BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.2
(150 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 123 8e-28
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 110 9e-24
gb|AAO23078.1| polyprotein [Glycine max] 107 4e-23
gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsi... 106 1e-22
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 103 8e-22
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 102 1e-21
ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|1545160... 102 1e-21
emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa (japonica cultivar... 101 4e-21
gb|AAP68389.1| putative polyprotein [Oryza sativa (japonica cult... 100 5e-21
ref|XP_470719.1| putative polyprotein [Oryza sativa] gi|18921316... 100 7e-21
emb|CAD40196.2| OSJNBb0043H09.2 [Oryza sativa (japonica cultivar... 99 2e-20
emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa (japonica cultiva... 99 2e-20
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 99 2e-20
gb|AAP54661.1| putative plant disease resistance polyprotein [Or... 98 5e-20
ref|XP_471551.1| OSJNBa0019J05.12 [Oryza sativa (japonica cultiv... 98 5e-20
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 98 5e-20
gb|AAP53494.1| putative retroelement [Oryza sativa (japonica cul... 97 6e-20
gb|AAO37507.1| retrotransposon protein, putative, unclassified [... 97 1e-19
ref|XP_507143.1| PREDICTED OJ1449_C01.20 gene product [Oryza sat... 97 1e-19
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 96 2e-19
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 123 bits (309), Expect = 8e-28
Identities = 61/144 (42%), Positives = 91/144 (62%), Gaps = 3/144 (2%)
Query: 7 VFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASLLK 66
VF+KLR R+NSV R C +L A Y+GP+ I++RIG VAYRL+LPEG ++H VFH S LK
Sbjct: 1249 VFLKLRPYRQNSVTKRVCQKLAAKYFGPFEIMERIGKVAYRLKLPEGSKIHLVFHVSQLK 1308
Query: 67 EAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPTWK 126
+ +G++ + L + LT + V P +V+ +R+ E L + + WQG P E TW+
Sbjct: 1309 QVLGDHHQVIPLPEVLTADNEFVVVPEAVLETRY---NEDGLLEALVHWQGLPVHEDTWE 1365
Query: 127 DTLNIRSQFPVFNLEDKVDLSAGG 150
+++ QFP L+DK+ + GG
Sbjct: 1366 IAKDLKKQFPGLALQDKLHVEGGG 1389
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 110 bits (274), Expect = 9e-24
Identities = 60/149 (40%), Positives = 85/149 (56%), Gaps = 2/149 (1%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
FE EWV++KLR R++SV R +L+ Y+GP+ ++ RIG VAY+LQLPE +HPVF
Sbjct: 1477 FEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHSTIHPVF 1536
Query: 61 HASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPA 120
H S LK AV + +L L+ + P ++ R + P+V +QW G
Sbjct: 1537 HVSQLKRAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTNSG--PEVLVQWSGLST 1594
Query: 121 DEPTWKDTLNIRSQFPVFNLEDKVDLSAG 149
E TW+ L + Q+P F+LEDKV L G
Sbjct: 1595 LESTWEPLLTLVQQYPDFDLEDKVSLLRG 1623
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 107 bits (268), Expect = 4e-23
Identities = 53/144 (36%), Positives = 80/144 (54%)
Query: 7 VFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASLLK 66
V +KL+ R++S V R +L+ Y+GP+ ++ +IG VAY+L+LP R+HPVFH S LK
Sbjct: 1358 VLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQLK 1417
Query: 67 EAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPTWK 126
G L E + P ++ SR R + + Q+ +QW+ DE TW+
Sbjct: 1418 PFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDEATWE 1477
Query: 127 DTLNIRSQFPVFNLEDKVDLSAGG 150
D +I++ +P FNLEDKV G
Sbjct: 1478 DIEDIKASYPTFNLEDKVVFKGEG 1501
>gb|AAC69378.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411577|pir||F84519 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 945
Score = 106 bits (264), Expect = 1e-22
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
F+ +WV ++++ R+ ++ R +L+ +YGP+ + + G VAYRL LPEG R+HPVF
Sbjct: 798 FQVGDWVLLRIQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRIHPVF 857
Query: 61 HASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPA 120
H SLLK VG+ ++ L L + P +V+ R+ ++ + + + +QW+G
Sbjct: 858 HVSLLKPWVGDGEPDMGQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHI 917
Query: 121 DEPTWKDTLNIRSQFP--VFNLEDKVDL 146
++ TW++ + + FP V NLEDKV L
Sbjct: 918 EDATWEEYDQLAASFPEFVLNLEDKVRL 945
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 103 bits (257), Expect = 8e-22
Identities = 52/150 (34%), Positives = 85/150 (56%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
F+ + VF+KL+ + SVV R C +L Y+GP+PI++R+G+VAY+LQLP +VH VF
Sbjct: 1364 FQVGDSVFLKLQPYAQTSVVNRPCHKLAMKYFGPFPILERVGSVAYKLQLPPASQVHSVF 1423
Query: 61 HASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPA 120
H S LK +V ++ L + +V + P ++ R + + + QV ++W P
Sbjct: 1424 HVSQLKPSVPSHVPVYTSLPDVVALDVEDLIPTEILDCRMVKKGNAAIVQVRVRWGSLPD 1483
Query: 121 DEPTWKDTLNIRSQFPVFNLEDKVDLSAGG 150
+ TW+D IR++FP + + AGG
Sbjct: 1484 NMATWEDYDVIRTRFPAVSALGQAGSPAGG 1513
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 102 bits (255), Expect = 1e-21
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
FE ++V++KL+ R+ SVV R +L+ Y+GPY II R G VAY+L LP +VHPVF
Sbjct: 1362 FEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGEVAYKLALPSYSQVHPVF 1421
Query: 61 HASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPA 120
H S LK VGN S + L + ++V P V+ + RQ + +V ++W +P
Sbjct: 1422 HVSQLKVLVGNVSTTVHLPSVM--QDVFEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPL 1479
Query: 121 DEPTWKDTLNIRSQFPVF 138
+E TW+ +++ FP F
Sbjct: 1480 EEATWEFLFDLQKTFPEF 1497
>ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|15451608|gb|AAK98732.1|
Putative retroelement [Oryza sativa]
Length = 1923
Score = 102 bits (255), Expect = 1e-21
Identities = 49/134 (36%), Positives = 81/134 (59%), Gaps = 5/134 (3%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+WVF+KL+ + SV +R C +L +YGP+ I+ R+G VAY+LQLP+ +HPVFH S
Sbjct: 841 DWVFLKLQPYVQKSVASRACHKLAFKFYGPFQILARVGTVAYKLQLPDDSTIHPVFHVSQ 900
Query: 65 LKEAVG-NNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEP 123
LK A G + V+ +L L ++V+P ++ R + T+ QV + W A++
Sbjct: 901 LKVAHGFKHQVQSRLPKFLK----STVYPLQILDQRLIRKGNRTVSQVLVYWSDSVAEDA 956
Query: 124 TWKDTLNIRSQFPV 137
TW+D +++ +FP+
Sbjct: 957 TWEDREDLQQRFPM 970
>emb|CAE03018.3| OSJNBa0091D06.3 [Oryza sativa (japonica cultivar-group)]
gi|50926772|ref|XP_473325.1| OSJNBa0091D06.3 [Oryza
sativa (japonica cultivar-group)]
Length = 753
Score = 101 bits (251), Expect = 4e-21
Identities = 54/137 (39%), Positives = 77/137 (55%), Gaps = 5/137 (3%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
FE +WV++KL+ + SV R +L Y+GPY + +IG VAY+LQLP +HPVF
Sbjct: 307 FEVGDWVYLKLQPYVQTSVAVRANHKLAFKYFGPYQVTAKIGTVAYQLQLPSSTSIHPVF 366
Query: 61 HASLLKEAVG-NNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKP 119
H S LK A+G V+ QL +V P ++ R T R S + QV IQW
Sbjct: 367 HVSQLKSAIGFTGPVQHQLPASTAPLQV----PLRILDRRLTKRGNSAVAQVLIQWSASV 422
Query: 120 ADEPTWKDTLNIRSQFP 136
++ TW+D ++RS+FP
Sbjct: 423 PEDATWEDLDDLRSRFP 439
>gb|AAP68389.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50917833|ref|XP_469313.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1246
Score = 100 bits (250), Expect = 5e-21
Identities = 48/138 (34%), Positives = 79/138 (56%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
FE + V++K++ R+N+ R +L A +YGP+ ++++IG VAY+LQLPE +HPVF
Sbjct: 1107 FELGDMVYLKMQPYRQNAFGLRGSLKLRAKFYGPFRVLEKIGKVAYKLQLPEEANIHPVF 1166
Query: 61 HASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPA 120
H S LK+ VG ++ L L + + P +V+ R RQ + Q I W+
Sbjct: 1167 HVSQLKKHVGRQAIPLPNLPLVGADGTVKTEPLAVLARRVIPRQNEPVVQWLIHWENLTP 1226
Query: 121 DEPTWKDTLNIRSQFPVF 138
++ TW++ I++ FP F
Sbjct: 1227 EDATWENATFIQATFPHF 1244
>ref|XP_470719.1| putative polyprotein [Oryza sativa] gi|18921316|gb|AAL82521.1|
putative polyprotein [Oryza sativa]
Length = 408
Score = 100 bits (249), Expect = 7e-21
Identities = 49/130 (37%), Positives = 77/130 (58%)
Query: 7 VFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASLLK 66
VF+KL+ ++SVV R P+L ++GP+ I+++IG AYRLQLP+ +HPVFH S LK
Sbjct: 257 VFLKLQPYTQSSVVNRPYPKLAFKFFGPFEILEKIGQSAYRLQLPDSSLIHPVFHVSQLK 316
Query: 67 EAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPTWK 126
V +++ L H + A V P ++ R + +T QV I+W PA + TW+
Sbjct: 317 AHVPDHTPVFTSLPHPVVLDAADVWPEEILDRRLVKKGNATHVQVLIKWSSLPAHQATWE 376
Query: 127 DTLNIRSQFP 136
D ++++FP
Sbjct: 377 DYEVLKTRFP 386
>emb|CAD40196.2| OSJNBb0043H09.2 [Oryza sativa (japonica cultivar-group)]
gi|50921815|ref|XP_471268.1| OSJNBb0043H09.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1409
Score = 99.4 bits (246), Expect = 2e-20
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+WV++KL+ + SV R +L Y+GP+ ++ R+GAVAYRLQLP +HPVFH S
Sbjct: 1211 DWVYLKLQPYIQTSVTKRANHKLEFRYFGPFQVLDRVGAVAYRLQLPSYSAIHPVFHVSQ 1270
Query: 65 LKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPT 124
L+ A G + + L GE P + R T + T+ Q+ W PA+E T
Sbjct: 1271 LRAAAGFSKPVMSQLPSSLGELQI---PLQFLDKRLTKKGNKTVVQLLTHWSDSPAEEAT 1327
Query: 125 WKDTLNIRSQFP 136
W+D +R++FP
Sbjct: 1328 WEDMEELRARFP 1339
>emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa (japonica cultivar-group)]
gi|50928515|ref|XP_473785.1| OSJNBa0041A02.23 [Oryza
sativa (japonica cultivar-group)]
Length = 1373
Score = 99.4 bits (246), Expect = 2e-20
Identities = 50/138 (36%), Positives = 79/138 (57%)
Query: 1 FEGFEWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVF 60
F+ + V++K++ R+N+ R +L A +YGP+ I++RIG VAY LQLPE +HPVF
Sbjct: 1234 FQEGDMVYLKMQPYRQNAFGLRGSLKLRAKFYGPFRILKRIGKVAYHLQLPEEAGIHPVF 1293
Query: 61 HASLLKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPA 120
H S LK+ VGN V L L + + P +V+ R R+ + Q + W+
Sbjct: 1294 HVSQLKKHVGNLVVPLPNLPLVDEDGNIKTEPVAVLARRVVPRRNEPVTQWLVHWENLSP 1353
Query: 121 DEPTWKDTLNIRSQFPVF 138
++ TW+D+ I++ FP F
Sbjct: 1354 EDATWEDSAFIQATFPHF 1371
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 99.0 bits (245), Expect = 2e-20
Identities = 47/135 (34%), Positives = 76/135 (55%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+ V++KL+ R+ + R +L + +YGP+ I++++G VAY+LQLPEG +HPVFH S
Sbjct: 1451 DMVYLKLQPYRQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQ 1510
Query: 65 LKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPT 124
LK+ +G+ +V + L + + P +V+ R R + Q + W E T
Sbjct: 1511 LKKHIGSRAVPMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVLWHNLSPSEAT 1570
Query: 125 WKDTLNIRSQFPVFN 139
W+D I+S FP FN
Sbjct: 1571 WEDASMIQSMFPSFN 1585
>gb|AAP54661.1| putative plant disease resistance polyprotein [Oryza sativa
(japonica cultivar-group)] gi|37536144|ref|NP_922374.1|
putative plant disease resistance polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|10122041|gb|AAG13430.1| putative plant disease
resistance polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 921
Score = 97.8 bits (242), Expect = 5e-20
Identities = 51/144 (35%), Positives = 79/144 (54%)
Query: 7 VFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASLLK 66
VF+KL+ ++SVV R P+L ++GP+ +++RIG AYRL LP VHPVFH S LK
Sbjct: 765 VFLKLQPYAQSSVVNRPYPKLAYKFFGPFTVLERIGVAAYRLDLPASSTVHPVFHVSQLK 824
Query: 67 EAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPTWK 126
V +++ L + A V P +++ R R + QV ++W PAD TW+
Sbjct: 825 AQVPDHTPVYTSLPSPVVLDAADVVPEAILERRLVKRGNAAHVQVLLKWSLLPADHATWE 884
Query: 127 DTLNIRSQFPVFNLEDKVDLSAGG 150
D ++++FP + + AGG
Sbjct: 885 DYHVVKTRFPDAPAWGQAETPAGG 908
>ref|XP_471551.1| OSJNBa0019J05.12 [Oryza sativa (japonica cultivar-group)]
gi|38346427|emb|CAD40214.2| OSJNBa0019J05.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1817
Score = 97.8 bits (242), Expect = 5e-20
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+WV++KL+ + SV R +L Y+GP+ I +IG VAY+LQLP +HPVFH S
Sbjct: 1475 DWVYLKLQPYVQTSVAVRANHKLAFKYFGPFQITAQIGTVAYKLQLPPTSSIHPVFHVSQ 1534
Query: 65 LKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPT 124
LK A G + HL A P+ ++ R + ST+ QV +QW P ++ T
Sbjct: 1535 LKSATGFTG---HVQSHLPSSISALQVPWRILDRRLAKKGNSTISQVLVQWSESPPEDAT 1591
Query: 125 WKDTLNIRSQFP 136
W+D + ++FP
Sbjct: 1592 WEDYEELHARFP 1603
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 97.8 bits (242), Expect = 5e-20
Identities = 45/135 (33%), Positives = 79/135 (58%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+ V++KL+ R+++ R +L + +YGP+ ++Q+IG +AY+LQLP+ ++HPVFH S
Sbjct: 1340 DMVYLKLKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQ 1399
Query: 65 LKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPT 124
LK+ +G +++ + L + + P +V+ R R+ + Q I WQ E T
Sbjct: 1400 LKKHLGKHAIPMSNLPSVGPDGQIKTEPLAVLQRRMVPRKGVAVTQWLILWQNLSPAEAT 1459
Query: 125 WKDTLNIRSQFPVFN 139
W+D I++ FP FN
Sbjct: 1460 WEDASVIQAMFPSFN 1474
>gb|AAP53494.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533810|ref|NP_921207.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21672107|gb|AAM74469.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|18652523|gb|AAL77156.1| Putative polyprotein [Oryza
sativa]
Length = 999
Score = 97.4 bits (241), Expect = 6e-20
Identities = 45/130 (34%), Positives = 77/130 (58%)
Query: 7 VFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASLLK 66
V++KL+ + S+ R C +++ Y+GPY +++R+G VAYRL LP G ++HPV H SLLK
Sbjct: 860 VYLKLQPFAQLSIAQRSCQKISFRYFGPYTVLERVGQVAYRLDLPAGSQIHPVVHVSLLK 919
Query: 67 EAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPTWK 126
AV +++ L ++ + P V+ R ++ +P IQW G PA+ TW+
Sbjct: 920 AAVKPDTIVSPELPLQITDDSVLLQPEVVLRRSLIKRGKAAVPYGLIQWTGVPAELATWE 979
Query: 127 DTLNIRSQFP 136
+ +++ +FP
Sbjct: 980 NLRHLKLRFP 989
>gb|AAO37507.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|50916505|ref|XP_468649.1|
putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1155
Score = 96.7 bits (239), Expect = 1e-19
Identities = 51/144 (35%), Positives = 78/144 (53%)
Query: 7 VFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASLLK 66
VF+KL+ ++SVV R P+L ++GP+ +++RIG AYRL LP VHPVFH S LK
Sbjct: 999 VFLKLQPYAQSSVVNRPYPKLAYKFFGPFTVLERIGVAAYRLDLPASSTVHPVFHVSQLK 1058
Query: 67 EAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPTWK 126
V +++ L + A V P +++ R R + QV ++W PAD TW+
Sbjct: 1059 AQVPDHTPVYTSLPSPVVLDAADVVPEAILERRLVKRGNAAHVQVLLKWSLLPADHATWE 1118
Query: 127 DTLNIRSQFPVFNLEDKVDLSAGG 150
D ++++FP + AGG
Sbjct: 1119 DYHVVKTRFPDAPAWGQAKTPAGG 1142
>ref|XP_507143.1| PREDICTED OJ1449_C01.20 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 299
Score = 96.7 bits (239), Expect = 1e-19
Identities = 46/134 (34%), Positives = 78/134 (57%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+ V++KL+ R+N++ R +L + +YGP+ + Q+IG VAY+LQLPEG +HPVFH S
Sbjct: 164 DMVYLKLQPYRQNALGVRGSLKLRSKFYGPFRVEQKIGQVAYKLQLPEGANIHPVFHVSQ 223
Query: 65 LKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPT 124
LK+ +G ++V + L + + P +++ R R+ + Q + W+ + T
Sbjct: 224 LKKHLGRHAVPMPNLPLVGPDGQIKAEPVAILQRRMIPRRGEPVVQWLVLWRNLSPADAT 283
Query: 125 WKDTLNIRSQFPVF 138
W+D IR+ FP F
Sbjct: 284 WEDATFIRATFPNF 297
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 95.5 bits (236), Expect = 2e-19
Identities = 46/134 (34%), Positives = 77/134 (57%)
Query: 5 EWVFIKLRALRENSVVTRDCPQLTAPYYGPYPIIQRIGAVAYRLQLPEGGRVHPVFHASL 64
+ V++KL+ R+ ++ R +L + YYGP+ +I+++GAVAY+LQLP+G +HPVFH S
Sbjct: 1476 DMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQ 1535
Query: 65 LKEAVGNNSVELQLLDHLTGEEVASVHPFSVITSRFTTRQESTLPQVWIQWQGKPADEPT 124
LK+ +G ++ + L + + P +V+ R R + Q I W+ E T
Sbjct: 1536 LKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEAT 1595
Query: 125 WKDTLNIRSQFPVF 138
W+D I++ FP F
Sbjct: 1596 WEDASYIQAAFPNF 1609
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,133,230
Number of Sequences: 2540612
Number of extensions: 10948472
Number of successful extensions: 25065
Number of sequences better than 10.0: 668
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 24011
Number of HSP's gapped (non-prelim): 681
length of query: 150
length of database: 863,360,394
effective HSP length: 126
effective length of query: 24
effective length of database: 543,243,282
effective search space: 13037838768
effective search space used: 13037838768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0112.2