BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0112.11
(1331 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 1499 0.0
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 1433 0.0
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 1431 0.0
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 1280 0.0
gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis tha... 1149 0.0
gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25... 1149 0.0
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi... 1146 0.0
gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum] 1097 0.0
gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana] 1076 0.0
gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cult... 1033 0.0
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 1016 0.0
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 947 0.0
ref|XP_474043.1| OSJNBb0034I13.10 [Oryza sativa (japonica cultiv... 928 0.0
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 918 0.0
gb|AAP51989.1| putative pol polyprotein [Oryza sativa (japonica ... 912 0.0
ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultiv... 879 0.0
gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsi... 876 0.0
ref|NP_912850.1| unnamed protein product [Oryza sativa (japonica... 872 0.0
ref|XP_506380.1| PREDICTED OSJNBa0007H12.22 gene product [Oryza ... 855 0.0
gb|AAU90089.1| putative polyprotein [Oryza sativa (japonica cult... 855 0.0
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 1499 bits (3881), Expect = 0.0
Identities = 759/1353 (56%), Positives = 976/1353 (72%), Gaps = 68/1353 (5%)
Query: 1 MAESSNFSQPAVPKFDGHYDHWALLMENLLRSKEYWPIVADGVPALA----PNANAEQIK 56
M+ S F QPA+P+FDG+YD W++ MEN LRS+E W +V +G+PA+ P + A++
Sbjct: 1 MSSSEKFVQPAIPRFDGYYDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSA 60
Query: 57 IHEEAKLKDLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALR 116
+ EEAKLKDLK KN+LFQ+I+R ILETIL+ TSK IW+SM+ K QGSTKVKR QLQALR
Sbjct: 61 V-EEAKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALR 119
Query: 117 REFEVLGMKEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIE 176
+EFE+L MKEGE + + RTL++VNKMK GE ++++ IV KILRSLT KFNYVVCSIE
Sbjct: 120 KEFELLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIE 179
Query: 177 ESNDVDTITIDQLQSSLLVQEQRMKGYREEEQALRATSSGKSERGRGR---TGNRGRGRG 233
ESND+ T++ID+L SLLV EQR+ G+ +EEQAL+ T + +GRGR G+RGRGRG
Sbjct: 180 ESNDLSTLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRG 239
Query: 234 RG--SFNKESVECYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTT 291
RG N+ VECYKCH LGHFQYECP WE++ANYAEL E+ EELLLMA E + +
Sbjct: 240 RGRSGTNRAIVECYKCHNLGHFQYECPEWEKNANYAELEEE-EELLLMAYVEQNQANRD- 297
Query: 292 LKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKL 351
+VWFLDSGCSNHM GS+EWF L+E F TVKL
Sbjct: 298 ---------------------------EVWFLDSGCSNHMTGSKEWFSELEEGFNRTVKL 330
Query: 352 GDDSIMTVKGKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRI 411
G+D+ M+V GKG VK+++ G+ QV EVY++PEL+NNLLS+GQL ER L+I + C++
Sbjct: 331 GNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKV 390
Query: 412 YHKDKGLIIQSRMSSNRMFAVIATMIAPT--CFST--TIKDESELWHKRYGHLGYSGLKI 467
YH KG I+++ MS NRMF ++A+ C T + E+ LWH R+GHL GLK+
Sbjct: 391 YHPSKGAIMETNMSGNRMFFLLASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKL 450
Query: 468 LAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKS 527
LA K MV GLP+L + C CL GKQH + +K++W++ +LQL+HSDICGPI P S
Sbjct: 451 LAHKKMVIGLPILKATKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPIS 510
Query: 528 NSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFN 587
+S KRY ++FIDDF RKTWVY L EKS A +FK FK EKE G L+CLRTDRGGEF
Sbjct: 511 HSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFT 570
Query: 588 SREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNW 647
S EF EFC +GI RQLTA++TPQQNGV+ERKNRTIMN VR ML+E++VP+ FW EA W
Sbjct: 571 SNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKW 630
Query: 648 SVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIY 707
SV+IQNRSPT AV+ +TPEE WSG+KP V +FR+FGC+ Y H+PD +R KLD++S KC++
Sbjct: 631 SVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVF 690
Query: 708 LGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQ-----MEFFDEMVDTNEV 762
LG SEESKA+RLYDPV KKI+I++DVVFDE WDW + +E DE + N
Sbjct: 691 LGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQADVEAKEVTLECGDEDDEKNSE 750
Query: 763 STVPILDEVEHQVHSETN-DTSPELEDNGEASVSASPGVAEEERERRGRRNVQQPVWMKE 821
PI + V S+ N +SP L +S + SP A+ RERR P WM +
Sbjct: 751 VVEPIAVASPNHVGSDNNVSSSPIL---APSSPAPSPVAAKVTRERR------PPGWMAD 801
Query: 822 FVSGE-DLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNT 880
+ +GE + +E +S + + +DP+ +D+A K WR+AM+ EI++I +NNT
Sbjct: 802 YETGEGEEIEENLSVMLL------MMMTEADPIQFDDAVKDKIWREAMEHEIESIVKNNT 855
Query: 881 WQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWD 940
W+L LPKG IGVKWVYKTKLNE GE++K+KARLVAKGYAQ GID+TEVFAPVAR D
Sbjct: 856 WELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLD 915
Query: 941 TIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYG 1000
T+RTILAI++ W +FQLDVKSAFLHG++ E V+V QP+G+ G E KVYKL KALYG
Sbjct: 916 TVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLRKALYG 975
Query: 1001 LRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLI 1060
L+QAPRAWYSRI++YF K+ F R S+HTL+ K G +IVSLYVDDLI+TG+ + +
Sbjct: 976 LKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKT-RVGNILIVSLYVDDLIFTGSDKAMC 1034
Query: 1061 SEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNP 1120
EFK SM EF+MSDLGKM +FLG+E+ Q+ GIF+CQ +YA+EVL RFGM SN V+NP
Sbjct: 1035 DEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNP 1094
Query: 1121 VVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIV 1180
+VPGTKL K G +VD T +KQ++GSLMYLTV+RPDLMY V L+SR+M P H
Sbjct: 1095 IVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAA 1154
Query: 1181 KRVMRYLNGTVDMGIQYRR--SGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWS 1238
KR++RYL GTV++GI YRR + S+KL+++TDSDYAGD++DR+STSG+VF++ SG+I W+
Sbjct: 1155 KRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWA 1214
Query: 1239 SKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNP 1298
SKKQ VV+LSTTEAE+IAA CACQC+WLR++L LG + + I CDNSSTI+LSK+P
Sbjct: 1215 SKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHP 1274
Query: 1299 VMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
V+HG+SKHI VR+H+LRDLV ++L +C TE
Sbjct: 1275 VLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTE 1307
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
gi|25301683|pir||E86451 probable copia-type polyprotein,
28768-32772 [imported] - Arabidopsis thaliana
Length = 1334
Score = 1433 bits (3710), Expect = 0.0
Identities = 720/1345 (53%), Positives = 947/1345 (69%), Gaps = 76/1345 (5%)
Query: 12 VPKFDGHYDHWALLMENLLRSKEYWPIVADGVPALAPNA---NAEQIKIHEEAKLKDLKA 68
+PKFDG Y+HWA+LMENL+RSKE+W I+ G+P N A++ ++ E+ +KD K
Sbjct: 9 IPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKT-VKDHKV 67
Query: 69 KNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGE 128
KNYLF SI+++IL+TIL ETSK++W+SM+ K QG+ +V+ QLQ LRR FEVL MK GE
Sbjct: 68 KNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGE 127
Query: 129 TVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQ 188
T+ YF+R + I N M+ GE + ++ +VEKILR+L EKF YVVC+IEESN++ +T+D
Sbjct: 128 TITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDG 187
Query: 189 LQSSLLVQEQRMKGYREEEQALRATSSGKSERGRGRTGNRGRGRGRGSF--------NKE 240
LQSSL+V EQ + + EE+ L+A + + + GRGR G+ RGRGRG + N++
Sbjct: 188 LQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRD 247
Query: 241 SVECYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKK 300
+VEC+KCHK+GH++ ECP+WE+ ANY E+ ED LLLMA E G ++K
Sbjct: 248 TVECFKCHKMGHYKAECPSWEKEANYVEMEED---LLLMAHVEQ----------IGDEEK 294
Query: 301 SLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVK 360
++WFLDSGCSNHMCG+REWF LD F V+LGDD M V+
Sbjct: 295 ------------------QIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVE 336
Query: 361 GKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHK-DKGLI 419
GKG ++L++ G IQV ++VYF+P LKNNL S+GQL ++ L + C ++HK +K ++
Sbjct: 337 GKGKLRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMV 396
Query: 420 IQSRMSSNRMFAVIATM-----IAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMV 474
+ S M+ NRMF V A + T I + +WHKR+GHL + GL+ LA+K MV
Sbjct: 397 MHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMV 456
Query: 475 KGLPM--LGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKR 532
KGLP LGE + C+ CLKGKQ + P++S W++ + LQL+H+DICGPI P S S KR
Sbjct: 457 KGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKR 516
Query: 533 YFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFT 592
Y + FIDDF RK W YLLSEKS + FK+FK E+ESG+KL CLR+DRGGE+NSREF
Sbjct: 517 YILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFD 576
Query: 593 EFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQ 652
E+C+ GIKRQLTA+YTPQQNGV+ERKNR++MNM RCML E VPR+FWPEAV ++VYI
Sbjct: 577 EYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYIL 636
Query: 653 NRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSE 712
NRSP+ A+ +ITPEE WS KPSV RIFG +AYA VP +R KLD +SIKC+ G S+
Sbjct: 637 NRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSK 696
Query: 713 ESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDEVE 772
ESKAYRLYDP + KI+I+RDV FDE GW+W + + E + D E+
Sbjct: 697 ESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEG--PEIN 754
Query: 773 HQVHSETNDTSPELEDNGEASVSASPGVAEEERERRGRRNVQQPVWMKEFVSG------- 825
H + +T E E E P V G R QQPVWMK++V G
Sbjct: 755 HNGQQDQEETEEEEETVAETVHQNLPAVGTG-----GVRQRQQPVWMKDYVVGNARVLIT 809
Query: 826 EDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAE 885
+D DE ++ F+ D DP+ ++EAA+ + WRKAM+ EI +IE NNTW+L E
Sbjct: 810 QDEEDEVLALFIGPD----------DPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVE 859
Query: 886 LPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTI 945
LP+ K IG+KW++KTK NEKGE++K KARLVAKGY Q+ G+DF EVFAPVA+WDTIR I
Sbjct: 860 LPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLI 919
Query: 946 LAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAP 1005
L +AA +GW+VFQLDVKSAFLHG + E VFV+QP+G++V KVYKL KALYGL+QAP
Sbjct: 920 LGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAP 979
Query: 1006 RAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKA 1065
RAWYSRI+ +F K+GF + +HTL+VK+ E ++VS+YVDDLIYTG+ +I FK
Sbjct: 980 RAWYSRIEEFFGKEGFEKCYCEHTLFVKK-ERSDFLVVSVYVDDLIYTGSSMEMIEGFKN 1038
Query: 1066 SMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGT 1125
SM EF M+DLGKM YFLGVE++Q+ GIF+ Q KYA E+++++GM+ N V+NP+VPG
Sbjct: 1039 SMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQ 1098
Query: 1126 KLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMR 1185
KL K G G VD T++KQ+IGSL YLT +RPDL++SV+LVSRYME P E H+ VKR++R
Sbjct: 1099 KLTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILR 1158
Query: 1186 YLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVV 1245
Y+ GT+D+GIQY R G+ +L+ + DSDYAGDVDDRKSTSGYVFMLG G+IAW+SKKQ +V
Sbjct: 1159 YVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIV 1218
Query: 1246 SLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSK 1305
+LSTTEAEF++A ACQ +WLR +L +G Q + ++CDNSSTIKLSKNPV+HGRSK
Sbjct: 1219 TLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSK 1278
Query: 1306 HINVRYHFLRDLVRDGRIELVHCST 1330
HI+VRYHFLR+LV++G I L +C+T
Sbjct: 1279 HIHVRYHFLRELVKEGTIRLDYCTT 1303
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 1431 bits (3704), Expect = 0.0
Identities = 719/1345 (53%), Positives = 946/1345 (69%), Gaps = 76/1345 (5%)
Query: 12 VPKFDGHYDHWALLMENLLRSKEYWPIVADGVPALAPNA---NAEQIKIHEEAKLKDLKA 68
+PKFDG Y+HWA+LMENL+RSKE+W I+ G+P N A++ ++ E+ +KD K
Sbjct: 9 IPKFDGDYEHWAMLMENLIRSKEWWDIIETGIPRPERNVILTGAQRTELAEKT-VKDHKV 67
Query: 69 KNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGE 128
KNYLF SI+++IL+TIL ETSK++W+SM+ K QG+ +V+ QLQ LRR FEVL MK GE
Sbjct: 68 KNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGE 127
Query: 129 TVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQ 188
T+ YF+R + I N M+ GE + ++ +VEKILR+L EKF YVVC+IEESN++ +T+D
Sbjct: 128 TITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKELTVDG 187
Query: 189 LQSSLLVQEQRMKGYREEEQALRATSSGKSERGRGRTGNRGRGRGRGSF--------NKE 240
LQSSL+V EQ + + EE+ L+A + + + GRGR G+ RGRGRG + N++
Sbjct: 188 LQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRD 247
Query: 241 SVECYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKK 300
+VEC+KCHK+GH++ ECP+WE+ ANY E+ ED LLLMA E G ++K
Sbjct: 248 TVECFKCHKMGHYKAECPSWEKEANYVEMEED---LLLMAHVEQ----------IGDEEK 294
Query: 301 SLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVK 360
++WFLDSGCSNHMCG+REWF LD F V+LGDD M V+
Sbjct: 295 ------------------QIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVE 336
Query: 361 GKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHK-DKGLI 419
GKG ++L++ G IQV ++VYF+P LKNNL S+GQL ++ L + C ++HK +K ++
Sbjct: 337 GKGKLRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMV 396
Query: 420 IQSRMSSNRMFAVIATM-----IAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMV 474
+ S M+ NRMF V A + T I + +WHKR+GHL + GL+ LA+K MV
Sbjct: 397 MHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMV 456
Query: 475 KGLPM--LGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKR 532
KGLP LGE + C+ CLKGKQ + P++S W++ + LQL+H+DICGPI P S S KR
Sbjct: 457 KGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKR 516
Query: 533 YFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFT 592
Y + FIDDF RK W YLLSEKS + FK+FK E+ESG+KL CLR+DRGGE+NSREF
Sbjct: 517 YILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFD 576
Query: 593 EFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQ 652
E+C+ GIKRQLTA+YTPQQNGV+ERKNR++MNM RCML E VPR+FWPEAV ++VYI
Sbjct: 577 EYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYIL 636
Query: 653 NRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSE 712
NRSP+ A+ +ITPEE WS KPSV RIFG +AYA VP +R KLD +SIKC+ G S+
Sbjct: 637 NRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSK 696
Query: 713 ESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDEVE 772
ESKAYRLYDP + KI+I+RDV FDE GW+W + + E + D E+
Sbjct: 697 ESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEG--PEIN 754
Query: 773 HQVHSETNDTSPELEDNGEASVSASPGVAEEERERRGRRNVQQPVWMKEFVSG------- 825
H + +T E E E P V G R QQPVWMK++V G
Sbjct: 755 HNGQQDQEETEEEEETVAETVHQNLPAVGTG-----GVRQRQQPVWMKDYVVGNARVLIT 809
Query: 826 EDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAE 885
+D DE ++ F+ DP+ ++EAA+ + WRKAM+ EI +IE NNTW+L E
Sbjct: 810 QDEEDEVLALFIGP----------GDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVE 859
Query: 886 LPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTI 945
LP+ K IG+KW++KTK NEKGE++K KARLVAKGY Q+ G+DF EVFAPVA+WDTIR I
Sbjct: 860 LPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLI 919
Query: 946 LAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAP 1005
L +AA +GW+VFQLDVKSAFLHG + E VFV+QP+G++V KVYKL KALYGL+QAP
Sbjct: 920 LGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAP 979
Query: 1006 RAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKA 1065
RAWYSRI+ +F K+GF + +HTL+VK+ E ++VS+YVDDLIYTG+ +I FK
Sbjct: 980 RAWYSRIEEFFGKEGFEKCYCEHTLFVKK-ERSDFLVVSVYVDDLIYTGSSMEMIEGFKN 1038
Query: 1066 SMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGT 1125
SM EF M+DLGKM YFLGVE++Q+ GIF+ Q KYA E+++++GM+ N V+NP+VPG
Sbjct: 1039 SMMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQ 1098
Query: 1126 KLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMR 1185
KL K G G VD T++KQ+IGSL YLT +RPDL++SV+LVSRYME P E H+ VKR++R
Sbjct: 1099 KLTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILR 1158
Query: 1186 YLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVV 1245
Y+ GT+D+GIQY R G+ +L+ + DSDYAGDVDDRKSTSGYVFMLG G+IAW+SKKQ +V
Sbjct: 1159 YVQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIV 1218
Query: 1246 SLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSK 1305
+LSTTEAEF++A ACQ +WLR +L +G Q + ++CDNSSTIKLSKNPV+HGRSK
Sbjct: 1219 TLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSK 1278
Query: 1306 HINVRYHFLRDLVRDGRIELVHCST 1330
HI+VRYHFLR+LV++G I L +C+T
Sbjct: 1279 HIHVRYHFLRELVKEGTIRLDYCTT 1303
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 1280 bits (3313), Expect = 0.0
Identities = 654/1257 (52%), Positives = 854/1257 (67%), Gaps = 104/1257 (8%)
Query: 97 MRLKNQGSTKVKRVQLQALRREFEVLGMKEGETVVNYFARTLSIVNKMKIQGESIKETLI 156
M+ K QG+ +V+ QLQ LRR FEVL MK GET+ YF+R + I N M+ GE + ++ +
Sbjct: 1 MKRKYQGNDRVQSAQLQRLRRSFEVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKV 60
Query: 157 VEKILRSLTEKFNYVVCSIEESNDVDTITIDQLQSSLLVQEQRMKGYREEEQALRATSSG 216
VEKILR+L EKF YVVC+IEESN++ +T+D LQSSL+V EQ + + EE+ L+A +
Sbjct: 61 VEKILRTLVEKFTYVVCAIEESNNIKELTVDGLQSSLMVHEQNLSRHDVEERVLKAETQW 120
Query: 217 KSERGRGRTGNRGRGRGRGSF--------NKESVECYKCHKLGHFQYECPTWEESANYAE 268
+ + GRGR G+ RGRGRG + N+++VEC+KCHK+GH++ ECP+WE+ ANY E
Sbjct: 121 RPDGGRGRGGSPSRGRGRGGYQGRGRGYVNRDTVECFKCHKMGHYKAECPSWEKEANYVE 180
Query: 269 LHEDHEELLLMARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCS 328
+ ED LLLMA E G ++K ++WFLDSGCS
Sbjct: 181 MEED---LLLMAHVEQ----------IGDEEK------------------QIWFLDSGCS 209
Query: 329 NHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFIPELKNN 388
NHMCG+REWF LD F V+LGDD M V+GKG ++L++ G IQV ++VYF+P LKNN
Sbjct: 210 NHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVYFVPGLKNN 269
Query: 389 LLSIGQLLERDLSITFKKKWCRIYHK-DKGLIIQSRMSSNRMFAVIATM-----IAPTCF 442
L S+GQL ++ L + C ++HK +K +++ S M+ NRMF V A + T
Sbjct: 270 LFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRC 329
Query: 443 STTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPM--LGELDKPCEECLKGKQHIDPF 500
I + +WHKR+GHL + GL+ LA+K MVKGLP LGE + C+ CLKGKQ +
Sbjct: 330 LQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESI 389
Query: 501 PQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESF 560
P++S W++ + LQL+H+DICGPI P S S KRY + FIDDF RK W YLLSEKS + F
Sbjct: 390 PKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFF 449
Query: 561 KKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKN 620
K+FK E+ESG+KL CLR+DRGGE+NSREF E+C+ GIKRQLTA+YTPQQNGV+ERKN
Sbjct: 450 KEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKN 509
Query: 621 RTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFR 680
R++MNM RCML E VPR+FWPEAV ++VYI NRSP+ A+ +ITPEE WS KPSV R
Sbjct: 510 RSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLR 569
Query: 681 IFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSG 740
IFG +AYA VP +R KLD +SIKC+ G S+ESKAYRLYDP + KI+I+RDV FDE G
Sbjct: 570 IFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERG 629
Query: 741 WDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGV 800
W+W + + E + D E+ H + +T E E E P V
Sbjct: 630 WEWEDKSLEEELVWDNSDHEPAGEEG--PEINHNGQQDQEETEEEEETVAETVHQNLPAV 687
Query: 801 AEEERERRGRRNVQQPVWMKEFVSG-------EDLSDEGVSNFVCADAEYSFVSIHSDPM 853
G R QQPVWMK++V G +D DE ++ F+ D DP+
Sbjct: 688 G-----TGGVRQRQQPVWMKDYVVGNARVLITQDEEDEVLALFIGPD----------DPV 732
Query: 854 TYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHK 913
++EAA+ + WRKAM+ EI +IE NNTW+L ELP+ K IG+KW++KTK NEKGE++K K
Sbjct: 733 CFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFK 792
Query: 914 ARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDET 973
ARLVAKGY Q+ G+DF EVFAPVA+WDTIR IL +AA +GW+VFQLDVKSAFLHG + E
Sbjct: 793 ARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKED 852
Query: 974 VFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVK 1033
VFV+QP+G++V KVYKL KALYGL+QAPRAWYSRI+ +F K+GF + +HTL+VK
Sbjct: 853 VFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVK 912
Query: 1034 QGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEG 1093
+ E ++VS+YVDDLIYTG+ +I FK SM EF M+DLGKM YFLGVE++Q+ G
Sbjct: 913 K-ERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERG 971
Query: 1094 IFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTV 1153
IF+ Q KYA E+++++GM+ N V+NP+VPG KL K G
Sbjct: 972 IFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGA--------------------- 1010
Query: 1154 SRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDY 1213
VSRYME P E H+ VKR++RY+ GT+D+GIQY R G+ +L+ + DSDY
Sbjct: 1011 -----------VSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVGFVDSDY 1059
Query: 1214 AGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFS 1273
AGDVDDRKSTSGYVFMLG G+IAW+SKKQ +V+LSTTEAEF++A ACQ +WLR +L
Sbjct: 1060 AGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEE 1119
Query: 1274 LGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
+G Q + ++CDNSSTIKLSKNPV+HGRSKHI+VRYHFLR+LV++G I L +C+T
Sbjct: 1120 IGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTT 1176
>gb|AAG60117.1| copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 1149 bits (2973), Expect = 0.0
Identities = 609/1369 (44%), Positives = 844/1369 (61%), Gaps = 106/1369 (7%)
Query: 7 FSQPAVPKFDGHYDHWALLMENLLRSKEYWPIVADGV--PALAPNANAEQIKIHEEAKLK 64
F P + K +YD+W+L M+ +L + + W IV G P + + Q +++ +
Sbjct: 8 FQVPVLTK--SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 65
Query: 65 DLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGM 124
D KA ++Q ++ E ++ ++KE W+ +R +G+ +VK+V+LQ LR EFE L M
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQM 125
Query: 125 KEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
KEGE V +YF+R L++ N +K GE + + I+EK+LRSL KF ++V IEE+ D++ +
Sbjct: 126 KEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAM 185
Query: 185 TIDQLQSSLLVQEQRMKGY-------------REEEQALRATSSGKSERGRGRTG----- 226
TI+QL SL E++ K +EE G RGRGR G
Sbjct: 186 TIEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGR 245
Query: 227 --------------NRGRGRGRGS----FNKESVECYKCHKLGHFQYECPT-----WEES 263
N RGRG+G ++K SV+CY C K GH+ EC +EE
Sbjct: 246 GWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEK 305
Query: 264 ANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFL 323
ANY E E++LLMA + K QE W+L
Sbjct: 306 ANYVEEKIQEEDMLLMASYK----------------------KDEQE------ENHKWYL 337
Query: 324 DSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQVFTEVYFI 382
DSG SNHMCG + F LDES V LGD+S M VKGKG++ +++ G Q + VY+I
Sbjct: 338 DSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYI 397
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P +K N+LS+GQLLE+ I K I ++ LI + MS NRMF + C
Sbjct: 398 PSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCL 457
Query: 443 STTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQ 502
K+ES LWH R+GHL + GL++L++K MV+GLP + ++ CE CL GKQ FP+
Sbjct: 458 KMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPK 517
Query: 503 KSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKK 562
+S+ RA++ L+LIH+D+CGPIKPKS + YF+ FIDDF RKTWVY L EKS E FKK
Sbjct: 518 ESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577
Query: 563 FKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRT 622
FK EKESG + +R+DRGGEF S+EF ++CE NGI+RQLT +PQQNGV+ERKNRT
Sbjct: 578 FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637
Query: 623 IMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIF 682
I+ M R ML K++P+E W EAV +VY+ NRSPT +V TP+E WSG+K V+ R+F
Sbjct: 638 ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVF 697
Query: 683 GCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWD 742
G +A+AHVPD +R KLD++S K I++G SK Y+LY+P +KK II+R++VFDE WD
Sbjct: 698 GSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWD 757
Query: 743 WSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGVAE 802
W+S E FF + DE E T + P E + S + E
Sbjct: 758 WNSNEEDYNFFPHFEE----------DEPE-----PTREEPPSEEPTTPPTSPTSSQIEE 802
Query: 803 EERERRGR-RNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKS 861
ER R R++Q+ + E + E ++ F C AE +PM + EA +
Sbjct: 803 SSSERTPRFRSIQELYEVTE-------NQENLTLF-CLFAE-------CEPMDFQEAIEK 847
Query: 862 DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGY 921
WR AMD EI++I++N+TW+L LP G K+IGVKWVYK K N KGE+E++KARLVAKGY
Sbjct: 848 KTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGY 907
Query: 922 AQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQG 981
Q+ GID+ EVFAPVAR +T+R I+++AA W + Q+DVKSAFL+G ++E V+++QPQG
Sbjct: 908 IQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQG 967
Query: 982 YQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAI 1041
Y V+G E KV +L KALYGL+QAPRAW +RID YF+++ F++ +H LY+K + + +
Sbjct: 968 YIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDI-L 1026
Query: 1042 IVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKY 1101
I LYVDDLI+TGN + EFK M +EF+M+D+G MSY+LG+E+ Q GIF+ Q Y
Sbjct: 1027 IACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGY 1086
Query: 1102 AKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYS 1161
AKEVL++F M +SNPV P+ G KL+K+ G VD T +K ++GSL YLT +RPD++Y+
Sbjct: 1087 AKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYA 1146
Query: 1162 VSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRK 1221
V +VSRYME PT H + KR++RY+ GTV+ G+ Y + KL+ Y+DSD+ GDVDDRK
Sbjct: 1147 VGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRK 1206
Query: 1222 STSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKC 1281
STSG+VF +G + W SKKQ +V LST EAE++AA SC C IWLR +L L Q +
Sbjct: 1207 STSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEP 1266
Query: 1282 STIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
+ I+ DN S I L+KNPV H RSKHI+ RYH++R+ V ++L + T
Sbjct: 1267 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1315
>gb|AAD50001.1| Hypothetical protein [Arabidopsis thaliana] gi|25301681|pir||F86246
hypothetical protein [imported] - Arabidopsis thaliana
Length = 1352
Score = 1149 bits (2973), Expect = 0.0
Identities = 607/1371 (44%), Positives = 846/1371 (61%), Gaps = 110/1371 (8%)
Query: 7 FSQPAVPKFDGHYDHWALLMENLLRSKEYWPIVADGV--PALAPNANAEQIKIHEEAKLK 64
F P + K +YD+W+L M+ +L + + W IV G P + + Q +++ +
Sbjct: 8 FQVPVLTK--SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 65
Query: 65 DLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGM 124
D KA ++Q ++ E ++ ++KE W+ +R +G+ +VK+V+LQ LR EFE L M
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQM 125
Query: 125 KEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
KEGE V +YF+R L++ N +K GE + + I+EK+LRSL KF ++V IEE+ D++ +
Sbjct: 126 KEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAM 185
Query: 185 TIDQLQSSLLVQEQRMKGY-------------REEEQALRATSSGKSERGRGRTG----- 226
TI+QL SL E++ K +EE G RGRGR G
Sbjct: 186 TIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGR 245
Query: 227 --------------NRGRGRGRGS----FNKESVECYKCHKLGHFQYECPT-----WEES 263
N RGRG+G ++K SV+CY C K GH+ EC +EE
Sbjct: 246 GWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEK 305
Query: 264 ANYAELHEDHEELLLMA--RTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVW 321
ANY E E++LLMA + + K +H W
Sbjct: 306 ANYVEEKIQEEDMLLMASYKKDEQKENHK------------------------------W 335
Query: 322 FLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQVFTEVY 380
+LDSG SNHMCG + F LDES V LGD+S M VKGKG++ +++ G Q + VY
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 381 FIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPT 440
+IP +K N+LS+GQLLE+ I K I ++ LI + MS NRMF +
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ 455
Query: 441 CFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPF 500
C K+ES LWH R+GHL + GL++L++K MV+GLP + ++ CE CL GKQ F
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 501 PQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESF 560
P++S+ RA++ L+LIH+D+CGPIKPKS + YF+ FIDDF RKTWVY L EKS E F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 561 KKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKN 620
KKFK EKESG + +R+DRGGEF S+EF ++CE NGI+RQLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKN 635
Query: 621 RTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFR 680
RTI+ M R ML K++P+E W EAV +VY+ NRSPT +V TP+E WSG+KP V+ R
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Query: 681 IFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSG 740
+FG +A+AHVPD +R KLD++S K I++G SK Y+LY+P +KK II+R++VFDE
Sbjct: 696 VFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGE 755
Query: 741 WDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGV 800
WDW+S E FF + DE E T + P E + S +
Sbjct: 756 WDWNSNEEDYNFFPHFEE----------DEPE-----PTREEPPSEEPTTPPTSPTSSQI 800
Query: 801 AEEERERRGR-RNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAA 859
E ER R R++Q+ + E + E ++ F C AE +PM + +A
Sbjct: 801 EESSSERTPRFRSIQELYEVTE-------NQENLTLF-CLFAE-------CEPMDFQKAI 845
Query: 860 KSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAK 919
+ WR AMD EI++I++N+TW+L LP G K+IGVKWVYK K N KGE+E++KARLVAK
Sbjct: 846 EKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAK 905
Query: 920 GYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQP 979
GY+Q+ GID+ EVFAPVAR +T+R I+++AA W + Q+DVKSAFL+G ++E V+++QP
Sbjct: 906 GYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQP 965
Query: 980 QGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGL 1039
QGY V+G E KV +L K LYGL+QAPRAW +RID YF+++ F++ +H LY+K + +
Sbjct: 966 QGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDI 1025
Query: 1040 AIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQS 1099
+I LYVDDLI+TGN + EFK M +EF+M+D+G MSY+LG+E+ Q GIF+ Q
Sbjct: 1026 -LIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQE 1084
Query: 1100 KYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLM 1159
YAKEVL++F M +SNPV P+ G KL+K+ G VD T +K ++GSL YLT +RPD++
Sbjct: 1085 GYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDIL 1144
Query: 1160 YSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDD 1219
Y+V +VSRYME PT H + KR++RY+ GTV+ G+ Y + KL+ Y+DSD+ GDVDD
Sbjct: 1145 YAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDD 1204
Query: 1220 RKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQG 1279
RKSTSG+VF +G + W SKKQ +V+LST EAE++AA SC C IWLR +L L Q
Sbjct: 1205 RKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1264
Query: 1280 KCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
+ + I+ DN S I L+KNPV H RSKHI+ RYH++R+ V ++L + T
Sbjct: 1265 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1315
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] gi|11278364|pir||T47925
copia-type polyprotein - Arabidopsis thaliana
Length = 1352
Score = 1146 bits (2964), Expect = 0.0
Identities = 605/1371 (44%), Positives = 846/1371 (61%), Gaps = 110/1371 (8%)
Query: 7 FSQPAVPKFDGHYDHWALLMENLLRSKEYWPIVADGV--PALAPNANAEQIKIHEEAKLK 64
F P + K +YD+W+L M+ +L + + W IV G P + + Q +++ +
Sbjct: 8 FQVPVLTK--SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 65
Query: 65 DLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGM 124
D KA ++Q ++ E ++ ++KE W+ +R +G+ +VK+V+LQ LR EFE L M
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQM 125
Query: 125 KEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
KEGE V +YF+R L++ N +K GE + + I+EK+LRSL KF ++V IEE+ D++ +
Sbjct: 126 KEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAM 185
Query: 185 TIDQLQSSLLVQEQRMKGY-------------REEEQALRATSSGKSERGRGRTG----- 226
TI+QL SL E++ K +EE G RGRGR G
Sbjct: 186 TIEQLLGSLQAYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGR 245
Query: 227 --------------NRGRGRGRGS----FNKESVECYKCHKLGHFQYECPT-----WEES 263
N RGRG+G ++K SV+CY C K GH+ EC +EE
Sbjct: 246 GWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEK 305
Query: 264 ANYAELHEDHEELLLMA--RTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVW 321
A+Y E E++LLMA + + K +H W
Sbjct: 306 AHYVEEKIQEEDMLLMASYKKDEQKENHK------------------------------W 335
Query: 322 FLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQVFTEVY 380
+LDSG SNHMCG + F LDES V LGD+S M VKGKG++ +++ G Q + VY
Sbjct: 336 YLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVY 395
Query: 381 FIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPT 440
+IP +K N+LS+GQLLE+ I K I ++ LI + MS NRMF +
Sbjct: 396 YIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQ 455
Query: 441 CFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPF 500
C K+ES LWH R+GHL + GL++L++K MV+GLP + ++ CE CL GKQ F
Sbjct: 456 CLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSF 515
Query: 501 PQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESF 560
P++S+ RA++ L+LIH+D+CGPIKPKS + YF+ FIDDF RKTWVY L EKS E F
Sbjct: 516 PKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIF 575
Query: 561 KKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKN 620
KKFK EKESG + +R+DRGGEF S+EF ++CE NGI+RQLT +PQQNGV ERKN
Sbjct: 576 KKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKN 635
Query: 621 RTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFR 680
RTI+ M R ML K++P+E W EAV +VY+ NRSPT +V TP+E WSG+KP V+ R
Sbjct: 636 RTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Query: 681 IFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSG 740
+FG +A+AHVPD +R KLD++S K I++G SK Y+LY+P +KK II+R++VFDE
Sbjct: 696 VFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGE 755
Query: 741 WDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGV 800
WDW+S E FF + DE E T + P E + S +
Sbjct: 756 WDWNSNEEDYNFFPHFEE----------DEPE-----PTREEPPSEEPTTPPTSPTSSQI 800
Query: 801 AEEERERRGR-RNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAA 859
E ER R R++Q+ + E + E ++ F C AE +PM + +A
Sbjct: 801 EESSSERTPRFRSIQELYEVTE-------NQENLTLF-CLFAE-------CEPMDFQKAI 845
Query: 860 KSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAK 919
+ WR AMD EI++I++N+TW+L LP G K+IGVKWVYK K N KGE+E++KARLVAK
Sbjct: 846 EKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAK 905
Query: 920 GYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQP 979
GY+Q+ GID+ EVFAPVAR +T+R I+++AA W + Q+DVKSAFL+G ++E V+++QP
Sbjct: 906 GYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQP 965
Query: 980 QGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGL 1039
QGY V+G E KV +L K LYGL+QAPRAW +RID YF+++ F++ +H LY+K + +
Sbjct: 966 QGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDI 1025
Query: 1040 AIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQS 1099
+I LYVDDLI+TGN + EFK M +EF+M+D+G MSY+LG+E+ Q GIF+ Q
Sbjct: 1026 -LIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQE 1084
Query: 1100 KYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLM 1159
YAKEVL++F + +SNPV P+ G KL+K+ G VD T +K ++GSL YLT +RPD++
Sbjct: 1085 GYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDIL 1144
Query: 1160 YSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDD 1219
Y+V +VSRYME PT H + KR++RY+ GTV+ G+ Y + KL+ Y+DSD+ GDVDD
Sbjct: 1145 YAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDD 1204
Query: 1220 RKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQG 1279
RKSTSG+VF +G + W SKKQ +V+LST EAE++AA SC C IWLR +L L Q
Sbjct: 1205 RKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE 1264
Query: 1280 KCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
+ + I+ DN S I L+KNPV H RSKHI+ RYH++R+ V ++L + T
Sbjct: 1265 EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1315
>gb|AAT38758.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1333
Score = 1097 bits (2838), Expect = 0.0
Identities = 597/1347 (44%), Positives = 846/1347 (62%), Gaps = 83/1347 (6%)
Query: 8 SQPAVPKFDG-HYDHWALLMENLLRSKEYWPIVADGVPALAPNANAEQIKIHEEAKLKDL 66
SQP +P F G +Y W+L M+ L +S+E W IV G+P NA Q++ H + +D
Sbjct: 10 SQPLIPIFRGENYQFWSLKMKTLFKSQELWDIVETGIP----EGNANQMREHRK---RDS 62
Query: 67 KAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKE 126
KA + Q+++ I I +ETSK+ W+ ++ + G KV V+LQ LRR+FE L M E
Sbjct: 63 KALFTIQQALDDEIFPRISAVETSKQAWEILKQEYFGDDKVITVKLQTLRRDFETLFMNE 122
Query: 127 GETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITI 186
E+V Y +RT +IVN+M+ GE I ++V K+LRSLT KF +VV +IEES D+ T +
Sbjct: 123 NESVQGYLSRTSAIVNRMRSYGEKIDNQIVVSKVLRSLTTKFEHVVTAIEESKDLSTYSF 182
Query: 187 DQLQSSLLVQEQRMKGYRE--EEQALRATSS----GKSE----RGRGRTGNRGRGRGR-- 234
D+L SSLL E R+ RE +E+A + GK+E RG GR RGRGRG
Sbjct: 183 DELMSSLLAHEDRLNRSREKVQEKAFQVKGEFSYKGKAENSAGRGHGRGNFRGRGRGGSG 242
Query: 235 ------GSFN--KESVECYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMARTETGK 286
G F K +++C C K GH + +C T ++ K
Sbjct: 243 RGRNQVGEFRQYKSNIQCRYCKKFGHKEVDCWTKQKDEQ--------------------K 282
Query: 287 TSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFT 346
++ T Q V+++S L ++Q ++ VWF+DSGCSNHM S+ F +LDES
Sbjct: 283 DANFT---QNVEEESKLFMASSQ---ITESANAVWFIDSGCSNHMSSSKSLFRDLDESQK 336
Query: 347 TTVKLGDDSIMTVKGKGDVKLQ-IGGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFK 405
+ V+LGDD + ++GKG V+++ + G ++ +V ++P L +NLLS+GQL+ S+ F
Sbjct: 337 SEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQLMTSGYSVVFY 396
Query: 406 KKWCRIYHKDKG-LIIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSG 464
C I K+ G I + M+ N+MF + + + + K+E+ LWH RYGHL +
Sbjct: 397 DNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYGHLNVNW 456
Query: 465 LKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIK 524
LK+L QK MV GLP + ELD CE C+ GKQ FP +WRA L+L+H+D+CGP+K
Sbjct: 457 LKLLVQKDMVIGLPNIKELDL-CEGCIYGKQTRKSFPVGKSWRATTCLELVHADLCGPMK 515
Query: 525 PKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGG 584
+S RYF+ F DD+ R +WVY L KS E+FKKFK E +SG K+ LRTDRGG
Sbjct: 516 MESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGG 575
Query: 585 EFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEA 644
EF S +F FCE NGI+R+LTA YTP+QNGV+ERKNRT++ M R L K +P FW EA
Sbjct: 576 EFLSNDFNLFCEENGIRRELTAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEA 635
Query: 645 VNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIK 704
V VY N SPT V N TP E W+GKKP V+ RIFGC+AYA V + KLD +S K
Sbjct: 636 VATVVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIFGCIAYALV--NFHSKLDEKSTK 693
Query: 705 CIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVST 764
CI++G S +SKAYRLY+P+S K+II+R+VVF+E W+++SG N +S
Sbjct: 694 CIFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWNFNSG-------------NMMSN 740
Query: 765 VPILD-EVEHQVHSETNDTSPELEDNGEASVSASPGVAEEERERRGRRNVQQPVWMKEFV 823
+ +L + E V + S + + + ++ S VA +E +P+ ++
Sbjct: 741 IQLLPTDEESAVDFGNSPNSSPVSSSVSSPIAPSTTVAPDESS-------VEPIPLRRST 793
Query: 824 SGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQL 883
E + SN V +++ + SDP+ Y+EA + W+ AM EIQAIERN+TW+L
Sbjct: 794 R-EKKPNPKYSNTVNTSCQFALLV--SDPICYEEAVEQSEWKNAMIEEIQAIERNSTWEL 850
Query: 884 AELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIR 943
+ P+G IG+KWV++TK N G I+KHKARLVAKGY+QQQG+DF E F+PVAR++T+R
Sbjct: 851 VDAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETVR 910
Query: 944 TILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQ 1003
+LA+AA V+Q DVKSAFL+G ++E V+V QPQG+ + G E KVYKL KALYGL+Q
Sbjct: 911 VVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQ 970
Query: 1004 APRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEF 1063
APRAWYS+IDS+FQ GF RSD++ TLY+K+ ++V LYVDD+IY G+ + L+++F
Sbjct: 971 APRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDF 1030
Query: 1064 KASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVP 1123
K++M R F+MSDLG + YFLG+E++Q+ +GIF+ Q KYA+++L++F M N P+
Sbjct: 1031 KSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTPMNI 1090
Query: 1124 GTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRV 1183
KL + + + ++ ++G L YLT +RPD+ +SVS+VSR+++ PT+ H KRV
Sbjct: 1091 NEKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAAKRV 1150
Query: 1184 MRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQA 1243
+RY+ GT D GI Y ++ + +L+ +TDSDYAG +DDRKSTSG F GSG + WSSKKQ
Sbjct: 1151 LRYVAGTTDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKSTSGSCFSFGSGVVTWSSKKQE 1210
Query: 1244 VVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGR 1303
V+LST+EAE+ AA A Q +WLR++L Q + + I+ D+ S I ++KNP HGR
Sbjct: 1211 TVALSTSEAEYTAASLAARQALWLRKLLEDFSYEQKESTEIFSDSKSAIAMAKNPSFHGR 1270
Query: 1304 SKHINVRYHFLRDLVRDGRIELVHCST 1330
+KHI+V+YHF+R LV DGRI L CST
Sbjct: 1271 TKHIDVQYHFIRTLVADGRIVLKFCST 1297
>gb|AAF16534.1| T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 1076 bits (2782), Expect = 0.0
Identities = 580/1334 (43%), Positives = 817/1334 (60%), Gaps = 97/1334 (7%)
Query: 7 FSQPAVPKFDGHYDHWALLMENLLRSKEYWPIVADGV--PALAPNANAEQIKIHEEAKLK 64
F P + K +YD+W+L M+ +L + + W IV G P + + Q +++ +
Sbjct: 8 FQVPVLTK--SNYDNWSLQMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 65
Query: 65 DLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGM 124
D KA ++Q ++ E ++ ++KE W+ +R +G +VK+V+LQ LR EFE L M
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGVDQVKKVRLQTLRGEFEALQM 125
Query: 125 KEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
KEGE V +YF+R L++ N +K GE + + I+EK+LRSL KF ++V IEE+ D++ +
Sbjct: 126 KEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAM 185
Query: 185 TIDQLQSSLLVQEQRMKGYRE-EEQAL--RATSSGKSERGRGRTGNRGRGRGRGSFNKES 241
TI+QL SL E++ K + EQ L R T + + R G RGRGRG +
Sbjct: 186 TIEQLLGSLQAYEEKKKKKEDIVEQVLNMRITKEENGQSYQRRGGGEVRGRGRGGYGNG- 244
Query: 242 VECYKCHKLGHFQYECPT---WEESANYAELHEDHEELLLMARTETGKTSHTTLKIQGVD 298
++ H+ + P+ +EE ANY E E++LLMA +
Sbjct: 245 -RGWRPHE-DNTNQRAPSNKKFEEKANYVEEKIQEEDMLLMASYK--------------- 287
Query: 299 KKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMT 358
K QE W+LDSG SNHMCG + F LDES V LGD+S M
Sbjct: 288 -------KDEQE------ENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKME 334
Query: 359 VKGKGDVKLQI-GGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKG 417
VKGKG++ +++ G Q + VY+IP +K N+LS+GQLLE+ I K I ++
Sbjct: 335 VKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESN 394
Query: 418 LIIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKGL 477
LI + MS NRMF + C K+ES LWH R+GHL + GL++L++K MV+GL
Sbjct: 395 LITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGL 454
Query: 478 PMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITF 537
P + ++ CE CL GKQ FP++S+ RA++ L+LIH+D+CGPIKPKS
Sbjct: 455 PCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKS---------- 504
Query: 538 IDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCEL 597
EKS + FKKFK EKESG + +R+DRGGEF S+EF ++CE
Sbjct: 505 -------------LEKSEVFKIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCED 551
Query: 598 NGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPT 657
NGI+RQLT +PQQNGV+ERKNRTI+ M R ML K++P+E W EAV +VY+ NRSPT
Sbjct: 552 NGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPT 611
Query: 658 IAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAY 717
+V TP+E WSG+KP V+ R+FG +A+AHVPD +R KLD++S K I++G SK Y
Sbjct: 612 KSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGY 671
Query: 718 RLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHS 777
+LY+P +KK II+R++VFDE WDW+S E FF + DE E
Sbjct: 672 KLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEE----------DEPE----- 716
Query: 778 ETNDTSPELEDNGEASVSASPGVAEEERERRGR-RNVQQPVWMKEFVSGEDLSDEGVSNF 836
T + P E + S + E ER R R++Q+ + E + E ++ F
Sbjct: 717 PTREEPPSEEPTTRPTSLTSSQIEESSSERTPRFRSIQELYEVTE-------NQENLTLF 769
Query: 837 VCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVK 896
C AE +PM + EA + WR AMD EI++I++N+TW+L LP G K+IGVK
Sbjct: 770 -CLFAE-------CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVK 821
Query: 897 WVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNV 956
WVYK K N KGE+E++KARLVAKGY+Q+ GID+ EVFAPVAR +T+R I+++AA W +
Sbjct: 822 WVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKI 881
Query: 957 FQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYF 1016
Q+D K AFL+G +E V+++QPQGY V+G E KV +L KALYGL+QAPRAW +RID YF
Sbjct: 882 HQMDFKLAFLNGDFEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYF 941
Query: 1017 QKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDL 1076
+++ F++ +H LY+K + + +I LYVDDLI+TGN + EFK M +EF+M+D+
Sbjct: 942 KEKDFIKCPYEHALYIKIQKEDI-LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDI 1000
Query: 1077 GKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEV 1136
G MSY+LG+E+ Q IF+ Q YAKEVL++F M +SNPV P+ G KL+K+ G V
Sbjct: 1001 GLMSYYLGIEVKQEDNRIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGV 1060
Query: 1137 DATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQ 1196
D T +K ++GSL YLT +RPD++Y+V +VSRYME PT H + KR++RY+ GTV+ G+
Sbjct: 1061 DPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLH 1120
Query: 1197 YRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIA 1256
Y + KL+ Y+DSD+ DVDDRKSTSG+VF +G + W SKKQ +V+LST EAE++A
Sbjct: 1121 YSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVA 1180
Query: 1257 AVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRD 1316
A SC C IWLR +L L Q + + I+ DN S I L+KNPV H RSKHI+ RYH++R+
Sbjct: 1181 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1240
Query: 1317 LVRDGRIELVHCST 1330
V ++L + T
Sbjct: 1241 CVSKKDVQLEYVKT 1254
>gb|AAP46257.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50919599|ref|XP_470160.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1335
Score = 1033 bits (2672), Expect = 0.0
Identities = 575/1368 (42%), Positives = 798/1368 (58%), Gaps = 106/1368 (7%)
Query: 8 SQPAVPKFDG-HYDHWALLMENLLRSKEYWPIVADGVP--ALAPNANAEQIKIHEEAKLK 64
+Q VP F G +YD W++ M LL S+ W IV +G + AEQ K E ++
Sbjct: 2 AQSMVPVFAGENYDIWSIKMRTLLLSQGLWDIVENGYQEYSAGETLTAEQKKSLAEDRMS 61
Query: 65 DLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGM 124
D KA + Q + S+ I+ + SKE WD ++ + QGS KV V+LQ LRR+F+ L M
Sbjct: 62 DAKALFLIQQGVAESLFPRIIGAKKSKEAWDKLKEEFQGSQKVLAVKLQTLRRQFQNLLM 121
Query: 125 KEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
KE E V +YF+R + IVN+M++ GE I + +VEKIL SL EK+ Y+V + EES D+
Sbjct: 122 KESEKVKDYFSRVIEIVNQMRLYGEDINDQKVVEKILISLPEKYEYIVAATEESKDLSKD 181
Query: 185 TIDQLQSSLLVQE--------QRMKGYREEEQALRAT--SSGKSERGRG----------- 223
+++ + L +E Q +R + R +G R RG
Sbjct: 182 SLESHEERKLQREGSSIENAFQSKLSFRPQNSRFRGNFQKNGFPMRDRGYFQKNGFSRQK 241
Query: 224 RTGNRGRGRGRGSFNK----------------ESVECYKCHKLGHFQYECPTWE-ESANY 266
G R +G S N + + C KC + GH C T E AN+
Sbjct: 242 EDGQERREKGTSSSNLWCDICQKSSHTTDMCWKKMTCNKCKRKGHIAKYCRTREINRANF 301
Query: 267 AELHEDHEELLLMARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSG 326
++ E EE++ T AQE VW +DSG
Sbjct: 302 SQEKEKSEEMVFSCHT-------------------------AQE-----EKDDVWVIDSG 331
Query: 327 CSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFIPELK 386
C+NHM F +D S+ + +G+ SI +GKG V +Q + +V +P+LK
Sbjct: 332 CTNHMAADPNLFREMDSSYHAKIHMGNGSIAQSEGKGTVAVQTADGPKFIKDVLLVPDLK 391
Query: 387 NNLLSIGQLLERDLSITFKKKWCRIY-HKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTT 445
NLLSIGQLLE ++ F+ C+I K+ L+ + M NR F + +
Sbjct: 392 QNLLSIGQLLEHGYAVYFEDFSCKILDRKNNRLVAKINMEKNRNFLLRMNHTTQMALRSE 451
Query: 446 IKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKST 505
+ D S+LWHKR GHL Y LK+L K MV+GLP + PCE C+ GKQ FP
Sbjct: 452 V-DISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGA 510
Query: 506 WRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKL 565
WRA L+L+H+DI G + S YFITFIDD+ R WVY L EKS ALE FKKFK
Sbjct: 511 WRASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKA 570
Query: 566 LAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMN 625
+ E +S K+ LR+D+G E+ S+EF ++CE GI+RQLTA Y+ QQNGV+ERKNRTI +
Sbjct: 571 MVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTIND 630
Query: 626 MVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCV 685
M ML +K +P+ FW EAVN +VYI NRSPT AV N TP E W GKKP + R+FGC+
Sbjct: 631 MANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCI 690
Query: 686 AYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSS 745
YA VP +R K DN+S +CI++G ++ K YRLY+ KKIII+RD +FDES+ W+W S
Sbjct: 691 CYAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDESATWNWKS 750
Query: 746 GAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELE-DNGEASVSASPGVAEE- 803
++ T ++ H+V T P + AS +SP E+
Sbjct: 751 PEASS---TPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQI 807
Query: 804 ERERRGRRNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDH 863
R V+ V + E S + S++ + C YS V +P ++ EA K D+
Sbjct: 808 STPESAPRRVRSMVELLESTSQQRGSEQ---HEFC---NYSVV----EPQSFQEAEKHDN 857
Query: 864 WRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQ 923
W KAM+ EI IE+NNTW+L + P+ + IGVKWVYKTKLN G ++K+KARLVAKG+ Q
Sbjct: 858 WIKAMEDEIHMIEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQ 917
Query: 924 QQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQ 983
+ GID+ E +APVAR +TIRTI+A+AA + W ++QLDVKSAFL+G +DE ++V+QP+G+
Sbjct: 918 KPGIDYYETYAPVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFS 977
Query: 984 VRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIV 1043
V+G E KV++L KALYGL+QAPRAWYS+ID YF ++GF +S S+ TLYV + + +IV
Sbjct: 978 VQGGENKVFRLKKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPTLYVNKTGTDI-LIV 1036
Query: 1044 SLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAK 1103
SLYVDDLIYTGN E ++ +FK M ++MSDLG + YFLG+E+ Q+ EGIF+ Q KYA+
Sbjct: 1037 SLYVDDLIYTGNSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAE 1096
Query: 1104 EVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVS 1163
+L++F M N V P++P K R + D T Y+ ++GSL+YLT +RPD+M++ S
Sbjct: 1097 NILKKFKMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAAS 1156
Query: 1164 LVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKST 1223
L+SRYM P++L+ KRV+RY+ GT D GI Y+ KLI YTDSD+AG +DD KST
Sbjct: 1157 LLSRYMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKST 1216
Query: 1224 SGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCST 1283
SGY F LGS EAE++AA Q +WLRRI+ LG+ Q + +T
Sbjct: 1217 SGYAFSLGS-----------------AEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTT 1259
Query: 1284 IYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
IYCD+ S I +S+NPV H R+KHI ++YH++R+ V ++L C T+
Sbjct: 1260 IYCDSKSAIAISENPVSHDRTKHIAIKYHYIREAVDRQEVKLEFCRTD 1307
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
Length = 1272
Score = 1016 bits (2626), Expect = 0.0
Identities = 563/1369 (41%), Positives = 786/1369 (57%), Gaps = 186/1369 (13%)
Query: 7 FSQPAVPKFDGHYDHWALLMENLLRSKEYWPIVADGV--PALAPNANAEQIKIHEEAKLK 64
F P + K +YD+W+L M+ +L + + W IV G P + + Q +++ +
Sbjct: 8 FQVPVLTK--SNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKR 65
Query: 65 DLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGM 124
D KA ++Q ++ E ++ ++KE W+ +R +G+ +VK+V+LQ LR EFE L M
Sbjct: 66 DKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQM 125
Query: 125 KEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTI 184
KEGE V +YF+R L++ N +K GE + + I+EK+LRSL KF ++V IEE+ D++ +
Sbjct: 126 KEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAM 185
Query: 185 TIDQLQSSLLVQEQRMKGY-------------REEEQALRATSSGKSERGRGRTG----- 226
TI+QL SL E++ K +EE G RGRGR G
Sbjct: 186 TIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGR 245
Query: 227 --------------NRGRGRGRGS----FNKESVECYKCHKLGHFQYECPT-----WEES 263
N RGRG+G ++K SV+CY C K GH+ EC ++E
Sbjct: 246 GWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFKEK 305
Query: 264 ANYAELHEDHEELLLMARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFL 323
ANY E E++LLMA + K QE W+L
Sbjct: 306 ANYVEEKIQEEDMLLMASYK----------------------KDEQE------ENHKWYL 337
Query: 324 DSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQVFTEVYFI 382
DSG SNHMCG + F LDES V LGD+S M VKGKG++ +++ G Q + VY+I
Sbjct: 338 DSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYI 397
Query: 383 PELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCF 442
P +K N+LS+GQLLE+ I K I K+ LI + MS NRMF + C
Sbjct: 398 PSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCL 457
Query: 443 STTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQ 502
K+ES LWH R+GHL + GL++L++K MV+GLP + ++ CE CL G Q FP+
Sbjct: 458 KMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPK 517
Query: 503 KSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKK 562
+S+ RA++ L+LIH+D+CGPIKPKS + YF+ FIDDF RKTWVY L EKS E FKK
Sbjct: 518 ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577
Query: 563 FKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRT 622
FK EKESG + +R+D GGEF S+EF ++CE NGI+RQLT +PQQNGV+ERKNRT
Sbjct: 578 FKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637
Query: 623 IMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIF 682
I+ M R ML K++P+E W EAV +VY+ NRSPT +V TP+E WSG+KP V+ R+F
Sbjct: 638 ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVF 697
Query: 683 GCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWD 742
G +A+AHVPD +R KLD++S K I++G SK Y+LY+P +KK II+R++VFDE WD
Sbjct: 698 GSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWD 757
Query: 743 WSSGAEQMEFFDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGVAE 802
W+S E FF E T + P E + S + E
Sbjct: 758 WNSNEEDYNFFPHF---------------EEDKPEPTREEPPSEEPTTPPTSPTSSQIEE 802
Query: 803 EERERRGR-RNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKS 861
ER R R++Q+ + E + E ++ F C AE +PM + EA +
Sbjct: 803 SSSERTPRFRSIQELYEVTE-------NQENLTLF-CLFAE-------CEPMDFQEAIEK 847
Query: 862 DHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGY 921
WR AMD EI++I++N+TW+L LP G K+IGVKWVYK K N KGE+E++KARLVAKGY
Sbjct: 848 KTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGY 907
Query: 922 AQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQG 981
+Q+ GID+ E+FAPVAR +T+R I+++AA W + Q+DVKSAFL+G ++E V+++QPQG
Sbjct: 908 SQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQG 967
Query: 982 YQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAI 1041
Y V+G E KV +L K LYGL+QAPRAW +RID YF+++ F++ +H LY+K + + +
Sbjct: 968 YIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDI-L 1026
Query: 1042 IVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKY 1101
I LYVDDLI+TGN + EFK M +EF+M+D+G MSY+LG+E+ Q GIF+ Q Y
Sbjct: 1027 IACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGY 1086
Query: 1102 AKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYS 1161
AKEVL++F M +SNP ++GSL YLT +RPD++Y+
Sbjct: 1087 AKEVLKKFKMDDSNP--------------------------SLVGSLRYLTCTRPDILYA 1120
Query: 1162 VSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRK 1221
V +VSRYME PT H + KR++RY+ GTV+ G+ Y T SDY
Sbjct: 1121 VGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYS----------TTSDY-------- 1162
Query: 1222 STSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKC 1281
+ VV C IWLR +L L Q +
Sbjct: 1163 --------------------KLVV----------------CHAIWLRNLLKELSLPQEEP 1186
Query: 1282 STIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
+ I+ DN S I L+KNPV H RSKHI+ RYH++R+ V ++L + T
Sbjct: 1187 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1235
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 947 bits (2447), Expect = 0.0
Identities = 511/1362 (37%), Positives = 786/1362 (57%), Gaps = 87/1362 (6%)
Query: 9 QPAVPKFDGH-YDHWALLMENLLRSKEYWPIVADGVPA-LAPNANAEQIKIHEEAKLKDL 66
Q +P F+G Y W + M +L++++ W ++ +GV + +P + + ++ +KD+
Sbjct: 6 QQVIPIFNGESYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDM 65
Query: 67 KAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKE 126
A L ++ SI I ++ E W+++ ++ QGS++VK + LQ LRRE+E L M+E
Sbjct: 66 MALQILQSAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEE 125
Query: 127 GETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITI 186
GET+ ++ + +++ N++++ GE + +V+KIL S+ ++F+ +V +E++ D+ T+++
Sbjct: 126 GETINDFTTKLINLSNQLRVHGEEKSDYQVVQKILISVPQQFDSIVGVLEQTKDLSTLSV 185
Query: 187 DQLQSSLLVQEQRMKGYREEE------QALRATSSGKSERGRGRTGNRGRGRG---RGSF 237
+L +L E+R+ RE+ + S G++++ + R G G R +
Sbjct: 186 TELIGTLKAHERRLN-LREDRINEGAFNGEKLGSRGENKQNKIRHGKTNMWCGVCKRNNH 244
Query: 238 NK--------ESVE---------CYKCHKLGHFQYECPTWEESANYAELHEDHEELLLMA 280
N+ ES+ CY C K GH +C + + + E +E
Sbjct: 245 NEVDCFRKKSESISQRGGSYERRCYVCDKQGHIARDCKLRKGERAHLSIEESEDE----- 299
Query: 281 RTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHN 340
K + V++K + T E + W +DSGC+NHM F
Sbjct: 300 -----KEDECHMLFSAVEEKEI---STIGE--------ETWLVDSGCTNHMSKDVRHFIA 343
Query: 341 LDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIGQLLERDL 400
LD S +++G+ + +GKGD+++ V +V ++PEL NLLS+ Q++
Sbjct: 344 LDRSKKIIIRIGNGGKVVSEGKGDIRVSTNKGDHVIKDVLYVPELARNLLSVSQMISNGY 403
Query: 401 SITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTTIKDE-SELWHKRYGH 459
+ F+ C I I+ +M + T + K+E ++LWHKR+GH
Sbjct: 404 RVIFEDNKCVIQDLKGRKILDIKMKDRSFPIIWKKSREETYMAFEEKEEQTDLWHKRFGH 463
Query: 460 LGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDI 519
+ Y ++ + +V+ LP + C C GKQ FP+KS + L+LIHSD+
Sbjct: 464 VNYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDV 523
Query: 520 CGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLR 579
CGP++ +S + RYF+TFIDDF R TWVY L KS + FK FK E +S ++ LR
Sbjct: 524 CGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLR 583
Query: 580 TDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPRE 639
TD GGEF SREF + C+ +GI ++T Y+PQQNGV+ER+NRT++ M R M+ EKK+ +
Sbjct: 584 TDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNK 643
Query: 640 FWPEAVNWSVYIQNRSPTIAV-KNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKL 698
FW EA+ S Y+QNR P+ ++ K +TP E WSGKKPSV+ ++FGCV Y H+PD +RRKL
Sbjct: 644 FWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKL 703
Query: 699 DNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEFFDEMVD 758
D ++ + I++G S ESK YR++ +KI +++DV FDE W E+
Sbjct: 704 DTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEKKTWSHDEKGERKAILS---- 759
Query: 759 TNEVSTVPILDEVEHQVHSETNDTSPELEDNGEA---------SVSASPGVAEEERERRG 809
L ++ Q ND + ++ A V S EE RG
Sbjct: 760 ---------LVKINSQEQGGGNDLNAHIDQVSNAFNQLHISSRGVQNSHEEGEESVGPRG 810
Query: 810 RRNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMD 869
R++ + V GE L E +C + + +P +EA K + W +AM
Sbjct: 811 FRSINNLMDQTNEVEGEALIHE-----MC-------LMMAEEPQALEEAMKDEKWIEAMR 858
Query: 870 LEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDF 929
E++ IE+N TW++ PK I VKW+++ K + GE K KARLVA+G+ Q+ G+D+
Sbjct: 859 EELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDY 918
Query: 930 TEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAER 989
E FAPV+R+DTIRTI+AIAA +GW +FQ+DVKSAFL+G ++E V+++QP G+ E
Sbjct: 919 LETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEG 978
Query: 990 KVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDD 1049
KV KLHKALYGL+QAPRAWY RID YF K GF RS +D YVK+ + ++VSLYVDD
Sbjct: 979 KVLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDAAFYVKKTSKEI-LVVSLYVDD 1037
Query: 1050 LIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERF 1109
+I TG+ I FK M+ EF+M+DLG++SYFLG+E+ Q+ EGIF+ Q YAK++L++F
Sbjct: 1038 IIVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKF 1097
Query: 1110 GMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYM 1169
GM+ V P+ P K+ + D T Y+ MIG ++YL SRPD+MY+ S +SRYM
Sbjct: 1098 GMQECKSVSTPLTPHGKIEEVLSEKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYM 1157
Query: 1170 EKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFM 1229
P + H+Q KRV+RY+ GT+ GI ++R +L+ ++DSD+AG V+D+KSTSGYVF
Sbjct: 1158 RSPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEKPELVGFSDSDWAGSVEDKKSTSGYVFT 1217
Query: 1230 LGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNS 1289
+GSG+ W+S KQ V+ ST EAE+IA S A Q IWL+R++ +G K I+CDN
Sbjct: 1218 IGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNK 1277
Query: 1290 STIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
S I + KNPV H R+KHI+++YHF+R+ ++G+I+L +C E
Sbjct: 1278 SAIAIGKNPVQHRRTKHIDIKYHFVREAQQNGKIKLEYCPGE 1319
>ref|XP_474043.1| OSJNBb0034I13.10 [Oryza sativa (japonica cultivar-group)]
gi|21741247|emb|CAD41731.1| OSJNBb0034I13.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1425
Score = 928 bits (2399), Expect = 0.0
Identities = 528/1378 (38%), Positives = 783/1378 (56%), Gaps = 107/1378 (7%)
Query: 18 HYDHWALLMENLLRSKEYWPIVADGVPALAPNANAEQIKIHEEAKLKDLKAKNYLFQSIE 77
+Y WALLM L+++ W + G +D A + + Q++
Sbjct: 60 NYPDWALLMRVNLQAQGLWTAIDPGYAEFR----------------EDRAALSAILQAVP 103
Query: 78 RSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGETVVNYFART 137
R +L + +T+K WD+++ G +V+ + Q RR+FE + KE ET + R
Sbjct: 104 REMLRGLAKHDTAKAAWDAIKTMRVGVDRVREAKEQGFRRQFESMRFKERETPEEFAMRL 163
Query: 138 LSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQLQSSLLV-- 195
++V ++ G +++ + +K+LR + +K+ V S+E+ DV T+ +++L L
Sbjct: 164 TAVVADIRDMGGVMEDEHVNKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLSTVD 223
Query: 196 ----QEQRMKG---YREEEQALRATSSGKSERGRGRTGNRGRG-------RGR------- 234
E+ G Y EEQ +A + + G G +GN+GRG RG+
Sbjct: 224 SYSDDEEGSNGGKLYLTEEQ-WQARVKQREQEGSGNSGNKGRGAPGAQNHRGKPGGSPKG 282
Query: 235 --------GSFNKESVECYKCHKLGHFQYEC--PTWEE--SANYAELHEDHEELLL---- 278
S + V+C+ C + GH+ +C P + AN + E+ LL+
Sbjct: 283 KEAATGANSSRDISRVKCFNCDEFGHYARQCRKPRRQRRGEANLVQAAEEEPTLLMAHVV 342
Query: 279 ---------MARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSN 329
+ RT +G+ H T +KK +L ++G +G WFLD+G +N
Sbjct: 343 GVSLAGEATLGRTPSGQEVHLT------EKKVIL---DHEDGGEEEVTGD-WFLDTGATN 392
Query: 330 HMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQVFTEVYFIPELKNN 388
HM G R F LD TVK GD S++ ++G+G V + G + VY+IP+L+ N
Sbjct: 393 HMTGVRSAFAELDTGVVGTVKFGDGSVIEIQGRGTVVFRCKNGDHRSLDAVYYIPKLRKN 452
Query: 389 LLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTTIKD 448
++S+G+L R C + + L+ + + N ++ + + P C + + D
Sbjct: 453 IISVGRLDARGYDAHIWGGVCTLRDPNGLLLAKVKRDINYLYILKLHIANPVCMAASGGD 512
Query: 449 ESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRA 508
+ WH R+GHL + L+ LAQ MV+GLP + D+ C+ CL GKQ PFP+++ +RA
Sbjct: 513 TAWRWHARFGHLNFQSLRRLAQGNMVRGLPTIDHTDQLCDGCLAGKQRRLPFPEEAKFRA 572
Query: 509 ERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAE 568
+ L+L+H D+CGPI P + ++YF+ +DD R W+ LLS K A + K+F+ E
Sbjct: 573 QEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQAGVE 632
Query: 569 KESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVR 628
ESG KL LRTDRGGEF S EF ++C G++R+LTA Y+PQQN V ER+N+T++ R
Sbjct: 633 LESGRKLRALRTDRGGEFTSVEFMDYCTDRGMRRELTAPYSPQQNRVVERRNQTVVAAAR 692
Query: 629 CMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYA 688
ML +P FW EAV +VY+ NRSPT A+ +TP E W G++PSV R+FGCV Y
Sbjct: 693 SMLKAAGLPARFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYV 752
Query: 689 HVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDW----S 744
RKLD+R + +++G + SKAYR+YDPV++++ ++RDVVFDE++ W W
Sbjct: 753 KTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDETATWAWRDPED 812
Query: 745 SGAEQMEF---------FDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELEDNGEASVS 795
+ E+ EF + D E + P+ V S +SP NGE
Sbjct: 813 AATEEEEFTVDFFVSPVAPSVADAGEQTGTPVQAGVSPV--STGVLSSPPRAPNGEFCTP 870
Query: 796 ASPGVAEEERERRGRRNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTY 855
+ E + R VQ + E V D SD+ C A +P ++
Sbjct: 871 PTSVTPETDGGPVRYRRVQDILSTTEPVLDFDYSDQ------CLIAT-------EEPTSF 917
Query: 856 DEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKAR 915
EA K + WR+AM E++++E N TW LAELP G K+IG+KWVYK K + G I KHKAR
Sbjct: 918 VEAEKHECWRRAMVEELRSVEENQTWSLAELPAGHKAIGLKWVYKLKKDPSGAIVKHKAR 977
Query: 916 LVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVF 975
LVAKGY QQQG+DF EVFAPVAR +T+R ++A+AA +GW + +DVKSAFL+G+++E V+
Sbjct: 978 LVAKGYVQQQGVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVY 1037
Query: 976 VDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQG 1035
V QP G+ + KV KL KALYGLRQAPRAW +++D+ F +S ++ +YV+ G
Sbjct: 1038 VVQPPGFDDKTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVR-G 1096
Query: 1036 ENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIF 1095
+IV +YVDDLI TG+ + I FK M++ F+MSDLG +SY+LG+E++Q EGIF
Sbjct: 1097 VGDSKLIVGVYVDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEGIF 1156
Query: 1096 MCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSR 1155
+ QS YA ++LE+ GM+ NP + P+ KL+K G G VD T+Y+ ++GSL YL +R
Sbjct: 1157 LSQSAYAGKILEKTGMEGCNPTQVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYLVNTR 1216
Query: 1156 PDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRS--GSMKLISYTDSDY 1213
PDL YSV VSR+MEKPT H VK ++RY++GT+ G Y R G+ KL+ ++DSD
Sbjct: 1217 PDLAYSVGYVSRFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDSDM 1276
Query: 1214 AGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFS 1273
AGD+DDRKST+G +F G I+W S+KQ VV+LS+ EAE+IAA + ACQ IWL R++
Sbjct: 1277 AGDLDDRKSTTGVLFRYGGSLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLSRLIAE 1336
Query: 1274 LGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
L + +T+ DN S I L KNPV H RSKHI+ RYHF+R+ V +I + + +E
Sbjct: 1337 LLDAEPGQTTLMIDNKSAINLCKNPVFHDRSKHIDTRYHFIRECVEKKQIAVEYVCSE 1394
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301699|pir||F84531 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1347
Score = 918 bits (2373), Expect = 0.0
Identities = 505/1367 (36%), Positives = 779/1367 (56%), Gaps = 97/1367 (7%)
Query: 8 SQPAVPKFDGH-YDHWALLMENLLRSKEYWPIVADGVPALAPNAN-----AEQIKIHEEA 61
S +P FDG YD W++ M + R+++ W +V +GVP A A + EEA
Sbjct: 5 SHQVIPIFDGEKYDFWSIKMATIFRTRKLWSVVEEGVPVEPVQAEETPETARAKTLREEA 64
Query: 62 KLKDLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEV 121
D A L ++ I I +SKE WD ++ + QGS +V+ V+LQ+LRRE+E
Sbjct: 65 VTNDTMALQILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYEN 124
Query: 122 LGMKEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDV 181
L M + + + + + + + ++ GE T +++KIL SL KF+ +V +E++ D+
Sbjct: 125 LKMYDNDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDL 184
Query: 182 DTITIDQLQSSLLVQEQRMKGYRE--EEQALRATSSGKSERG--RGRTGNR--------- 228
D +T+ +L L QE R+ E +E A S G+ E G + T NR
Sbjct: 185 DALTMSELLGILKAQEARVTAREESTKEGAFYVRSKGR-ESGFKQDNTNNRVNQDKKWCG 243
Query: 229 ---------------GRGRGRGSFNKESVECYKCHKLGHFQYECPTWEESANYAELHEDH 273
+ G + +++CYKC K+GH+ EC
Sbjct: 244 FHKSSKHTEEECREKPKNDDHGKNKRSNIKCYKCGKIGHYANEC---------------- 287
Query: 274 EELLLMARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCG 333
R++ + +H TL+ + V++ +L + + +E S VW +DSGC+NHM
Sbjct: 288 -------RSKNKERAHVTLEEEDVNEDHMLFSASEEE--STTLREDVWLVDSGCTNHMTK 338
Query: 334 SREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLIQVFTEVYFIPELKNNLLSIG 393
+F N+++S +++ + I+ GKGD+ + ++ V+ +P L+ NLLS+
Sbjct: 339 EERYFSNINKSIKVPIRVRNGDIVMTAGKGDITVMTRHGKRIIKNVFLVPGLEKNLLSVP 398
Query: 394 QLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELW 453
Q++ + F+ K C I + I+ M+ ++ F + + + + ++ E E W
Sbjct: 399 QIISSGYWVRFQDKRCIIQDANGKEIMNIEMT-DKSFKIKLSSVEEEAMTANVQTE-ETW 456
Query: 454 HKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQ 513
HKR GH+ L+ + K +V GLP + C+ C GKQ FP++S + KL+
Sbjct: 457 HKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLE 516
Query: 514 LIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGE 573
++H+D+CGP++ +S RY++ F+DD+ WVY L +KS +FKKFK L EK+S
Sbjct: 517 IVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFATFKKFKALVEKQSNC 576
Query: 574 KLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTE 633
+ LR FCE GI RQ+T Y+PQQNG +ERKNR+++ M R ML E
Sbjct: 577 SIKTLRP----------MEVFCEDEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMLVE 626
Query: 634 KKVPREFWPEAVNWSVYIQNRSPTIAVKN-ITPEECWSGKKPSVNFFRIFGCVAYAHVPD 692
+ +P + W EAV S Y+QNR P+ A+++ +TP E W G KP+V+ RIFG + Y H+PD
Sbjct: 627 QDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPD 686
Query: 693 SQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWSSGAEQMEF 752
+RRKLD ++ I +G S ++K YR++ +K+ ++RDVVF E WDW E +
Sbjct: 687 QKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKT 746
Query: 753 FDEMVDTNEVSTVPILDEVEHQVHSETNDTSPELED---NGEASVSASPGVAEEERERRG 809
F V ++ + E Q + ++D S +++D NGE S+ V + ++
Sbjct: 747 F--------VMSINDIQESRDQQETSSHDLS-QIDDHANNGEGETSSH--VLSQVNDQEE 795
Query: 810 RRNVQQPVWMKEFVSGEDLSDEG--VSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKA 867
R + P K++ S +++ ++ + N A + + + +P TYDEA W +A
Sbjct: 796 RETSESP---KKYKSMKEILEKAPRMENDEAAQGIEACLVANEEPQTYDEARGDKEWEEA 852
Query: 868 MDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGI 927
M+ EI+ IE+N TW+L + P+ I VKW+YK K + G KHKARLVA+G++Q+ GI
Sbjct: 853 MNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGI 912
Query: 928 DFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGA 987
D+ E FAPV+R+DTIR +LA AA W ++Q+DVKSAFL+G+++E V+V QP G+ + G
Sbjct: 913 DYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGK 972
Query: 988 ERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLY-VKQGENGLAIIVSLY 1046
E KV +L+KALYGL+QAPRAWY RIDSYF + GF RS +D LY K+GE+ +IVSLY
Sbjct: 973 EEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGED--VLIVSLY 1030
Query: 1047 VDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVL 1106
VDDLI TGN LI+ FK +M+ EF+M+DLG ++YFLG+E+ Q+ GIF+ Q KYA +++
Sbjct: 1031 VDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLI 1090
Query: 1107 ERFGMKNSNPVRNPVVP-GTKLNKRGCGSE-VDATQYKQMIGSLMYLTVSRPDLMYSVSL 1164
++FGMK S V P+ P G + G E D T+Y++++G L+YL SRPD+MY+ S
Sbjct: 1091 DKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSY 1150
Query: 1165 VSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTS 1224
+SRYM P+ H Q KRV+RY+ GT + G+ + + +L+ Y+DSD+ G ++D+KST+
Sbjct: 1151 LSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTT 1210
Query: 1225 GYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTI 1284
GYVF LG W S KQ V+ ST EAE+IA + Q IWL+R+ G + I
Sbjct: 1211 GYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPI 1270
Query: 1285 YCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCSTE 1331
CDN S I + +NPV H R+KHI ++YHF+R+ G I+L +C E
Sbjct: 1271 LCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGE 1317
>gb|AAP51989.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530800|ref|NP_919702.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|21326494|gb|AAM47622.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20514806|gb|AAM23251.1| Putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1426
Score = 912 bits (2356), Expect = 0.0
Identities = 522/1382 (37%), Positives = 787/1382 (56%), Gaps = 114/1382 (8%)
Query: 18 HYDHWALLMENLLRSKEYWPIVADGVPALAPNANAEQIKIHEEAKLKDLKAKNYLFQSIE 77
+Y WALLM L+++ W + G +D A + + Q++
Sbjct: 60 NYPDWALLMRVNLQAQGLWTAIDPGYAEFR----------------EDRAALSAILQAVP 103
Query: 78 RSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGETVVNYFART 137
R +L + +T+K WD+++ G +V+ + + RR+FE + KE ET + R
Sbjct: 104 REMLRGLAKHDTAKAAWDAIKTMRVGVDRVREAKEKGFRRQFESMRFKERETPEEFAMRL 163
Query: 138 LSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQLQSSLLVQE 197
++V ++ G +++ + +K+LR + +K+ V S+E+ DV T+ +++L L +
Sbjct: 164 TAVVADIRDMGGVMEDEHVNKKLLRVVPKKYKPVAISLEQLLDVKTMALEELVGRLSTVD 223
Query: 198 QRM---------KGYREEEQALRATSSGKSERGRGRTGNRGRG-------RGR------- 234
K Y EEQ +A + + G G +GN+GRG RG+
Sbjct: 224 SYSDDEEGSDGGKLYLTEEQ-WQARVKQREQEGSGNSGNKGRGAPGTQNHRGKPGGSPKG 282
Query: 235 --------GSFNKESVECYKCHKLGHFQYEC--PTWEE--SANYAELHEDHEELLL---- 278
S + V+C+ C + GH+ +C P + AN + E+ LL+
Sbjct: 283 KEAATGANSSRDISRVKCFNCDEFGHYARQCRKPRRQRRGEANLVQAAEEEPTLLMAHVV 342
Query: 279 ---------MARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSN 329
+ RT G+ H T +KK +L + E + WFLD+G +N
Sbjct: 343 GVSLAGEATLGRTPGGQEVHLT------EKKVILDHEDGGE----EEVTRDWFLDTGATN 392
Query: 330 HMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIGGLI-QVFTEVYFIPELKNN 388
HM G R F LD TVK GD S++ ++G+G V + + VY+IP+L+ N
Sbjct: 393 HMTGVRSAFAELDTGVVGTVKFGDGSVIEIQGRGTVVFRCKNSDHRSLDTVYYIPKLRKN 452
Query: 389 LLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTTIKD 448
++S+G+L R C + D L+ + + N ++ + + P C + + D
Sbjct: 453 IISVGRLDARGYDAHIWGGVCTLRDPDGLLLAKVKRDINYLYILKLHIANPVCMAASGGD 512
Query: 449 ESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRA 508
+ WH R+GHL + L+ LAQ MV+GLP++ D+ C+ CL GKQ PFP+++ +RA
Sbjct: 513 MAWRWHARFGHLNFQSLRRLAQGNMVRGLPIIDHTDQLCDGCLAGKQRRLPFPEEAKFRA 572
Query: 509 ERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAE 568
+ L+L+H D+CGPI P + ++YF+ +DD R W+ LLS K A + K+F++ E
Sbjct: 573 QEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQVGVE 632
Query: 569 KESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVR 628
ESG KL LRTDRGGEF S EF ++C +G++R+LTA Y+PQQNGV ER+N+T++ R
Sbjct: 633 LESGRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNGVVERRNQTVVAAAR 692
Query: 629 CMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYA 688
ML +P FW EAV +VY+ NRSPT A+ +TP E W G++PSV R+FGCV Y
Sbjct: 693 SMLKAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYV 752
Query: 689 HVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDW----S 744
RKLD+R + +++G + SKAYR+YDPV++++ ++RDVVFDE++ W W +
Sbjct: 753 KTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFDEAATWAWRDPET 812
Query: 745 SGAEQMEF--------FDEMV-DTNEVSTVPILDEVEHQVHSETNDTSPELEDNGE---A 792
E+ EF D +V D E ++ P+ + + T + PE+ E
Sbjct: 813 EATEEEEFTVDFFVNPVDSVVADLGEQASTPVQGGT-YPASTATPPSPPEVPAGVEFCSP 871
Query: 793 SVSASPGVAEEERERRGRRNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDP 852
S +PG E R VQ + E V D SD+ C A +P
Sbjct: 872 PNSVTPGTNEGPIR---YRRVQDILSATEPVLDFDYSDQ------CLLAS-------EEP 915
Query: 853 MTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKH 912
M+ EA + WR+AM E+++IE N TW AELP G K+IG+KWVYK K + G + KH
Sbjct: 916 MSLAEAEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVVVKH 975
Query: 913 KARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDE 972
KARLVAKGY QQQGIDF EVFAPVAR +T+R ++A+AA +GW + +DVKSAFL+G ++E
Sbjct: 976 KARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGDLEE 1035
Query: 973 TVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYV 1032
V+V QP G+ +G E +V +L KALYGL+QAPRAW +++ + F++S+++ +YV
Sbjct: 1036 EVYVVQPPGFIEKGKEGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYV 1095
Query: 1033 KQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSE 1092
+ G +IV +YVDDLI +G I FK M+++F MSDLG +SY+LG+E++Q +
Sbjct: 1096 R-GTGSSRLIVGVYVDDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVVQKDD 1154
Query: 1093 GIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLT 1152
G+F+ Q+ YA ++LE+ GM+ N + P+ KL + G VD+T Y+ +GSL YL
Sbjct: 1155 GVFLSQTAYAAKILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDSTMYRSTVGSLRYLV 1214
Query: 1153 VSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQY--RRSGSMKLISYTD 1210
+RPDL YSV VSR+MEKPT H VK ++RY+ GT+D+G + R G ++LI ++D
Sbjct: 1215 NTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYIAGTLDVGCWFGRREKGELRLIGFSD 1274
Query: 1211 SDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRI 1270
SD AGD+DDRKST+G ++MLG I+W S+KQ VV+LS+ EAE+IAA + ACQ IWL R+
Sbjct: 1275 SDMAGDLDDRKSTTGVLYMLGDSLISWQSQKQKVVALSSCEAEYIAATTGACQGIWLNRL 1334
Query: 1271 LFS-LGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCS 1329
L LG+ G+ + + DN S I L KNPV+H RSKHI+ R+HF+R+ V +I + +
Sbjct: 1335 LAELLGEDPGQ-TVMKVDNKSAINLCKNPVLHDRSKHIDTRFHFIRECVEKKQIAVEYVR 1393
Query: 1330 TE 1331
TE
Sbjct: 1394 TE 1395
>ref|XP_474787.1| OSJNBb0026E15.10 [Oryza sativa (japonica cultivar-group)]
gi|38344222|emb|CAE03692.2| OSJNBb0026E15.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 879 bits (2271), Expect = 0.0
Identities = 511/1375 (37%), Positives = 763/1375 (55%), Gaps = 78/1375 (5%)
Query: 18 HYDHWALLMENLLRSKEYWPIVADGVPALAPNANAEQIKIHEEAKLKDLKAKNYLFQSIE 77
+Y WAL+M ++++ W V L +D +A + +++
Sbjct: 56 NYQDWALVMRVNMQAQCLWGAVEPEGDDLVDYR-------------QDQQALAAILRAVP 102
Query: 78 RSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLGMKEGETVVNYFART 137
+L T+ ET++E W++++ + G +V+ Q LRREF + K+ ETV ++ R
Sbjct: 103 AEMLATLAVKETAQEAWEAIKTRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRI 162
Query: 138 LSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDTITIDQLQSSLLVQE 197
+ N ++ G++I E +V+K+L+ + E + SIE DV+ ++++++ L E
Sbjct: 163 GGLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVE 222
Query: 198 QRMKG----------------YREEE------QALRATSSGKSERGRGRTGNRGRGRGRG 235
QR + + EEE +A + S G G RGRG+
Sbjct: 223 QRKQCKTAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRRGRGRGKKDD 282
Query: 236 SFNKESV------------ECYKCHKLGHFQYECPTWEESAN-YAELHEDHEELLLMART 282
KE+ C C K GH+ +C + ++ Y ED E LL+A+
Sbjct: 283 GAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDCRSKPKAQQAYVAQEEDEEPALLLAKV 342
Query: 283 ETG----KTSHTTLKIQG---------VDKKSLLMAKT-AQEGCSCPTSGKVWFLDSGCS 328
+ + + T + + + +++ AK AQ +W LD+G +
Sbjct: 343 QLDPPRPRVAAPTNVVSPPSAPRAPSPIGELAVVEAKVFAQLDDGGEHDPAMWILDTGAT 402
Query: 329 NHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQIG-GLIQVFTEVYFIPELKN 387
NHM GSR F LD + T TV+ GD S++ ++G+ V G + VY+IP L
Sbjct: 403 NHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEHRGIAGVYYIPRLTA 462
Query: 388 NLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTTIK 447
N++S+GQL + ++ L+++ R S + ++ + + P C +
Sbjct: 463 NIVSLGQLDRSGSKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIKLDIDRPVCLAARSA 522
Query: 448 DESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWR 507
+ + WH RYGHL + L+ LAQ+ MV+GLP+L ++ + C+ CL GKQ FP +S +R
Sbjct: 523 EPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVCDGCLLGKQRRAAFPTQSKYR 582
Query: 508 AERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLA 567
A+ L+L+H D+CGPI+P + + RYF+ +DD R W+ ++ K A + K F+ A
Sbjct: 583 ADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTMIRSKDEAANAIKHFQARA 642
Query: 568 EKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMV 627
E ESG KL LR DRG EF S EF E+C G+ RQLTA Y+PQQNGV ER+N+TI+
Sbjct: 643 EVESGRKLRALRMDRGSEFTSIEFGEYCANLGVGRQLTAPYSPQQNGVVERRNQTIVATA 702
Query: 628 RCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAY 687
R M+ K VP FW EA++ +V++ NRSPT ++ N TP E W G+ P+V+F R FGCV +
Sbjct: 703 RSMMKAKGVPGRFWGEAMSTAVFLLNRSPTKSLDNQTPYEAWYGQWPAVHFLRTFGCVGH 762
Query: 688 AHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVVFDESSGWDWS--- 744
+ +KLD+RS + LG + SKAYRLYDPVS+++ ++RDVVFDE WDW
Sbjct: 763 VKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDEDIAWDWGPVT 822
Query: 745 -SGAEQME-FFDEMVDTNEVSTVPILDEV----EHQVHSETNDTSPELEDNGEASVSASP 798
GA Q+E F E V T + T P S +P + EA +P
Sbjct: 823 PDGAPQLEPFTVEQVVTTTIGTAPASSPTPPSPPSPAPSAPTTPAPPSPPSPEAVEFVTP 882
Query: 799 GVAEEERERRGRRNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEA 858
+ + +V + + + G + S G + V E VS +P + EA
Sbjct: 883 PTQDSILDADADDDVVPRYRLVDNLLG-NASPPGHAPRVLEQLELHVVSA-DEPASLAEA 940
Query: 859 AKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVA 918
WR AM E+ AI N+TW L +LP G ++IG+KWVYK K +E+G I ++KARLVA
Sbjct: 941 EADPSWRGAMQDELNAIVDNDTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLVA 1000
Query: 919 KGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQ 978
KGY Q+QG+DF EVFA VAR +++R +LA+AA +GW V +DVKSAFL+G++ E V+V Q
Sbjct: 1001 KGYVQRQGVDFDEVFALVARLESVRLLLAVAAHQGWQVHHMDVKSAFLNGELLEEVYVSQ 1060
Query: 979 PQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENG 1038
P G+ + KVY+LHKALYGLRQAPRAW +++DS GF RS S+H +Y + G
Sbjct: 1061 PPGFVDDNHKNKVYRLHKALYGLRQAPRAWNAKLDSSLLSLGFHRSSSEHGVYTRT-RGG 1119
Query: 1039 LAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQ 1098
++V +YVDDLI TG+ + I FK M + F MSDLG + Y+LG+E+ Q+S+GI + Q
Sbjct: 1120 RRLMVGVYVDDLIITGDHDDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQ 1179
Query: 1099 SKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDL 1158
+ YA ++LE+ G+K+ NP + P+ KL K VDAT Y+ ++GSL YL +RPDL
Sbjct: 1180 AAYAGKILEKAGLKDCNPCQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDL 1239
Query: 1159 MYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQY---RRSGSMKLISYTDSDYAG 1215
+SV VSR+ME P E H+ V+R++RY+ GT GI++ R L+ Y+DSD AG
Sbjct: 1240 AFSVGYVSRFMESPREDHLAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAG 1299
Query: 1216 DVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLG 1275
D D+RKSTSG +F + G + W S KQ VV+LS+ EAE+IAA + CQ +WL R+L +
Sbjct: 1300 DPDERKSTSGQIFFINGGPVTWQSSKQKVVALSSCEAEYIAAAAATCQGVWLARLLAEVL 1359
Query: 1276 QVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
+ + DN STI L KNPV H RSKHI+V+YH++R+ IE++ T
Sbjct: 1360 GDEITAPLLKVDNQSTISLIKNPVHHDRSKHIDVKYHYIRECAEKKLIEMMFVGT 1414
>gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301692|pir||H84467 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1307
Score = 876 bits (2263), Expect = 0.0
Identities = 499/1297 (38%), Positives = 740/1297 (56%), Gaps = 97/1297 (7%)
Query: 64 KDLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLG 123
K+ A+ LFQS+ S + + +TSK +W++++ +N G+ +VK +LQ L EF+ L
Sbjct: 23 KNDMARALLFQSVPESTILQVGKHKTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLN 82
Query: 124 MKEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLT-EKFNYVVCSIEESNDVD 182
MK+ ET+ + R I K + GE I+E+ IV+K L+SL +K+ +++ ++E+ D++
Sbjct: 83 MKDNETIDEFVGRISEISTKSESLGEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLN 142
Query: 183 TITIDQLQSSLLVQEQRM--KGYREEEQA----LRATSSGKSERGRGRTGNRGRGRGRGS 236
T + + + E R+ + EEQ + SS + GRGR R GRGRG
Sbjct: 143 TTGFEDIVGRMKTYEDRVCDEDDSPEEQGKLMYANSESSYDTRGGRGRGRGRSSGRGRGG 202
Query: 237 F-----NKESVECYKCHKLGHFQYEC--------PTWEESANYAELHEDHEELLLMARTE 283
+ +K V CY+C K GH+ EC E+ N +ED +E+ + E
Sbjct: 203 YGYQQRDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQN----NEDDDEIESLMMHE 258
Query: 284 TGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDE 343
+ ++K + E CS W+LD+G SNHM G+ +WF L+E
Sbjct: 259 VVYLNERSVKPKEF------------EACS----DNSWYLDNGASNHMTGNLQWFSKLNE 302
Query: 344 SFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQVFTEVYFIPELKNNLLSIGQLLERDLSI 402
T V+ GDDS + +KGKG + L GG+ + T+VYFIP+LK+N++S+GQ E +
Sbjct: 303 MITGKVRFGDDSRIDIKGKGSIVLITKGGIRKTLTDVYFIPDLKSNIISLGQATEAGCDV 362
Query: 403 TFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGY 462
K ++ ++ L++++ S NR++ V + C
Sbjct: 363 RMKDDQLTLHDREGCLLLRATRSRNRLYKVDLNVENVKCLQLEAAT-------------- 408
Query: 463 SGLKILAQKAMVKGLPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGP 522
+ +K +V G+ + + + C CL GKQ PFP+ +T+RA + L+L+H D+CGP
Sbjct: 409 -----MVRKELVIGISNIPKEKETCGSCLLGKQARQPFPKATTYRASQVLELVHGDLCGP 463
Query: 523 IKPKSNSQKRYFITFIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDR 582
I + ++KRY + IDD R W LL EKS A E F+ FK E+ESG K+ RTD+
Sbjct: 464 ITQSTTAKKRYILVLIDDHTRYMWSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDK 523
Query: 583 GGEFNSREFTEFCELNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWP 642
GGEF S+EF +FC GI R LTA YTPQQNGV ER+NRT++ M R +L K+P W
Sbjct: 524 GGEFVSQEFQDFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMKMPNYLWG 583
Query: 643 EAVNWSVYIQNRSPTIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRS 702
EAV S YI NR T +++N TP E + +KP+V R+FGC+ YA + RKLD+RS
Sbjct: 584 EAVRHSTYIINRVGTRSLQNQTPYEVFKQRKPNVEHLRVFGCIGYAKIEGPHLRKLDDRS 643
Query: 703 IKCIYLGSSEESKAYRLYDPVSKKII--INRDVVFDESSGWDWSSGAEQMEFFDEMVDTN 760
+YLG+ SKAYRL DP ++KII N D + SG + EF + + +
Sbjct: 644 KMLVYLGTEPGSKAYRLLDPTNRKIIKWNNSDSETRDISG---TFSLTLGEFGNNGIQES 700
Query: 761 EVSTVPILDEVEHQVHSETNDTSPELEDNGEASVSASPGVAEEERE----------RRGR 810
D++E + + E ++ S E+ GE + + EE + RR
Sbjct: 701 --------DDIETEKNGEESENSH--EEEGENEHNEQEQIDAEETQPSHATPLPTLRRST 750
Query: 811 RNVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDL 870
R V +P ++ ++V ++ E V ++I+ +P + EA K WR A
Sbjct: 751 RQVGKPNYLDDYVLMAEIEGEQV-----------LLAINDEPWDFKEANKLKEWRDACKE 799
Query: 871 EIQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFT 930
EI +IE+N TW L +LP K IG+KWV+K K N G I K+KARLVAKGY Q+ GID+
Sbjct: 800 EILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKYKARLVAKGYVQRHGIDYD 859
Query: 931 EVFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERK 990
EVFA VAR +TIR I+A+AA GW V LDVK+AFLHG++ E V+V QP+G+ + E K
Sbjct: 860 EVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDVYVTQPEGFTNKDNEGK 919
Query: 991 VYKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDL 1050
VYKLHKALYGL+QAPRAW ++++ Q+ FV+ + ++Y +Q E L +IV++YVDDL
Sbjct: 920 VYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQEEKKL-LIVAIYVDDL 978
Query: 1051 IYTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFG 1110
+ TG+ LI FK M +F+MSDLG+++Y+LG+E+L GI + Q +YA +++E G
Sbjct: 979 LVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGIILRQERYAMKIIEEAG 1038
Query: 1111 MKNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYME 1170
M N NPV P+ G +L K + Y++MIG L Y+ +RPDL Y V ++SRY++
Sbjct: 1039 MSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCLRYIVHTRPDLSYCVGVLSRYLQ 1098
Query: 1171 KPTELHVQIVKRVMRYLNGTVDMGIQYRRSGSMKLISYTDSDYAGDVDDRKSTSGYVFML 1230
+P E H +K+V+RYL GT+ G+ +R L+ Y+DS ++ D+DD KST+G++F L
Sbjct: 1099 QPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSADLDDGKSTAGHIFYL 1158
Query: 1231 GSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNSS 1290
I W S+KQ VV+LS+ EAEF+AA A Q IWL+ + + + I DN S
Sbjct: 1159 HQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVCGTTSEKVMIRVDNKS 1218
Query: 1291 TIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVH 1327
I L+KN V HGRSKHI+ RYHF+R+ V + +E+ H
Sbjct: 1219 AIALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDH 1255
>ref|NP_912850.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1330
Score = 872 bits (2252), Expect = 0.0
Identities = 501/1336 (37%), Positives = 756/1336 (56%), Gaps = 127/1336 (9%)
Query: 64 KDLKAKNYLFQSIERSILETILNMETSKEIWDSMRLKNQGSTKVKRVQLQALRREFEVLG 123
+D A + + Q++ R +L + +T+K WD+++ G +V+ + Q RR+FE +
Sbjct: 23 EDWAALSAILQAVPREMLRGLAKHDTAKAAWDAIKTMRVGVDRVREAKEQGFRRQFESMR 82
Query: 124 MKEGETVVNYFARTLSIVNKMKIQGESIKETLIVEKILRSLTEKFNYVVCSIEESNDVDT 183
KE ET + R ++V ++ G +++ + +K+LR + +K+ V S+E+ DV T
Sbjct: 83 FKERETPEEFAMRLTAVVADIRDMGGVMEDEHVNKKLLRVVPKKYKPVAISLEQLLDVKT 142
Query: 184 ITIDQLQSSLLVQEQRM---------KGYREEEQALRATSSGKSERGRGRTGNRGRG--- 231
+ +++L L + K Y EEQ +A + + G G +GN+GRG
Sbjct: 143 MALEELVGRLSTVDSYSDDEEGSDGGKLYLTEEQ-WQARVKQREQEGSGNSGNKGRGAPG 201
Query: 232 ----RGR---------------GSFNKESVECYKCHKLGHFQYEC--PTWEE--SANYAE 268
RG+ S + V+C+ C + GH+ +C P + AN +
Sbjct: 202 TQNHRGKPGGSPKGKEAATGANSSRDISRVKCFNCDEFGHYARQCRKPRRQRRGEANLVQ 261
Query: 269 LHEDHEELLL-------------MARTETGKTSHTTLKIQGVDKKSLLMAKTAQEGCSCP 315
E+ LL+ + RT G+ H T +KK +L + E
Sbjct: 262 AAEEEPTLLMAHVVGVSLAGEATLGRTPGGQEVHLT------EKKVILDHEDGGE----E 311
Query: 316 TSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIMTVKGKGDVKLQI-GGLIQ 374
+ WFLD+G +NHM G R F LD TVK GD S++ ++G+G V + G +
Sbjct: 312 EVTRDWFLDTGATNHMTGVRSAFAELDTGVVGTVKFGDGSVIEIQGRGTVVFRCKNGDHR 371
Query: 375 VFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDKGLIIQSRMSSNRMFAVIA 434
VY+IP+L+ N++S+G+L R C + D L+ + + N ++ +
Sbjct: 372 SLDTVYYIPKLRKNIISVGRLDARGYDAHIWGGVCTLRDPDGLLLAKVKRDINYLYILKL 431
Query: 435 TMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKGLPMLGELDKPCEECLKGK 494
+ P C + + D + WH R+GHL + L+ LAQ MV+GLP++ D+ C+ CL GK
Sbjct: 432 HIANPVCMAASGGDTAWRWHARFGHLNFQSLRRLAQGNMVRGLPIIDHTDQLCDGCLAGK 491
Query: 495 QHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFITFIDDFCRKTWVYLLSEKS 554
Q PFP+++ +RA+ L+L+H D+CGPI P + ++YF+ +DD R W+ LLS K
Sbjct: 492 QRRLPFPEEAKFRAQEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKH 551
Query: 555 GALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCELNGIKRQLTASYTPQQNG 614
A + K+F++ E ESG KL LRTDRGGEF S EF ++C +G++R+LTA Y+PQQNG
Sbjct: 552 EAATAIKQFQVGVELESGRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNG 611
Query: 615 VSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSPTIAVKNITPEECWSGKKP 674
V ER+N+T++ R ML +P FW EAV +VY+ NRSPT A+ +TP E W G++P
Sbjct: 612 VVERRNQTVVAAARSMLKAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRP 671
Query: 675 SVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKAYRLYDPVSKKIIINRDVV 734
SV R+FGCV Y RKLD+R + +++G + SKAYR+YDPV +++ ++RDVV
Sbjct: 672 SVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVVRRVCVSRDVV 731
Query: 735 FDESSGWDW----SSGAEQMEF--------FDEMV-DTNEVSTVPILDEVEHQVHSETND 781
FDE++ W W + E+ EF D +V D E ++ P+ + + T
Sbjct: 732 FDEAATWAWRDPETEATEEEEFTVDFFVNPVDSVVADLGEQASTPVQGGT-YPASTATPP 790
Query: 782 TSPELEDNGEASV---SASPGVAEEERERRGRRNVQQPVWMKEFVSGEDLSDEGVSNFVC 838
+ PE+ E S +PG E R VQ + E V D SD+ C
Sbjct: 791 SPPEVPAGVEFCSPPNSVTPGTNEGPIRYR---RVQDILSATEPVLDFDYSDQ------C 841
Query: 839 ADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLEIQAIERNNTWQLAELPKGDKSIGVKWV 898
A +PM+ EA + WR+AM E+++IE N TW AELP G K+IG+KWV
Sbjct: 842 LLAS-------EEPMSLAEAEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWV 894
Query: 899 YKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTEVFAPVARWDTIRTILAIAAVRGWNVFQ 958
YK K + G + KHKARLVAKGY QQQGIDF EVFAPVAR +T+R ++A+AA +GW +
Sbjct: 895 YKVKKDPSGVVVKHKARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHH 954
Query: 959 LDVKSAFLHGKIDETVFVDQPQGYQVRGAERKVYKLHKALYGLRQAPRAWYSRIDSYFQK 1018
+DVKSAFL+G ++E V+V QP G+ +G E +V +L KALYGL+QAPRAW +++ +
Sbjct: 955 MDVKSAFLNGDLEEEVYVVQPPGFIEKGKEGQVLRLKKALYGLKQAPRAWNAKLHNTLIS 1014
Query: 1019 QGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLIYTGNCELLISEFKASMEREFDMSDLGK 1078
F++S+++ +YV+ TG+ L++ DLG
Sbjct: 1015 LNFIKSETESAVYVRG------------------TGSSRLIVGV------------DLGL 1044
Query: 1079 MSYFLGVEILQNSEGIFMCQSKYAKEVLERFGMKNSNPVRNPVVPGTKLNKRGCGSEVDA 1138
+SY+LG+E++Q +G+F+ Q+ YA ++LE+ GM+ N + P+ KL + G VD+
Sbjct: 1045 LSYYLGMEVVQKDDGVFLSQTAYAAKILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDS 1104
Query: 1139 TQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEKPTELHVQIVKRVMRYLNGTVDMGIQY- 1197
T Y+ +GSL YL +RPDL YSV VSR+MEKPT H VK ++RY+ GT+D+G +
Sbjct: 1105 TMYRSTVGSLRYLVNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYIAGTLDVGCWFG 1164
Query: 1198 -RRSGSMKLISYTDSDYAGDVDDRKSTSGYVFMLGSGSIAWSSKKQAVVSLSTTEAEFIA 1256
R G ++LI ++DSD AGD+DDRKST+G ++MLG I+W S+KQ VV+LS+ EAE+IA
Sbjct: 1165 RREKGELRLIGFSDSDMAGDLDDRKSTTGVLYMLGDSLISWQSQKQKVVALSSCEAEYIA 1224
Query: 1257 AVSCACQCIWLRRILFS-LGQVQGKCSTIYCDNSSTIKLSKNPVMHGRSKHINVRYHFLR 1315
A + ACQ IWL R+L LG+ G+ + + DN S I L KNPV+H RSKHI+ R+HF+R
Sbjct: 1225 ATTGACQGIWLNRLLAELLGEDPGQ-TVMKVDNKSAINLCKNPVLHDRSKHIDTRFHFIR 1283
Query: 1316 DLVRDGRIELVHCSTE 1331
+ V +I + + TE
Sbjct: 1284 ECVEKKQIAVEYVRTE 1299
>ref|XP_506380.1| PREDICTED OSJNBa0007H12.22 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 1094
Score = 855 bits (2209), Expect = 0.0
Identities = 465/1061 (43%), Positives = 647/1061 (60%), Gaps = 51/1061 (4%)
Query: 298 DKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIM 357
+KK +L + A+E + WFLD+G +NHM GSR F +LD TVK GD S++
Sbjct: 28 EKKVILNHEVAEE----EDNTTEWFLDTGATNHMTGSRSAFADLDTGVVGTVKFGDGSVV 83
Query: 358 TVKGKGDVKLQI-GGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDK 416
++G+G V Q G + VYFIP+L N++SIG+L R C + D
Sbjct: 84 DIRGRGTVLFQCKNGDHRSLEAVYFIPKLCKNIISIGRLDARGYDAHIYHGVCTLRDPDG 143
Query: 417 GLIIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKG 476
L+ + + S + ++ + M P C + + + WH R+GHL + L+ LAQ MV+G
Sbjct: 144 LLLAKVKRSPSFLYILKLNMARPICLAANGTETAWRWHARFGHLNFQALRRLAQAEMVRG 203
Query: 477 LPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFIT 536
LP++ +D+ C+ CL GKQ PFP K+ +RA+ L+L+H D+CGPI P + ++YF+
Sbjct: 204 LPVIDHVDQLCDGCLAGKQRRVPFPDKARFRAQDALELVHGDLCGPIAPATPGGRKYFLL 263
Query: 537 FIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCE 596
+DD R W+ LLS K A + K+FK E ESG KL LRTDRGGEF S EFTEFC
Sbjct: 264 LVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMESGRKLRALRTDRGGEFTSVEFTEFCA 323
Query: 597 LNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSP 656
G+ RQLTA Y+PQQNGV ER+N T++ R ML +P +FW EAV +VY+ NRSP
Sbjct: 324 DRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSMLKAAGMPAQFWGEAVMAAVYLWNRSP 383
Query: 657 TIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKA 716
T ++ +TP E W G++PSV ++FGCV Y RKLD+R + +++G + SKA
Sbjct: 384 TKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKA 443
Query: 717 YRLYDPVSKKIIINRDVVFDESSGWDW------SSGAEQ---MEFFDEMVDTNEVSTVPI 767
YR+YDPVS+++ ++RDVVFDE++ W W +G E+ +EFF + N V V
Sbjct: 444 YRMYDPVSRRVYVSRDVVFDEAAMWPWRDPEVTQTGGEEDFTVEFFSTPLGGNRVPDVV- 502
Query: 768 LDEVEHQVHSETNDTSPELEDNGEASV-----SASPGVAE-------EERERRGR----R 811
VEH ET L A V S+SP E E G R
Sbjct: 503 ---VEHGGARETETAPSPLATPDAAPVWSPVTSSSPAGVEFCTPPSDASIESDGAPPRFR 559
Query: 812 NVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLE 871
V + V D +DE C AE +P ++ EA K W KAM+ E
Sbjct: 560 TVNNVLATTTPVLDFDYNDE------CLIAE-------QEPFSFKEAEKEQCWMKAMEEE 606
Query: 872 IQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTE 931
+ +IE NNTW L +LP ++IG+KWVYK K + +GEI K+KARLVAKGY QQQGID+ E
Sbjct: 607 MSSIEGNNTWFLCDLPSDHRAIGLKWVYKIKRSAEGEILKYKARLVAKGYVQQQGIDYEE 666
Query: 932 VFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKV 991
VFAPVAR +T+R ++A+AA GW + +DVKSAFL+G+++E V+V QP G+ V E KV
Sbjct: 667 VFAPVARMETVRLLVALAAHEGWQIHHMDVKSAFLNGELEEDVYVVQPPGFVVEHKENKV 726
Query: 992 YKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLI 1051
KL KALYGL+QAPRAWY+++DS FVRS +++ +Y + GE ++V +YVDDLI
Sbjct: 727 LKLKKALYGLKQAPRAWYAKLDSTLANLDFVRSATENAVYTR-GEGNARLVVGVYVDDLI 785
Query: 1052 YTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGM 1111
TG I++FK M F MS+LG +SY+LG+E+ Q EGI M Q+ YA +LE+ GM
Sbjct: 786 ITGALGTEIAKFKEQMRSMFSMSNLGLLSYYLGMEVKQTEEGITMSQAGYAGRILEKAGM 845
Query: 1112 KNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEK 1171
+ NP + P+ KL K+G +DATQ++ +IGSL YL +RPDL YSV VSRYME
Sbjct: 846 QGCNPCQVPMDARLKL-KKGVEDCIDATQFRSIIGSLRYLVNTRPDLSYSVGYVSRYMEN 904
Query: 1172 PTELHVQIVKRVMRYLNGTVDMGIQYRRSGSM--KLISYTDSDYAGDVDDRKSTSGYVFM 1229
P H +K ++RY+ G++++G+++R+ +L+ Y+DSD AGDVDDRKST+G +F
Sbjct: 905 PGAEHWAAMKHILRYVAGSLNIGLKFRKGEEKFPRLVGYSDSDMAGDVDDRKSTTGVLFK 964
Query: 1230 LGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNS 1289
LG I W S+KQ +V+LS+ EAE+IAA + ACQ IWL R+L L + C+ + DN
Sbjct: 965 LGENLITWQSQKQKIVALSSCEAEYIAATTAACQGIWLARLLGELQMKKPCCTMLKVDNK 1024
Query: 1290 STIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
S I L KNPV+H RSKHI+ RYHF+R+ V +E+ + S+
Sbjct: 1025 SAINLCKNPVLHDRSKHIDTRYHFIRERVERKEVEVEYTSS 1065
>gb|AAU90089.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1094
Score = 855 bits (2208), Expect = 0.0
Identities = 466/1061 (43%), Positives = 645/1061 (59%), Gaps = 51/1061 (4%)
Query: 298 DKKSLLMAKTAQEGCSCPTSGKVWFLDSGCSNHMCGSREWFHNLDESFTTTVKLGDDSIM 357
+KK +L + A+E + WFLD+G +NHM GSR F +LD TVK GD S++
Sbjct: 28 EKKVILDHEVAEE----EDNTTEWFLDTGATNHMTGSRSAFADLDTGVVGTVKFGDGSVV 83
Query: 358 TVKGKGDVKLQI-GGLIQVFTEVYFIPELKNNLLSIGQLLERDLSITFKKKWCRIYHKDK 416
++G+G V Q G + VYFIP+L N++SIG+L R C + D
Sbjct: 84 DIRGRGTVLFQCKNGDHRSLEAVYFIPKLCKNIISIGRLDARGYDAHIYHGVCTLRDPDG 143
Query: 417 GLIIQSRMSSNRMFAVIATMIAPTCFSTTIKDESELWHKRYGHLGYSGLKILAQKAMVKG 476
L+ + + S + ++ + M P C + + + WH R+GHL + L+ LAQ MV+G
Sbjct: 144 LLLAKVKRSPSFLYILKLNMARPICLAANGTETAWRWHARFGHLNFQALRRLAQAEMVRG 203
Query: 477 LPMLGELDKPCEECLKGKQHIDPFPQKSTWRAERKLQLIHSDICGPIKPKSNSQKRYFIT 536
LP++ +D+ C+ CL GKQ PFP K+ +RA+ L+L+H D+CGPI P + ++YF+
Sbjct: 204 LPVIDHVDQLCDGCLAGKQRRVPFPDKARFRAQDALELVHGDLCGPIAPATPGGRKYFLL 263
Query: 537 FIDDFCRKTWVYLLSEKSGALESFKKFKLLAEKESGEKLSCLRTDRGGEFNSREFTEFCE 596
+DD R W+ LLS K A + K+FK E ESG KL LRTDRGGEF S EFTEFC
Sbjct: 264 LVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMESGRKLRALRTDRGGEFTSVEFTEFCA 323
Query: 597 LNGIKRQLTASYTPQQNGVSERKNRTIMNMVRCMLTEKKVPREFWPEAVNWSVYIQNRSP 656
G+ RQLTA Y+PQQNGV ER+N T++ R ML +P +FW EAV +VY+ NRSP
Sbjct: 324 DRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSMLKAAGMPAQFWGEAVVAAVYLLNRSP 383
Query: 657 TIAVKNITPEECWSGKKPSVNFFRIFGCVAYAHVPDSQRRKLDNRSIKCIYLGSSEESKA 716
T ++ +TP E W G++PSV ++FGCV Y RKLD+R + +++G + SKA
Sbjct: 384 TKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKA 443
Query: 717 YRLYDPVSKKIIINRDVVFDESSGWDW------SSGAEQ---MEFFDEMVDTNEVSTVPI 767
YR+YDPVS++ ++RDVVFDE++ W W +G E+ +EFF + N V V
Sbjct: 444 YRMYDPVSRRFYVSRDVVFDEAAMWPWRDPEVTQTGGEEDFTVEFFSTPLGGNRVPDVV- 502
Query: 768 LDEVEHQVHSETNDTSPELEDNGEASV-----SASPGVAE-------EERERRGR----R 811
VEH ET L A V S+SP E E G R
Sbjct: 503 ---VEHGGARETETAPSPLATPDAAPVWSPVTSSSPAGVEFCTPPSDASIESDGAPPRFR 559
Query: 812 NVQQPVWMKEFVSGEDLSDEGVSNFVCADAEYSFVSIHSDPMTYDEAAKSDHWRKAMDLE 871
V + V D DE C AE +P ++ EA K W KAM+ E
Sbjct: 560 TVNNVLATTTPVLDFDYDDE------CLIAE-------QEPFSFKEAEKEQCWMKAMEEE 606
Query: 872 IQAIERNNTWQLAELPKGDKSIGVKWVYKTKLNEKGEIEKHKARLVAKGYAQQQGIDFTE 931
+ +IE NNTW L +LP ++IG+KWVYK K + +GEI K+KARLVAKGY QQQGID+ E
Sbjct: 607 MSSIEGNNTWFLCDLPSDHRAIGLKWVYKIKRSAEGEILKYKARLVAKGYVQQQGIDYEE 666
Query: 932 VFAPVARWDTIRTILAIAAVRGWNVFQLDVKSAFLHGKIDETVFVDQPQGYQVRGAERKV 991
VFAPVAR +T+R ++A+AA GW + +DVKSAFL+G+++E V+V QP G+ V E KV
Sbjct: 667 VFAPVARMETVRLLVALAAHEGWQIHHMDVKSAFLNGELEEDVYVVQPPGFVVEHKENKV 726
Query: 992 YKLHKALYGLRQAPRAWYSRIDSYFQKQGFVRSDSDHTLYVKQGENGLAIIVSLYVDDLI 1051
KL KALYGL+QAPRAWY+++DS FVRS +++ +Y + GE ++V +YVDDLI
Sbjct: 727 LKLKKALYGLKQAPRAWYAKLDSTLANLDFVRSATENAVYTR-GEGNARLVVGVYVDDLI 785
Query: 1052 YTGNCELLISEFKASMEREFDMSDLGKMSYFLGVEILQNSEGIFMCQSKYAKEVLERFGM 1111
TG I++FK M F MSDLG +SY+LG+E+ Q EGI M Q+ YA +LE+ GM
Sbjct: 786 ITGALGTEIAKFKEQMRSMFSMSDLGLLSYYLGMEVKQTEEGITMSQAGYAGRILEKAGM 845
Query: 1112 KNSNPVRNPVVPGTKLNKRGCGSEVDATQYKQMIGSLMYLTVSRPDLMYSVSLVSRYMEK 1171
+ NP + P+ KL K+G +DATQ++ +IGSL YL +RPDL YSV VSRYME
Sbjct: 846 QGCNPCQVPMDARLKL-KKGVEDCIDATQFRSIIGSLRYLVNTRPDLSYSVGYVSRYMEN 904
Query: 1172 PTELHVQIVKRVMRYLNGTVDMGIQYRRSGSM--KLISYTDSDYAGDVDDRKSTSGYVFM 1229
P H +K ++RY+ G++++G+++R+ +L+ Y+DSD AGDVDDRKST+G +F
Sbjct: 905 PGAEHWAAMKHILRYVAGSLNIGLKFRKGEEKFPRLVGYSDSDMAGDVDDRKSTTGVLFK 964
Query: 1230 LGSGSIAWSSKKQAVVSLSTTEAEFIAAVSCACQCIWLRRILFSLGQVQGKCSTIYCDNS 1289
LG I W S+KQ +V+LS+ EAE+IAA + ACQ IWL R+L L + C+ + DN
Sbjct: 965 LGENLITWQSQKQKIVALSSCEAEYIAATTAACQGIWLARLLGELQMKKPCCAMLKVDNK 1024
Query: 1290 STIKLSKNPVMHGRSKHINVRYHFLRDLVRDGRIELVHCST 1330
S I L KNPV+H RSKHI+ RYHF+R+ V +E+ + S+
Sbjct: 1025 SAINLCKNPVLHDRSKHIDTRYHFIRERVERKEVEVEYTSS 1065
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,220,606,693
Number of Sequences: 2540612
Number of extensions: 94668560
Number of successful extensions: 276643
Number of sequences better than 10.0: 3945
Number of HSP's better than 10.0 without gapping: 2504
Number of HSP's successfully gapped in prelim test: 1448
Number of HSP's that attempted gapping in prelim test: 265459
Number of HSP's gapped (non-prelim): 7332
length of query: 1331
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1191
effective length of database: 507,674,714
effective search space: 604640584374
effective search space used: 604640584374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0112.11