BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0114.12
         (1414 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]              1239  0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||...  1020  0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu...   996  0.0
gb|AAL76007.1| prpol [Zea mays]                                       928  0.0
gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19...   924  0.0
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu...   923  0.0
gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprote...   914  0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]                    899  0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva...   872  0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv...   870  0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic...   869  0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva...   869  0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap...   869  0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul...   863  0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu...   863  0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18...   863  0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva...   858  0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva...   858  0.0
gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cul...   849  0.0
emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa (japonica cultivar...   843  0.0

>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 1239 bits (3205), Expect = 0.0
 Identities = 640/1439 (44%), Positives = 902/1439 (62%), Gaps = 116/1439 (8%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQED----------- 96
            C+YH+  GHTT+ C  L+ +I+ L++AGHL  FVK T T   +     D           
Sbjct: 464  CQYHRNYGHTTEGCQALKDKIEELVQAGHLRKFVKTTITAPRSPQRDHDPRERSGRRDDR 523

Query: 97   ----------------------------------KGKGKEIVE------ELGDPVGECSS 116
                                              K K + ++        LG P  E + 
Sbjct: 524  TRDNHYRSSRRKRSESPIRRTRPKSESPERRSRTKQKVRTVINTIAGPVSLGQPPQEINY 583

Query: 117  IAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFAHVIPYDNDPIVV 176
            IAGGF GG  S+ ARK+++  + SV  S   +   +  PI FT +DF  + P  +DP+V+
Sbjct: 584  IAGGFAGGGCSNSARKKHLRAIQSVH-STPTQRRPHIPPITFTDEDFTAIDPSQDDPMVI 642

Query: 177  TIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVGFTGDRVSVRGYVE 236
            T+ ++ +   KV +DQGSS DI+Y + F ++ + E+ ++PY   +VGF+ +RV  +G+++
Sbjct: 643  TVEIDKFAIAKVLVDQGSSVDILYWETFKKMKIPEAEIQPYNEQIVGFSRERVDTKGFID 702

Query: 237  IPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVG 296
            + T FG+    K   ++YL++    +YN+LLGR ++N++ A++ST HL +K+P+ NG + 
Sbjct: 703  LYTTFGDDYLSKTINIRYLLVNANTSYNILLGRPSINRLKAIVSTPHLAMKFPSVNGDIA 762

Query: 297  ILRVDQNAARECYLRSVA------LYGRKAAKESHRITEIFPQEG------------FSL 338
             + +DQ  ARECY+ S+       LY   A + + R      +                L
Sbjct: 763  TVHIDQKTARECYVASLKVEPTRRLYTTSAERTTERRGRSTERRSRGRESRRHLVALVDL 822

Query: 339  DPRDEADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDR--LITLLGDNLDLFAWTIND 396
            DPR   DD R +  E+ + + ++DK  K   G + + +DR  +   L  N DLFAWT  D
Sbjct: 823  DPR--LDDPRMEAGEDLQPIFLRDKDRKTYMGTSLKPDDRETIGKTLTKNADLFAWTAAD 880

Query: 397  VPGIDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLA 456
            +PG+   VITH+L++   A P+ Q  R++ EE+ KA + ET+KLI+A FI++  Y TWLA
Sbjct: 881  MPGVKSDVITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAHYTTWLA 940

Query: 457  NVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQI 516
            NVVMVKK NGKWRMC DYT LNK CPKDSYPLP +D+LVDGA+G+++LS +DAYSGYNQI
Sbjct: 941  NVVMVKKTNGKWRMCVDYTDLNKACPKDSYPLPTIDRLVDGAAGHQILSFLDAYSGYNQI 1000

Query: 517  MMHPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIV 576
             M+  D E TAF T+  N+ Y+ MPFGLKNAGATYQRLMD +F   +GRN+EVYVDD++V
Sbjct: 1001 QMYHRDREKTAFRTDSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGRNVEVYVDDIVV 1060

Query: 577  KSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAI 636
            KS     H  DLKE F  LR Y+M+LNPEKC+FG++GGKFLGFMLT RGIE NP+K +AI
Sbjct: 1061 KSDSCEQHVSDLKEVFQALRQYRMRLNPEKCAFGVEGGKFLGFMLTHRGIEANPEKCKAI 1120

Query: 637  LEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLK 696
             EM+SP  +KE+QRL  R+ +LSRF+P   ++  P    LKK SKF+WT+ECEQ F +LK
Sbjct: 1121 TEMRSPKGLKEIQRLVSRLTSLSRFVPKLAERTRPIIKLLKKTSKFEWTDECEQNFQQLK 1180

Query: 697  ETLATLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQK 756
              LA+ PV+ KP    P+V+YLAV+++AVS+ L+QE   +++ +YFVS  L  AE RYQ 
Sbjct: 1181 AFLASPPVIQKPNAREPIVVYLAVSNEAVSSALVQEIKAEERPVYFVSRVLHDAETRYQM 1240

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            +EK A A++ TARR+R YFQ+ +V V+T+ P+ ++L KPDL+GR++ W+VELSE+ I+Y+
Sbjct: 1241 VEKVAFALVITARRMRMYFQNHKVIVRTNYPIMKILTKPDLAGRMIGWAVELSEFHIEYQ 1300

Query: 817  PRGQVTVQSLIDFVAELTPTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSL 876
            PRG +  Q+L DF AELTP   E+T   W L VDGSSN+  SGAG+ +E P ++++EQ++
Sbjct: 1301 PRGAIKSQALADFTAELTPYLTERTP-RWTLYVDGSSNSRSSGAGVVLEGPGEIVVEQAM 1359

Query: 877  KFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLE 936
            KFEFK SNNQ+EYEA+IAGL LAIEL V  +  K DS+LVV Q+ GEY+V++  L +Y  
Sbjct: 1360 KFEFKTSNNQAEYEAIIAGLHLAIELEVTNITCKSDSRLVVGQLTGEYEVRETLLQQYFH 1419

Query: 937  VVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKL 996
             V+ L+   KEI  +HV R  N RAD L++LA+  + G +++ I  TL +PS+   E   
Sbjct: 1420 FVKNLLNRFKEISFQHVRRENNTRADALSRLATLKKKGAHRSAIHVTLAKPSVGTEEC-- 1477

Query: 997  KVVKSVNEGELPWMESIKTFLENPPKEDDLNTRTKRREASFYTLVDGELYRRGIMSPMLK 1056
                   + +  WM  IK +L +   +  L  +T + +A+ Y L+  +LYRRG   P+LK
Sbjct: 1478 ----MATDTQPNWMTPIKQYLTDGVCDPHLE-KTMKLQAARYILIGEDLYRRGYSRPLLK 1532

Query: 1057 CVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVFS 1116
            C+  +    +M E+HEG+C +H G R+++ K++RAG+YWPT++ DC EY           
Sbjct: 1533 CLGPEQVTYVMTELHEGICGTHSGARTMSAKILRAGYYWPTLQGDCTEY----------- 1581

Query: 1117 DLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAVATIT 1176
                                  G DI+GPF   K Q K+++V +DYFTKWIEAE +  IT
Sbjct: 1582 ----------------------GMDIIGPFTPGKGQCKFLLVGIDYFTKWIEAEPLTAIT 1619

Query: 1177 AAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQTNGQA 1236
            A  V++F+W+ IVCRFG+P  ++ DNG QFT     EF  ++ I+   +SVEHPQTNGQA
Sbjct: 1620 ARNVQSFVWKNIVCRFGLPQIIITDNGRQFTDRGLAEFYEKLHIKHITSSVEHPQTNGQA 1679

Query: 1237 ESANKVILKGLKKKLDEAKGLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAMLSVEI 1296
            E+ANKVIL  LKK+L  +KG W EEL  VLWAY  T QS+T+ETPY LTYGT+AM+ VEI
Sbjct: 1680 EAANKVILNELKKRLGPSKGNWTEELLEVLWAYRCTPQSTTQETPYSLTYGTEAMIPVEI 1739

Query: 1297 ENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKVVPRKMRVG 1356
               S R    + + N E+L+  L ++ E + +  IR EA K++ AR++++KV PR  + G
Sbjct: 1740 GEPSLRRQTLDLDLNKESLLVGLDLINELRDKCKIREEACKIRAARRYNSKVKPRSYQKG 1799

Query: 1357 DLVL*KNTIPDKH-NKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNASHLKQYF 1414
            DLV    +   K   K S NW GP+RI     G AY LE LSG+  PRTWNA+HLK Y+
Sbjct: 1800 DLVWRMRSDARKDGGKFSSNWEGPFRISNTATGGAYYLEYLSGKSAPRTWNATHLKFYY 1858


>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
            F5M15.26 [imported] - Arabidopsis thaliana
          Length = 1838

 Score = 1020 bits (2638), Expect = 0.0
 Identities = 581/1424 (40%), Positives = 818/1424 (56%), Gaps = 99/1424 (6%)

Query: 47   WCEYHKALGHTTDNCWNLRREIDRLIKAGHLA---------------------NFVKDTA 85
            +CEYHK+  H+T+NC  L+  +    K+G +                       ++ D  
Sbjct: 457  YCEYHKSRAHSTENCRFLQGLLMAKYKSGGITIECDRPPINNKNQRRNETTARQYLNDQT 516

Query: 86   TP----EVAKITQED------KGKGKEIVEELGDPVGECSSIAGGFGGGAISSRARKRY- 134
             P    E   IT  D      +  GK I  E    V +   I GG    + S R+ K+Y 
Sbjct: 517  KPPTPAEQGIITSADDPAAKRQRNGKAIAAE-PVVVRQVHVIMGGLQNCSDSVRSIKQYR 575

Query: 135  ------VATVHSVQESNEGECWVNHSPIIFTPQDFAHVIPYDNDPIVVTIRVNNYVTKKV 188
                  VA   S   +         +PI FT  D   +    NDP+VV + +++    +V
Sbjct: 576  KKAEMVVAWPSSTSTTRNPN---QSAPISFTDVDLEGLDTPHNDPLVVELIISDSRVTRV 632

Query: 189  FLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGEFVK 248
             +D GSS D+I+ D    + + +  +KP    L GF GD V   G +++P   G G    
Sbjct: 633  LIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVG-GLIA- 690

Query: 249  KFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAAREC 308
               VK++V+   A YNV+LG   ++++ A+ ST H  VK+P  NG +  LR  + A    
Sbjct: 691  --WVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG-IFTLRAPKEA---- 743

Query: 309  YLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDEADDFRPQPLEETKQVQVKDKFLKIG 368
                      K    S+  +E+   E  ++D  D                    + + +G
Sbjct: 744  ----------KTPSRSYEESELCRTEMVNIDESDPT------------------RCVGVG 775

Query: 369  SGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHKLAIRPGATPVIQPMRRMSEE 428
            + ++      LI LL  N   FAW+I D+ GIDP +  H+L + P   PV Q  R++  E
Sbjct: 776  AEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPE 835

Query: 429  KHKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPL 488
            + +AV  E EKL+KA  I EV+YP WLAN V+VKK NGKWR+C DYT LNK CPKDSYPL
Sbjct: 836  RARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPL 895

Query: 489  PNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTAFMTNQANYCYKTMPFGLKNAG 548
            P++D+LV+  SGN LLS MDA+SGYNQI+MH  D+E T+F+T++  YCYK M FGLKNAG
Sbjct: 896  PHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAG 955

Query: 549  ATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCS 608
            ATYQR ++K+ + Q+GR +EVY+DDM+VKS +  DH   L + FD L TY MKLNP KC+
Sbjct: 956  ATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCT 1015

Query: 609  FGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDK 668
            FG+  G+FLG+++T RGIE NP + RAILE+ SP + +EVQRLTGR+AAL+RF+  + DK
Sbjct: 1016 FGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDK 1075

Query: 669  AAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKPTPGVPLVLYLAVTDKAVSTV 728
              PF+  LK+ ++F W ++ E+AF KLK+ L+T P+L KP  G  L LY+AV+D AVS+V
Sbjct: 1076 CLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSV 1135

Query: 729  LLQEEGKKQKVIYFVSHTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVKVKTDVPL 788
            L++E+  +Q+ I++ S +L  AE RY  IEKAALA++ +AR+LRPYFQS  + V TD PL
Sbjct: 1136 LVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPL 1195

Query: 789  RQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVTVQSLIDFVAELTPTEGEKTQG----- 843
            R  L  P  SGR+  W+VELSEYDI + PR  +  Q L DF+ EL     E+        
Sbjct: 1196 RVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSAERAVSGNRGE 1255

Query: 844  EWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELG 903
            EW L VDGSS+  GSG GI + SP   ++EQS +  F A+NN +EYE LIAGLRLA  + 
Sbjct: 1256 EWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQ 1315

Query: 904  VQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADV 963
            +  +    DSQL+  Q+ GEY+ K+ ++  YL++V+ +  + +  K+  +PRG N  AD 
Sbjct: 1316 ITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADA 1375

Query: 964  LAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLKVVKSVNEGELP-------WMESIKTF 1016
            LA LA T      + +  E++ +PSID  +  +++V ++     P       W   I+ +
Sbjct: 1376 LAALALTSDSDLRRIIPVESIDKPSIDSTD-AVEIVNTIRSSNAPDPADPTDWRVEIRDY 1434

Query: 1017 L-ENPPKEDDLNTRTKRREASFYTLVDGELYRRGIMSPMLKCVDTKDALGIMAEVHEGVC 1075
            L +     D    R  R +A+ YTL+   L +      ML C+   +   IM E HEG  
Sbjct: 1435 LSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAA 1494

Query: 1076 SSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVFSDLHKAPPEELTTMMAPWPF 1135
             +H GGR+LA+K+ + GFYWPTM  DC  +  KCE+CQ  +     P E L   +AP+PF
Sbjct: 1495 GNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPF 1554

Query: 1136 AMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAVATITAAKVRNFLWQRIVCRFGVP 1195
              W  DI+GP P A  Q ++I+V  DYFTKW+EAE+ ATI A  V+NF+W+ I+CR G+P
Sbjct: 1555 MRWAMDIVGPMP-ASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLP 1613

Query: 1196 MALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQTNGQAESANKVILKGLKKKLDEAK 1255
              ++ DNG+QF S     FCA   I +  ++  +PQ NGQAE+ NK IL GLKK+LDE K
Sbjct: 1614 YEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKK 1673

Query: 1256 GLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAMLSVEIENQSWRVARFNEND--NGE 1313
            G WA+EL GVLW+Y TT +S+T +TP+   YG +AM   E+   S R +   +N   N  
Sbjct: 1674 GAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDR 1733

Query: 1314 NLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKVVPRKMRVGDLVL*K---NTIPDKHN 1370
             ++  L  L E +  A  R +  ++  A+ ++ KV  R   VGDLVL K   NT      
Sbjct: 1734 MMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAG 1793

Query: 1371 KLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNASHLKQYF 1414
            KL  NW G Y++   V    Y+L  +SG  VPRTWN+ HLK+Y+
Sbjct: 1794 KLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837


>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 2001

 Score =  996 bits (2576), Expect = 0.0
 Identities = 540/1381 (39%), Positives = 826/1381 (59%), Gaps = 43/1381 (3%)

Query: 46   RWCEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVE 105
            ++C  H   GH+T+ C  +   +++ +      N  +           +  +    E +E
Sbjct: 651  KFCHIHGPGGHSTEECRQMTHLLEKHVN--RYENKYEGARDQRGQNAIEAPQVMKIEAIE 708

Query: 106  ELGDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPII-FTPQDFA 164
            E+  P    ++I GG   G  S R RK YV  V+ V  S +    V    +I F P+D  
Sbjct: 709  EV--PKRVINAITGGSSLGVESKRQRKAYVRQVNHVGTSYQSNPPVYSKTVISFGPEDAE 766

Query: 165  HVIPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVGF 224
             ++    DP+VV++ +     ++V +D GSSAD+++ DAF ++ + E  L      L GF
Sbjct: 767  GILFPHQDPLVVSVEIAQCEVQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGF 826

Query: 225  TGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHL 284
             G +V   G + +   FG+G  V+K ++ + V+     YN +LGR T+N   A+I   ++
Sbjct: 827  GGQQVHAIGKISLQVVFGKGTNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYI 886

Query: 285  TVKYPACNGKVGILRVDQNAARECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRDEA 344
             +K P   G + + R +Q AAR+  L+     G  + K  H + +   ++G  +  +   
Sbjct: 887  CMKLPGLRGVITV-RGEQLAARKYELQ-----GTPSVKGVHVVDQ---KQGEYIKIQ--- 934

Query: 345  DDFRPQPLEETKQVQVKD----KFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGI 400
               +P P  +TK+VQ+ +    KF+ IG  L    E+ ++ ++ +N+ +FAW+ +++ G+
Sbjct: 935  ---KPIPEGKTKKVQLDEHNPGKFILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGV 991

Query: 401  DPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVM 460
            D  +I H LAI+ G  P  Q +RRMS ++ +A ++E EKL+KA+ IREV +P WLAN V+
Sbjct: 992  DRSLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVL 1051

Query: 461  VKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHP 520
            VKKANGKWRMC D+T LNK CPKD +PLP +D+LVD  +G EL+S +DAYSGY+Q+ M  
Sbjct: 1052 VKKANGKWRMCIDFTDLNKACPKDDFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVK 1111

Query: 521  SDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSAR 580
             DEE T+F+T    YC+  MPFGLKNAGAT+ RL+ K+ +KQ+GRN+E Y+DD++VKS +
Sbjct: 1112 EDEEKTSFITPFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQ 1171

Query: 581  ASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMK 640
            A  HG DL+E F+ LR   +KLNPEKC FG++ GK LGF+++ RGIE NPDK  AI +M+
Sbjct: 1172 AFTHGKDLQETFENLRKCSVKLNPEKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQME 1231

Query: 641  SPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLA 700
             P + +EVQRLTGRMA+LSRFL  + +K  PFF  L+  + F+WT EC+QAF  LK+ L 
Sbjct: 1232 PPKNTREVQRLTGRMASLSRFLSKSAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLH 1291

Query: 701  TLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTLQGAELRYQKIEKA 760
             +P L+ P  G PL++Y+A T   VS VL+QEE  +Q  +YFVS  LQG + RY ++EK 
Sbjct: 1292 EMPTLASPPKGQPLLMYVAATPATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKL 1351

Query: 761  ALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQ 820
              AI+  +R+LR YF S  + + +  P+ +VL   +++GR+  W++EL  +D++Y  R  
Sbjct: 1352 IYAIVMASRKLRHYFLSHDITIPSAYPIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTA 1411

Query: 821  VTVQSLIDFVAELTPTE---GEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLK 877
            +  Q L DFVAE TP E    E+ +  W++  DG+ N  G+GA   +++P K  ++ S++
Sbjct: 1412 IKSQVLADFVAEWTPNEVEQQEEVKKPWIVFSDGACNAAGAGAAAVVKTPMKQTLKYSVQ 1471

Query: 878  FEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEV 937
              F ++NN +EYE ++  +R A  LG ++L +K DS+LV       ++ K+  ++KYLE 
Sbjct: 1472 LVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAKYLEE 1531

Query: 938  VRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVEIKLK 997
             R        I ++ + R +N  AD LAK A+TG+    +    + + +PS +    K +
Sbjct: 1532 ARLNEKHFLGITVKAITREENGEADELAKAAATGQ--PLENSFFDIITQPSYE----KKE 1585

Query: 998  VVKSVNEGELPWMESIKTFL---ENPPKEDDLNTRTKRREASFYTLVDGELYRRGIMSPM 1054
            V     EG+  W E I  +L   + P KE++   +  +  +  Y +V+G+LY+ G+ +P+
Sbjct: 1586 VACIQREGD--WREPILKYLVSAQLPEKEEE--AKRIQLMSKKYKVVEGQLYKSGVTAPL 1641

Query: 1055 LKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQV 1114
            LKCV  ++ + ++ E+HEG+C +H    S+A KVIR G YWPT+ KD  +Y+K C+ CQ 
Sbjct: 1642 LKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEKYIKTCKACQK 1701

Query: 1115 FSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAVAT 1174
            F  + KAPP+EL  +   WPF  WG DI+GP P AK  ++++IVA++YF++WIEAEAVA 
Sbjct: 1702 FGPMTKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVAR 1761

Query: 1175 ITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQTNG 1234
            IT+A V+ F+W+ I+CRFG+P  +V DNG QF S   ++ C  + +++ FASV HPQTNG
Sbjct: 1762 ITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQINFASVGHPQTNG 1821

Query: 1235 QAESANKVILKGLKKKLD-EAKGLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAMLS 1293
              E AN  I++ +KK+L+  AKG W E+L  VLWA  TT   ST  TP+RL YG +AM  
Sbjct: 1822 VVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTP 1881

Query: 1294 VEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKVVPRKM 1353
             E+   S R+    +++ G  +   L ML E + EA  +  +        ++ KV  R +
Sbjct: 1882 SEVGAHSPRMIFDQKDEEGREI--TLEMLDEIRVEALEKMASYTEGTKSYYNQKVKTRPI 1939

Query: 1354 RVGDLVL*KNTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNASHLKQY 1413
              GDLVL K        KL   W GP+ +       A+KL  L G+++  TWNA  LK++
Sbjct: 1940 EEGDLVLKKVLNEVAVGKLESKWEGPFIVKKKTETGAFKLAYLDGEELKHTWNAVSLKKF 1999

Query: 1414 F 1414
            +
Sbjct: 2000 Y 2000


>gb|AAL76007.1| prpol [Zea mays]
          Length = 1317

 Score =  928 bits (2399), Expect = 0.0
 Identities = 500/1278 (39%), Positives = 753/1278 (58%), Gaps = 32/1278 (2%)

Query: 152  NHSPIIFTPQDFAHVIPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKE 211
            +H PI F+ +D        ND +V++  +  ++   V +D GS+ADII+  AF ++   E
Sbjct: 56   SHIPITFSQEDLQLKDYPHNDAMVISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQEPE 115

Query: 212  SNLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDT 271
              +      L GF G ++   G + +   FG     +  QV + ++     YN ++GR T
Sbjct: 116  DKIHDATHPLCGFGGRQIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGT 175

Query: 272  LNKVCAVISTAHLTVKYPACNGKVGILRVDQNAAREC---YLRSVALYGRKAAKESHRIT 328
            LN   A++  A+L +K P+  G + I    Q AAR     +  S A++    A       
Sbjct: 176  LNAFEAILHPAYLCMKIPSDQGPIAI-HGSQEAARRAEGNWTDSKAIHNIDGA------- 227

Query: 329  EIFPQEGFSLDPRDEADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLD 388
            E   Q  F  +    AD  +P  L E     + ++ + +GS L+ EQE  LI  L +N D
Sbjct: 228  EACEQYKFRREKAASADQPKPMLLCE----DIAEQKVLLGSQLSEEQEKTLIRFLFNNKD 283

Query: 389  LFAWTINDVPGIDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIRE 448
            +FAW+ ND+ G++  VI H L + P   P  Q +R+MS++K +  + E ++L+ A  IRE
Sbjct: 284  VFAWSANDLCGVNRDVIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIRE 343

Query: 449  VQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMD 508
            V+YP WLAN VMVKKANGKWRMC D+T LNK CPKD +PLP +D LVD A+ +EL+SL+D
Sbjct: 344  VKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDAAASSELMSLLD 403

Query: 509  AYSGYNQIMMHPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNME 568
             YSGY+QI M   DE  T+F+T    YCY  MP GLKNAG ++ R+  K+   Q+GRN+ 
Sbjct: 404  CYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVL 463

Query: 569  VYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEV 628
             YVDD+IVKS +  +H  DL+E F   R   +KLNPEKC FG++ GKFLG +++++GIE 
Sbjct: 464  TYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEA 523

Query: 629  NPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEEC 688
            NP K  AIL M+ PT+ K  QRLTGR+A+L+RF+  + ++  PFF  LK    FQW    
Sbjct: 524  NPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQ 583

Query: 689  EQAFTKLKETLATLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQE----EGKKQKVIYFVS 744
            ++AF +LK+ L  L  L+ P  G PL+LY+A +  AVS  L+QE    + K+Q  IYFVS
Sbjct: 584  QKAFEELKQYLIDLTTLTPPMSGAPLLLYVAASHSAVSAALVQEKLDGQVKRQAPIYFVS 643

Query: 745  HTLQGAELRYQKIEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSW 804
              L  ++  Y ++EK   A+L  +R+LR YFQ++ + V +  PL+ +++  + +GR+  W
Sbjct: 644  EVLSLSKKNYTELEKVLYAVLMASRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKW 703

Query: 805  SVELSEYDIQYEPRGQVTVQSLIDFVAELTP----TEGEKTQGEWVLSVDGSSNNTGSGA 860
            + EL+E+ I+Y  R  +  Q+L DF+A+ TP     E  K    W +  DGS    G+GA
Sbjct: 704  AAELNEFCIEYVHRSSIQSQALADFIADWTPGAQEEETNKDNEAWTVFCDGSWGTFGAGA 763

Query: 861  GITIESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQV 920
               + SP K+ I  + K +F  +NN +EYEAL+ GLR    +G+++  +K DSQ+V   +
Sbjct: 764  AAVLVSPSKVKICYAAKLDFNCTNNIAEYEALVLGLRKLKAMGIRRAILKTDSQVVSGHI 823

Query: 921  KGEYQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVI 980
                + KDP+L KYL++VRR+    +   ++++PRGQNE AD+LAK A+ G L     V 
Sbjct: 824  DKSCKAKDPKLEKYLDMVRRIEASFEGFSVKNIPRGQNEHADLLAKSAAQG-LPLPSDVF 882

Query: 981  QETLPRPSIDLVEIKLKVVKSVNEGELPWMESIKTFLENPPKEDD--LNTRTKRREASFY 1038
             ET+  PS++L+E  +  +  V   +  W   I ++L+     DD   N R + R A  Y
Sbjct: 883  FETIKAPSVELLERAVLNISPVFSED--WRTEIISYLQGKFLSDDEAYNKRIEAR-ARPY 939

Query: 1039 TLVDGELYRRGIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTM 1098
             +++GELY+ G+ +P+LKC+   + + +M E+H G+C SHIG R L  KV R GFYWP  
Sbjct: 940  VMIEGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKVFRQGFYWPKA 999

Query: 1099 KKDCLEYVKKCEKCQVFSDLHKAPPEELTTMMAP-WPFAMWGTDILGPFPVAKAQMKYII 1157
              D  E V+KCE CQ  +   K  P  LT ++ P WP   WG D+LGP P A+  ++Y++
Sbjct: 1000 ASDAAELVQKCEGCQKCARDQK-QPSSLTQLIQPTWPLQRWGLDLLGPLPPAQGNLRYVV 1058

Query: 1158 VAVDYFTKWIEAEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAE 1217
            VAV+YF+KWIEA+ +ATIT+A V+ F WQ IVCRFGVP A+ +DNGTQF S   R+FC +
Sbjct: 1059 VAVEYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAITVDNGTQFDSEAFRDFCDQ 1118

Query: 1218 MGIEMRFASVEHPQTNGQAESANKVILKGLKKKL-DEAKGLWAEELPGVLWAYNTTEQSS 1276
            +G ++ FASV HP++NG  E AN +I+ G+ K + ++ +G W ++L  V+W++NTT   S
Sbjct: 1119 IGTKIHFASVRHPESNGLVERANGIIMTGIMKLIFNQPRGKWPDQLIKVVWSHNTTTSRS 1178

Query: 1277 TKETPYRLTYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAG 1336
            T  TP++L +G +A+   + +  S R+    E+D+          L   + +A       
Sbjct: 1179 TGFTPFKLLFGDEAITPEKAKAGSIRIVASAESDSEAAYSIEKDALEGIRLQAVENINKY 1238

Query: 1337 KVKVARKFSTKVVPRKMRVGDLVL*KNTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQL 1396
            + +  +    KV  + +  G LVL +   P+   KL   W GP+ +       +Y+L+ +
Sbjct: 1239 QAETVKWRDRKVRLKNIEPGHLVLRRVANPETVGKLQLKWDGPFLVASSSRPGSYRLKDM 1298

Query: 1397 SGQKVPRTWNASHLKQYF 1414
            +G  +PR+WNA  L++Y+
Sbjct: 1299 NGSDIPRSWNADELRRYY 1316


>gb|AAD27571.1| polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
            [Sorghum bicolor]
          Length = 1877

 Score =  924 bits (2387), Expect = 0.0
 Identities = 520/1332 (39%), Positives = 764/1332 (57%), Gaps = 57/1332 (4%)

Query: 111  VGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGEC--WVNHSPIIFTPQDFAHVIP 168
            +G    IAGG      + + +K ++  V++V       C  W + +PI FT +D      
Sbjct: 574  IGMILPIAGGSSMEFQTKKQKKDHLRLVNNVAVQGPVRCTDW-SRTPITFTEEDLRLESY 632

Query: 169  YDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVGFTGDR 228
               D +V+T  V  +   ++ +D GSSADII+   FD++ L  S L+P +  L+GF G +
Sbjct: 633  PHTDALVITTNVAGWGVSRILVDSGSSADIIFAGTFDQMKLSRSQLQPSESPLIGFGGKQ 692

Query: 229  VSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKY 288
            +   G V +P +FG  E  +   V + V+     YN + GR  LNK  A     +L +K 
Sbjct: 693  IHALGKVALPVSFGTTENARTEYVTFDVVDLHYPYNAIFGRGFLNKFNAAAHMGYLCMKI 752

Query: 289  PACNGKVGILRVDQNAARECYLRSVALYGRKAAKESHRITEIFPQEGFSLDPRD------ 342
            PA +G + +      + +E      A+Y     K    I  +   +  +  P D      
Sbjct: 753  PALHGVITV----HGSQKEARNIEKAIY-----KSFRNINSVDSTQHEASQPPDMPRGKT 803

Query: 343  ---EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPG 399
               + ++ +  PL+E     V DK + I + L+ E+E  L+ +L  N D+FAW+  D+ G
Sbjct: 804  NLADQEETKCIPLQEA----VPDKKVTISATLSREEELELLDVLQKNQDIFAWSAADLQG 859

Query: 400  IDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVV 459
            +   +I H L I P   P  Q  R+MSEE+  A + E ++L+ A+ IREV YP WLANVV
Sbjct: 860  VSRDIIEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVV 919

Query: 460  MVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMH 519
            +V K NGK RMC D+T LNK C KDS+PLP +D  VD A+G +  SL+D +SGY+QI + 
Sbjct: 920  LVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLK 979

Query: 520  PSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSA 579
              DE   +F T    YCY  MP GLKNAGAT+ R+M K+   Q+ RN+  YVDD++V S 
Sbjct: 980  KEDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSK 1039

Query: 580  RASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEM 639
            R  DH  DL+E F  LR+  +KLNPEKC FG+  GK LG++++S GI  NPDK +AI+ M
Sbjct: 1040 RKEDHIKDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSM 1099

Query: 640  KSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETL 699
              P++ KEVQRLTGR+AAL+RF+  + +++ PFF  L++  K +W  E  +AF +LK  +
Sbjct: 1100 AEPSNKKEVQRLTGRIAALNRFISRSAERSLPFFKVLRE-GKTEWGPEQSEAFRQLKNYI 1158

Query: 700  ATLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQE----EGKKQKVIYFVSHTLQGAELRYQ 755
            AT  +++ P P  PL+LY+A ++ AVS VL+ E    +G  Q+ +Y+VS  L GA+L Y 
Sbjct: 1159 ATNLLVTVPEPDTPLLLYVAASEHAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNYT 1218

Query: 756  KIEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 815
            +IEK A A+L  +R+L+ YFQS ++KV T  PL  +L+  + SGR+  W+ ELS++DI Y
Sbjct: 1219 EIEKIAYAVLCASRKLKHYFQSHEIKVPTSQPLGDILRNKEASGRIGKWAAELSQFDITY 1278

Query: 816  EPRGQVTVQSLIDFVAELTPT---EGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMII 872
             PR  +  Q+L DF+A+ TP+   E +     W L  DG+    G+GA   + +P  + +
Sbjct: 1279 VPRTSIKSQALADFMADWTPSNKNEEKVIDQPWTLYTDGAWGQAGAGAAAVLIAPSGLKL 1338

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
            + +++ EFKA+NN +EYE LI GL  A   G + L IK DSQ+V  QV+ EY   +P+L+
Sbjct: 1339 KFAIRLEFKATNNIAEYEGLILGLNKAKASGAKTLVIKTDSQVVAGQVEKEYLAHNPELA 1398

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGR---LGNYQTVI----QETLP 985
            +YL VVR L    K   ++++PR +N  AD LAK A+       G +  ++     ETLP
Sbjct: 1399 RYLAVVRGLERRFKGFTLQYIPRAENYEADELAKAAANNTPLPEGTFHQIVTTPATETLP 1458

Query: 986  RPSIDLVEIKLKVVKSVNEGELPWMESIKTFLENPPKEDDLNTRTKRREASF--YTLVDG 1043
            +    ++         + E E  W ++I   L+     DD  T  KR EA    YT +DG
Sbjct: 1459 KAFRSVL---------LTESE-DWRQAIADCLKGKTTVDDEAT-AKRMEARARNYTSIDG 1507

Query: 1044 ELYRRGIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCL 1103
             LY++G++ P+LKC+   +   ++ E+H G+C SHIG R+L+ K +R GFYWPT  +D  
Sbjct: 1508 ILYKKGVVQPLLKCISQSEGRELLREIHSGMCGSHIGPRALSAKALRQGFYWPTHIRDAE 1567

Query: 1104 EYVKKCEKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYF 1163
            E VK C+ CQ FS +   P      + A WP   WG D++GP P A+   K+ +VA++YF
Sbjct: 1568 EIVKTCKACQTFSPIQSGPSALTQLIPASWPLQRWGMDLVGPMPTAQGGNKFAVVAIEYF 1627

Query: 1164 TKWIEAEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMR 1223
            T+WIEA+ + TIT+  +R F WQ IVCRFGVP  L +DNG QF S   +EFC  +G ++ 
Sbjct: 1628 TRWIEAKPLTTITSETIRKFFWQNIVCRFGVPRLLTVDNGKQFDSDNFKEFCHLIGTKIA 1687

Query: 1224 FASVEHPQTNGQAESANKVILKGLKKK-LDEAKGLWAEELPGVLWAYNTTEQSSTKETPY 1282
            FASV HP++NG  E AN+ I   + K  L+  KG W EELP V+W++NTT   +T  TP+
Sbjct: 1688 FASVYHPESNGAVERANRTIFSAISKTLLNLRKGKWVEELPRVVWSHNTTVSRATGFTPF 1747

Query: 1283 RLTYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVAR 1342
            +L YG +AML  EI++QS R  +    ++ E     L  +  E  E +I     + K  R
Sbjct: 1748 KLLYGEEAMLPEEIKHQSLRSMKQQLAEDEEYCKETLESIRLEAVE-NITRYQQETKNWR 1806

Query: 1343 KFSTKVVPRKMRVGDLVL*KNTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVP 1402
                KVV + ++ GDLVL K        KL P W GPY  I      ++ L+ L G+   
Sbjct: 1807 --DRKVVRKDIQNGDLVLRKKGDHPNAGKLQPKWEGPYTAIQAGRSGSFYLKDLEGRTST 1864

Query: 1403 RTWNASHLKQYF 1414
             TWN  +L++++
Sbjct: 1865 HTWNVDNLRRFY 1876


>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
            gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1459

 Score =  923 bits (2386), Expect = 0.0
 Identities = 529/1392 (38%), Positives = 791/1392 (56%), Gaps = 87/1392 (6%)

Query: 46   RWCEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGK---- 101
            ++C  H   GH+T+ C++   ++       H     +  A+     + Q D GK +    
Sbjct: 131  KFCHTHGLGGHSTEECYSKFYKVHG--PCNHATEECRQMASLVEKHVRQYD-GKYEGVQG 187

Query: 102  -------------EIVEELGDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGE 148
                         E +EE   P    ++I GG   G  S R RK YV  +H V  S +  
Sbjct: 188  GQNMLEGQKVMKIEAIEEA--PKRVINAITGGSSLGVESKRQRKAYVRQIHHVGTSYQSV 245

Query: 149  CWVNHSPII-FTPQDFAHVIPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRL 207
                 + +I F P+D   ++    DP+V+++ +     ++V +D GSSAD+++ DAF ++
Sbjct: 246  PPAYSNTVISFGPEDAEGILFPHQDPLVISVEIAQCEVQRVLVDGGSSADVLFYDAFKKM 305

Query: 208  GLKESNLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLL 267
             + E  L      L GF G +V   G + +   FG GE  ++ +V + V+     YN +L
Sbjct: 306  QIPEDRLTHAGIPLQGFGGHQVHTIGKISLQVVFGGGENKRREEVVFDVVDMPYQYNAVL 365

Query: 268  GRDTLNKVCAVISTAHLTVKYPACNGKVGILRVDQNAARECYLRSVALYGRKAAKESHRI 327
            GR T+N   A+I   ++ +K P   G + + R  Q AAR+  L+     G    K  + I
Sbjct: 366  GRSTINIFEAIIHHNYICMKLPGPKGVISV-RGGQLAARKFELQ-----GTPNMKGVYII 419

Query: 328  TEIFPQEGFSLDPRDEADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNL 387
             +   ++G      +   + +P P  +TK+V V DK          E E+          
Sbjct: 420  EQ---KQG------EYNKNQKPIPEGKTKKV-VLDK---------NEPEE---------- 450

Query: 388  DLFAWTINDVPGIDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIR 447
                     + G++  +I H LAI+P   P  Q +RRMS ++ +A + E EKL+KA+ IR
Sbjct: 451  ---------LEGVERSLIEHNLAIKPEHKPKKQKLRRMSIDRQQAAKAELEKLLKAKVIR 501

Query: 448  EVQYPTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLM 507
            EV +P WLAN V+VK   G          LNK CPKD +PLP +D+LVD  +G EL+S +
Sbjct: 502  EVLHPEWLANPVLVKMQMGSGEY------LNKACPKDDFPLPRIDQLVDATAGCELMSFL 555

Query: 508  DAYSGYNQIMMHPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNM 567
            DAYSGY+Q+ M   DEE  + +T    YCY  MPFGLKNAGAT+ RL+ K+ + Q+GRN+
Sbjct: 556  DAYSGYHQVFMVKEDEEKPSLITPFGTYCYIRMPFGLKNAGATFARLICKVLANQLGRNV 615

Query: 568  EVYVDDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIE 627
            E YVDD++VKS +A  HG DL+E F+ LR + +KLNPEKC FG++ GK LGF+++ RGIE
Sbjct: 616  EAYVDDIVVKSKKAFTHGKDLQETFENLRKFSVKLNPEKCMFGVRVGKLLGFLVSKRGIE 675

Query: 628  VNPDKGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEE 687
             NPDK  AI +M+ P + +E+QRLTGRMA+LSRFL  + ++  PFF  L+  + F+W EE
Sbjct: 676  ANPDKIAAIQQMEPPKNTREMQRLTGRMASLSRFLSKSAERGLPFFKTLRAVNNFKWNEE 735

Query: 688  CEQAFTKLKETLATLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQEEGKKQKVIYFVSHTL 747
            C++AF  LK+ L  +P LS P  G PL+LY+A T   VS VL+QE+G KQ  +YFVS  L
Sbjct: 736  CQKAFDDLKDYLHNMPTLSSPQKGEPLLLYVAATPVTVSAVLVQEQGNKQMPVYFVSEAL 795

Query: 748  QGAELRYQKIEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVE 807
            QG + RY ++EK   AI+  +R+LR YF S  + + +  P+ +VL   +++GR+  W++E
Sbjct: 796  QGPKTRYIEVEKMIYAIVMASRKLRHYFLSHDITIPSTYPIGEVLSNKEIAGRIAKWAME 855

Query: 808  LSEYDIQYEPRGQVTVQSLIDFVAELTPTEGEKTQGE---WVLSVDGSSNNTGSGAGITI 864
            L  +D++Y  R  +  Q L  FV E TPTE EK + E   W +  DG+ N TG+GA   +
Sbjct: 856  LLPFDLKYTSRTAIKSQVLAKFVVEWTPTELEKKEEEEKPWTVFSDGACNATGAGAAAVV 915

Query: 865  ESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEY 924
            ++P K  ++ S +  F ++NN +EYE ++  +R +  LG ++L IK DS+LV       +
Sbjct: 916  KTPMKQTLKYSARLNFPSTNNTAEYEGVLLAMRKSRALGARRLIIKTDSKLVAGHFSKTF 975

Query: 925  QVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETL 984
            + ++  ++KYLE  R        I ++ + R +N  AD L K A+ G+    +    E L
Sbjct: 976  EAREEIMTKYLEEARLNERHFLGITVKAITREENGEADELTKAAAAGQ--PLENSFFEIL 1033

Query: 985  PRPSIDLVEIKLKVVKSVNEGELPWMESIKTFL-ENPPKEDDLNTRTKRREASFYTLVDG 1043
              PS D      K V  + E  L W + I  FL  N   E +   R  +  A  Y ++DG
Sbjct: 1034 EHPSYD-----KKEVICIQEEGLDWRDPILKFLVSNKLPEKEEEARRVQLMARKYKVIDG 1088

Query: 1044 ELYRRGIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCL 1103
            +LY+ G+ +P+LKCV  ++ + ++ E+HEG+C +H   RS+A KVIR G YWPT+ KD  
Sbjct: 1089 QLYKSGVTAPLLKCVTKEEGMQMVVEIHEGICGAHQAPRSVASKVIRQGIYWPTIMKDTE 1148

Query: 1104 EYVKKCEKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYF 1163
            +Y+K C  CQ      KAPP+EL  +   WPF  WG DI+GP P AK  ++++IVA++YF
Sbjct: 1149 QYIKTCRACQKVGSSSKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYF 1208

Query: 1164 TKWIEAEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMR 1223
            ++WIEAEAVA IT+A ++ F+W+ I+CRFG+P  +V DNG QF S   ++ C  + +++ 
Sbjct: 1209 SRWIEAEAVARITSAAMQKFVWKNIICRFGIPKEIVCDNGKQFESEKFKDLCQGLHLKIN 1268

Query: 1224 FASVEHPQTNGQAESANKVILKGLKKKLD-EAKGLWAEELPGVLWAYNTTEQSSTKETPY 1282
            FASV HPQTNG  E AN  +++ +KK+L+  +KG W E+L  VLWA  TT   +T  TP+
Sbjct: 1269 FASVGHPQTNGAVERANGKVVEAIKKRLEGSSKGKWPEDLLSVLWALRTTVVWATGMTPF 1328

Query: 1283 RLTYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVAR 1342
            RL YG + M   E+   S RV  + E++ G  +  +L ML E + EA  + EA      +
Sbjct: 1329 RLVYGDEPMTPSEVGVNSPRVIFYQEDEQGRKV--SLEMLDEIRVEALQKMEAYTEGTRK 1386

Query: 1343 KFSTKVVPRKMRVGDLVL*KNTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVP 1402
            +++ KV PR +  GDLVL K        KL   W GP+ +   +   AYKL  L G+++ 
Sbjct: 1387 QYNKKVRPRNIEEGDLVLKKVLNEVAVGKLESKWEGPFIVRKKMEIGAYKLAHLDGEELN 1446

Query: 1403 RTWNASHLKQYF 1414
             TWNA  LK+++
Sbjct: 1447 HTWNAISLKKFY 1458


>gb|AAD11615.1| prpol [Zea mays] gi|7489805|pir||T14595 polyprotein - maize
            retrotransposon Cinful-1
          Length = 1317

 Score =  914 bits (2361), Expect = 0.0
 Identities = 494/1283 (38%), Positives = 750/1283 (57%), Gaps = 42/1283 (3%)

Query: 152  NHSPIIFTPQDFAHVIPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKE 211
            +H PI F+ +D        ND +V++  +  ++   V +D GS+ADII+  AF ++   E
Sbjct: 56   SHIPITFSQEDLQLKDYPHNDAMVISCVIKGFLVHNVLVDTGSAADIIFAKAFRQMQELE 115

Query: 212  SNLKPYKGTLVGFTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDT 271
              +      L GF G ++   G + +   FG     +  QV + ++     YN ++GR T
Sbjct: 116  DKIHDATHPLCGFGGRQIVALGKITMSVTFGFINNTRTEQVVFDIVDMEYPYNAIIGRGT 175

Query: 272  LNKVCAVISTAHLTVKYPACNGKVGILRVDQNAARECYLRSVALYGRKAAKESHRITEIF 331
            LN   A++  A+L +K P+  G + I    Q AAR       A      +K  H I    
Sbjct: 176  LNAFEAILHPAYLCMKMPSDQGPIAI-HGSQEAARR------AEGNWTDSKAIHNIDGAE 228

Query: 332  PQEGFSLDPRDEADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFA 391
              E +       A   +P+P+   + +   ++ + +GS L+ EQE  LI  L +N D+FA
Sbjct: 229  ACEXYKFRREKAASADQPKPMLLCEDIA--EQKVLLGSQLSEEQEKTLIRFLFNNKDVFA 286

Query: 392  WTINDVPGIDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQY 451
            W+ ND+ G++  VI H L + P   P  Q +R+MS++K +  + E ++L+ A  IREV+Y
Sbjct: 287  WSANDLCGVNRDVIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKY 346

Query: 452  PTWLANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYS 511
            P WLAN VMVKKANGKWRMC D+T LNK CPKD +PLP +D LVD  + +EL+SL+D YS
Sbjct: 347  PEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYS 406

Query: 512  GYNQIMMHPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYV 571
            GY+QI M   DE  T+F+T    YCY  MP GLKNAG ++ R+  K+   Q+GRN+  YV
Sbjct: 407  GYHQIWMKREDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYV 466

Query: 572  DDMIVKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPD 631
            DD+IVKS +  +H  DL+E F   R   +KLNPEKC FG++ GKFLG +++++GIE NP 
Sbjct: 467  DDIIVKSTKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPS 526

Query: 632  KGRAILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQA 691
            K  AIL M+ PT+ K  QRLTGR+A+L+RF+  + ++  PFF  LK    FQW    ++A
Sbjct: 527  KIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKA 586

Query: 692  FTKLKETLATLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQE----EGKKQKVIYFVSHTL 747
            F +LK+ L  L  L+ P PG PL+LY+A +  AVS  L+QE    + +KQ  +YFVS  L
Sbjct: 587  FEELKQYLIDLTALTPPMPGAPLLLYVAASHSAVSAALVQEKLDGQTRKQVPVYFVSEVL 646

Query: 748  QGAELRYQKIEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVE 807
              ++  Y ++EK    +L  +R+LR YFQ++ + V +  PL+ +++  + +GR+  W+ E
Sbjct: 647  SISKKNYTELEKVLYVVLMASRKLRHYFQAYNIIVPSSQPLKDIMRNREATGRIGKWAAE 706

Query: 808  LSEYDIQYEPRGQVTVQSLIDFVAELTP----TEGEKTQGEWVLSVDGSSNNTGSGAGIT 863
            L+E+ I+Y  R  +  Q+L DF+A+ TP     E  K    W +  DGS    G+GA   
Sbjct: 707  LNEFCIEYVHRSSIQSQALADFIADWTPGAQEEEANKDTEAWTVFCDGSWGTFGAGAAAV 766

Query: 864  IESPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGE 923
            + SP K+      K +F  +NN +EYEAL+ GLR    +G+++  +K DSQ+V   +   
Sbjct: 767  LVSPSKVKTCYVAKLDFSCTNNIAEYEALLLGLRKLKAMGIRRAVLKTDSQVVSGHIDKS 826

Query: 924  YQVKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQET 983
             + KDP+L KYL++VRR+    +   ++++PRGQNE AD+LAK A+ G L     V  ET
Sbjct: 827  CKAKDPKLEKYLDMVRRVEASFEGFSVKNIPRGQNEHADLLAKSAAQG-LPLPSDVFFET 885

Query: 984  LPRPSIDLVEIKLKVVKSVNEGELPWMESIKTFLENPPKEDD--LNTRTKRREASFYTLV 1041
            +  PS++L+E  +  +  V   +  W   I ++L+     DD   N R + R A  Y ++
Sbjct: 886  IKAPSVELLERAVLNISPVYSED--WRTEIISYLQGKFLSDDEAYNRRIEAR-ARPYVMI 942

Query: 1042 DGELYRRGIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKD 1101
            +GELY+ G+ +P+LKC+   + + +M E+H G+C SHIG R L  K+ R GFYWP    D
Sbjct: 943  EGELYKHGVCAPLLKCLSRTEGIELMKEIHAGLCGSHIGSRPLLGKIFRQGFYWPKAASD 1002

Query: 1102 CLEYVKKCEKCQVFSDLHKAPPEELTTMMAP-WPFAMWGTDILGPFPVAKAQMKYIIVAV 1160
              E V+KCE CQ  +   K  P  LT ++ P WP   WG D+LGP P A+  ++Y++VAV
Sbjct: 1003 AAELVQKCEGCQKCARDQK-QPSSLTQLIQPIWPLQRWGLDLLGPLPPAQGNLRYVVVAV 1061

Query: 1161 DYFTKWIEAEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGI 1220
            +YF+KWIEA+ +ATIT+A V+ F WQ IVCRFGVP A+ +DNGTQF S   R+FC ++G 
Sbjct: 1062 EYFSKWIEAKPLATITSATVQKFFWQNIVCRFGVPKAITVDNGTQFDSEAFRDFCDQIGT 1121

Query: 1221 EMRFASVEHPQTNGQAESANKVILKGLKKKL-DEAKGLWAEELPGVLWAYNTTEQSSTKE 1279
            ++ FASV HP++NG  E AN +I+ G+ K + ++ +G W ++L  V+W++NTT   ST  
Sbjct: 1122 KIHFASVRHPESNGLVERANGIIMTGIMKSIFNQPRGKWPDQLTKVVWSHNTTTSRSTGF 1181

Query: 1280 TPYRLTYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVK 1339
            TP++L +G +A+   E +  S RV     + +  +         E+     IR +A  V+
Sbjct: 1182 TPFKLLFGDEAITPEEAKTGSIRVVASAASGSEADYSV------EKDALEGIRLQA--VE 1233

Query: 1340 VARKFSTKVV---PRKMRVGDL-----VL*KNTIPDKHNKLSPNWGGPYRIIGDVGGEAY 1391
               K+  + +    RK+R+ ++        +   P+   KL   W GP+ +       +Y
Sbjct: 1234 NINKYQAETIKWRDRKVRLKNIEPDTWCFRRVANPETVGKLQLKWDGPFLVASSSRPGSY 1293

Query: 1392 KLEQLSGQKVPRTWNASHLKQYF 1414
            +L+ + G  +PR+WNA  L++Y+
Sbjct: 1294 RLKDMDGNDIPRSWNADELRRYY 1316


>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
          Length = 1027

 Score =  899 bits (2324), Expect = 0.0
 Identities = 453/1025 (44%), Positives = 642/1025 (62%), Gaps = 10/1025 (0%)

Query: 399  GIDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANV 458
            GI P + +H+L +   A PV Q +RR   ++ + ++ E +KL++A FIREV YP WLANV
Sbjct: 3    GIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLANV 62

Query: 459  VMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMM 518
            V+V K  GKWR+C DYT+LN  CPKDS+PLP +D++VD  SG  +LS +DA+SGY+QI M
Sbjct: 63   VVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQIPM 122

Query: 519  HPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKS 578
             P DEE  AF+T    YCYK MPFGLKNAGATYQRLM KIF   +G ++EVY+DD++VKS
Sbjct: 123  SPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVVKS 182

Query: 579  ARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILE 638
                 H   L+E F  LR Y MKLNP KC+FG+   KFLGFM++ RGIEV+PD+ +A++E
Sbjct: 183  KTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAVME 242

Query: 639  MKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKET 698
               P + KE+QRLTG++ AL RF+    D+  PFF  ++K     WT+ C+ A  ++K  
Sbjct: 243  TPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIKHY 302

Query: 699  LATLPVLSKPTPGVPLVLYLAVTDKAVSTVLLQ-EEGKKQKVIYFVSHTLQGAELRYQKI 757
            L   P+LS P P   L +YLAV++ A+S VL +    K+QK IY+VS  L   E RY K+
Sbjct: 303  LMQPPILSSPIPKEKLYMYLAVSEWAISAVLFRCPSPKEQKPIYYVSRALADVETRYSKM 362

Query: 758  EKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEP 817
            E  +LA+   A++LRPYFQ+  V V TD PLR +L KPDL+GR++ W++ELSE+ I+++P
Sbjct: 363  ELISLALRSAAQKLRPYFQAHPVIVLTDQPLRNILHKPDLTGRMLQWAIELSEFGIEFQP 422

Query: 818  RGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIE 873
            R  +  Q + DFV E +      EG + +  W L VDG+S ++GSG G+ ++SP    +E
Sbjct: 423  RLSMKGQVMADFVLEYSRKPGQHEGSRKKEWWTLRVDGASRSSGSGVGLLLQSPTGEHLE 482

Query: 874  QSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSK 933
            Q+++  F ASNN++EYEA+++GL LA+ L V KL I  DSQLVVK V+ EY+ KD ++++
Sbjct: 483  QAIRLGFSASNNEAEYEAILSGLDLALALSVSKLRIFSDSQLVVKHVQEEYEAKDARMAR 542

Query: 934  YLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVE 993
            YL  VR  + +  E  IE + R  N RAD LA +A++  +     +       PS+  + 
Sbjct: 543  YLAKVRNTLQQFTEWTIEKIKRADNRRADALAGIAASLSIKEAILLPIHVQTNPSVSEIS 602

Query: 994  IKLKVVKSVNEGELPWMESIKTFLENPPKEDDLNTRTK-RREASFYTLVDGELYRRGIMS 1052
            I     ++    +  WM  I  ++       D     K R +A+ +TL+ G LY+R    
Sbjct: 603  I-CSTTEAPQADDQEWMNDITEYIRTGTLPGDPKQAHKVRVQAARFTLIGGHLYKRSFTG 661

Query: 1053 PMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKC 1112
            P L+C+   +A  ++AE+HEG+  +H GGRSLA +    G+YWPTMKK+   YVK+C+KC
Sbjct: 662  PYLRCLGHSEAQYVLAELHEGIYGNHSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKC 721

Query: 1113 QVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAV 1172
            Q ++ +   P   L ++  PWPFA WG DI+ P P A AQ K+++VA DYF+KW+EAEA 
Sbjct: 722  QRYAPIPHMPSTTLKSISGPWPFAQWGMDIVRPLPTAPAQKKFLLVATDYFSKWVEAEAY 781

Query: 1173 ATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQT 1232
            A+     V  F+W+ I+CRFG+P  ++ DNG QF S   R FC+E+ I   +++  +PQ+
Sbjct: 782  ASTKDKDVTKFVWKNIICRFGIPQTIIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQS 841

Query: 1233 NGQAESANKVILKGLKKKLDEAKGLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAML 1292
            NGQAE+ NK ++  LKK+L++AKG W EELPGVLWAY TT    T  TP+ L YG DA++
Sbjct: 842  NGQAEATNKTLITALKKRLEQAKGKWVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVI 901

Query: 1293 SVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKVVPRK 1352
             +EI   +       ++D    L  NL    E +  A IR    + + +  ++ KV PR 
Sbjct: 902  PIEIGLPTIWTNAAKQSDANMQLGRNLDWTDEVRESASIRMADYQQRASAHYNRKVRPRS 961

Query: 1353 MRVGDLVL*K---NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNASH 1409
            ++ G LVL K   NT      K   NW GPY +       AY L++L G  + R WN S+
Sbjct: 962  LKNGTLVLRKFFENTTEVGAGKFQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSN 1021

Query: 1410 LKQYF 1414
            LKQY+
Sbjct: 1022 LKQYY 1026


>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
            gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
            (japonica cultivar-group)]
          Length = 2013

 Score =  872 bits (2252), Expect = 0.0
 Identities = 518/1390 (37%), Positives = 766/1390 (54%), Gaps = 57/1390 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G   +     
Sbjct: 657  CPHHPNSNHVAKDCFVYKQFADQYTKTA------RKNSDEEQSTSRKKDDG---DTPAGF 707

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 708  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 766

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 767  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 826

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 827  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 886

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 887  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------- 938

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +     + ++ + + K K + +     T+          +N D+FAW  +D+PGI  
Sbjct: 939  ---EVPATKISKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIPR 987

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 988  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 1047

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 1048 KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 1107

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1108 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1167

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1168 DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 1227

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 1228 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEP 1287

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +
Sbjct: 1288 PVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQ 1347

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   +++GR+  W++EL   DI ++
Sbjct: 1348 VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREVNGRIAKWALELMSLDISFK 1407

Query: 817  PRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T  + E T  E    W +  DGS   +G+GAG+ + SP    +
Sbjct: 1408 PRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERL 1466

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  + 
Sbjct: 1467 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSYLDDNMM 1526

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
             Y + VR+L  +   +++ HV R  NE AD LA   S  R      V  E L  P++   
Sbjct: 1527 AYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDVFVEHLYTPTVPHK 1585

Query: 993  E-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +  ++         E+ W E +  FL  +  P++ D   R  RR +  Y L + ELY++ 
Sbjct: 1586 DTTQVAGTHDAAMVEVDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVLHEAELYKKS 1644

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1645 PSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1704

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1705 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEA 1764

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV H
Sbjct: 1765 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAH 1823

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L 
Sbjct: 1824 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLV 1883

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  +
Sbjct: 1884 YGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHN 1943

Query: 1346 TKVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRT 1404
              V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +
Sbjct: 1944 RNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNS 2002

Query: 1405 WNASHLKQYF 1414
            WN  HL++++
Sbjct: 2003 WNIEHLRRFY 2012


>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
            gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
            sativa (japonica cultivar-group)]
          Length = 2010

 Score =  870 bits (2247), Expect = 0.0
 Identities = 518/1390 (37%), Positives = 768/1390 (54%), Gaps = 57/1390 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G   +     
Sbjct: 654  CSHHPNSNHVAKDCFVYKQFADQYTKTA------RKNSDEEQSTSRKKDDG---DTPAGF 704

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 705  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 763

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 764  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPHSELKPSNAPFHGVIP 823

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 824  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 883

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG   +P  
Sbjct: 884  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEGE--EPAT 940

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
            +        + ++ + + K K + +      +  D   T   +N D+FAW  +D+PGI  
Sbjct: 941  K--------ISKSGESEAKTKKIPL------DPSDPAKT--ANNKDIFAWKPSDMPGIPR 984

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 985  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 1044

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 1045 KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLKESD 1104

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1105 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1164

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK +GFM++ RGI+ NP+K  AIL MK P
Sbjct: 1165 DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNMKPP 1224

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 1225 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEP 1284

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +
Sbjct: 1285 PVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQ 1344

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++
Sbjct: 1345 VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFK 1404

Query: 817  PRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T  + E T  E    W +  DGS   +G+GAG+ + SP    +
Sbjct: 1405 PRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERL 1463

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  + 
Sbjct: 1464 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMM 1523

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
             Y + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   
Sbjct: 1524 AYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHK 1582

Query: 993  E-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +  ++     V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++ 
Sbjct: 1583 DTTQVAGTHDVAMVETDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKS 1641

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1642 PSGILQRCVSLEEGRQLLQDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1701

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1702 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEA 1761

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV H
Sbjct: 1762 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAH 1820

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L 
Sbjct: 1821 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLV 1880

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  +
Sbjct: 1881 YGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHN 1940

Query: 1346 TKVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRT 1404
              V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +
Sbjct: 1941 RNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNS 1999

Query: 1405 WNASHLKQYF 1414
            WN  HL++++
Sbjct: 2000 WNIEHLRRFY 2009


>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
            gi|37531820|ref|NP_920212.1| putative gag-pol precursor
            [Oryza sativa (japonica cultivar-group)]
            gi|22128689|gb|AAM92802.1| putative gag-pol precursor
            [Oryza sativa (japonica cultivar-group)]
          Length = 2017

 Score =  869 bits (2245), Expect = 0.0
 Identities = 513/1389 (36%), Positives = 765/1389 (54%), Gaps = 55/1389 (3%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G   + +   
Sbjct: 661  CPHHPNSNHVAKDCFVYKQFADQYTKTA------RKNSDEEQSTSRKKDDG---DTLAGF 711

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 712  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 770

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 771  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 830

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 831  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 890

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 891  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------- 942

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +     + ++ + + K K + +     T+          +N D+FAW  +D+PGI  
Sbjct: 943  ---EVPATKISKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIPR 991

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 992  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 1051

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 1052 KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 1111

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1112 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1171

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1172 DLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 1231

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 1232 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEP 1291

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +
Sbjct: 1292 PVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQ 1351

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   D+ ++
Sbjct: 1352 VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDLSFK 1411

Query: 817  PRGQVTVQSLIDFVAELTPTEGE---KTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIE 873
            PR  +  Q+L DFVAE T  + +   K    W +  DGS   +G+GAG+ + SP    + 
Sbjct: 1412 PRISIKSQALADFVAEWTECQEDTTVKKMEHWTMHFDGSKRLSGTGAGVVLISPTGERLS 1471

Query: 874  QSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSK 933
              L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  +  
Sbjct: 1472 YVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMKA 1531

Query: 934  YLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVE 993
            Y + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   +
Sbjct: 1532 YRQEVRKLEDKFDGLELSHVLRHDNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHKD 1590

Query: 994  -IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRGI 1050
              +   +  V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++  
Sbjct: 1591 TTQAAGIHDVAMVETDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKSP 1649

Query: 1051 MSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCE 1110
               + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ CE
Sbjct: 1650 SGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCE 1709

Query: 1111 KCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAE 1170
             CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA+
Sbjct: 1710 GCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAK 1769

Query: 1171 AVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHP 1230
             V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV HP
Sbjct: 1770 PVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHP 1828

Query: 1231 QTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLTY 1286
             +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L Y
Sbjct: 1829 MSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVY 1888

Query: 1287 GTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFST 1346
            G +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  + 
Sbjct: 1889 GAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNR 1948

Query: 1347 KVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTW 1405
             V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +W
Sbjct: 1949 NVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSW 2007

Query: 1406 NASHLKQYF 1414
            N  +L++++
Sbjct: 2008 NIEYLRRFY 2016


>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
            gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
            (japonica cultivar-group)]
          Length = 1950

 Score =  869 bits (2245), Expect = 0.0
 Identities = 516/1390 (37%), Positives = 761/1390 (54%), Gaps = 57/1390 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G   +     
Sbjct: 594  CPHHPNSNHVAKDCFVYKQFADQYTKTA------RKNSDEEQSTSRKKDDG---DTPAGF 644

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 645  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 703

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 704  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 763

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 764  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 823

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 824  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------- 875

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +       ++ + + K K + +     T+          +N D+FAW  +D+PGI  
Sbjct: 876  ---EIPATKTSKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIPR 924

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 925  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 984

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 985  KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 1044

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1045 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1104

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1105 DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 1164

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 1165 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEP 1224

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            P+L+ P P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +
Sbjct: 1225 PILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQ 1284

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++
Sbjct: 1285 VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFK 1344

Query: 817  PRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T  + E T  E    W +  DGS   +G+GAG+ + SP    +
Sbjct: 1345 PRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERL 1403

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  + 
Sbjct: 1404 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMM 1463

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
             Y + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   
Sbjct: 1464 AYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREMAP-SDVFVEHLYTPTVPHK 1522

Query: 993  EIKLKV-VKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +         V   E  W E    FL  +  P++ D   R  RR +  Y + + ELY++ 
Sbjct: 1523 DTTQDADTHDVALVEADWREPFIRFLTSQELPQDKDEAERISRR-SKLYAMHEAELYKKS 1581

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1582 PSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1641

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1642 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEA 1701

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV H
Sbjct: 1702 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAH 1760

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L 
Sbjct: 1761 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLV 1820

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  +
Sbjct: 1821 YGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1880

Query: 1346 TKVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRT 1404
              V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +
Sbjct: 1881 RNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNS 1939

Query: 1405 WNASHLKQYF 1414
            WN  HL++++
Sbjct: 1940 WNIEHLRRFY 1949


>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 2012

 Score =  869 bits (2245), Expect = 0.0
 Identities = 521/1397 (37%), Positives = 766/1397 (54%), Gaps = 71/1397 (5%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K                 K T E++   ++  ++ 
Sbjct: 656  CPHHPNSNHVAKDCFVYKQFADQYTKTAR--------------KNTDEEQSTSRK--KDD 699

Query: 108  GD-PVG------ECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTP 160
            GD P G      E + I GG      S R +K     +++VQ         +   I F  
Sbjct: 700  GDTPAGFQDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDR 758

Query: 161  QDFA-HVIPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKG 219
             D    V+     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP   
Sbjct: 759  SDHPDRVVHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNA 818

Query: 220  TLVG-FTGDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAV 278
               G   G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV
Sbjct: 819  PFHGVIPGLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAV 878

Query: 279  ISTAHLTVKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEG 335
                ++ +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG
Sbjct: 879  PHYTYMMMKMPGPRGVLS-LRSDVKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG 937

Query: 336  FSLDPRDEADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTIN 395
                      +       ++ + + K K + +     T+          +N D+FAW  +
Sbjct: 938  ----------EIPATKTSKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPS 979

Query: 396  DVPGIDPKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWL 455
            D+PGI  +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WL
Sbjct: 980  DMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWL 1039

Query: 456  ANVVMVKKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQ 515
            AN V+V+K  G+W MC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+Q
Sbjct: 1040 ANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQ 1099

Query: 516  IMMHPSDEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMI 575
            I +  SD   T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++
Sbjct: 1100 IRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVV 1159

Query: 576  VKSARASDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRA 635
            VK+ +  D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  A
Sbjct: 1160 VKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTA 1219

Query: 636  ILEMKSPTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKL 695
            IL MKSP++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   F+W  E ++AF   
Sbjct: 1220 ILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPEAQKAFEDF 1279

Query: 696  KETLATLPVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQG 749
            K+ L   PVL+ P P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  
Sbjct: 1280 KKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLAD 1339

Query: 750  AELRYQKIEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELS 809
            ++ RY +++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL 
Sbjct: 1340 SKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELM 1399

Query: 810  EYDIQYEPRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIE 865
              DI ++PR  +  Q+L DFVAE T  + E T  E    W +  DGS   +G+GAG+ + 
Sbjct: 1400 SLDISFKPRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLI 1458

Query: 866  SPDKMIIEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQ 925
            SP    +   L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+ 
Sbjct: 1459 SPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWS 1518

Query: 926  VKDPQLSKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLP 985
              D  +  Y + VR+L  +   +++ HV R  NE AD LA   S  R      V  E L 
Sbjct: 1519 CLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-REAAPSDVFVEHLY 1577

Query: 986  RPSIDLVE-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVD 1042
             P++   +  +      V   E  W E +  FL  +  P++ D   R  RR +  Y L +
Sbjct: 1578 SPTVPHKDATQAAGAHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVLHE 1636

Query: 1043 GELYRRGIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDC 1102
             ELY++     + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D 
Sbjct: 1637 AELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDA 1696

Query: 1103 LEYVKKCEKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDY 1162
             + V+ CE CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D 
Sbjct: 1697 DKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDK 1756

Query: 1163 FTKWIEAEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEM 1222
            F+KWIEA+ V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++
Sbjct: 1757 FSKWIEAKPVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKI 1815

Query: 1223 RFASVEHPQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTK 1278
             +ASV HP +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T 
Sbjct: 1816 CYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATG 1875

Query: 1279 ETPYRLTYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKV 1338
            ++P+ L YG +AML  E+E +S R   F E    E+ + +L  L E +  A IR+     
Sbjct: 1876 QSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEAREAALIRSARYLQ 1935

Query: 1339 KVARKFSTKVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLS 1397
             + R  +  V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  
Sbjct: 1936 GLRRYHNRNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKRED 1994

Query: 1398 GQKVPRTWNASHLKQYF 1414
            G  V  +WN  HL++++
Sbjct: 1995 GTLVDNSWNIEHLRRFY 2011


>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
            gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
            sativa (japonica cultivar-group)]
            gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
            sativa]
          Length = 2017

 Score =  863 bits (2231), Expect = 0.0
 Identities = 514/1391 (36%), Positives = 768/1391 (54%), Gaps = 59/1391 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  ++  K        +  +  E +   ++D G   +     
Sbjct: 661  CPHHPNSNHVAKDCFVYKQFAEQYTKT------TRKNSDEEQSTSRKKDDG---DTPAGF 711

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 712  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 770

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 771  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 830

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 831  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 890

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 891  MKLPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------- 942

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +     + ++ + + K K + +    +T+          +N D+FAW  +D+PGI  
Sbjct: 943  ---EVPATKISKSGESEAKTKKIPLDPSDSTKT--------ANNKDIFAWKPSDMPGIPR 991

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 992  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 1051

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 1052 KKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 1111

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1112 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1171

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1172 DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 1231

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   F W  E ++AF   K+ L   
Sbjct: 1232 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPEAQKAFEDFKKLLTEP 1291

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY++ T + VSTVL+   +E+G  QKV   IYFVS  L  ++ RY +
Sbjct: 1292 PVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIYFVSEVLADSKTRYPQ 1351

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++
Sbjct: 1352 VQKLLYGILITTRKLSHYFQGHLVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFK 1411

Query: 817  PRGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T     T  EK +  W +  DGS   +G+GAG+ + SP    +
Sbjct: 1412 PRISIKSQALADFVAEWTECQEDTPAEKVE-HWTMHFDGSKRLSGTGAGVVLISPTGERL 1470

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  + 
Sbjct: 1471 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMM 1530

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
             Y + VR+L  +   +++ HV R  N+ AD LA   S   +     V  E L  P++   
Sbjct: 1531 AYRQEVRKLEDKFDGLELSHVLRHNNKAADRLANFGSKREVAP-SDVFVEHLYAPTVPHK 1589

Query: 993  E-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +  ++     V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++ 
Sbjct: 1590 DTTQVAGTHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SRLYVMHEAELYKKS 1648

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1649 PSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1708

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1709 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAFGGYTHLFVAIDKFSKWIEA 1768

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNG QFT  V ++FC + GI++ +ASV H
Sbjct: 1769 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAH 1827

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W E+LP VLW+  TT   +T ++P+ L 
Sbjct: 1828 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLV 1887

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   F E    E+ + +L  L EE REA +   A  ++  R++ 
Sbjct: 1888 YGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRL-EEVREAALIQSARYLQGLRRYH 1946

Query: 1346 TK-VVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPR 1403
             + V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  +  
Sbjct: 1947 NRNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLIDN 2005

Query: 1404 TWNASHLKQYF 1414
            +WN  HL++++
Sbjct: 2006 SWNIEHLRRFY 2016


>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1756

 Score =  863 bits (2230), Expect = 0.0
 Identities = 516/1391 (37%), Positives = 767/1391 (55%), Gaps = 59/1391 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  ++  K        +  +  E +   ++D G   +     
Sbjct: 400  CPHHPNSNHVAKDCFVYKQFAEQYTKT------TRKNSDEEQSTSRKKDDG---DTPAGF 450

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 451  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 509

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 510  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 569

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 570  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 629

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P    +V  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 630  MKMPGPR-RVLSLRSDIKQAVTCDKESCDMAQTREMASAREDIRLAVATASEG------- 681

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +     + ++ + + K K + +    +T+          +N D+FAW  +D+PGI  
Sbjct: 682  ---EVPATKISKSGESEAKTKKIPLDPSDSTKT--------ANNKDIFAWKPSDMPGIPR 730

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR  +++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 731  EVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 790

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 791  KKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 850

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD+++K+ +  
Sbjct: 851  CLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTKQKD 910

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 911  DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 970

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 971  STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEP 1030

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +
Sbjct: 1031 PVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQ 1090

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++
Sbjct: 1091 VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFK 1150

Query: 817  PRGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T     T  EK +  W +  DGS   +G+GAG+ + SP    +
Sbjct: 1151 PRISIKSQALADFVAEWTECQEDTPAEKME-HWTMHFDGSKRLSGTGAGVVLISPTGERL 1209

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  + 
Sbjct: 1210 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMM 1269

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
             Y + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   
Sbjct: 1270 AYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHK 1328

Query: 993  E-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +  ++     V   E  W E    FL  +  P++ D   R  RR +  Y + + ELY++ 
Sbjct: 1329 DTTQIAGTHDVALVEADWREPFIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKS 1387

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1388 PSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1447

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1448 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEA 1507

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNG QFT  V ++FC + GI++ +ASV H
Sbjct: 1508 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAH 1566

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L 
Sbjct: 1567 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLV 1626

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   F E    E+ + +L  L EE REA +   A  ++  R++ 
Sbjct: 1627 YGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRL-EEVREAALIQSARYLQGLRRYH 1685

Query: 1346 TK-VVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPR 1403
             + V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  
Sbjct: 1686 NRNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1744

Query: 1404 TWNASHLKQYF 1414
            +WN  HL++++
Sbjct: 1745 SWNIEHLRRFY 1755


>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
            putative gag-pol precursor [Oryza sativa]
          Length = 2026

 Score =  863 bits (2230), Expect = 0.0
 Identities = 494/1265 (39%), Positives = 723/1265 (57%), Gaps = 48/1265 (3%)

Query: 173  PIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FTGDRVSV 231
            P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   G   + 
Sbjct: 777  PLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIPGLSATP 836

Query: 232  RGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLTVKYPAC 291
             G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ +K P  
Sbjct: 837  LGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGP 896

Query: 292  NGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRDEADDFR 348
             G +  LR D   A  C   S  +   +   +A+E  R+      EG          +  
Sbjct: 897  RGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG----------EVP 945

Query: 349  PQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDPKVITHK 408
                 ++ + + K K + +     T+          +N D+FAW  +D+PGI  +VI H 
Sbjct: 946  ATKTSKSGESEAKTKKIPLDPSNPTKT--------ANNKDIFAWKPSDMPGIPREVIEHS 997

Query: 409  LAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVKKANGKW 468
            L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+K  G+W
Sbjct: 998  LHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVHHPDWLANPVLVRKKTGQW 1057

Query: 469  RMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSDEESTAF 528
            RMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD   T+F
Sbjct: 1058 RMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSF 1117

Query: 529  MTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARASDHGGDL 588
            +T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  D   DL
Sbjct: 1118 ITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDL 1177

Query: 589  KEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSPTSVKEV 648
            +E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P++ K+V
Sbjct: 1178 EETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDV 1237

Query: 649  QRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATLPVLSKP 708
            Q+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   PVL+ P
Sbjct: 1238 QKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASP 1297

Query: 709  TPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQKIEKAAL 762
             P  PL+LY++ T + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +++K   
Sbjct: 1298 HPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLY 1357

Query: 763  AILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRGQVT 822
             IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++PR  + 
Sbjct: 1358 GILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIK 1417

Query: 823  VQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQSLKF 878
             Q+L DFVAE T     T  EK +  W +  DGS   +G+GAG+ + SP    +   L  
Sbjct: 1418 SQALADFVAEWTECQEDTPAEKME-HWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWI 1476

Query: 879  EFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYLEVV 938
             F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  +  Y + V
Sbjct: 1477 HFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEV 1536

Query: 939  RRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVE-IKLK 997
            R+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   +  ++ 
Sbjct: 1537 RKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHKDTTQVA 1595

Query: 998  VVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRGIMSPML 1055
                V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++     + 
Sbjct: 1596 GTHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKSPSGILQ 1654

Query: 1056 KCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKCQVF 1115
            +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ CE CQ F
Sbjct: 1655 RCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFF 1714

Query: 1116 SDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAVATI 1175
            +     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA+ V TI
Sbjct: 1715 ARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTI 1774

Query: 1176 TAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQTNGQ 1235
            TA    +F +  IV RFGVP  ++ DNG QFT  V ++ C + GI++ +ASV HP +NGQ
Sbjct: 1775 TADNAPDF-FINIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQ 1833

Query: 1236 AESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLTYGTDAM 1291
             E AN +IL+G+K ++ D  K   G W E+LP VLW+  TT   +T ++P+ L YG +AM
Sbjct: 1834 VERANGMILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAM 1893

Query: 1292 LSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTK-VVP 1350
            L  E+E +S R   F E    E+ + +L  L EE REA +   A  ++  R++  + V  
Sbjct: 1894 LPSEVEFESLRFRNFREERYEEDRVDDLHRL-EEVREAALIQSARYLQGLRRYHNRNVRS 1952

Query: 1351 RKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNASH 1409
            R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +WN  H
Sbjct: 1953 RAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEH 2011

Query: 1410 LKQYF 1414
            L++++
Sbjct: 2012 LRRFY 2016


>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
            gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
            sativa (japonica cultivar-group)]
            gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
            sativa (japonica cultivar-group)]
          Length = 2017

 Score =  858 bits (2217), Expect = 0.0
 Identities = 514/1391 (36%), Positives = 766/1391 (54%), Gaps = 59/1391 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  R+  ++  K        +  +  E +   ++D G   +     
Sbjct: 661  CPHHPNSNHVAKDCFVYRQFAEQYTKT------TRKNSDEEQSTSRKKDDG---DTPAGF 711

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 712  QDHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 770

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 771  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 830

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 831  GLSATPLGQITLPVTFGTRENFRTENISFEVDDFETAYHAILGRPALAKFMAVPHYTYMM 890

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 891  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------- 942

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +     + ++ + + K K + +    +T+          +N D+FAW  +D+PGI  
Sbjct: 943  ---EVPATKISKSGESEAKTKKIPLDPSDSTKT--------ANNKDIFAWKPSDMPGIPR 991

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 992  EVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 1051

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LN  CPKD + LP +D++VD  +G ELLS +D Y GY+QI +  SD
Sbjct: 1052 KKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFLDCYLGYHQIRLKESD 1111

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1112 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1171

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1172 DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKITAILNMKPP 1231

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  + ++AF   K+ L   
Sbjct: 1232 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPDAQKAFEDFKKLLTEP 1291

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY+A   + VSTVL+   +EEG  QKV   IYFVS  L  ++ RY +
Sbjct: 1292 PVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQ 1351

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQS  V V T   L  +L   + +GR+  W++EL   DI ++
Sbjct: 1352 VQKLLYGILITTRKLSHYFQSHSVTVVTSFSLGDILHNREANGRIAKWALELMSLDISFK 1411

Query: 817  PRGQVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T     T  EK +  W +  DGS   +G+GAG+ + SP    +
Sbjct: 1412 PRISIKSQALADFVAEWTECQEDTPAEKME-HWTMHFDGSKRLSGTGAGVVLISPTGERL 1470

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  + 
Sbjct: 1471 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMM 1530

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
             Y + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   
Sbjct: 1531 AYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPHK 1589

Query: 993  E-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +  ++     V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++ 
Sbjct: 1590 DTTQIAGTHDVALVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKS 1648

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1649 PSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1708

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1709 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEA 1768

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNG QFT  V ++FC + GI++ +ASV H
Sbjct: 1769 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAH 1827

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L 
Sbjct: 1828 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLV 1887

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   + E    E+ + +L  L EE REA +   A  ++  R++ 
Sbjct: 1888 YGAEAMLPSEVEFESLRFRNYREERYEEDRVDDLHRL-EEVREAALIQSARYLQGLRRYH 1946

Query: 1346 TK-VVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPR 1403
             + V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  
Sbjct: 1947 NRNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISDVTRPGSYRLKREDGTLVDN 2005

Query: 1404 TWNASHLKQYF 1414
            +WN  HL++++
Sbjct: 2006 SWNIEHLRRFY 2016


>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
            gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
            (japonica cultivar-group)]
          Length = 2008

 Score =  858 bits (2216), Expect = 0.0
 Identities = 515/1391 (37%), Positives = 759/1391 (54%), Gaps = 64/1391 (4%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G      +  
Sbjct: 657  CPHHPNSNHVAKDCFVYKQFADQYTKTA------RKNSDEEQSTSRKKDDGDAPAGFQ-- 708

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 709  -DHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 766

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 767  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 826

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 827  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 886

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVAL---YGRKAAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 887  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAHTHEMASAREDIRLAAATASEG------- 938

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIG-SGLTTEQEDRLITLLGDNLDLFAWTINDVPGID 401
               +       ++ + + K K + +  S  T   E  LIT L +N D+FAW  +D+PGI 
Sbjct: 939  ---EIPVTKTSKSGESEAKTKKIPLDPSDPTKTAESALITFLQNNKDIFAWKPSDMPGIP 995

Query: 402  PKVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMV 461
             +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V
Sbjct: 996  REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLV 1055

Query: 462  KKANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPS 521
            +K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  S
Sbjct: 1056 RKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKES 1115

Query: 522  DEESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARA 581
            D   T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ + 
Sbjct: 1116 DCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQK 1175

Query: 582  SDHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKS 641
             D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK 
Sbjct: 1176 DDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKP 1235

Query: 642  PTSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLAT 701
            P++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L  
Sbjct: 1236 PSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTE 1295

Query: 702  LPVLSKPTPGVPLVLYLAVTDKAVSTVLL---QEEGKKQKV---IYFVSHTLQGAELRYQ 755
             PVL+ P P  PL+LY++ T + VSTVL    +EEG  QKV   IYFVS  L  ++ RY 
Sbjct: 1296 PPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGHVQKVQRPIYFVSEVLADSKTRYP 1355

Query: 756  KIEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQY 815
            +++K                    V V T  PL  +L   + +GR+  W++EL   DI +
Sbjct: 1356 QVQK--------------LLYGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISF 1401

Query: 816  EPRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMI 871
            +PR  +  Q+L DFVAE T  + E T  E    W +  DGS   +G+GAG+ + SP    
Sbjct: 1402 KPRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGER 1460

Query: 872  IEQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQL 931
            +   L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  +
Sbjct: 1461 LSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNM 1520

Query: 932  SKYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDL 991
              Y + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++  
Sbjct: 1521 MAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAP-SDVFVEHLYTPTVPH 1579

Query: 992  VE-IKLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRR 1048
             +  ++     V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++
Sbjct: 1580 KDTTQVAGTHDVAVVETDWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKK 1638

Query: 1049 GIMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKK 1108
                 + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ 
Sbjct: 1639 SPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRT 1698

Query: 1109 CEKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIE 1168
            CE CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIE
Sbjct: 1699 CEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIE 1758

Query: 1169 AEAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVE 1228
            A+ V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV 
Sbjct: 1759 AKPVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVA 1817

Query: 1229 HPQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRL 1284
            HP +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L
Sbjct: 1818 HPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFL 1877

Query: 1285 TYGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKF 1344
             YG +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  
Sbjct: 1878 VYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYH 1937

Query: 1345 STKVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPR 1403
            +  V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  
Sbjct: 1938 NRNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996

Query: 1404 TWNASHLKQYF 1414
            +WN  HL++++
Sbjct: 1997 SWNIEHLRRFY 2007


>gb|AAP52913.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
            gi|37532648|ref|NP_920626.1| putative retroelement [Oryza
            sativa (japonica cultivar-group)]
            gi|19881548|gb|AAM00949.1| Putative retroelement [Oryza
            sativa]
          Length = 1945

 Score =  849 bits (2193), Expect = 0.0
 Identities = 511/1390 (36%), Positives = 752/1390 (53%), Gaps = 75/1390 (5%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G      +  
Sbjct: 607  CPHHPNSNHVAKDCFVYKQFADQYTKTA------RKNSDEEQSTSRKKDDGDAPAGFQ-- 658

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 659  -DHRKELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRV 716

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 717  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 776

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 777  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 836

Query: 286  VKYPACNGKVGILRVDQNAARECYLRSVALYGRK---AAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S  +   +   +A+E  R+      EG       
Sbjct: 837  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQTREMASAREDIRLAAATASEG------- 888

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +       ++ + + K K + +     T+          +N D+FAW  +D+PGI  
Sbjct: 889  ---EIPATKTSKSGESEAKTKKIPLDPSDPTKT--------ANNKDIFAWKPSDMPGIPR 937

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 938  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 997

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 998  KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 1057

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1058 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRFFSTQIGRNVEAYVDDVVVKTKQKG 1117

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1118 DLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 1177

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 1178 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEP 1237

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLLQEE------GKKQKVIYFVSHTLQGAELRYQK 756
            PVL+ P P  PL+LY++ T + VSTVL+ E        K Q+ IYFVS  L  ++ RY +
Sbjct: 1238 PVLASPHPQEPLLLYVSATSQVVSTVLVVEREEECHVQKVQRPIYFVSEVLADSKTRYPQ 1297

Query: 757  IEKAALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYE 816
            ++K    IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++
Sbjct: 1298 VQKLLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFK 1357

Query: 817  PRGQVTVQSLIDFVAELTPTEGEKTQGE----WVLSVDGSSNNTGSGAGITIESPDKMII 872
            PR  +  Q+L DFVAE T  + E T  E    W +  DGS   +G+GAG+ + SP    +
Sbjct: 1358 PRISIKSQALADFVAEWTECQ-EDTPAENMEHWTMHFDGSKRLSGTGAGVVLISPTGERL 1416

Query: 873  EQSLKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLS 932
               L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV Q             
Sbjct: 1417 SYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQ------------- 1463

Query: 933  KYLEVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLV 992
                 VR+L  + + +++ HV R  NE AD LA   S  R      V  E L  P++   
Sbjct: 1464 -----VRKLEDKFEGLELSHVLRHNNEAADRLANFGSK-RETAPSDVFVEHLYTPTVPHK 1517

Query: 993  EIKLKV-VKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRG 1049
            +         V   E  W E    FL  +  P++ D   R  RR +  Y + + ELY++ 
Sbjct: 1518 DTTQDADTHDVAMVEADWREPFIRFLTSQELPQDKDEAERISRR-SKLYVMHESELYKKS 1576

Query: 1050 IMSPMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKC 1109
                + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ C
Sbjct: 1577 PSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTC 1636

Query: 1110 EKCQVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEA 1169
            E CQ F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA
Sbjct: 1637 EGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEA 1696

Query: 1170 EAVATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEH 1229
            + V TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV H
Sbjct: 1697 KPVVTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAH 1755

Query: 1230 PQTNGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLT 1285
            P +NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L 
Sbjct: 1756 PMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLV 1815

Query: 1286 YGTDAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFS 1345
            YG +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  +
Sbjct: 1816 YGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1875

Query: 1346 TKVVPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRT 1404
              V  R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +
Sbjct: 1876 RNVRSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNS 1934

Query: 1405 WNASHLKQYF 1414
            WN  HL++++
Sbjct: 1935 WNIEHLRRFY 1944


>emb|CAE02238.2| OSJNBb0054B09.2 [Oryza sativa (japonica cultivar-group)]
            gi|50922823|ref|XP_471772.1| OSJNBb0054B09.2 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1992

 Score =  843 bits (2177), Expect = 0.0
 Identities = 508/1387 (36%), Positives = 749/1387 (53%), Gaps = 71/1387 (5%)

Query: 48   CEYHKALGHTTDNCWNLRREIDRLIKAGHLANFVKDTATPEVAKITQEDKGKGKEIVEEL 107
            C +H    H   +C+  ++  D+  K        +  +  E +   ++D G      +  
Sbjct: 656  CPHHPNSNHVAKDCFIYKQFADQYTKT------TRKNSDEEQSTSKKKDDGDAPAGFQ-- 707

Query: 108  GDPVGECSSIAGGFGGGAISSRARKRYVATVHSVQESNEGECWVNHSPIIFTPQDFA-HV 166
             D   E + I GG      S R +K     +++VQ         +   I F   D    V
Sbjct: 708  -DHRTELNHIFGG-PLAYESKRKQKLTEREINAVQPDTPQYLRWSEIAIKFDRLDHPDRV 765

Query: 167  IPYDNDPIVVTIRVNNYVTKKVFLDQGSSADIIYGDAFDRLGLKESNLKPYKGTLVG-FT 225
            +     P+V+   V N   ++  +D GS+ +I++    D + +  S LKP      G   
Sbjct: 766  VHPGRYPLVLDPVVRNVKLRRTLIDGGSALNILFAKTLDDMQIPRSELKPSNAPFHGVIP 825

Query: 226  GDRVSVRGYVEIPTAFGEGEFVKKFQVKYLVLACRANYNVLLGRDTLNKVCAVISTAHLT 285
            G   +  G + +P  FG  E  +   + + V      Y+ +LGR  L K  AV    ++ 
Sbjct: 826  GLSATPLGQITLPVTFGTRENFRTENISFEVADFETAYHAILGRPALAKFMAVPHYTYMM 885

Query: 286  VKYPACNGKVGILRVDQNAARECYLRS---VALYGRKAAKESHRITEIFPQEGFSLDPRD 342
            +K P   G +  LR D   A  C   S     +    +A+E  R+      EG       
Sbjct: 886  MKMPGPRGVLS-LRSDIKQAVTCDKESCDMAQIREMASAREDIRLAAATASEG------- 937

Query: 343  EADDFRPQPLEETKQVQVKDKFLKIGSGLTTEQEDRLITLLGDNLDLFAWTINDVPGIDP 402
               +       ++ + + K K + + S   T+          +N D+FAW  +D+PGI  
Sbjct: 938  ---EIPATKTSKSGESEAKTKKIHLDSSDPTKT--------ANNKDIFAWKPSDMPGIPR 986

Query: 403  KVITHKLAIRPGATPVIQPMRRMSEEKHKAVQLETEKLIKARFIREVQYPTWLANVVMVK 462
            +VI H L ++  A P+ Q +RR ++++  A++ E  KL+ A FI+EV +P WLAN V+V+
Sbjct: 987  EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVR 1046

Query: 463  KANGKWRMCTDYTSLNKVCPKDSYPLPNVDKLVDGASGNELLSLMDAYSGYNQIMMHPSD 522
            K  G+WRMC DYT LNK CPKD + LP +D++VD  +G ELLS +D YSGY+QI +  SD
Sbjct: 1047 KKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESD 1106

Query: 523  EESTAFMTNQANYCYKTMPFGLKNAGATYQRLMDKIFSKQVGRNMEVYVDDMIVKSARAS 582
               T+F+T    YCY TMPFGLKNAGATYQR++ + FS Q+GRN+E YVDD++VK+ +  
Sbjct: 1107 CLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKD 1166

Query: 583  DHGGDLKEAFDQLRTYQMKLNPEKCSFGIQGGKFLGFMLTSRGIEVNPDKGRAILEMKSP 642
            D   DL+E F  +R ++MKLNPEKC+FG+  GK LGFM++ RGI+ NP+K  AIL MK P
Sbjct: 1167 DLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPP 1226

Query: 643  TSVKEVQRLTGRMAALSRFLPMAGDKAAPFFTCLKKNSKFQWTEECEQAFTKLKETLATL 702
            ++ K+VQ+LTG MAALSRF+   G++  PFF  LKK   FQW  E ++AF   K+ L   
Sbjct: 1227 STQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFLTEP 1286

Query: 703  PVLSKPTPGVPLVLYLAVTDKAVSTVLLQEEGKKQKV---IYFVSHTLQGAELRYQKIEK 759
            PV+S                  V  V  +EEG  QKV   IYFVS  L  ++ RY +++K
Sbjct: 1287 PVVS-----------------TVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQK 1329

Query: 760  AALAILKTARRLRPYFQSFQVKVKTDVPLRQVLQKPDLSGRLVSWSVELSEYDIQYEPRG 819
                IL T R+L  YFQ   V V T  PL  +L   + +GR+  W++EL   DI ++PR 
Sbjct: 1330 LLYGILITTRKLSHYFQGHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRI 1389

Query: 820  QVTVQSLIDFVAELT----PTEGEKTQGEWVLSVDGSSNNTGSGAGITIESPDKMIIEQS 875
             +  Q+L DFVAE T     T  EK +  W +  DGS   +G+GAG+ + SP    +   
Sbjct: 1390 SIKSQALADFVAEWTECQEDTPAEKME-HWTMHFDGSKRLSGTGAGVVLISPTGERLSYV 1448

Query: 876  LKFEFKASNNQSEYEALIAGLRLAIELGVQKLFIKGDSQLVVKQVKGEYQVKDPQLSKYL 935
            L   F AS+N +EYEAL+ GLR+AI LG+++L ++GDSQLVV QV  E+   D  +  Y 
Sbjct: 1449 LWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYR 1508

Query: 936  EVVRRLMMEVKEIKIEHVPRGQNERADVLAKLASTGRLGNYQTVIQETLPRPSIDLVE-I 994
            + VR+L  +   +++ HV R  NE AD LA   S   +     V  E L  P++   +  
Sbjct: 1509 QEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREMAP-SDVFVEHLYAPTVPHKDTT 1567

Query: 995  KLKVVKSVNEGELPWMESIKTFL--ENPPKEDDLNTRTKRREASFYTLVDGELYRRGIMS 1052
            ++     V   E  W E +  FL  +  P++ D   R  RR +  Y + + ELY++    
Sbjct: 1568 QVAGTHDVAMVEADWREPLIRFLTSQELPQDKDEAERISRR-SKLYVMHEAELYKKSPSG 1626

Query: 1053 PMLKCVDTKDALGIMAEVHEGVCSSHIGGRSLAVKVIRAGFYWPTMKKDCLEYVKKCEKC 1112
             + +CV  ++   ++ ++H G+C +H   R++  K  R GF+WPT   D  + V+ CE C
Sbjct: 1627 ILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGC 1686

Query: 1113 QVFSDLHKAPPEELTTMMAPWPFAMWGTDILGPFPVAKAQMKYIIVAVDYFTKWIEAEAV 1172
            Q F+     P +EL T+   WPFA+WG D++GPF  A     ++ VA+D F+KWIEA+ V
Sbjct: 1687 QFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPV 1746

Query: 1173 ATITAAKVRNFLWQRIVCRFGVPMALVMDNGTQFTSSVTREFCAEMGIEMRFASVEHPQT 1232
             TITA   R+F +  IV RFGVP  ++ DNGTQFT  V ++FC + GI++ +ASV HP +
Sbjct: 1747 VTITADNARDF-FINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1805

Query: 1233 NGQAESANKVILKGLKKKL-DEAK---GLWAEELPGVLWAYNTTEQSSTKETPYRLTYGT 1288
            NGQ E AN +IL+G+K ++ D  K   G W ++LP VLW+  TT   +T ++P+ L YG 
Sbjct: 1806 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1865

Query: 1289 DAMLSVEIENQSWRVARFNENDNGENLIANLIMLPEEQREAHIRNEAGKVKVARKFSTKV 1348
            +AML  E+E +S R   F E    E+ + +L  L E +  A IR+      + R  +  V
Sbjct: 1866 EAMLPSEVEFESLRFRNFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNV 1925

Query: 1349 VPRKMRVGDLVL*K-NTIPDKHNKLSPNWGGPYRIIGDVGGEAYKLEQLSGQKVPRTWNA 1407
              R   VGDLVL K  T  D+H KLSP W GP+ I       +Y+L++  G  V  +WN 
Sbjct: 1926 RSRAFLVGDLVLRKIQTTRDRH-KLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNI 1984

Query: 1408 SHLKQYF 1414
             HL++++
Sbjct: 1985 EHLRRFY 1991


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,397,269,008
Number of Sequences: 2540612
Number of extensions: 103608061
Number of successful extensions: 309568
Number of sequences better than 10.0: 36121
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 31790
Number of HSP's that attempted gapping in prelim test: 285868
Number of HSP's gapped (non-prelim): 47016
length of query: 1414
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1273
effective length of database: 505,134,102
effective search space: 643035711846
effective search space used: 643035711846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)