENK-----IEWRNPPATYVKCNFDAGF-DVQKLEATGGWI 1620
Query: 1804 ARDPSG---NWLFGFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVVEVDCADLLQSL 1860
R+ G +W LAH N AE +ALL L+ W RGY + +E DC L+ +
Sbjct: 1621 IRNHYGTPISWGSMKLAHT--SNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 1678
Query: 1861 D 1861
+
Sbjct: 1679 N 1679
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 546 bits (1407), Expect = e-153
Identities = 377/1276 (29%), Positives = 600/1276 (46%), Gaps = 87/1276 (6%)
Query: 647 ARGFSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWR 706
+ G SGG+ + + SV + + I+ ++ + W + VY P NR +W
Sbjct: 790 SEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRHRMWS 849
Query: 707 HMTLLRRRFLLPWLLLGDFNEILFPSE-----VRGGDFLPNRAAMFASVLDTCQLVDLGA 761
+ + + LPW ++GDFNE ++ E RG + + F VL C+L DLG
Sbjct: 850 LLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQD----FRDVLQDCELHDLGF 905
Query: 762 VGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQC--GS 819
G T+ K + RLDR + D +W+ + A V L SDHCPILL
Sbjct: 906 KGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKD 965
Query: 820 PQTLAHNRPFRFLAAWADHPDFAAVVDNAWR-SGEEC----ITSKLERVREASTVFNKEV 874
P L + + W P+ V++ AW +GE+ I L +V A +++
Sbjct: 966 PHQL-RQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAK 1024
Query: 875 FGNIFR-----RKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQK 929
N+ R RK+ E R + R T M +L +EE+L Q+
Sbjct: 1025 VKNVGRELEKARKKLAELIESNADRTVIRNATDHM-----------NELLYREEMLWLQR 1073
Query: 930 ARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTG 989
+R N + DRNT +FH++ + R +KN++ +L+ + T L+ + +F +++T
Sbjct: 1074 SRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTA 1133
Query: 990 ITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKY 1049
L VT + ++ L + +DE+ A+ + +PG DGF FY++
Sbjct: 1134 DPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRN 1193
Query: 1050 WNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITK 1109
W + + V+ FQ G + E + D +VLIPK +QP +RD RPISLCNV +KV++K
Sbjct: 1194 WGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSK 1253
Query: 1110 VLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKST-AKRGMVAFKIDLEK 1168
LVNRLRP L L+ QS+F+ GR DNA LA E H M K+ A A+K+DL K
Sbjct: 1254 CLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSK 1313
Query: 1169 AYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPM 1228
AYD V W FL+ + GF +N IM VTS + + +NG L +F P RGLRQGDP+
Sbjct: 1314 AYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPL 1373
Query: 1229 SPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLL 1288
P+LF+ + LS+L++ V + P ++ + P ISHL FADD LLF +A + ++
Sbjct: 1374 LPFLFLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVV 1433
Query: 1289 ASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGR 1348
+ + +G IN +K ++ + V ++IS + + +YLGFP GR
Sbjct: 1434 KEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGR 1493
Query: 1349 IHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKIN 1408
+H+ RF L I +++ W N LS G+ L K+VI A+P Y M +F +P V +
Sbjct: 1494 MHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLT 1553
Query: 1409 QLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNK 1468
+L ++F W G H W+ +T+PK GGLG RD L N AL+ + W L+ P+
Sbjct: 1554 KLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDS 1613
Query: 1469 LWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWHDDW 1527
L RVL KY + S++ S W+ + D L G ++R+GNG + +W D W
Sbjct: 1614 LCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSW 1673
Query: 1528 SGMGNIAPAVPYVDIHDIDRRLCDLV-DNGTWNMQVL---YTSLPVDVLERLQKIKPTIV 1583
+ + + + + DL+ ++G+W++ + + +L +V+ + +
Sbjct: 1674 LPRDHSRRPITGKANCRL-KWVSDLITEDGSWDVPKIHQYFHNLDAEVILNI------CI 1726
Query: 1584 PNR--QDVWTWETNSMGIYTVRGAYRW------LQDQQSH--LPVVDDWNWIWKLKVPEK 1633
+R +D W + G+++VR AYR +++ S + W IWK KVP+K
Sbjct: 1727 SSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQK 1786
Query: 1634 IRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWL---KF 1690
++ F W N L +++ + K+ S C C ED H L C + +LW K
Sbjct: 1787 VKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDDAHALCRCIQASQLWSCMHKS 1846
Query: 1691 GAFAWPNFTAGDHSSWI---RSQARSNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAWR 1747
G+ + + W+ + F++ LW W RN +I S E + R
Sbjct: 1847 GSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNWYVRNELIHGKSAPPTETSQR 1906
Query: 1748 RVCHEHDEIVAVLGEEAGSMDCWLGSR----------------------WQPPMAGSIKL 1785
+ D + + +A D G W+ P G +KL
Sbjct: 1907 FIQSYVDLLFQI--RQAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKL 1964
Query: 1786 NVDGSYRDVDDSSGVGGLARDPSGNWLF-GFLAHRRGGNAFLAEAQALLLGLELVWARGY 1844
NVDGS+ G+G + R+ +G+ +F R N +E +A + GL+L
Sbjct: 1965 NVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTL 2024
Query: 1845 RDIVVEVDCADLLQSL 1860
I VE DCA ++Q L
Sbjct: 2025 LPIQVETDCASVVQLL 2040
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 538 bits (1385), Expect = e-151
Identities = 394/1309 (30%), Positives = 597/1309 (45%), Gaps = 113/1309 (8%)
Query: 621 METRCQFRRVSAFWNSLGFFPIHIEEARGFSGGIWVLANTSVPYNF-----RVIDTHQQV 675
+ET Q +V LGF + + G SGG+ ++ +V + R+ID+H
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSH--- 246
Query: 676 VTFEVWKDNLSWVCSAVYASPIPANREILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVR 735
VTF +N S+ S VY P + R LW+ + + WLL+GDFNEIL +E
Sbjct: 247 VTF----NNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKI 302
Query: 736 GGDFLPNRAAM-FASVLDTCQLVDLGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKVA 794
GG F +++ C + D+ + G RF+W + + + LDR + W
Sbjct: 303 GGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCC-LDRVFINSAWTAT 361
Query: 795 FPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEE 854
FP A + L+ SDH P+L+ ++ FRF D P F +V +WR+
Sbjct: 362 FPYAETEFLDFTGSDHKPVLVHFNESFP-RRSKLFRFDNRLIDIPTFKRIVQTSWRTNRN 420
Query: 855 C----ITSKLERVREASTVFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAE 910
IT ++ R+A N +R + +++ L E RRV ++ +
Sbjct: 421 SRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAM-ESTRRVDRQLI---PQ 476
Query: 911 LQREYRNILRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGT-WC 969
LQ EE+ QK+R + GD+NT YFH T R +NRV+ + + G +
Sbjct: 477 LQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFT 536
Query: 970 GDEEVLKRVVHGFFVNLFTGITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMS 1029
GD+E+ FF N+F+ SP D +++ L + E+ A+
Sbjct: 537 GDKEIGNHA-QDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQ 595
Query: 1030 MNSYTAPGADGFQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPS 1089
+ APG DG FYK W+ VG + VK+ F+ + ++ + +IPK+ P+
Sbjct: 596 IGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPT 655
Query: 1090 TVRDLRPISLCNVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHH 1149
T+ D RPI+LCNV +KVI+K LVNRL+ L ++ Q++F+PGR DN +A EV+H
Sbjct: 656 TLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHS 715
Query: 1150 MS-KSTAKRGMVAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILW 1208
+ + + +A K D+ KAYD V W FL+ T+ L+GF I IM++V S S+L
Sbjct: 716 LKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLI 775
Query: 1209 NGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHL 1268
NG P RG+RQGDP+SPYLF+LC + LS LI GD + +R+ P I+HL
Sbjct: 776 NGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHL 835
Query: 1269 FFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVA 1328
FADD L FC+A+V L ++ SG KIN+ KS V + + +
Sbjct: 836 QFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQIL 895
Query: 1329 PIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAA 1388
IP GKYLG P + GR + F ++++ ++++ +W A LS AG+ + KSV A
Sbjct: 896 EIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALA 955
Query: 1389 MPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTE 1448
MP Y M F +P+G+ +I L+ +F W G V W+++ K GGLG RD
Sbjct: 956 MPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLA 1015
Query: 1449 LANTALMGKAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLH 1508
N AL+ K W L+ PN L+ RV+ +Y + S+L + + Q S W LL L
Sbjct: 1016 KFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLK 1075
Query: 1509 TGFVFRLGNGETSLWHDDWSGMGNIAPAVPYVDIHDIDRRLCDLVDNGTWNMQVLY---- 1564
G +G+G+ G+ NI + P + + + ++ N + + Y
Sbjct: 1076 KGTRHLIGDGQNIR-----IGLDNIVDSHPPRPL-NTEETYKEMTINNLFERKGSYYFWD 1129
Query: 1565 ---TSLPVD-----VLERLQKIKPTIVPNRQDVWTWETNSMGIYTVRGAYRWL--QDQQS 1614
S VD + R+ K + D W N+ G YTVR Y WL D +
Sbjct: 1130 DSKISQFVDQSDHGFIHRIYLAK----SKKPDKIIWNYNTTGEYTVRSGY-WLLTHDPST 1184
Query: 1615 HLPV-------VDDWNWIWKLKVPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCS 1667
++P +D IW L + K++ F+W L +L M P C RC
Sbjct: 1185 NIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCH 1244
Query: 1668 APEEDILHCLRTCPHSQELWLKFGAFAWPNFTAGDHSSWIRSQARSN-------NGVKFI 1720
E I H L TCP + W W + SS IR+Q SN N + F+
Sbjct: 1245 RENESINHALFTCPFATMAW-------WLS-----DSSLIRNQLMSNDFEENISNILNFV 1292
Query: 1721 VG--------------LWGVWKWRNNMI---FEDSPWSL-------EEAWRRVCHEHDEI 1756
+W +WK RNN++ F +SP W H +
Sbjct: 1293 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1352
Query: 1757 VAVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGG-LARDPSG---NWL 1812
+ + A + W+ P A +K N D + DV GG + R+ G +W
Sbjct: 1353 PSPTRQIAENK-----IEWRNPPATYVKCNFDAGF-DVQKLEATGGWIIRNHYGTPISWG 1406
Query: 1813 FGFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVVEVDCADLLQSLD 1861
LAH N AE +ALL L+ W RGY + +E DC L+ ++
Sbjct: 1407 SMKLAHT--SNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLIN 1453
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 534 bits (1376), Expect = e-149
Identities = 385/1328 (28%), Positives = 620/1328 (45%), Gaps = 62/1328 (4%)
Query: 589 LISWNVRGALYANGKLAIRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEAR 648
+ISWN +G ++E+ + PD+ LMET+ V + LG+ IH E
Sbjct: 2 VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPE 61
Query: 649 GFSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWRHM 708
G SGG+ + + + F D + ++ +V N W S VY P+ R LW H+
Sbjct: 62 GRSGGLAIFWKSHLEIEFLYAD--KNLMDLQVSSRNKVWFISCVYGLPVTHMRPKLWEHL 119
Query: 709 TLLRRRFLLPWLLLGDFNEILFPSEVRGGDFL-PNRAAMFASVLDTCQLVDLGAVGRRFT 767
+ + W L+GDFN+I E GG P+ F +L C + +LG+ G FT
Sbjct: 120 NSIGLKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFT 179
Query: 768 WFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNR 827
W ND+ + K LDR G+ W FP+A L + SDH P+L++ + L +
Sbjct: 180 WGGNRNDQWVQCK-LDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ 238
Query: 828 PFRFLAAWADHPDFAAVVDNAWRS----GEECITSKLERVREASTVFNKEVFGNIFRRKR 883
FR+ D P V+ +W S G L R A +V+ N
Sbjct: 239 -FRYDKRLDDDPYCIEVIHRSWNSAMSQGTHSSFFSLIECRRAISVWKHSSDTN------ 291
Query: 884 HVEARLRGVQRELDRRVTSDMVLFEA--ELQREYRNILRQEELL*YQKARENRVHLGDRN 941
++R++ ++++LD + + + ++ + EEL QK+R+ + GD+N
Sbjct: 292 -AQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKN 350
Query: 942 TAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPRVTHD 1001
T +FH R KN + L E+ ++ FF NLFT L
Sbjct: 351 TGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEG 410
Query: 1002 LFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMV 1061
L ++ E L+Q V + EV +A+ S+N +APG DGF F++++W+ V + +
Sbjct: 411 LQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEI 470
Query: 1062 KEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRK 1121
F+ G + ++ + LIPK+ P + DLRPISLC+V +K+I+K+L RL+ L
Sbjct: 471 FGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPA 530
Query: 1122 LIGPMQSSFLPGRGTMDNAFLAQEVIHHM-SKSTAKRGMVAFKIDLEKAYDSVSWSFLQE 1180
++ QS+F+P R DN +A E+IH + + + +AFK D+ KAYD V W FL+
Sbjct: 531 IVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLET 590
Query: 1181 TLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERL 1240
+ GF I+ IM+ VTS S+L NG P RG+RQGDP+SP LFVLC E L
Sbjct: 591 MMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEAL 650
Query: 1241 SVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSG 1300
++ G I+ ++HL FADD LL C+A+ + L + + SG
Sbjct: 651 IHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSG 710
Query: 1301 LKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFP--LKGGRIHRNRFNFLL 1358
INL+KS K V +KD I + I GKYLG P L G + R+ F F+
Sbjct: 711 QMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSK--RDLFGFIK 768
Query: 1359 ESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSG 1418
E +Q +L W A LS G+ L KS+ A+P Y M F +P+ + K+ ++ F W+
Sbjct: 769 EKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS 828
Query: 1419 KGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHKY 1478
H ++W+++T PKD+GG G +D + N AL+ K W ++ + L+ RV +Y
Sbjct: 829 MQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY 888
Query: 1479 LSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGE-TSLWHDDWSGMGNIAPAV 1537
SNS L + S W+ +L R+ L G +GNG+ T +W D W G+ +
Sbjct: 889 FSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPL 948
Query: 1538 PYVDIHDIDRRLCDLVD--NGTWNMQVLYTSLPVDVLERLQKIKPTIVPNRQDVWTWETN 1595
++D ++ L+D + WN+ +L P +E + K +P ++D + W +
Sbjct: 949 NRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFF--KEDSFCWLHS 1006
Query: 1596 SMGIYTVRGAYRWLQDQQSH--------LPVVDD-WNWIWKLKVPEKIRTFVWLTLQNSL 1646
G+Y+V+ Y +L Q H P V+ ++ IW L KIR F+W L ++
Sbjct: 1007 HNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAI 1066
Query: 1647 QVNLHRFRCK-MAASPSCSRCSAPEEDILHCLRTCPHSQELW-LKFGAFAWPNFTAGDHS 1704
V R R + + + C C E I H L CP ++++W + + A F+ ++
Sbjct: 1067 PVE-DRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYT 1125
Query: 1705 SWIR-----SQARSNNGVKFIVG--LWGVWKWRNNMIFEDS---PWSLEEAWRRVCHEHD 1754
+ R Q + ++F+ LW +WK RN ++FE +L + HE
Sbjct: 1126 NMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWF 1185
Query: 1755 EIVAVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWLFG 1814
+ + + ++W PP+ G +K N+ ++ SG + RD G L
Sbjct: 1186 SAQTHMQNDEKHLKI---TKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVL-- 1240
Query: 1815 FLAHRRGGN----AFLAEAQALLLGLELVWARGYRDIVVEVDCADLLQSLDDEDRRRFLP 1870
L RR N + A+ ++ LE + + ++ +++Q+L L
Sbjct: 1241 -LHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPHEWPLL- 1298
Query: 1871 ILGDIRNM 1878
LGDI +
Sbjct: 1299 -LGDISEL 1305
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 527 bits (1357), Expect = e-147
Identities = 385/1348 (28%), Positives = 622/1348 (45%), Gaps = 75/1348 (5%)
Query: 592 WNVRGALYANGKLAIRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARGFS 651
WN +G + E+ R D+ L+ET+ Q +GF + I RG S
Sbjct: 368 WNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIISPRGLS 427
Query: 652 GGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWRHMTLL 711
GG+ V + + +VI ++V V N ++ S +Y PIP+ R LW + +
Sbjct: 428 GGLVVYWKKHL--SIQVISHDVRLVDLYVEYKNFNFYLSCIYGHPIPSERHHLWEKLQRV 485
Query: 712 RRRFLLPWLLLGDFNEILFPSEVRGGDFLPNRAAM-FASVLDTCQLVDLGAVGRRFTWFQ 770
PW++ GDFNEIL +E +GG + F ++++ C + DL + G ++W
Sbjct: 486 SAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVG 545
Query: 771 KANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFR 830
K + I S LDR + +W+ +FP + L SDH P+++ + FR
Sbjct: 546 KRQNETIESC-LDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAE-EVCTKRGQFR 603
Query: 831 FLAAWADHPDFAAVVDNAWRSGEEC----ITSKLERVREASTVFNKEVFGNIFRRKRHVE 886
+ DF V W G KL R+ + + N + ++
Sbjct: 604 YDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKIETLK 663
Query: 887 ARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQKARENRVHLGDRNTAYFH 946
R+ +R D + +L L+++ R EEL + K+R + LGDRNT +F+
Sbjct: 664 YRVDAAER--DHTLPHQTIL---RLRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFY 718
Query: 947 TQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPRVTHDLFPSL 1006
T +R+ +NR+ + G ++ + +V +F +LFT + + P +
Sbjct: 719 ASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKV 778
Query: 1007 SVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMVKEAFQ 1066
+ + LLQ V EVR A+ ++ + APG DGF FY W+ +G+ + MV+ F+
Sbjct: 779 TEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFE 838
Query: 1067 EGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRKLIGPM 1126
++ + + LIPK+ P + D RPISLC ++K+I+K+L+ RL+ L +I
Sbjct: 839 SDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDS 898
Query: 1127 QSSFLPGRGTMDNAFLAQEVIHHM-SKSTAKRGMVAFKIDLEKAYDSVSWSFLQETLELY 1185
Q++F+PG+ DN +A E++H + S+ + G VA K D+ KAYD V W+FL++ +
Sbjct: 899 QAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQL 958
Query: 1186 GFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQ 1245
GF + IM+ VTS +L NG P RG+RQGDP+SPYLF+ C E LS +++
Sbjct: 959 GFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLR 1018
Query: 1246 SLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINL 1305
++++K+ ISHL FADD L FC AS + LA + + ++SG KIN
Sbjct: 1019 KAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINY 1078
Query: 1306 SKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKL 1365
+KS I + + + + + + I V GKYLG P + GR F +++ ++ +
Sbjct: 1079 AKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERT 1138
Query: 1366 GSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGW 1425
W N LS AG+ + K++ A+P Y+M F +P + +IN LI +F W GK
Sbjct: 1139 EGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAF-WWGK------ 1191
Query: 1426 HLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHKYLSNSSVL 1485
++ G LG +D N AL+ K W ++ P L R+ Y N++ L
Sbjct: 1192 -----------ENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYL 1240
Query: 1486 QVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGETS-LWHDDWSGMGNIAPAVPYVDIHD 1544
+ S W + + + L G RLG+G+T+ +W D W + + P I D
Sbjct: 1241 RANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPW--LPTLPPRPARGPILD 1298
Query: 1545 IDRRLCDL--VDNGTWNMQVLYTSLPVDVLERLQKIKPTIVPN--RQDVWTWETNSMGIY 1600
D ++ DL + W+ + L E Q K + N +D + W Y
Sbjct: 1299 EDMKVADLWRENKREWDPVIFEGVLNP---EDQQLAKSLYLSNYAARDSYKWAYTRNTQY 1355
Query: 1601 TVRGAYRW------LQDQQSHLPVVDD---WNWIWKLKVPEKIRTFVWLTLQNSLQVNLH 1651
TVR Y W L +++ P+ D IW+LK+ KI+ F+W L +L
Sbjct: 1356 TVRSGY-WVATHVNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQ 1414
Query: 1652 RFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPN---FTAG-DHSSWI 1707
+ A P+C RC +E I H + TC ++Q +W + F+ N FT + + +
Sbjct: 1415 LRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVW-RSANFSGSNRLCFTDNLEENIRL 1473
Query: 1708 RSQARSNNGVKFIVGL------WGVWKWRNNMIFED---SPWSLEEAWRRVCHEHDEIV- 1757
Q + N + + GL W +WK RN +F+ PW + + + E E +
Sbjct: 1474 ILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMV 1533
Query: 1758 ---AVLGEEAGSMDCWL--GSRWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWL 1812
A+ A S D L +W P G +K N D Y D + G + RD +G L
Sbjct: 1534 NDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVL 1593
Query: 1813 F-GFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVVEVDCADLLQSLD-DEDRRRFLP 1870
G ++ +A AEA L L++VW RGY + E D +L ++ ED
Sbjct: 1594 HSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLLET 1653
Query: 1871 ILGDIRNMKDRGWRISLERVRRDCNAPA 1898
+L DIR + S+ V R+ N A
Sbjct: 1654 LLYDIRFWMTKLPFSSIGYVNRERNLAA 1681
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 527 bits (1357), Expect = e-147
Identities = 388/1340 (28%), Positives = 605/1340 (44%), Gaps = 159/1340 (11%)
Query: 606 IRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARGFSGGIWVLANTSVPYN 665
+ L + K DV L+ET + +S + LGF + + +G SGG+ +L SV +
Sbjct: 401 LSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLS 460
Query: 666 F-----RVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWRHMTLLRRRFLLPWL 720
R ID H + +N+++ S VY P + R LW H L + PW+
Sbjct: 461 NLYQDDRHIDVHISI-------NNINFYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWI 513
Query: 721 LLGDFNEILFPSEVRGGDFLPNRAAM----FASVLDTCQLVDLGAVGRRFTWFQKANDRL 776
L+GDFNEIL +E GG P R F +++ TC L D+ ++G RF+W + +
Sbjct: 514 LIGDFNEILSNNEKIGG---PQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHT 570
Query: 777 ILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWA 836
+ LDRA + E FP A ++ L SDH P+ L +T RPFRF
Sbjct: 571 VKCC-LDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTET-RKMRPFRFDKRLL 628
Query: 837 DHPDFAAVVDNAWRSGEECITSKL-ERVREASTVFNKEVFGNIFRRKRHVEARLR--GVQ 893
+ P F V W L ++VR K + K ++ +R+R +Q
Sbjct: 629 EVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAK------LKHKSNLNSRIRINQLQ 682
Query: 894 RELDRRVTSDMVLFE---AELQREYRNILRQEELL*YQKARENRVHLGDRNTAYFHTQTL 950
LD+ ++S + +QRE R EE QK+R + GDRNT +FH T
Sbjct: 683 AALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTK 742
Query: 951 IRRRKNRVHRLKLEDGT-WCGDEEVLKRVVHG--FFVNL------------FTGITPLAS 995
R NR+ +K E+G + GD+E+ VH FF + F G P+ +
Sbjct: 743 TRFSVNRLVTIKDEEGMIYRGDKEI---GVHAQEFFTKVYESNGRPVSIIDFAGFKPIVT 799
Query: 996 PRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGD 1055
++ DL LS E+ +A+ + APG DG FYK W VG
Sbjct: 800 EQINDDLTKDLS------------DLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGP 847
Query: 1056 SLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRL 1115
+ VK F+ + +++ + +IPK+ P T+ D RPI+LCNV +K+I+K LV RL
Sbjct: 848 DVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERL 907
Query: 1116 RPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHM-SKSTAKRGMVAFKIDLEKAYDSVS 1174
+ L ++ Q++F+PGR DN +A E++H + ++ + +A K D+ KAYD V
Sbjct: 908 KGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVE 967
Query: 1175 WSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFV 1234
W+FL+ T+ L+GF E I IM +V S S+L NG +P RG+RQGDP+SPYLF+
Sbjct: 968 WNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFI 1027
Query: 1235 LCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQL 1294
LC + L+ LI++ V +GD + IR+ P ++HL FADD L FC+++V L +
Sbjct: 1028 LCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDV 1087
Query: 1295 FCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRF 1354
+ SG KIN+SKS V ++ + + I GKYLG P + GR R+ F
Sbjct: 1088 YEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMF 1147
Query: 1355 NFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSF 1414
N+++E ++++ SW A LS AG+ + KSV +MP Y M F +P + +I L+ +F
Sbjct: 1148 NYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNF 1207
Query: 1415 IWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVL 1474
W + W+++ K GGLG RD N AL+ K +W +++ PN L+ R++
Sbjct: 1208 WWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIM 1267
Query: 1475 SHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGETSLWHDDWSGMGNIA 1534
+Y S+L + + S W +L D + G F +G+G+T +
Sbjct: 1268 KARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTGSYR---------- 1317
Query: 1535 PAVPYVDIHDIDRRLCDLVDNGTWNMQVLYTSLPVDVLERLQKIKPTIVPNRQDVWTWET 1594
Y + H I + + D+ + M L +I QD W
Sbjct: 1318 ----YWNAHLISQLVSP--DDHRFVMN-----------HHLSRIV------HQDKLVWNY 1354
Query: 1595 NSMGIYTVRGAYRWLQDQQSHLPVVDDWNWIWKLKVPEKIRTFVWLTLQNSLQVNLHRFR 1654
+S G YT +WKL + KI+ +W T+ +L
Sbjct: 1355 SSSGDYT-----------------------LWKLPIIPKIKYMLWRTISKALPTRSRLLT 1391
Query: 1655 CKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAW-PNFTAGDH---------S 1704
M P C RC EE I H L TCP++ +W F W P T +
Sbjct: 1392 RGMDIDPHCPRCPTEEETINHVLFTCPYAASIW-GLSNFPWLPGHTFSQDTEENISFLIN 1450
Query: 1705 SWIRSQARSNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAWRRVCHEHDEIVAVLGEEA 1764
S+ + + + +W +WK RNN++F S + E +E + +
Sbjct: 1451 SFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQSVNRRE 1510
Query: 1765 GSMDCWLGS-----RWQPPMAGSIKLNVDGSYRDVDDSSGVGGLARDPSGNWLFGFLAHR 1819
+ S RW+ P+ +K N D +G G +G W+
Sbjct: 1511 DASVLTRSSHRANVRWKKPVFPLVKCNFD---------AGFTGNNTQSTGGWI------- 1554
Query: 1820 RGGNAFLAEAQALLLGLELVWARGYRDIVVEVDCADLLQSLDDE-DRRRFLPILGDIRNM 1878
+ E +ALL+ ++ W RGY+ + E DC L+++++ R +L D+
Sbjct: 1555 ------IPETKALLIAMQQAWVRGYKCVQFEGDCEILIKAINGAISRCEITSLLRDVDFW 1608
Query: 1879 KDRGWRISLERVRRDCNAPA 1898
R + R CN A
Sbjct: 1609 ASRFSTVVFTFTNRLCNNTA 1628
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 526 bits (1356), Expect = e-147
Identities = 379/1302 (29%), Positives = 608/1302 (46%), Gaps = 62/1302 (4%)
Query: 615 PDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARGFSGGIWVLANTSVPYNFRVIDTHQQ 674
PD+ LMET+ V + LG+ IH E G SGG+ + + + F D +
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYAD--KN 64
Query: 675 VVTFEVWKDNLSWVCSAVYASPIPANREILWRHMTLLRRRFLLPWLLLGDFNEILFPSEV 734
++ +V N W S VY P+ R LW H+ + + W L+GDFN+I E
Sbjct: 65 LMDLQVSSRNKVWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEK 124
Query: 735 RGGDFL-PNRAAMFASVLDTCQLVDLGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKV 793
GG P+ F +L C + +LG+ G FTW ND+ + K LDR G+ W
Sbjct: 125 LGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQWVQCK-LDRCFGNPAWFS 183
Query: 794 AFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWADHPDFAAVVDNAWRS-- 851
FP+A L + SDH P+L++ + L + FR+ D P V+ +W S
Sbjct: 184 IFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ-FRYDKRLDDDPYCIEVIHRSWNSAM 242
Query: 852 --GEECITSKLERVREASTVFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEA 909
G L R A +V+ N ++R++ ++++LD + + +
Sbjct: 243 SQGTHSSFFSLIECRRAISVWKHSSDTN-------AQSRIKRLRKDLDAEKSIQIPCWPR 295
Query: 910 --ELQREYRNILRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGT 967
++ + EEL QK+R+ + GD+NT +FH R KN + L E+
Sbjct: 296 IEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQ 355
Query: 968 WCGDEEVLKRVVHGFFVNLFTGITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHAL 1027
++ FF NLFT L L ++ E L+Q V + EV +A+
Sbjct: 356 EFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAV 415
Query: 1028 MSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQ 1087
S+N +APG DGF F++++W+ V + + F+ G + ++ + LIPK+
Sbjct: 416 FSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITS 475
Query: 1088 PSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVI 1147
P + DLRPISLC+V +K+I+K+L RL+ L ++ QS+F+P R DN +A E+I
Sbjct: 476 PQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMI 535
Query: 1148 HHM-SKSTAKRGMVAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSI 1206
H + + + +AFK D+ KAYD V W FL+ + GF I+ IM+ VTS S+
Sbjct: 536 HSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSV 595
Query: 1207 LWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPIS 1266
L NG P RG+RQGDP+SP LFVLC E L ++ G I+ ++
Sbjct: 596 LINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVN 655
Query: 1267 HLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISV 1326
HL FADD LL C+A+ + L + + SG INL+KS K V +KD I
Sbjct: 656 HLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKS 715
Query: 1327 VAPIPFVHDLGKYLGFP--LKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKS 1384
+ I GKYLG P L G + R+ F F+ E +Q +L W A LS G+ L KS
Sbjct: 716 RSGISLEGGTGKYLGLPECLSGSK--RDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKS 773
Query: 1385 VIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGV 1444
+ A+P Y M F +P+ + K+ ++ F W+ H ++W+++T PKD+GG G
Sbjct: 774 IALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGF 833
Query: 1445 RDTELANTALMGKAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKAR 1504
+D + N AL+ K W ++ + L+ RV +Y SNS L + S W+ +L R
Sbjct: 834 KDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGR 893
Query: 1505 DRLHTGFVFRLGNGE-TSLWHDDWSGMGNIAPAVPYVDIHDIDRRLCDLVD--NGTWNMQ 1561
+ L G +GNG+ T +W D W G+ + ++D ++ L+D + WN+
Sbjct: 894 ELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLN 953
Query: 1562 VLYTSLPVDVLERLQKIKPTIVPNRQDVWTWETNSMGIYTVRGAYRWLQDQQSH------ 1615
+L P +E + K +P ++D + W + G+Y+V+ Y +L Q H
Sbjct: 954 MLRDLFPWKDVEIILKQRPLFF--KEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEA 1011
Query: 1616 --LPVVDD-WNWIWKLKVPEKIRTFVWLTLQNSLQVNLHRFRCK-MAASPSCSRCSAPEE 1671
P V+ ++ IW L KIR F+W L ++ V R R + + + C C E
Sbjct: 1012 KVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVE-DRLRTRGIRSDDGCLMCDTENE 1070
Query: 1672 DILHCLRTCPHSQELW-LKFGAFAWPNFTAGDHSSWIR-----SQARSNNGVKFIVG--L 1723
I H L CP ++++W + + A F+ +++ R Q + ++F+ L
Sbjct: 1071 TINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWIL 1130
Query: 1724 WGVWKWRNNMIFEDS---PWSLEEAWRRVCHEHDEIVAVLGEEAGSMDCWLGSRWQPPMA 1780
W +WK RN ++FE +L + HE + + + ++W PP+
Sbjct: 1131 WFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKI---TKWCPPLP 1187
Query: 1781 GSIKLNVDGSYRDVDDSSGVGGLARDPSGNWLFGFLAHRRGGN----AFLAEAQALLLGL 1836
G +K N+ ++ SG + RD G L L RR N + A+ ++ L
Sbjct: 1188 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVL---LHSRRSFNEVHSPYSAKIRSWEWAL 1244
Query: 1837 ELVWARGYRDIVVEVDCADLLQSLDDEDRRRFLPILGDIRNM 1878
E + + ++ +++Q+L L LGDI +
Sbjct: 1245 ESMTHHHFDRVIFASSTHEIIQALHKPHEWPLL--LGDISEL 1284
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 526 bits (1356), Expect = e-147
Identities = 361/1189 (30%), Positives = 563/1189 (46%), Gaps = 115/1189 (9%)
Query: 590 ISWNVRGALYANGKLAIRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARG 649
+SWN RG A + LV+ L ETR ++ N LG + G
Sbjct: 437 LSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDG 496
Query: 650 FSGGIWVLANTSVPY-----NFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREIL 704
SGG+ + + SV N R ID + + ++ W + VY P NR +
Sbjct: 497 MSGGLALFWHESVHVEILNKNERFIDAY-----IRLSPNDPLWHATFVYGEPRVENRHKM 551
Query: 705 WRHMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDFLPNRAAM---FASVLDTCQLVDLGA 761
W + +++ L WL++GDFNE L+ E P A F VLDTC+L DLG
Sbjct: 552 WSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRK--PRSDAQMQAFRDVLDTCELHDLGI 609
Query: 762 VGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQ 821
G T+ + + RLDRAL D EW+ F V L S+HCPI+L+
Sbjct: 610 SGLPHTYDNRRGGWNNVKVRLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKL---- 665
Query: 822 TLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEECITSKLERVREASTVFNKEVFGNIFRR 881
+V D +W +K+ + NI R
Sbjct: 666 -------------------HGSVPDQSW---------------------SKKKYKNIGRE 685
Query: 882 KRHVEARLRGV-QRELDR---RVTSDMVLFEAELQREYRNILRQEELL*YQKARENRVHL 937
+L + + D+ R TSD + +L +EE+L Q++R N +
Sbjct: 686 LEKTRKKLSNLLEAGTDKAAIRQTSDYM----------NELLYREEMLWLQRSRVNWLKE 735
Query: 938 GDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPR 997
GDRNT +FH + R +KN++ +L+ GT+ + V++++ +F ++FT L
Sbjct: 736 GDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTADPNLDHSP 795
Query: 998 VTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSL 1057
VT + P ++ E + L +DE+ +AL + APG DGF FY++ W + + +
Sbjct: 796 VTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNWGCIKNDI 855
Query: 1058 WHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRP 1117
VKE F G + E + D +VLIPK++QP +RD RPISLCNV +KV++K LVNRLRP
Sbjct: 856 VRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRP 915
Query: 1118 FLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKSTAKRGMV-AFKIDLEKAYDSVSWS 1176
FL +LI QS+F+P R DNA LA E H + ++ R A+K+DL KAYD V W
Sbjct: 916 FLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWR 975
Query: 1177 FLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLC 1236
FL++++ +GF ++ +M+ +++ +G P+LF+
Sbjct: 976 FLEQSMYKWGFSHCWVSWVMTCISTV-------------------CDKGTRCDPFLFLFV 1016
Query: 1237 MERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFC 1296
+ LS+L++ V++G PIR+ P ISHL FADD LLF +A ++Q + +
Sbjct: 1017 ADGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYA 1076
Query: 1297 DSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNF 1356
S+G IN +K + + +D+I+ I KYLG P GGR+H+ RF
Sbjct: 1077 TSTGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQS 1136
Query: 1357 LLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIW 1416
L E I +K+ W N LS G+ L K+VI A+P Y M +F +P V + L R+F W
Sbjct: 1137 LRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWW 1196
Query: 1417 SGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSH 1476
+ G H W+ +T+ K GGLG +D L N AL+ + W L+ P+ L RVL
Sbjct: 1197 GAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKA 1256
Query: 1477 KYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWHDDWSGMG-NIA 1534
KY N S++ S W+ + + + G ++R+GNG + +W D W +
Sbjct: 1257 KYYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRR 1316
Query: 1535 PAVPYVDIHDIDRRLCDL-VDNGTWNM-QVLYTSLPVDVLERLQKIKPTIVPNRQDVWTW 1592
P P + + + DL +DNG W+ ++ LPVDV E + K++ T + +D W
Sbjct: 1317 PITPKNNCR--IKWVADLMLDNGMWDANKINQIFLPVDV-EIILKLR-TSSRDEEDFIAW 1372
Query: 1593 ETNSMGIYTVRGAYR----WLQDQ----QSHLPVVDDWNWIWKLKVPEKIRTFVWLTLQN 1644
+ +G ++VR AYR W +++ S + + W +WK VP K++ F W N
Sbjct: 1373 HPDKLGNFSVRTAYRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSN 1432
Query: 1645 SLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGAFAWPNFTAGDH- 1703
L ++ + + S +C C +ED +H L CP ++ LWL + DH
Sbjct: 1433 CLPTWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHL 1492
Query: 1704 --SSWIRSQAR---SNNGVKFIVGLWGVWKWRNNMIFEDSPWSLEEAWR 1747
SW+ ++ + F++ LW +W N +I S+E + R
Sbjct: 1493 LGPSWLFNRLALLPDHEQPMFLMVLWRIWFVHNEIIHGKPSPSIEASQR 1541
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 525 bits (1352), Expect = e-147
Identities = 371/1275 (29%), Positives = 603/1275 (47%), Gaps = 78/1275 (6%)
Query: 589 LISWNVRGALYANGKLAIR--ELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEE 646
L+SWN +G ++ R E+ S P+V LMET+ V LG+ +
Sbjct: 3 LVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGYERVFTVN 62
Query: 647 ARGFSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWR 706
G SGG+ + V + D + ++ F++ + + S VY +P +++ ++W
Sbjct: 63 PIGLSGGLALFWKKGVDIVIKYAD--KNLIDFQIQFGSHEFYVSCVYGNPAFSDKHLVWE 120
Query: 707 HMTLLRRRFLLPWLLLGDFNEILFPSEVRGG------DFLPNRAAMFASVLDTCQLVDLG 760
+T + PW +LGDFN IL E RGG FLP F +LD+C +++L
Sbjct: 121 KITRIGINRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLP-----FTDMLDSCDMLELP 175
Query: 761 AVGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSP 820
++G FTW K N+ I S RLDR G+ W FP + + L++ SDH P+L++
Sbjct: 176 SIGNPFTWGGKTNEMWIQS-RLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRLTKT 234
Query: 821 QTLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEE----CITSKLERVREASTVFNKEVFG 876
+ + FRF + P+ + AW + + KL+ R A + + KE
Sbjct: 235 KE-EYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLLVLDKLKHCRSALSRWKKE--N 291
Query: 877 NIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQKARENRVH 936
NI R +AR + +D+V L+ + EE+ QK+R +H
Sbjct: 292 NINSSTRITQARAALELEQSSGFPRADLVF---SLKNDLCKANHDEEVFWSQKSRAKWMH 348
Query: 937 LGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASP 996
GD+NT++FH R K + +L +G + DE + +F +LF P +
Sbjct: 349 SGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFV 408
Query: 997 RVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDS 1056
+ D P ++ + L+ V K+E+R A+ ++ S +APG DGF FF++KYW+ +
Sbjct: 409 DLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGFFFQKYWSIICLQ 468
Query: 1057 LWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLR 1116
+ ++ F G ++ + L+PK +P + DLRPISLC+V +K+I+K++V RL+
Sbjct: 469 VTKEIQNFFLLGYFPKSWNFTHLCLLPKKKKPDKMTDLRPISLCSVLYKIISKIMVRRLQ 528
Query: 1117 PFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHM-SKSTAKRGMVAFKIDLEKAYDSVSW 1175
PFL L+ P QS+F+ R DN +A EV+H + + + +G +A K ++ KA+D V W
Sbjct: 529 PFLPDLVSPNQSAFVAERLIFDNILIAHEVVHGLRTHKSVSKGFIAIKSNMSKAFDRVEW 588
Query: 1176 SFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVL 1235
++++ L+ GF + + IM ++S S+L N P RGLRQGDP+SP+LFVL
Sbjct: 589 NYVRALLDALGFHQKWVGWIMFMISSVSYSVLINDKAFGNIVPSRGLRQGDPLSPFLFVL 648
Query: 1236 CMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLF 1295
C E L+ L+ +G IR S+NGP I HL FADD L C+A +V ++ S +++
Sbjct: 649 CSEGLTHLMNRAERQGLLSGIRFSENGPAIHHLLFADDSLFMCKAVKEEVTVIKSIFKVY 708
Query: 1296 CDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFP--LKGGRIHRNR 1353
D +G +IN KS + V E K I I YLG P G ++
Sbjct: 709 GDVTGQRINYDKSSITLGALVDEDCKVWIQAELGITNEGGASTYLGLPECFSGSKV--QL 766
Query: 1354 FNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRS 1413
+++ + ++ +L W A LS+ G+ L K+ A+ Y M F + + + +
Sbjct: 767 LDYIKDRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSD 826
Query: 1414 FIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRV 1473
F W+ H V+ EK+ K+ GGLG RD E N AL+ K W L+ PN L+ R
Sbjct: 827 FWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARF 886
Query: 1474 LSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNG-ETSLWHDDWSGMGN 1532
+Y L + K S W+ +L RD L GF ++GNG TS+W D W + +
Sbjct: 887 FKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPW--IYD 944
Query: 1533 IAPAVPYVDIH---DIDRRLCDLVD-----NGTWNMQVLYTSLPVDVLERLQKIKPTIVP 1584
P +P + H ++D R+ DL++ ++ L+ ++++ +K V
Sbjct: 945 NDPRLP-LQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEII-----VKRNPVV 998
Query: 1585 NRQDVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDD----------WNWIWKLKVPEKI 1634
+ D W W + G Y+V+ Y WL Q + ++ + IW KI
Sbjct: 999 SMDDFWVWLHSKSGEYSVKSGY-WLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKI 1057
Query: 1635 RTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELWLKFGA-- 1692
+ F+W L ++L V R M P C C E I H L TC ++++W G
Sbjct: 1058 KLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPT 1117
Query: 1693 --FAWPN---FTAGDHSSWIRSQARSNNGVK--FIVGLWGVWKWRNNMIFEDSPWSLEEA 1745
F + N F + ++ + +K + LW +WK R+ + FE + +S ++
Sbjct: 1118 SQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKS 1177
Query: 1746 WRRVCHEHDE------IVAVL--GEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDS 1797
++ + E +VA + GE S C S W+PP G +K N+ G +
Sbjct: 1178 IEKIRDDVQEWFLAQALVASVDAGETVCSAPC--PSSWEPPPLGWVKCNISGVWSGKKRV 1235
Query: 1798 SGVGGLARDPSGNWL 1812
G + RD G L
Sbjct: 1236 CGGAWVLRDDHGKVL 1250
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 509 bits (1310), Expect = e-142
Identities = 361/1222 (29%), Positives = 583/1222 (47%), Gaps = 83/1222 (6%)
Query: 681 WKDNLSWVCSAVYASP-IPANREILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDF 739
WK+N+ + A+P NR + W ++ L + WLL GDFN+IL SE +GG
Sbjct: 38 WKENVE--VEILEAAPNFIDNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPL 95
Query: 740 LPNRAAM-FASVLDTCQLVDLGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDA 798
+ F S + L D+ G +W I S RLDRALG+ W FP +
Sbjct: 96 RWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFIKS-RLDRALGNCSWSELFPMS 154
Query: 799 VVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWADHPDFAAVVDNAWR-SGEECIT 857
+ L SDH P++ G+P L ++PFRF + + A+V W + ++ +
Sbjct: 155 KCEYLRFEGSDHRPLVTYFGAPP-LKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVL 213
Query: 858 SKLERVREASTVFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMV--LFEAELQREY 915
K+ R R++ + KE N + ++ Q+ L+ +++D+ + +E
Sbjct: 214 YKISRCRQSIIKWTKEQNSNSAKA-------IKKAQQALESALSADIPDPSLIGSITQEL 266
Query: 916 RNILRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVL 975
RQEEL Q +R ++ GDRN YFH T RR N + ++ G +EE +
Sbjct: 267 EAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQI 326
Query: 976 KRVVHGFFVNLFTGITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTA 1035
+ +F N+FT V L P +S L++ E++ AL S+++ A
Sbjct: 327 ASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKA 386
Query: 1036 PGADGFQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLR 1095
PG DGF F+ YW+ + + ++ F + ++ L + V LIPK+ P V D R
Sbjct: 387 PGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYR 446
Query: 1096 PISLCNVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMSKSTA 1155
PI+LCNV +K++ K+L RL+P+L +LI QS+F+PGR DN + E++H + S A
Sbjct: 447 PIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGA 506
Query: 1156 KRGM-VAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLP 1214
K+ +A K D+ KAYD + W+FLQE L GF + I +M V + S L NG
Sbjct: 507 KKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQG 566
Query: 1215 AFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDV 1274
+ P RGLRQGDP+SPYLF+LC E LS L + +KG IR+++ P ++HL FADD
Sbjct: 567 SVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDT 626
Query: 1275 LLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVH 1334
+ FC+ + L++ ++ + +SG INL+KS S + +K + + I
Sbjct: 627 MFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEG 686
Query: 1335 DLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTM 1394
+GKYLG P GR R+ F+ +++ I+++ SW LS AG+ L K+V+++MP+Y M
Sbjct: 687 GIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAM 746
Query: 1395 QVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTAL 1454
F +P + +I ++ F W K V+W+K+T P + GGLG R+ E
Sbjct: 747 MCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE------ 800
Query: 1455 MGKAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQ-DSQVWKGLLKARDRLHTGFVF 1513
K W ++ +P+ L RVL KY + SS + A P S W+G+L RD L G +
Sbjct: 801 -AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGW 859
Query: 1514 RLGNGET-SLWHDDWSGMGNIAPAVPYVDI-----HDIDRRLCDLV--DNGTWNMQVLYT 1565
+G G++ ++W + W ++P+ P I + D + DL+ D +WN++ +
Sbjct: 860 SIGQGDSINVWTEAW-----LSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRK 914
Query: 1566 SLPVDVLERLQKIKPTIVPNRQDVWTWETNSMGIYTVRGAYRWLQDQQSHLPVVDDWNW- 1624
LP ++++KI +P QD W G YT + Y L S D+NW
Sbjct: 915 HLP-QYEDQIRKITINALP-LQDSLVWLPVKSGEYTTKTGYA-LAKLNSFPASQLDFNWQ 971
Query: 1625 --IWKLKVPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPH 1682
IWK+ K++ F+W ++ +L V R + A +C RC E LH + CP+
Sbjct: 972 KNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESS-LHLMLLCPY 1030
Query: 1683 SQELWLKFGAFAWPNFTAGDHSSWIRSQARS---------NNGVKFIVGLWGVWKWRNNM 1733
++++W P+ + + A+ + + LW +WK RN +
Sbjct: 1031 AKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRL 1090
Query: 1734 IFEDSPWSLEEAWRRVCHEHDEIVAVLGEEAGSMDCWLGSRWQPPMAG----SIKLNVDG 1789
IF++ C E ++ + + M+ L P++ + L V
Sbjct: 1091 IFDN----------HSCSEEGLVLKAILDARAWMEAQLLIHHPSPISDYPSPTPNLKVTS 1140
Query: 1790 SYRD----VDDSSGVGGLARDP------SGNWLFGFLAHRRGGNAFLAEAQALLLGLELV 1839
+ D G+G +DP F+ G+A +AE A+ L L
Sbjct: 1141 CFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFV-----GSALMAETLAVHLALVDA 1195
Query: 1840 WARGYRDIVVEVDCADLLQSLD 1861
+ G R + V DC +L+ L+
Sbjct: 1196 LSTGVRQLNVFSDCKELISLLN 1217
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 482 bits (1240), Expect = e-134
Identities = 338/1130 (29%), Positives = 527/1130 (45%), Gaps = 56/1130 (4%)
Query: 808 SDHCPILLQCGSPQTLAHNRP-----FRFLAAWADHPDFAAVVDNAWR--SG--EECITS 858
SDH P++ T+A P FRF W + W SG E
Sbjct: 4 SDHSPVIA------TIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVE 57
Query: 859 KLERVREASTVFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNI 918
KL R A + + K + + ++A L QR+ D R ++ L+ YR+
Sbjct: 58 KLTNCRRAISKWRKSLIPFGRQTIEDLKAELDVAQRD-DDRSREEITELTLRLKEAYRD- 115
Query: 919 LRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRV 978
EE YQK+R + LGD N+ +FH T RR +NR+ L E+G W +++ ++ +
Sbjct: 116 ---EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNI 172
Query: 979 VHGFFVNLFTGITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGA 1038
+F NLFT P ++ ++ LL + EVR AL ++ APG
Sbjct: 173 AVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGP 232
Query: 1039 DGFQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPIS 1098
DG F++K W + L +V QEG ++ L + LIPK ++P+ + +LRPIS
Sbjct: 233 DGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPIS 292
Query: 1099 LCNVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHM-SKSTAKR 1157
LCNV +KVI+K+L RL+ L LI QS+F+ GR DN +AQE+ H + + S+ K
Sbjct: 293 LCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKD 352
Query: 1158 GMVAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFK 1217
+A K D+ KAYD V W+F++ L GF E I+ IM +T+ Q +L NG
Sbjct: 353 KFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLII 412
Query: 1218 PGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLF 1277
P RGLRQGDP+SPYLF+LC E L I+ + I+++ P +SHL FADD L F
Sbjct: 413 PERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFF 472
Query: 1278 CEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLG 1337
C+A+ Q ++ ++ + SG +IN SKS V + +K I ++ I + +G
Sbjct: 473 CKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMG 532
Query: 1338 KYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVF 1397
YLG P G F+F+ + +Q ++ W A LS G+ + KSV A +P Y M F
Sbjct: 533 SYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCF 592
Query: 1398 NMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGK 1457
+P+ +T K+ + F WS G G H + W+K+ K GGLG R+ + N+AL+ K
Sbjct: 593 RLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAK 652
Query: 1458 AIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGN 1517
+W L+ P+ L+ +V +Y S+ L S W+ ++ AR ++ G + R+G+
Sbjct: 653 QLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGS 712
Query: 1518 GET-SLWHDDWSGMGNIAPAVPYVDIHDIDRRLCDLVDNGT--WNMQVLYTSL-PVDVLE 1573
G + S+W+D W PA I D ++ L+D+ + WN+ +L P DV
Sbjct: 713 GASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDV-- 770
Query: 1574 RLQKIKPTIVPNRQDVWTWETNSMGIYTVRGAYRW--LQDQQSHLPVVDDWN----WIWK 1627
L P PN +D W G YTV+ Y L + + D +IWK
Sbjct: 771 PLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWK 830
Query: 1628 LKVPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELW 1687
++ P K+R F+W L + V+ + + + C C A EE I H L C ++++W
Sbjct: 831 VQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
Query: 1688 LKFGAFAWPN-------FTAGDHSSWIRSQARSNNGVKFIVGLWGVWKWRNNMIFE---- 1736
P FT DH W + +I+ W +WK RN +FE
Sbjct: 891 ALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWII--WYIWKARNEKVFENVDK 948
Query: 1737 DSPWSLEEAWRRVCHEHDEIVAVLGEEAGSMDCWLGSR------WQPPMAGSIKLNVDGS 1790
D L A + + V + E GS+ + SR Q + +DGS
Sbjct: 949 DPMEILLLAVKEAQSWQEAQVELHSERHGSLS--IDSRIRVRDVSQDTTFSGFRCFIDGS 1006
Query: 1791 YRDVDDSSGVGGLARDPSG-NWLFGFLAHRRGGNAFLAEAQALLLGLELVWARGYRDIVV 1849
++ D SG G G + G RR + E +ALL ++ + +++
Sbjct: 1007 WKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMKCMIGADNQNVAF 1066
Query: 1850 EVDCADLLQSLDD-EDRRRFLPILGDIRNMKDRGWRISLERVRRDCNAPA 1898
DC+DL++ + + F L ++++ ++ SL + R N A
Sbjct: 1067 FTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNFSLSLISRSANVKA 1116
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 480 bits (1235), Expect = e-133
Identities = 364/1240 (29%), Positives = 579/1240 (46%), Gaps = 95/1240 (7%)
Query: 637 LGFFPIHIEEARGFSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASP 696
L + ++ E G GG+ +L +SV + + +D + ++ +V +++ S VY P
Sbjct: 14 LEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVD--KNLMDAQVQFGAVNFCVSCVYGDP 71
Query: 697 IPANREILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDFLPNRAAM----FASVLD 752
+ R W ++ + W + GDFN+IL E GG P R+ + F ++
Sbjct: 72 DRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGG---PRRSDLDCKAFNEMIK 128
Query: 753 TCQLVDLGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCP 812
C LV++ A G FTW + D I RLDRA G+ EW FP + L+ SDH P
Sbjct: 129 GCDLVEMPAHGNGFTWAGRRGDHWIQC-RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRP 187
Query: 813 ILLQCGSPQTLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEE----CITSKLERVREAST 868
+L++ S Q ++ FRF + D + W G+ + +L R++ +
Sbjct: 188 VLIKLMSSQD-SYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLS 246
Query: 869 VFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQ 928
+ K+ N + +EA L E ++ + + + L+++ R+EE Q
Sbjct: 247 SWKKQNNLNSLDKINQLEAAL-----EKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQ 301
Query: 929 KARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFT 988
K+R+ + G+RN+ YFH R++ R+ +LK +G E V +F NLF
Sbjct: 302 KSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFK 361
Query: 989 GITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKK 1048
P L P +S L+ V E++ A+ S+ +APG DG F++
Sbjct: 362 SSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQH 421
Query: 1049 YWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVIT 1108
YW+ VG+ + VK+ F +G + + LIPK P+ + DLRPISLC+V +K+I+
Sbjct: 422 YWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIIS 481
Query: 1109 KVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMS-KSTAKRGMVAFKIDLE 1167
K++ RL+P+L +++ QS+F+ R DN +A E++H + +A K D+
Sbjct: 482 KIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMS 541
Query: 1168 KAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDP 1227
KAYD V WS+L+ L GF +N IM V+S S+L N C RGLRQGDP
Sbjct: 542 KAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDP 601
Query: 1228 MSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNL 1287
+SP+LFVLC E L+ L+ +G + I+ S+NGP + HL FADD L C+AS Q +
Sbjct: 602 LSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLV 661
Query: 1288 LASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFP--LK 1345
L ++++ +++G INL+KS + V E +K +I I G YLG P
Sbjct: 662 LQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFS 721
Query: 1346 GGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTC 1405
G ++ + ++L + ++ KL W LS G+ L KSV AMP + M F +P
Sbjct: 722 GSKV--DMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCE 779
Query: 1406 KINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHK 1465
+ + SF W H +WE++ PKD GGLG RD + N AL+ K W L+H
Sbjct: 780 NLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHF 839
Query: 1466 PNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWH 1524
P+ L R+L +Y + L + S W+ +L R+ L G R+G+G + +W
Sbjct: 840 PDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWI 899
Query: 1525 DDWSGMGNIAPAVPYVDIHDIDRRLCDLVD--NGTWNMQVLY-TSLPVDVLERLQKIKPT 1581
D W I+D+ ++ L++ G W+ +VL+ LP D+L R++ IKP
Sbjct: 900 DPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDIL-RIKAIKPV 958
Query: 1582 IVPNRQDVWTWETNSMGIYTVRGAYRWL------QDQQSHLPVVDDW----NWIWKLKVP 1631
I ++ D + W+ N G ++V+ AY WL Q+ +S + + +W L+
Sbjct: 959 I--SQADFFVWKLNKSGDFSVKSAY-WLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTD 1015
Query: 1632 EKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAPEEDILHCLRTCPHSQELW-LKF 1690
KI+ F+W C E H L CP S+++W L
Sbjct: 1016 PKIKIFLWKV------------------------CGELGESTNHTLFLCPLSRQIWALSD 1051
Query: 1691 GAFAWPNFTAGDHSSWIRSQARSNNGVKFIVG--------LWGVWKWRNNMIFEDSPWSL 1742
F F+ G S I + + ++ + LW +WK RN+ IFE +
Sbjct: 1052 YPFPPDGFSNGSIYSNINHLLENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGISYPA 1111
Query: 1743 EEAWRRVCHEHDEIVAVLGEEAGSMDCWLGSRWQPPMAGSIKLNVDGSYRDVDDSSGVGG 1802
+ V D++V EA +D GS PP++ + + GS +
Sbjct: 1112 TDT---VIKIRDDVVEWF--EAQCLD-GEGSALNPPLSNGV--HFVGSVSE--------N 1155
Query: 1803 LARDPSGNWLFGFLAH-RRGGNAFLAEAQALLLGLELVWA 1841
L P NW L H RR ++A ALL L+WA
Sbjct: 1156 LWIKPPANWDGIVLLHSRRSFAPISSKADALLRC--LLWA 1193
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 468 bits (1203), Expect = e-129
Identities = 306/946 (32%), Positives = 471/946 (49%), Gaps = 64/946 (6%)
Query: 606 IRELVRSKKPDVFILMETRCQFRRVSAFWNSLGFFPIHIEEARGFSGGIWVLANTSVPYN 665
+ L + K DV L+ET + +S + LGF + + +G SGG+ +L SV +
Sbjct: 381 LSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLS 440
Query: 666 F-----RVIDTHQQVVTFEVWKDNLSWVCSAVYASPIPANREILWRHMTLLRRRFLLPWL 720
R ID H + +N+++ S VY P + R LW H L + PW+
Sbjct: 441 NLYQDDRHIDVHISI-------NNINFYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWI 493
Query: 721 LLGDFNEILFPSEVRGGDFLPNRAAM----FASVLDTCQLVDLGAVGRRFTWFQKANDRL 776
L+GDFNEIL +E GG P R F +++ TC L D+ ++G RF+W + +
Sbjct: 494 LIGDFNEILSNNEKIGG---PQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHT 550
Query: 777 ILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWA 836
+ LDRA + E FP A ++ L SDH P+ L +T RPFRF
Sbjct: 551 VKCC-LDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTET-RKMRPFRFDKRLL 608
Query: 837 DHPDFAAVVDNAWRSGEECITSKL-ERVREASTVFNKEVFGNIFRRKRHVEARLR--GVQ 893
+ P F V W L ++VR K + K ++ +R+R +Q
Sbjct: 609 EVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAK------LKHKSNLNSRIRINQLQ 662
Query: 894 RELDRRVTSDMVLFE---AELQREYRNILRQEELL*YQKARENRVHLGDRNTAYFHTQTL 950
LD+ ++S + +QRE R EE QK+R + GDRNT +FH T
Sbjct: 663 AALDKAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTK 722
Query: 951 IRRRKNRVHRLKLEDGT-WCGDEEVLKRVVHG--FFVNL------------FTGITPLAS 995
R NR+ +K E+G + GD+E+ VH FF + F G P+ +
Sbjct: 723 TRFSVNRLVTIKDEEGMIYRGDKEI---GVHAQEFFTKVYESNGRPVSIIDFAGFKPIVT 779
Query: 996 PRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGD 1055
++ DL LS E+ +A+ + APG DG FYK W VG
Sbjct: 780 EQINDDLTKDLS------------DLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGP 827
Query: 1056 SLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRL 1115
+ VK F+ + +++ + +IPK+ P T+ D RPI+LCNV +K+I+K LV RL
Sbjct: 828 DVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERL 887
Query: 1116 RPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHM-SKSTAKRGMVAFKIDLEKAYDSVS 1174
+ L ++ Q++F+PGR DN +A E++H + ++ + +A K D+ KAYD V
Sbjct: 888 KGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVE 947
Query: 1175 WSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFV 1234
W+FL+ T+ L+GF E I IM +V S S+L NG +P RG+RQGDP+SPYLF+
Sbjct: 948 WNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFI 1007
Query: 1235 LCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQL 1294
LC + L+ LI++ V +GD + IR+ P ++HL FADD L FC+++V L +
Sbjct: 1008 LCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDV 1067
Query: 1295 FCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRF 1354
+ SG KIN+SKS V ++ + + I GKYLG P + GR R+ F
Sbjct: 1068 YEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMF 1127
Query: 1355 NFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSF 1414
N+++E ++++ SW A LS AG+ + KSV +MP Y M F +P + +I L+ +F
Sbjct: 1128 NYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNF 1187
Query: 1415 IWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVL 1474
W + W+++ K GGLG RD N AL+ K +W +++ PN L+ R++
Sbjct: 1188 WWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIM 1247
Query: 1475 SHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET 1520
+Y S+L + + S W +L D + G F +G+G+T
Sbjct: 1248 KARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKT 1293
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 466 bits (1198), Expect = e-129
Identities = 317/1037 (30%), Positives = 508/1037 (48%), Gaps = 43/1037 (4%)
Query: 637 LGFFPIHIEEARGFSGGIWVLANTSVPYNFRVIDTHQQVVTFEVWKDNLSWVCSAVYASP 696
L + ++ E G GG+ +L +SV + + +D + ++ +V +++ S VY P
Sbjct: 17 LEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVD--KNLMDAQVQFGAVNFCVSCVYGDP 74
Query: 697 IPANREILWRHMTLLRRRFLLPWLLLGDFNEILFPSEVRGGDFLPNRAAM----FASVLD 752
+ R W ++ + W + GDFN+IL E GG P R+ + F ++
Sbjct: 75 DRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGG---PRRSDLDCKAFNEMIK 131
Query: 753 TCQLVDLGAVGRRFTWFQKANDRLILSKRLDRALGDMEWKVAFPDAVVDVLNRVHSDHCP 812
C LV++ A G FTW + D I RLDRA G+ EW FP + L+ SDH P
Sbjct: 132 GCDLVEMPAHGNGFTWAGRRGDHWIQC-RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRP 190
Query: 813 ILLQCGSPQTLAHNRPFRFLAAWADHPDFAAVVDNAWRSGEE----CITSKLERVREAST 868
+L++ S Q ++ FRF + D + W G+ + +L R++ +
Sbjct: 191 VLIKLMSSQD-SYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLS 249
Query: 869 VFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSDMVLFEAELQREYRNILRQEELL*YQ 928
+ K+ N + +EA L E ++ + + + L+++ R+EE Q
Sbjct: 250 SWKKQNNLNSLDKINQLEAAL-----EKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQ 304
Query: 929 KARENRVHLGDRNTAYFHTQTLIRRRKNRVHRLKLEDGTWCGDEEVLKRVVHGFFVNLFT 988
K+R+ + G+RN+ YFH R++ R+ +LK +G E V +F NLF
Sbjct: 305 KSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFK 364
Query: 989 GITPLASPRVTHDLFPSLSVEAKSLLLQPVRKDEVRHALMSMNSYTAPGADGFQPFFYKK 1048
P L P +S L+ V E++ A+ S+ +APG DG F++
Sbjct: 365 SSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQH 424
Query: 1049 YWNRVGDSLWHMVKEAFQEGKVNENLLDILVVLIPKVDQPSTVRDLRPISLCNVAFKVIT 1108
YW+ VG+ + VK+ F +G + + LIPK P+ + DLRPISLC+V +K+I+
Sbjct: 425 YWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIIS 484
Query: 1109 KVLVNRLRPFLRKLIGPMQSSFLPGRGTMDNAFLAQEVIHHMS-KSTAKRGMVAFKIDLE 1167
K++ RL+P+L +++ QS+F+ R DN +A E++H + +A K D+
Sbjct: 485 KIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMS 544
Query: 1168 KAYDSVSWSFLQETLELYGFPEVTINLIMSSVTSSQVSILWNGCRLPAFKPGRGLRQGDP 1227
KAYD V WS+L+ L GF +N IM V+S S+L N C RGLRQGDP
Sbjct: 545 KAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDP 604
Query: 1228 MSPYLFVLCMERLSVLIQSLVDKGDWKPIRLSKNGPPISHLFFADDVLLFCEASVAQVNL 1287
+SP+LFVLC E L+ L+ +G + I+ S+NGP + HL FADD L C+AS Q +
Sbjct: 605 LSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLV 664
Query: 1288 LASTMQLFCDSSGLKINLSKSKAIVSKGVSEVVKDSISVVAPIPFVHDLGKYLGFP--LK 1345
L ++++ +++G INL+KS + V E +K +I I G YLG P
Sbjct: 665 LQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFS 724
Query: 1346 GGRIHRNRFNFLLESIQRKLGSWRANMLSLAGRVCLAKSVIAAMPTYTMQVFNMPRGVTC 1405
G ++ + ++L + ++ KL W LS G+ L KSV AMP + M F +P
Sbjct: 725 GSKV--DMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCE 782
Query: 1406 KINQLIRSFIWSGKGGGHGWHLVNWEKITQPKDRGGLGVRDTELANTALMGKAIWCLMHK 1465
+ + SF W H +WE++ PKD GGLG RD + N AL+ K W L+H
Sbjct: 783 NLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHF 842
Query: 1466 PNKLWVRVLSHKYLSNSSVLQVQAKPQDSQVWKGLLKARDRLHTGFVFRLGNGET-SLWH 1524
P+ L R+L +Y + L + S W+ +L R+ L G R+G+G + +W
Sbjct: 843 PDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWI 902
Query: 1525 DDWSGMGNIAPAVPYVDIHDIDRRLCDLVD--NGTWNMQVLY-TSLPVDVLERLQKIKPT 1581
D W I+D+ ++ L++ G W+ +VL+ LP D+L R++ IKP
Sbjct: 903 DPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDIL-RIKAIKPV 961
Query: 1582 IVPNRQDVWTWETNSMGIYTVRGAYRWL------QDQQSHLPVVDDW----NWIWKLKVP 1631
I ++ D + W+ N G ++V+ AY WL Q+ +S + + +W L+
Sbjct: 962 I--SQADFFVWKLNKSGDFSVKSAY-WLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTD 1018
Query: 1632 EKIRTFVWLTLQNSLQV 1648
KI+ F+W L L V
Sbjct: 1019 PKIKIFLWKVLSGILPV 1035
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 462 bits (1190), Expect = e-128
Identities = 306/978 (31%), Positives = 472/978 (47%), Gaps = 34/978 (3%)
Query: 726 NEILFPSEVRGGDFLPNRAAM-FASVLDTCQLVDLGAVGRRFTWFQKANDRLILSKRLDR 784
NEIL SE RGG + + F S + L DL G F+W D + +RLDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFV-RQRLDR 94
Query: 785 ALGDMEWKVAFPDAVVDVLNRVHSDHCPILLQCGSPQTLAHNRPFRFLAAWADHPDFAAV 844
A+ + W +FP + L SDH P+++ + + FRF D+ A+
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQ-FRFDNRLRDNDVVNAL 153
Query: 845 VDNAW-RSGEECITSKLERVREASTVFNKEVFGNIFRRKRHVEARLRGVQRELDRRVTSD 903
+ W +G+ + +K+ + R +E+ + + + Q+ L+ +T+D
Sbjct: 154 IQETWTNAGDASVLTKMNQCR-------REIINWTRLQNLNSAELIEKTQKALEEALTAD 206
Query: 904 ------MVLFEAELQREYRNILRQEELL*YQKARENRVHLGDRNTAYFHTQTLIRRRKNR 957
+ A L+ Y+ EE Q++R +H GDRNT YFH T RR +NR
Sbjct: 207 PPNPTTIGALTATLEHAYK----LEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNR 262
Query: 958 VHRLKLEDGTWCGDEEVLKRVVHGFFVNLFTGITPLASPRVTHDLFPSLSVEAKSLLLQP 1017
+ ++ +G +E + +++ G+F +FT + V + P +S L +
Sbjct: 263 LTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRI 322
Query: 1018 VRKDEVRHALMSMNSYTAPGADGFQPFFYKKYWNRVGDSLWHMVKEAFQEGKVNENLLDI 1077
+EV+ A+ S+N+ APG DGF FY YW+ + + ++ F + +
Sbjct: 323 PNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNET 382
Query: 1078 LVVLIPKVDQPSTVRDLRPISLCNVAFKVITKVLVNRLRPFLRKLIGPMQSSFLPGRGTM 1137
+ LIPK P V D RPI+LCN+ +K++ K++ R++ L KLI QS+F+PGR
Sbjct: 383 HIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVIS 442
Query: 1138 DNAFLAQEVIHHMSKSTAKRGM-VAFKIDLEKAYDSVSWSFLQETLELYGFPEVTINLIM 1196
DN + EV+H + S+AK+ +A K D+ KAYD V W FL++ L+ +GF + I+ ++
Sbjct: 443 DNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVL 502
Query: 1197 SSVTSSQVSILWNGCRLPAFKPGRGLRQGDPMSPYLFVLCMERLSVLIQSLVDKGDWKPI 1256
VTS S L NG P RGLRQGDP+SP LF+LC E LS L +
Sbjct: 503 ECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGV 562
Query: 1257 RLSKNGPPISHLFFADDVLLFCEASVAQVNLLASTMQLFCDSSGLKINLSKSKAIVSKGV 1316
R+S NGP ++HL FADD + F ++ N L+ + + +SG IN KS S
Sbjct: 563 RVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKT 622
Query: 1317 SEVVKDSISVVAPIPFVHDLGKYLGFPLKGGRIHRNRFNFLLESIQRKLGSWRANMLSLA 1376
VK + + I GKYLG P GR R+ F +++ I++K SW + LS A
Sbjct: 623 PRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQA 682
Query: 1377 GRVCLAKSVIAAMPTYTMQVFNMPRGVTCKINQLIRSFIWSGKGGGHGWHLVNWEKITQP 1436
G+ + K+V+A+MP Y+M F +P + KI L+ F W K V W K+T P
Sbjct: 683 GKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNP 742
Query: 1437 KDRGGLGVRDTELANTALMGKAIWCLMHKPNKLWVRVLSHKYLSNSSVLQVQAKPQDSQV 1496
K+ GGLG RD E N +L+ K W L++ P L R+L KY +SS ++ + Q S
Sbjct: 743 KNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHG 802
Query: 1497 WKGLLKARDRLHTGFVFRLGNGE-TSLWHDDWSGMGN-IAPAVPYVDIHDIDRRLCDLVD 1554
W+ ++ R+ L G + + NGE S+W+D W + + P P + H D R+ L++
Sbjct: 803 WRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQ-DLRVSALIN 861
Query: 1555 NGT--WNMQVLYTSLPVDVLERLQKIKPTIVPNRQDVWTWETNSMGIYTVRGAYRWLQDQ 1612
T W+ + LP E L K P D W G YT R Y
Sbjct: 862 QNTLQWDWNKIAVILP--NYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVA 919
Query: 1613 QSHLPVVDDWNW---IWKLKVPEKIRTFVWLTLQNSLQVNLHRFRCKMAASPSCSRCSAP 1669
+P +NW +WKL+ KI+ +W +L V + R ++ S +C RC AP
Sbjct: 920 SIPIPQT-QFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCGAP 978
Query: 1670 EEDILHCLRTCPHSQELW 1687
E H C + ++W
Sbjct: 979 -ESTTHLFFHCEFAAQVW 995
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.332 0.143 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,261,637,324
Number of Sequences: 2540612
Number of extensions: 138288465
Number of successful extensions: 317058
Number of sequences better than 10.0: 1399
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 596
Number of HSP's that attempted gapping in prelim test: 312421
Number of HSP's gapped (non-prelim): 2277
length of query: 1898
length of database: 863,360,394
effective HSP length: 143
effective length of query: 1755
effective length of database: 500,052,878
effective search space: 877592800890
effective search space used: 877592800890
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0114.7