BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0113.14
(584 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 250 1e-64
emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|49720... 230 1e-58
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 229 2e-58
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 228 3e-58
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 224 5e-57
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 221 5e-56
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 221 5e-56
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 216 1e-54
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 211 5e-53
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 209 2e-52
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 204 6e-51
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 202 2e-50
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 199 2e-49
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 198 3e-49
ref|NP_909558.1| putative reverse transcriptase [Oryza sativa] g... 190 9e-47
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 189 2e-46
emb|CAD41337.2| OJ991113_30.21 [Oryza sativa (japonica cultivar-... 189 2e-46
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 189 3e-46
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ... 187 6e-46
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 185 4e-45
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 250 bits (638), Expect = 1e-64
Identities = 166/567 (29%), Positives = 257/567 (45%), Gaps = 32/567 (5%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWR-GNNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
+P Y M+ + P C ++ + IA WW + + +HWK+W+ L K GGMGF++F
Sbjct: 815 IPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFT 874
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA L +Q WR+L +P++ + VLKG YFPN +F A + + S+ W S++ GREL+
Sbjct: 875 TFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELLA 934
Query: 144 NQGRWSIEDGKSVNLLGHRWL-----ACNERLREGPLDTTVSSLMENQTRTWSISKITSV 198
RW + DGK++ + W+ L P D TVS LM R W I S+
Sbjct: 935 KGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFPTDATVSCLMNEDARCWDGDLIRSL 994
Query: 199 LSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSH----KELEESRG-AT 253
+ +LQ PI D WP+ G Y+++S Y ARS + RG A+
Sbjct: 995 FPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGMAS 1054
Query: 254 SSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDA 313
S++ W+ + P K+K+ LW+ HE L T LRRRH S C C R+D
Sbjct: 1055 RLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCN--RDDT 1112
Query: 314 A-HVFLHCPWLRPVW---FGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLG 369
HVFL CP+ +W G ++ W+ L+ GS + L
Sbjct: 1113 VEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWI------FDFLKRGSSHANTLLA 1166
Query: 370 FLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWT 429
W +W+ RNN +P + + + + + +L+ T+ + G + I W
Sbjct: 1167 VTFWHIWEARNNTKNNNGTVHPQRVV-IKILSYVDMILKHNTKTVDGQRGGNTQAIPRWQ 1225
Query: 430 RPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKG-CFV*GNHRQLHAASALAAEALILREA 488
PP N+DA G + +D+ G C V + AEAL +R A
Sbjct: 1226 PPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRA 1285
Query: 489 VFAAMNLNMDRVVFEADNLGLIEACREQ-REKGEILAIVKDIRKCKLDFPNWIFSWTRRE 547
+ A ++ +V +D L +I + R++ + +++DI+K F F R
Sbjct: 1286 LGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRL 1345
Query: 548 GNECAHVLAR---LALC---RSIPPHW 568
N AH LAR L+ C RS+ P +
Sbjct: 1346 SNLAAHSLARNAELSTCTVYRSVIPDY 1372
>emb|CAB79667.1| putative protein [Arabidopsis thaliana] gi|4972055|emb|CAB43923.1|
putative protein [Arabidopsis thaliana]
gi|67633766|gb|AAY78807.1| putative reverse
transcriptase/RNA-dependent DNA polymerase [Arabidopsis
thaliana] gi|15233451|ref|NP_194638.1| reverse
transcriptase, putative / RNA-dependent DNA polymerase,
putative [Arabidopsis thaliana] gi|7485741|pir||T08964
hypothetical protein F19B15.120 - Arabidopsis thaliana
Length = 575
Score = 230 bits (586), Expect = 1e-58
Identities = 173/580 (29%), Positives = 253/580 (42%), Gaps = 49/580 (8%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNND-RGIHWKNWASLMFSKAEGGMGFKDFA 83
LPTY MA PK C QI S +A FWWR + +G+HWK W L KAEGG+GFKD
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
N A L KQ WR+L P + A V K YF + L+A + S+ W SI +E++
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILR 122
Query: 144 NQGRWSIEDGKSVNLLGHRWL------ACNERLREGPLD-------TTVSSLMENQTRTW 190
R + +G+ + + H+WL A R P + VS L++ R W
Sbjct: 123 QGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREW 182
Query: 191 SISKITSVLSLPDLGRVLQTPIRLTEGE--DEIFWPYRDYGQYTIKSGYIQARSHKELEE 248
K + P++ R L +R D W Y G YT+KSGY
Sbjct: 183 --RKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 249 SRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEA 308
S S ++ I ++ KI+ FLWK + +LP L RH E++C C +
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 309 PREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPI-----WLEA---KLSQLSNLESG 360
+E H+ C + R W +I S+PI W ++ L + NL +G
Sbjct: 301 CKETVNHLLFKCTFARLTW-----------AISSIPIPLGGEWADSIYVNLYWVFNLGNG 349
Query: 361 S---EQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIY 417
+ E+ + +LLW +WK RN FRG N L A + +E+ + T E
Sbjct: 350 NPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTK 409
Query: 418 GGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQL-HAAS 476
W PP ++KCNTDA + R + G++ +++KG R L S
Sbjct: 410 PQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKS 469
Query: 477 ALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDF 536
L AE +R AV + + V+FE+D+ LIE + ++D+++ F
Sbjct: 470 VLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKPTIQDLQRLLSQF 529
Query: 537 PNWIFSWTRREGNECAHVLARLAL--------CRSIPPHW 568
F + REGN A +AR +L SI P W
Sbjct: 530 TEVKFVFIPREGNTLAERVARESLSFLNYDPKLYSIVPSW 569
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 229 bits (583), Expect = 2e-58
Identities = 168/572 (29%), Positives = 264/572 (45%), Gaps = 34/572 (5%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNW 65
+ + P+ K + +P YAM+ K PK +I S + FWW + +N RGI W W
Sbjct: 938 RFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAW 997
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQAWR++Q PN+ +A V+K YF + + L AK +
Sbjct: 998 KRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVR 1057
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSV-----NLLGH---RWLACNERLREGPLDT 177
+Q S+ W S++ G L+ R I DG+++ N++ R L E +E
Sbjct: 1058 KQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKE----M 1113
Query: 178 TVSSLMENQTR--TWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKS 235
T+++L E + W SKI+ + D G + + + ++ D+I W Y G+YT++S
Sbjct: 1114 TINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1173
Query: 236 GYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRR 295
GY +H S + I + I K+K FLW+ + +AL T L R
Sbjct: 1174 GY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR 1232
Query: 296 HCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIW---LEAKLS 352
+ CP C E H CP+ W+ S D S++ + E +S
Sbjct: 1233 GMRIDPICPRCHRENESINHALFTCPFATMAWWLS------DSSLIRNQLMSNDFEENIS 1286
Query: 353 QLSNL-----ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLL 407
+ N S +L+ +L+W +WK RNN F R +P + A + ++L
Sbjct: 1287 NILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLN 1344
Query: 408 ETTT-EFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV- 465
T + + P + W PP ++KCN DAGF +A GG+I ++ G +
Sbjct: 1345 ATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 1404
Query: 466 *GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAI 525
G+ + H ++ L AE L A+ +V E D LI +
Sbjct: 1405 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANH 1464
Query: 526 VKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
++DI F + F + RR+GN+ AHVLA+
Sbjct: 1465 LEDISFWANKFASIQFGFIRRKGNKLAHVLAK 1496
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 228 bits (582), Expect = 3e-58
Identities = 168/572 (29%), Positives = 264/572 (45%), Gaps = 34/572 (5%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNW 65
+ + P+ K + +P YAM+ K PK +I S + FWW + +N RGI W W
Sbjct: 1164 RFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAW 1223
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQAWR++Q PN+ +A V+K YF + + L AK +
Sbjct: 1224 KRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVR 1283
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSV-----NLLGH---RWLACNERLREGPLDT 177
+Q S+ W S++ G L+ R I DG+++ N++ R L E +E
Sbjct: 1284 KQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKE----M 1339
Query: 178 TVSSLMENQTR--TWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKS 235
T+++L E + W SKI+ + D G + + + ++ D+I W Y G+YT++S
Sbjct: 1340 TINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1399
Query: 236 GYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRR 295
GY +H S + I + I K+K FLW+ + +AL T L R
Sbjct: 1400 GY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR 1458
Query: 296 HCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIW---LEAKLS 352
+ SCP C E H CP+ W S D S++ + E +S
Sbjct: 1459 GMRIDPSCPRCHRENESINHALFTCPFATMAWRLS------DSSLIRNQLMSNDFEENIS 1512
Query: 353 QLSNL-----ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLL 407
+ N S +L+ +L+W +WK RNN F R +P + A + ++L
Sbjct: 1513 NILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLN 1570
Query: 408 ETTT-EFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV- 465
T + + P + W PP ++KCN DAGF +A GG+I ++ G +
Sbjct: 1571 ATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 1630
Query: 466 *GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAI 525
G+ + H ++ L AE L A+ +V E D LI +
Sbjct: 1631 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANH 1690
Query: 526 VKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
++DI F + F + R++GN+ AHVLA+
Sbjct: 1691 LEDISFWANKFASIQFGFIRKKGNKLAHVLAK 1722
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 224 bits (572), Expect = 5e-57
Identities = 157/583 (26%), Positives = 254/583 (42%), Gaps = 48/583 (8%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
LPTY M + K P FC I +FWW N R HW +W L+ K++GG+GFKD
Sbjct: 70 LPTYVMNVFKLPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSKGGIGFKDLK 129
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
+ NQA LA+QAWR++Q ++ A ++K YFPN + + +S W I HG EL+
Sbjct: 130 IFNQALLARQAWRLIQFLDSLCAKLMKARYFPNGHLIDTVFPTDSSEVWRGICHGLELLK 189
Query: 144 NQGRWSIEDGKSVNLLGHRWLACNERLREGPLDTT-----VSSLMENQTRTWSISKITSV 198
W I G +++ W+ + +LR T V+ L+ + W I +
Sbjct: 190 KGIIWRIGKGDQLHIWRDNWIPRDHQLRVTGKRTRTCLKWVADLVSPNNQEWDEGLIRQI 249
Query: 199 LSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPS 258
P + +L+ + + +D + W G +T++S Y + + GA SS +
Sbjct: 250 FYPPYVDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYKLGLAEEHRANEAGACSSNGN 309
Query: 259 --KECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
+ W++I SA++P K+ +F W++ E LPT+ N ++R+ V C +C APRED H
Sbjct: 310 GDRVLWKNIWSAQVPQKVCIFAWRLAVERLPTQHNKQKRNIVPSARCEVCGAPREDGFHA 369
Query: 317 FLHCPWLRPV--WFGSFFQLAP-DPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLW 373
+ C + + +F+ + P D + P WL L L ++ + ++ L+ +LW
Sbjct: 370 TVVCTKAKALRDELRAFWPIPPEDKFVRQGPDWLLLLLDTL-DMRNKAQMLL-----MLW 423
Query: 374 GVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPI-------------YGGH 420
W +RNN L + S FL PI G
Sbjct: 424 RAWHLRNNSVHDTG--------TLTISGSIRFLQSYVQLLFPIRQKEDPKGKCAAQVPGR 475
Query: 421 VNRG--------IRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQL 472
+N+ ++ W PP G+ K N D F N G I +D +G + + + L
Sbjct: 476 LNQNPGVTKADCLQIWEPPPEGWAKINVDGAFSMTDNTGGIGVIARDSEGKALLSSWKYL 535
Query: 473 H-AASALAAEALILREAVFAAMNLNMDRVVFEADNLGLI-EACREQREKGEILAIVKDIR 530
H A A E L E + A ++ E+D + +I E E+ +++ +
Sbjct: 536 HRCADAEQVEILACYEGMKLAAEWIRKPIILESDCVTVIGRMTAEDEERSRWTFLIRSAK 595
Query: 531 KCKLDFPNWIFSWTRREGNECAHVLARLALCRSIPPHWCAHLP 573
+RE N AH LA+LA + W H+P
Sbjct: 596 AVMRSLQEVRIQHRKRECNRVAHELAQLAKRTAHCAVWRDHVP 638
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 221 bits (563), Expect = 5e-56
Identities = 149/527 (28%), Positives = 245/527 (46%), Gaps = 22/527 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRG-NNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M+ K PK C ++ + + FWW R IHW +W L K +GG GFKD
Sbjct: 778 LPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQ 837
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQAWR+LQE + ++ V + YF N +FL A + + S+AW SI+ GREL++
Sbjct: 838 CFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLM 897
Query: 144 NQGRWSIEDGKSVNLLGHRWLACN------ERLREGPLDTTVSSLMENQTRTWSISKITS 197
R I +G+ + +WL R R +D VS L++ +R W+++ +
Sbjct: 898 QGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRD 957
Query: 198 VLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGY--IQARSHKELEESRGATS 254
+ D+ +L Q P+ ED W + G Y++K+GY + + H L +
Sbjct: 958 LFPWKDVEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKP 1015
Query: 255 SEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAA 314
S S + I + KI++FLWK +H A+P + LR R S+ C +C+ E
Sbjct: 1016 SVNS--LFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETIN 1073
Query: 315 HVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLE-AKLSQLSNLESGSEQLISYLGFLLW 373
H+ CP R VW + L+ S S ++ ++L L+ L ++LW
Sbjct: 1074 HILFECPLARQVW--AITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILW 1131
Query: 374 GVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPL 433
+WK RN F G+ ++ A EA E+ T + + I W P
Sbjct: 1132 FLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQT----HMQNDEKHLKITKWCPPLP 1187
Query: 434 GFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAA-SALAAEALILREAVFAA 492
G LKCN + + + + ++ +D +G + + R + S +A+ A+ +
Sbjct: 1188 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESM 1247
Query: 493 MNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNW 539
+ + DRV+F + +I+A + E +L + ++ D P+W
Sbjct: 1248 THHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELLSFTKDKPHW 1294
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 221 bits (563), Expect = 5e-56
Identities = 149/527 (28%), Positives = 245/527 (46%), Gaps = 22/527 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRG-NNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M+ K PK C ++ + + FWW R IHW +W L K +GG GFKD
Sbjct: 799 LPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQ 858
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQAWR+LQE + ++ V + YF N +FL A + + S+AW SI+ GREL++
Sbjct: 859 CFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLM 918
Query: 144 NQGRWSIEDGKSVNLLGHRWLACN------ERLREGPLDTTVSSLMENQTRTWSISKITS 197
R I +G+ + +WL R R +D VS L++ +R W+++ +
Sbjct: 919 QGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRD 978
Query: 198 VLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGY--IQARSHKELEESRGATS 254
+ D+ +L Q P+ ED W + G Y++K+GY + + H L +
Sbjct: 979 LFPWKDVEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKP 1036
Query: 255 SEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAA 314
S S + I + KI++FLWK +H A+P + LR R S+ C +C+ E
Sbjct: 1037 SVNS--LFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETIN 1094
Query: 315 HVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLE-AKLSQLSNLESGSEQLISYLGFLLW 373
H+ CP R VW + L+ S S ++ ++L L+ L ++LW
Sbjct: 1095 HILFECPLARQVW--AITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILW 1152
Query: 374 GVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPL 433
+WK RN F G+ ++ A EA E+ T + + I W P
Sbjct: 1153 FLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQT----HMQNDEKHLKITKWCPPLP 1208
Query: 434 GFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAA-SALAAEALILREAVFAA 492
G LKCN + + + + ++ +D +G + + R + S +A+ A+ +
Sbjct: 1209 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESM 1268
Query: 493 MNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNW 539
+ + DRV+F + +I+A + E +L + ++ D P+W
Sbjct: 1269 THHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELLSFTKDKPHW 1315
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 216 bits (551), Expect = 1e-54
Identities = 167/611 (27%), Positives = 252/611 (40%), Gaps = 54/611 (8%)
Query: 3 RVERKIVKPSWKRNFDQGSGS---------GLPTYAMAILKFPKQFCHQIASQIARFWWR 53
R+ +K++ W+ NF G LPTY M+ K PK C QI S +A FWW+
Sbjct: 771 RLGKKVL--GWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWK 828
Query: 54 GNND-RGIHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGI 112
+ RG+HWK W L KA GG+GFK+ N A L KQ WR++ E ++ A V K
Sbjct: 829 NKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSR 888
Query: 113 YFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACN----- 167
YF + L+A + S+AW SI + LI R I +G+++N+ W+
Sbjct: 889 YFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAA 948
Query: 168 ERLREGPLDT--------TVSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGED 219
+ ++ L + V L+ R W+ + ++ + +L E D
Sbjct: 949 QAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRD 1008
Query: 220 EIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLW 279
W Y G Y++KSGY + ++ I +P KI FLW
Sbjct: 1009 RFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLW 1068
Query: 280 KIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPS 339
+ ++ L NL RH E SC C + E H+ CP+ R W S P
Sbjct: 1069 RCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGE 1128
Query: 340 ILSLPIWLEAKLSQLSNL---------ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPN 390
W E+ + ++ ES LI + +LW +WK RN+ F+G
Sbjct: 1129 ------WAESLFRNMHHVLSVHKSQPEESDHHALIPW---ILWRLWKNRNDLVFKGREFT 1179
Query: 391 PVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNK 450
+ A E + E P W P G++KCNTD + +
Sbjct: 1180 APQVILKATEDMDAW--NNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGN 1237
Query: 451 AAGGYIFKDDKGCFV*GNHRQLHA-ASALAAEALILREAVFAAMNLNMDRVVFEADNLGL 509
G++ ++ G + R L + S L E LR AV + N RV+FE+D+ L
Sbjct: 1238 CGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYL 1297
Query: 510 IEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLAL--------C 561
+ + + + + ++DIR F F +TRREGN A AR +L
Sbjct: 1298 VSLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKM 1357
Query: 562 RSIPPHWCAHL 572
SI P W +L
Sbjct: 1358 YSITPDWIKNL 1368
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 211 bits (537), Expect = 5e-53
Identities = 143/459 (31%), Positives = 215/459 (46%), Gaps = 35/459 (7%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNW 65
K + P+ K + +P YAM+ K P+ +I S + FWW + +N RGI W W
Sbjct: 403 KFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAW 462
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQAWRI+Q PN+ +A V+K YF + + + AK +
Sbjct: 463 KRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTR 522
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSVNL--------LGHRWLACNERLREGPLDT 177
Q S+ W+S++ G L+ R+ I DGK++ L R L +E+ LD
Sbjct: 523 SQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVVDSHPPRPLLTDEQHNGLSLDN 582
Query: 178 TVSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGY 237
+R W +K+ + + D + + + D + W Y G YT++SGY
Sbjct: 583 LFQH--RGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGY 640
Query: 238 IQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHC 297
+H S + I + I K+K FLW+I+ +ALPT L R
Sbjct: 641 -WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGM 699
Query: 298 VSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDP----SILSLPIWLEAKLSQ 353
+ CP C E H CP+ W +L+ P SILS I E +S
Sbjct: 700 RIDPGCPRCRRENESINHALFTCPFATMAW-----RLSDTPLYRSSILSNNI--EDNISN 752
Query: 354 L-----SNLESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLE 408
+ + + S++LI + +LLW +WK RNN F R +P + + A + E+L
Sbjct: 753 ILLLLQNTTITDSQKLIPF--WLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNA 810
Query: 409 TTTE---FLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGF 444
T T+ LP G W +P + ++KCN DA F
Sbjct: 811 TQTQGPRRLP--KRTTAAGNTTWVKPQMPYIKCNFDASF 847
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 209 bits (533), Expect = 2e-52
Identities = 152/582 (26%), Positives = 245/582 (41%), Gaps = 51/582 (8%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWR-GNNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
+P Y M I P+ C ++ FWW R HWK+W L K+ GG+GF+DF
Sbjct: 311 IPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRPKSNGGLGFRDFR 370
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
+ NQA LA+QAWR++ P++ A VLK YFPN + + AS W +I +G L+
Sbjct: 371 LFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEYGLSLLK 430
Query: 144 NQGRWSIEDGKSVNLLGHRWL----ACNERLREGPLDTTVSSLMENQTRTWSISKITSVL 199
W I +GKSV + WL + R+G S + ++ W +++ V
Sbjct: 431 EGIIWRIGNGKSVRIWRDPWLPRDFSRRPITRKGNCRLKWVSELLSENGAWDETRVNQVF 490
Query: 200 SLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSK 259
D + + + +D + W +G+++++S Y A + +E S ++SS K
Sbjct: 491 LPVDAEAICSIRVSSRQEDDFVAWHPDKHGKFSVRSAYGLACNLVNMETS-SSSSSARCK 549
Query: 260 ECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLH 319
W I P K+++F W+ L T N +R C +C +ED HV
Sbjct: 550 RMWNLIWQTNAPQKVRIFAWRAATNCLATMENKAKRKLEQSDICLVCGLEKEDTKHVLCR 609
Query: 320 CPWLRPVWFGSFFQLA----PDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGV 375
CP R +W G+ + ++ + P W+ +L L + E LI LW +
Sbjct: 610 CPDARNLW-GAMCEAGNISLNGGNLCNDPGWIFDQLEILLDYERTVFLLI------LWRI 662
Query: 376 WKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPI---------YGGHVNRGI- 425
W +RN G++P P +EASK FL L I G HV +
Sbjct: 663 WFVRNE-IVHGKQPPP-------IEASKRFLESYVKSLLEIRQHPQANVEKGKHVISFVN 714
Query: 426 --------------RHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQ 471
+ W +P G++K N D F G + +D G + +
Sbjct: 715 GKTNPARRPPEDKNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCKH 774
Query: 472 L-HAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACR-EQREKGEILAIVKDI 529
L SAL +E L +E + + ++ + V E D L +++ ++RE E+ +VK+
Sbjct: 775 LPRCGSALESEILACKEGILVGLQWSLRQFVVETDCLMVVQMLESKEREMSEVAFLVKEA 834
Query: 530 RKCKLDFPNWIFSWTRREGNECAHVLARLALCRSIPPHWCAH 571
+ R N +H+LA C + W H
Sbjct: 835 TELLSGDREIQLRKIHRSQNSVSHLLANKGRCEGLSVFWLDH 876
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 204 bits (519), Expect = 6e-51
Identities = 120/388 (30%), Positives = 186/388 (47%), Gaps = 8/388 (2%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWWRGNNDRG-IHWKNW 65
K++ P+ K + + +PTY+M+ P + HQI S + FWW + I W W
Sbjct: 237 KLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAW 296
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
+ L K GG+ +D N A LAKQ+WRILQ+P + A V K YFP E L AK
Sbjct: 297 SKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKAT 356
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACN-ERLREGPLDTTVSSLME 184
Q+S+AW SI+HG +LI ++ +G ++ L WL N R G D+ S L
Sbjct: 357 SQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKV 416
Query: 185 NQ---TRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQAR 241
+ W+ + ++ D+ + +T D I W Y G Y++KSGY R
Sbjct: 417 SDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLR 476
Query: 242 SHKELEESRGATSSEPSKE-CWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSE 300
+ + + + +E S + + +I P KIK F W+ H ALPT NL+RR +++
Sbjct: 477 KLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITD 536
Query: 301 TSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESG 360
+C C ED H+ C + +W + +L P S++S L + L
Sbjct: 537 DTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNS--FNQNLESIQKLNQS 594
Query: 361 SEQLISYLGFLLWGVWKMRNNGTFRGER 388
+ + +S F+ W +WKMRN+ F +R
Sbjct: 595 ARKDVSLFPFIGWRIWKMRNDLIFNNKR 622
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 202 bits (514), Expect = 2e-50
Identities = 168/584 (28%), Positives = 247/584 (41%), Gaps = 49/584 (8%)
Query: 9 VKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWWRGNNDRGIHWKNWASL 68
+ P+ K + LP Y+M P C++I S I FWW N
Sbjct: 1146 LSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGKEN------------ 1193
Query: 69 MFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQA 128
EG +GFKD N+A LAKQAWRIL P + A + KG+Y+PN +L A K A
Sbjct: 1194 -----EGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHA 1248
Query: 129 SWAWNSIIHGRELILNQG-RWSIEDGKSVNLLGHRWL-ACNERLREGPL---DTTVSSLM 183
S+ WNSI G+ L+L QG R + DG++ + WL R GP+ D V+ L
Sbjct: 1249 SYGWNSIQEGK-LLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLW 1307
Query: 184 ENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSH 243
R W VL+ D + D W Y QYT++SGY A +H
Sbjct: 1308 RENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVA-TH 1366
Query: 244 KELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSC 303
L E E + I +I KIK F+W+ + AL T LR R+ ++ +C
Sbjct: 1367 VNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTC 1426
Query: 304 PICEAPREDAAHVFLHCPWLRPVWFGSFFQ-----LAPDPSILSLPIWLEAKLSQLSNLE 358
C E H+ C + + VW + F D ++ + L+ K +Q +
Sbjct: 1427 QRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPIL 1486
Query: 359 SGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYG 418
+G L+ + +++W +WK RN F+ P A + + E+ +ET I
Sbjct: 1487 NG---LMPF--WIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEW-VETMVNDTAISH 1540
Query: 419 GHVNRGIR------HWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQL 472
R W+ PP GFLKCN D+G+++ + + G+I +D G + +L
Sbjct: 1541 NTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKL 1600
Query: 473 HAA-SALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRK 531
+ SAL AEAL A+ V FE DNL L + + + ++ DIR
Sbjct: 1601 QQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLLETLLYDIRF 1660
Query: 532 CKLDFPNWIFSWTRREGNECAHVLARLALCRS-------IPPHW 568
P + RE N A L + A S +PP W
Sbjct: 1661 WMTKLPFSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPPRW 1704
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 199 bits (506), Expect = 2e-49
Identities = 151/568 (26%), Positives = 239/568 (41%), Gaps = 25/568 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNN-DRGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M + PK C ++ S + FWW IHW L K+ GG GFKD
Sbjct: 752 LPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQ 811
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQAWR+ + + + + K YF N +FL+A++ + S+ W SI++GREL+
Sbjct: 812 CFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLN 871
Query: 144 NQGRWSIEDGKSVNLLGHRWLACNERLREGPLDT------TVSSLMENQTRTWSISKITS 197
+ I +G+ N+ +WL R L + VS L++ TR W++ K+T
Sbjct: 872 GGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTE 931
Query: 198 VLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSE 256
+ D+ ++ Q P L ED W + G YT+KSGY ++ + A
Sbjct: 932 LFHEKDVQLIMHQRP--LISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYP 989
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
+ + S KIKVF+WK + AL + LR R + C C+ E H+
Sbjct: 990 SVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHL 1049
Query: 317 FLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVW 376
CP+ R VW S Q AP + + Q S + + +LLW +W
Sbjct: 1050 LFQCPFARQVWALSLIQ-APATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIW 1108
Query: 377 KMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPLGFL 436
K RN F+G + + +A +E L + G V+ W PP G L
Sbjct: 1109 KNRNKTLFQG---TGLTSSEIVAKAYEECNLWINAQ--EKSSGGVSPSEHKWNPPPAGEL 1163
Query: 437 KCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAVFAAM-NL 495
KCN + R A ++ +D G + + R +L + + +M +
Sbjct: 1164 KCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYSQVYSLFDAKIKSWDWALESMDHF 1223
Query: 496 NMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVL 555
+ D+V F A + +I+A + E ++ + + D +W + N A +
Sbjct: 1224 HFDKVTFAATSHDIIKALHKPNEWPMLIGHIAEFLSFTKDISDWFMMMESTQCNNGAAEI 1283
Query: 556 ARLAL--------CRSIPPHWCAHLPQE 575
A+ + PHW L +E
Sbjct: 1284 AKSVITGMRWQSYVACSFPHWLRSLFEE 1311
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 198 bits (504), Expect = 3e-49
Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 25/372 (6%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
LPTY M + K +FC + FWW N +R +HW W +++ K+ GG+GF+D
Sbjct: 712 LPTYIMGVFKMTDKFCDDYTRMVRNFWWGHDNGERKVHWIAWEKILYPKSHGGLGFRDMK 771
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LA+QAWR+L P++ A V K Y+PN N + +S W I HG +L+
Sbjct: 772 CFNQALLARQAWRLLTSPDSLCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQHGLDLLK 831
Query: 144 NQGRWSIEDGKSVNLLGHRWLACNERL----REGPLDTT-VSSLMENQTRTWSISKITSV 198
W + +G ++ + H+W+ E + ++G V+ L+ + R W+ + + V
Sbjct: 832 QGTIWRVGNGHNIKIWRHKWVPHGEHINVLEKKGRNRLIYVNELINEENRCWNETLVRHV 891
Query: 199 LSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQA--RSHKELEESRGATSSE 256
L D VL+ + + +D W + G +T+KS Y A S K + +S +T++
Sbjct: 892 LKEEDANEVLKIRLPNHQMDDFPAWHHEKSGLFTVKSAYKLAWNLSGKGVVQSSSSTATS 951
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
++ W + +A++ K+K+F+WK+ + LPT N RRR +CP+C E++ H
Sbjct: 952 GERKIWSRVWNAKVQAKVKIFIWKLAQDKLPTWENKRRRKIEMNGTCPVCGTKGENSYHA 1011
Query: 317 FLHC-------PWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLG 369
+ C LR VW D + + P WL L L+ +E+ +++
Sbjct: 1012 TVECTKARALREALRAVW----HLPGEDKFLWTGPDWL------LILLDGVNEEQRTHIM 1061
Query: 370 FLLWGVWKMRNN 381
++LW W +RN+
Sbjct: 1062 YMLWRAWYLRND 1073
>ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
gi|14018103|gb|AAK52166.1| putative reverse transcriptase
[Oryza sativa]
Length = 1185
Score = 190 bits (483), Expect = 9e-47
Identities = 156/580 (26%), Positives = 252/580 (42%), Gaps = 70/580 (12%)
Query: 5 ERKIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWWRGN-NDRGIHWK 63
+ K++ K + +P +AM++ + PK+ C I+ IARFWW + N R IHWK
Sbjct: 598 KEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCISEAIARFWWGDDENHRRIHWK 657
Query: 64 NWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAK 123
W + K GG+GF+D N+A LAKQ WR L +P++ A V++ Y+P+ N L A+
Sbjct: 658 AWWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRAR 717
Query: 124 KKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACNER-----LREGPLDTT 178
K+ +S+AW SI+ G E W I DG VN+ + + R + T
Sbjct: 718 PKKGSSYAWQSILSGSECFKGY-IWRIGDGSQVNIWEDSLIPSSSNGKVLTPRGRNIITK 776
Query: 179 VSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYI 238
V L+ + W I ++ D R+LQ PI ED + W + G ++++S Y
Sbjct: 777 VEELINPVSGGWDEDLIDTLFWPIDANRILQIPISAGR-EDFVAWHHTRSGIFSVRSAYH 835
Query: 239 QARSHKELEESR---GATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRR 295
+ K + R GA+SS S+ W ++ IP KIK+F W+++H +P K L +
Sbjct: 836 CQWNAKFGSKERLPDGASSS--SRPVWDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADK 893
Query: 296 HCVSETSCPICEAPREDAAHVFLHCPWLRPVW--FGSFFQLAP----DPSILSLPIWLEA 349
H + CP+C + ED H+ C + +W G + ++ P D S L +
Sbjct: 894 HIAVQGGCPVCSSGVEDIKHMVFTCRRAKLIWKQLGIWSRIQPILGFDRSGSVLVEEMIR 953
Query: 350 KLSQLSNLES-GSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLE 408
K ++S+L + G +LI + +W W+ R +GER
Sbjct: 954 KGGKVSHLNAIGMTELILTGAWYIW--WERRQ--LVQGER-------------------- 989
Query: 409 TTTEFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAG--GYIFKDDKGCFV* 466
I++ R + T+ ++ K +G G + +D G V
Sbjct: 990 ----------------IQNPARSAMSIATLTTN--YMLSNKKGSGGIGVVLRDHLGACVA 1031
Query: 467 GNHRQL-HAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAI 525
+ L H A AEA LR+ + A ++ V+ + D + ++ +
Sbjct: 1032 ASQAFLPHVLDAPMAEAFALRDGLSLAQHIGAKNVIVQTDCMQVVSTMMDGGFSATAAMS 1091
Query: 526 VKDIRKCKL---DFPNWIFSWTRREGNECAHVLARLALCR 562
V D CKL F R N+ AH LAR + R
Sbjct: 1092 VFD--DCKLMWDGFGTISIEHCNRNSNQVAHELARCLIGR 1129
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 189 bits (481), Expect = 2e-46
Identities = 127/435 (29%), Positives = 198/435 (45%), Gaps = 42/435 (9%)
Query: 3 RVERKIVKPSWKRNFDQGSGS---------GLPTYAMAILKFPKQFCHQIASQIARFWWR 53
R+ +KI++ W N+ G +P Y M I K P+ C + S FWW
Sbjct: 1140 RIWKKILQ--WGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWG 1197
Query: 54 GNND-RGIHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGI 112
R HWK W SL SK+ GG+GFKD + NQA LA+QAWR++ P++ A VLK
Sbjct: 1198 AEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAK 1257
Query: 113 YFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACNERLRE 172
Y+PN + + AS W +I HG EL+ W I +G+SV + WL L
Sbjct: 1258 YYPNGSIVDTSFGGNASPGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLP--RDLSR 1315
Query: 173 GPLDTT-------VSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPY 225
P+ V+ LM + W +KI + D+ +L+ + ED I W
Sbjct: 1316 RPITPKNNCRIKWVADLMLD-NGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHP 1374
Query: 226 RDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEA 285
G +++++ Y A + + EE+ ++S ++ W + +P K+K+F W+
Sbjct: 1375 DKLGNFSVRTAYRLAENWAK-EEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNC 1433
Query: 286 LPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWF----GSFFQLAPDPSIL 341
LPT N ++R+ +C IC +ED H CP + +W + L D +L
Sbjct: 1434 LPTWDNKKKRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLL 1493
Query: 342 SLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEA 401
P WL +L+ L + E ++ LW +W + N G +P+P ++EA
Sbjct: 1494 G-PSWLFNRLALLPDHEQPMFLMV------LWRIWFVHNE-IIHG-KPSP------SIEA 1538
Query: 402 SKEFLLETTTEFLPI 416
S+ FL L I
Sbjct: 1539 SQRFLQSYMKSLLEI 1553
>emb|CAD41337.2| OJ991113_30.21 [Oryza sativa (japonica cultivar-group)]
gi|50925420|ref|XP_472970.1| OJ991113_30.21 [Oryza
sativa (japonica cultivar-group)]
Length = 541
Score = 189 bits (481), Expect = 2e-46
Identities = 144/537 (26%), Positives = 242/537 (44%), Gaps = 51/537 (9%)
Query: 75 GGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNS 134
GG+GF+D + NQA L++QAWR++Q ++ A +LK Y+PN + A S W +
Sbjct: 2 GGLGFRDLRLFNQALLSRQAWRLIQYHDSLCARILKAKYYPNCELIDAVFPADVSPTWKA 61
Query: 135 IIHGRELILNQGRWSIEDGKSVNLLGHRWLACNERLREGPLD-----TTVSSLMENQTRT 189
+ HG EL+ W I DG+ V + +W+ L+ P + V L+ T +
Sbjct: 62 VEHGLELLKKGLIWRIGDGRKVRIWKDQWIPRQSSLKLSPQNGRCRLRWVHQLINQDTNS 121
Query: 190 WSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEES 249
W I +V S D+ +L+ + ED + W + G +T++S Y A ++
Sbjct: 122 WDADLIKNVCSPLDVNEILKIKLPHRGMEDFLAWHFEKTGVFTVRSAYHLALHNQLKANE 181
Query: 250 RGATSSEPS--KECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICE 307
G++SS S ++ W S+ +A +P K+K+F W++ E L T N ++R +++C IC
Sbjct: 182 LGSSSSSTSGERKIWASLWTAPVPQKVKIFAWRLARECLATMENRKKRKLEIDSTCRICG 241
Query: 308 APREDAAHVFLHC-------PWLRPVWFGSFFQLAPDPSIL--SLPIWLEAKLSQLSNLE 358
ED H + C +R VW PD L S P WL L + N E
Sbjct: 242 LGGEDGFHAVISCTKAAALRSLIREVW------ELPDERFLIRSGPDWLLIILDSI-NAE 294
Query: 359 SGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTE------ 412
S ++ L+ LLW W +RN+ + + VL L +++ E L +T++
Sbjct: 295 SRAKFLL-----LLWRAWFLRNDSVHCSGKAS-VLGSLLFLQSLWESLFMSTSQGKVDDK 348
Query: 413 -FLPIYGGHVNRGIRH---------WTRP----PLGFLKCNTDAGFLRVGNKAAGGYIFK 458
P+ ++ H WT P P+G++K N D F++ A+ G++ +
Sbjct: 349 GKKPVMQSRLSSPDSHERNHTTTMGWTPPPPPRPMGWVKVNVDGSFIQSSEPASAGFVIR 408
Query: 459 DDKGCFV*GNHRQL-HAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQR 517
D G + + R + H SA AEA E V A ++ E D L+
Sbjct: 409 DHTGSVLLTSWRIISHCGSAEEAEATACWEGVNLAAEWVKKPLILETDCANLVSMLTSSG 468
Query: 518 -EKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLALCRSIPPHWCAHLP 573
++ ++ +++ I+ P++ RRE N AH LA+ A+ + W P
Sbjct: 469 FDRAQLCHVLRSIKLLLQALPDFRVQRIRRECNRVAHDLAKFAMRTNHSAVWRMQAP 525
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 189 bits (479), Expect = 3e-46
Identities = 145/557 (26%), Positives = 238/557 (42%), Gaps = 25/557 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNND-RGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M+ + PK ++ S +A+FWW N D RG+HW W L SK++GG+GF++
Sbjct: 584 LPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVD 643
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
N A LAKQ WR++ P++ +A V KG YF N L + K S+ W S+I R L+
Sbjct: 644 DFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVY 703
Query: 144 NQGRWSIEDGKSVNLLGHRWLACN----ERLREGPLDTT--VSSLMENQTRTWSISKITS 197
+ G S+++ W+ + +D + V SL+++++ W+I +
Sbjct: 704 KGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKE 763
Query: 198 VLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEP 257
+ D+ + PI ED + W + G YT+KSGY AR L+ + G T P
Sbjct: 764 LFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR----LDLNEGTTLIGP 819
Query: 258 SKECWRS-I*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
++ I + P K++ FLW+I+ +P NLR+R + + C C A E H
Sbjct: 820 DLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHT 879
Query: 317 FLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVW 376
C R +W + Q+ P I + SG + + +++W +W
Sbjct: 880 LFQCHPARQIW--ALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDS--APYPWIIWYIW 935
Query: 377 KMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTR-----P 431
K RN F +P+ L LAV+ ++ + E E G ++ R R
Sbjct: 936 KARNEKVFENVDKDPMEILLLAVKEAQSW-QEAQVELHSERHGSLSIDSRIRVRDVSQDT 994
Query: 432 PLGFLKCNTDAGFLRVGNKAAGGYIFKDDKG-CFV*GNHRQLHAASALAAEALILREAVF 490
+C D + + G+ G G + S L E L A+
Sbjct: 995 TFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMK 1054
Query: 491 AAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNE 550
+ + V F D L++ E +++++ + +F N+ S R N
Sbjct: 1055 CMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNFSLSLISRSANV 1114
Query: 551 CAHVLARLALCRSIPPH 567
A LAR R++P H
Sbjct: 1115 KADKLAR--KIRTVPHH 1129
>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1197
Score = 187 bits (476), Expect = 6e-46
Identities = 165/580 (28%), Positives = 253/580 (43%), Gaps = 44/580 (7%)
Query: 3 RVERKIVKPSWKRNFDQGSG---------SGLPTYAMAILKFPKQFCHQIASQIARFWW- 52
++++K + SW F G+G + +P YAM+ P C +I S + RFWW
Sbjct: 601 KIKQKAI--SWSSRFLSGAGKQVMLQSVLTAIPVYAMSCFLLPLSLCDRIQSTLTRFWWD 658
Query: 53 RGNNDRGIHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGI 112
+ + R + W W L K GG+GFK+F N A LAKQ+WR+L P+ A VL G
Sbjct: 659 KTDQQRKMCWVGWDRLAVPKVRGGLGFKNFKAYNVALLAKQSWRVLPHPSCLLARVLLGK 718
Query: 113 YFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACNERLRE 172
Y NE+FL A AS W ++ GR+L+ Q W+I + KSV + WLA ++R++
Sbjct: 719 YCQNESFLKALSPTFASHGWRDLLAGRDLLRKQLGWTIGNDKSVLVWQDAWLAHDKRIQP 778
Query: 173 -GPL-----DTTVSSLMENQTRTWSISKITSVLS-LPDLGRVLQTPIRLTEGEDEIFWPY 225
GP D V L + W KI + + + DL VL G D+ W
Sbjct: 779 VGPAPLLSKDWKVKDLFLPNSVDWDEGKIEAAIPFVKDL--VLAIRPSRAGGADKRIWLG 836
Query: 226 RDYGQYTIKSGYIQARSHKELEESRG-ATSSEPSKECWRSI*SARIPHKIKVFLWKIMHE 284
G YT K+GY + + SR S E W + + KI++FLWK +
Sbjct: 837 AKDGLYTTKTGYKATLCDVDSDSSRDPVLSFNWFDEVW----NVQCSPKIRLFLWKAVSG 892
Query: 285 ALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLP 344
ALP L R + C C E ++H +C +++ VW +LAP I
Sbjct: 893 ALPVGSQLAIRIPSFDPVCCRC-GELETSSHALFNCMFVQRVW-----RLAPLEGIDLFL 946
Query: 345 IWLEAK-----LSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAV 399
++ + K L + L S + ++ W +W RN F + + +N A+
Sbjct: 947 VFTDVKLGLSWLKKKKTLPSVGLGYCALYPWICWTLWITRNQKVFSNILFSELETINKAI 1006
Query: 400 EASKE--FLLETTTEFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIF 457
+ +KE F E + F + G+R L +TDA + + A G+
Sbjct: 1007 QDAKEWQFAQEPNSRFQV----RSSMGLRAEVF-SLNSTVIHTDAAWSVLTCSAGLGWTL 1061
Query: 458 KDDKGCFV*GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQR 517
K + H S L AEAL++ A+++A NL + V+ ++D L A Q
Sbjct: 1062 KSPGIPLKKNSALSEHVPSPLVAEALVVHSALWSAHNLGLHDVILKSDCQVLTMAIISQF 1121
Query: 518 EKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
EI I++DI F ++ R N A LA+
Sbjct: 1122 PLSEIHGILQDITSSSSSFSSFSCCHIPRTANVIADSLAK 1161
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase
Length = 1333
Score = 185 bits (469), Expect = 4e-45
Identities = 141/498 (28%), Positives = 222/498 (44%), Gaps = 36/498 (7%)
Query: 28 YAMAILKFPKQFCHQIASQIARFWWRG-NNDRGIHWKNWASLMFSKAEGGMGFKDFAVLN 86
YAM+ K K C + S ++ FWW + R HW + + SK GG+GF+D N
Sbjct: 805 YAMSCFKLTKTTCVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFN 864
Query: 87 QACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELILNQG 146
QA LAKQAWR+LQ PN+ +A K Y+ E+FL A+ K S+AW SI+HGR+L++
Sbjct: 865 QALLAKQAWRLLQFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGF 924
Query: 147 RWSIEDGKSVNLLGHRWLACN------ERLREGPLDTTVSSLMENQTRTWSISKITSVLS 200
R + +G S ++ W+ N ++ LD V L+ + R ++ +
Sbjct: 925 RKKVGNGSSTSVWMDPWIYDNDPRLPLQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFY 984
Query: 201 LPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGY---IQARSHKELEESRGATSSE 256
D+ ++ + P+ +D W + G+Y++KSGY Q + + E+R S+
Sbjct: 985 PADIEIIVKRNPV--VSMDDFWVWLHSKSGEYSVKSGYWLAFQTNKPELIREARVQPSTN 1042
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
KE I S KIK+FLW+I+ ALP + RR + C +C E HV
Sbjct: 1043 GLKE---KIWSTLTSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHV 1099
Query: 317 FLHCPWLRPVWF-----GSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFL 371
C R VW S F ++ LE K L EQ+ ++
Sbjct: 1100 LFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLI-----PEQIKKSWPWV 1154
Query: 372 LWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRG--IRHWT 429
LW +WK R+ F G +P+ + + +E+ L G V W
Sbjct: 1155 LWRLWKNRDKLFFEGTIFSPLKSIEKIRDDVQEWFLAQALVASVDAGETVCSAPCPSSWE 1214
Query: 430 RPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAV 489
PPLG++KCN + G ++ +DD G + LH+ A + + ++A+
Sbjct: 1215 PPPLGWVKCNISGVWSGKKRVCGGAWVLRDDHGKVL------LHSRRAF-SNLSVKKDAL 1267
Query: 490 FAAMNLNMDRVVFEADNL 507
F + + RV D+L
Sbjct: 1268 FCCVKWAL-RVCLATDSL 1284
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,063,506,896
Number of Sequences: 2540612
Number of extensions: 45618883
Number of successful extensions: 103221
Number of sequences better than 10.0: 342
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 102371
Number of HSP's gapped (non-prelim): 490
length of query: 584
length of database: 863,360,394
effective HSP length: 134
effective length of query: 450
effective length of database: 522,918,386
effective search space: 235313273700
effective search space used: 235313273700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)
Lotus: description of TM0113.14