BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0111b.7
(402 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 236 1e-60
emb|CAE05045.2| OSJNBa0049H08.6 [Oryza sativa (japonica cultivar... 194 4e-48
ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cu... 194 5e-48
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 193 7e-48
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 193 9e-48
emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa (japonica cultiva... 192 1e-47
emb|CAD79705.1| hypothetical Gag-Pol polyprotein [Oryza sativa (... 192 2e-47
ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cu... 191 3e-47
ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultiv... 191 3e-47
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 191 3e-47
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 191 3e-47
gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-... 191 3e-47
ref|XP_474185.1| OSJNBa0011F23.1 [Oryza sativa (japonica cultiva... 191 3e-47
ref|XP_474078.1| OSJNBa0063C18.15 [Oryza sativa (japonica cultiv... 191 3e-47
ref|XP_470020.1| putative polyprotein [Oryza sativa (japonica cu... 191 3e-47
gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cult... 191 4e-47
gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] 191 4e-47
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-... 190 8e-47
emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar... 190 8e-47
gb|AAM12303.1| putative polyprotein [Oryza sativa (japonica cult... 189 1e-46
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 236 bits (601), Expect = 1e-60
Identities = 115/170 (67%), Positives = 140/170 (81%), Gaps = 1/170 (0%)
Query: 39 SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHREAMAYASSQLKLHERNY 98
+FQ +K++LT +PVL LP +EP+EVYC+AS QGLGCVLMQH++ +AYAS QLK+HERNY
Sbjct: 93 NFQLLKRKLTTSPVLVLPQSEEPHEVYCDASHQGLGCVLMQHKKVVAYASRQLKIHERNY 152
Query: 99 LTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYDF 158
THDLELA VVFALKIWRHYLYG TFTVFS+HK LKYLFD K+LNM QR W+ ++D+DF
Sbjct: 153 PTHDLELAAVVFALKIWRHYLYGCTFTVFSDHKSLKYLFDQKELNMRQRRWIETLKDFDF 212
Query: 159 TLLYHPGKANVVADALSHQAIHVSSL-MVKKLELIETFRDLSLDAKIKLG 207
TL YHPGKANVVADALS +++ VSSL M ++ EL E FRDL L+ + G
Sbjct: 213 TLQYHPGKANVVADALSRRSVSVSSLIMARQQELWEAFRDLHLNVEFAPG 262
>emb|CAE05045.2| OSJNBa0049H08.6 [Oryza sativa (japonica cultivar-group)]
gi|50923517|ref|XP_472119.1| OSJNBa0049H08.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1523
Score = 194 bits (493), Expect = 4e-48
Identities = 96/164 (58%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E FH SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1034 KLARPMTELLKKEKKFHWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1093
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK K
Sbjct: 1094 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSFK 1153
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1154 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1197
>ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1572
Score = 194 bits (492), Expect = 5e-48
Identities = 95/164 (57%), Positives = 119/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQE+KKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 895 KLARPMTELLKKEKKFQWSAACEDSFQELKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 954
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ ++ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 955 CVLMQEQKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1014
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALSH+A
Sbjct: 1015 YIFTQTELNMRQRKWLELIKDYDLGIHYHPGKANVVADALSHKA 1058
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 193 bits (491), Expect = 7e-48
Identities = 96/164 (58%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1085 KLARPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1144
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1145 CVLMQERKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1204
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1205 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1248
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 193 bits (490), Expect = 9e-48
Identities = 96/164 (58%), Positives = 125/164 (75%), Gaps = 1/164 (0%)
Query: 39 SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHREAMAYASSQLKLHERNY 98
SFQE+K+RLT AP+LTLP+ Y VY +AS GLGCVLMQ + +AYAS QLK +E+NY
Sbjct: 290 SFQELKQRLTTAPILTLPVAGAGYVVYSDASLNGLGCVLMQDDKVIAYASRQLKEYEKNY 349
Query: 99 LTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYDF 158
THDLELA VVFALK+WRHYLYG V+++HK LKYLF K+LN+ QR W+ ++DYD
Sbjct: 350 PTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQKELNLRQRRWLELLKDYDL 409
Query: 159 TLLYHPGKANVVADALSHQAI-HVSSLMVKKLELIETFRDLSLD 201
T+LYHPGKANVVADALS +++ +++ +V + LIE + L L+
Sbjct: 410 TILYHPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRLELE 453
>emb|CAE03840.1| OSJNBb0013J13.17 [Oryza sativa (japonica cultivar-group)]
gi|50930413|ref|XP_474734.1| OSJNBb0013J13.17 [Oryza
sativa (japonica cultivar-group)]
Length = 864
Score = 192 bits (489), Expect = 1e-47
Identities = 96/164 (58%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 337 KLARPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 396
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 397 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 456
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 457 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 500
>emb|CAD79705.1| hypothetical Gag-Pol polyprotein [Oryza sativa (indica
cultivar-group)]
Length = 1820
Score = 192 bits (488), Expect = 2e-47
Identities = 96/164 (58%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1144 KLARPMTELLKKEKKFQWSAACEGSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1203
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1204 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1263
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1264 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1307
>ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|47900493|gb|AAT39250.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1688
Score = 191 bits (486), Expect = 3e-47
Identities = 95/164 (57%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1011 KLARPMTELLKKEKKFQWSTACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1070
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA V+ ALKIWRHYL G+ V+++HK LK
Sbjct: 1071 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVIHALKIWRHYLIGNRCEVYTDHKSLK 1130
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1131 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1174
>ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultivar-group)]
gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 191 bits (486), Expect = 3e-47
Identities = 96/164 (58%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1174 KLARPMTELLKKEKKFQWSVACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1233
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1234 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1293
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1294 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1337
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa
(japonica cultivar-group)] gi|57834090|emb|CAE04759.2|
OSJNBb0060E08.22 [Oryza sativa (japonica cultivar-group)]
Length = 1851
Score = 191 bits (486), Expect = 3e-47
Identities = 95/164 (57%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1174 KLARPMTELLKKEKKFQWSTACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1233
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA V+ ALKIWRHYL G+ V+++HK LK
Sbjct: 1234 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVIHALKIWRHYLIGNRCEVYTDHKSLK 1293
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1294 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1337
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 191 bits (486), Expect = 3e-47
Identities = 95/164 (57%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 337 KLARPMTELLKKEKKFQWSTACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 396
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA V+ ALKIWRHYL G+ V+++HK LK
Sbjct: 397 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVIHALKIWRHYLIGNRCEVYTDHKSLK 456
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 457 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 500
>gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1416
Score = 191 bits (486), Expect = 3e-47
Identities = 95/164 (57%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QG+G
Sbjct: 826 KLARPMTELLKKEKKFQWSVACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGIG 885
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 886 CVLMQERKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 945
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 946 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 989
>ref|XP_474185.1| OSJNBa0011F23.1 [Oryza sativa (japonica cultivar-group)]
gi|32489382|emb|CAE04228.1| OSJNBa0011F23.1 [Oryza sativa
(japonica cultivar-group)]
Length = 1787
Score = 191 bits (485), Expect = 3e-47
Identities = 103/196 (52%), Positives = 130/196 (65%), Gaps = 10/196 (5%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + + F SFQEMKKRLT APVLTLP ++ +E++C+AS QG+G
Sbjct: 1174 KLARPMSELLKKGKKFQWSAACEHSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGVG 1233
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1234 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1293
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA-IHVSSLM-------- 185
Y+F +LNM QR W+ IEDYD + YHPGKANVVADALS +A +V+ +
Sbjct: 1294 YIFTQTELNMRQRRWLELIEDYDLGIHYHPGKANVVADALSRKAYCNVAQIRPDQDRLCR 1353
Query: 186 -VKKLELIETFRDLSL 200
++KL L RDL L
Sbjct: 1354 ELEKLRLTMELRDLIL 1369
>ref|XP_474078.1| OSJNBa0063C18.15 [Oryza sativa (japonica cultivar-group)]
gi|38347324|emb|CAE05974.2| OSJNBa0063C18.15 [Oryza
sativa (japonica cultivar-group)]
gi|38344877|emb|CAE01541.2| OSJNBa0033G05.1 [Oryza sativa
(japonica cultivar-group)]
Length = 1764
Score = 191 bits (485), Expect = 3e-47
Identities = 94/161 (58%), Positives = 117/161 (72%)
Query: 18 RTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVL 77
R + + +E F SFQEMKKRLT APVLTLP ++ ++++C+AS QGLGCVL
Sbjct: 1134 RPMTELLKKEKKFQWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFKIFCDASRQGLGCVL 1193
Query: 78 MQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLF 137
MQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LKY+F
Sbjct: 1194 MQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIF 1253
Query: 138 D*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
+LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1254 TQTELNMRQRRWLELIKDYDLRIHYHPGKANVVADALSRKA 1294
>ref|XP_470020.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|30103020|gb|AAP21433.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1382
Score = 191 bits (485), Expect = 3e-47
Identities = 95/164 (57%), Positives = 117/164 (70%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 731 KLARPMTELLKKERKFQWSAACEDSFQEMKKRLTTAPVLTLPDIQKDFEIFCDASRQGLG 790
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA V+ ALKIWRHYL G V+++HK LK
Sbjct: 791 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVIHALKIWRHYLIGKRCEVYTDHKSLK 850
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 851 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 894
>gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50931465|ref|XP_475260.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46391139|gb|AAS90666.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1649
Score = 191 bits (484), Expect = 4e-47
Identities = 94/164 (57%), Positives = 118/164 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQE+KKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 971 KLARPMTELLKKEKKFQWSAACEDSFQELKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1030
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ ++ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1031 CVLMQEQKVVAYASRQLRPHEANYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1090
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1091 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1134
>gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum]
Length = 1622
Score = 191 bits (484), Expect = 4e-47
Identities = 90/152 (59%), Positives = 115/152 (75%)
Query: 39 SFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVLMQHREAMAYASSQLKLHERNY 98
SF +K+ LT AP+LTLP+E E + VYC+AS GLGCVLMQ +AYAS QLK+HERNY
Sbjct: 1084 SFLRLKELLTTAPILTLPVEGEGFTVYCDASGVGLGCVLMQQDRVIAYASRQLKIHERNY 1143
Query: 99 LTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLFD*KDLNMGQRCWMNFIEDYDF 158
THDLELA VVFALKIWRHYLYG ++++H+ L+Y+ +DLN QR W+ ++DYD
Sbjct: 1144 PTHDLELAAVVFALKIWRHYLYGVRCEIYTDHRSLQYIMSQRDLNSRQRRWIELLKDYDL 1203
Query: 159 TLLYHPGKANVVADALSHQAIHVSSLMVKKLE 190
++LYHPGKANVVADALS +A+ + SL +E
Sbjct: 1204 SILYHPGKANVVADALSRKAVSMGSLAFLSVE 1235
>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1761
Score = 190 bits (482), Expect = 8e-47
Identities = 94/161 (58%), Positives = 115/161 (71%)
Query: 18 RTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLGCVL 77
R + + +E FH SFQEMKKRLT APVLTLP ++ +E++C+AS QGLGCVL
Sbjct: 1087 RPMTELLKKEKKFHWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLGCVL 1146
Query: 78 MQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLKYLF 137
MQ R+ +AYA QL+ HE NY THDLELA V ALKIWRHYL G+ V+++HK LKY+F
Sbjct: 1147 MQERKVVAYAFRQLRPHEVNYPTHDLELAAVFHALKIWRHYLIGNRCEVYTDHKSLKYIF 1206
Query: 138 D*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQA 178
LNM QR W+ I+DYD + YHPGKANVVADALS +A
Sbjct: 1207 TQTKLNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRKA 1247
>emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar-group)]
gi|50927889|ref|XP_473472.1| OSJNBa0065O17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 190 bits (482), Expect = 8e-47
Identities = 95/163 (58%), Positives = 117/163 (71%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1174 KLARPMTELLKKEKKFQWSVACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1233
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1234 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1293
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQ 177
Y+F +LNM QR W+ I+DYD + YHPGKANVVADALS +
Sbjct: 1294 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADALSRK 1336
>gb|AAM12303.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31433190|gb|AAP54732.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37536286|ref|NP_922445.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1658
Score = 189 bits (481), Expect = 1e-46
Identities = 94/163 (57%), Positives = 116/163 (70%)
Query: 15 KDCRTVDKTHSEESTFHMDGGMRTSFQEMKKRLTAAPVLTLPLEKEPYEVYCNAS*QGLG 74
K R + + +E F SFQEMKKRLT APVLTLP ++ +E++C+AS QGLG
Sbjct: 1134 KLARPMTELLKKEKKFEWSAACEDSFQEMKKRLTTAPVLTLPDIRKDFEIFCDASRQGLG 1193
Query: 75 CVLMQHREAMAYASSQLKLHERNYLTHDLELAVVVFALKIWRHYLYGSTFTVFSNHKGLK 134
CVLMQ R+ +AYAS QL+ HE NY THDLELA VV ALKIWRHYL G+ V+++HK LK
Sbjct: 1194 CVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLK 1253
Query: 135 YLFD*KDLNMGQRCWMNFIEDYDFTLLYHPGKANVVADALSHQ 177
Y+F +LNM QR W+ I+DYD + YHPGKANVVAD LS +
Sbjct: 1254 YIFTQTELNMRQRRWLELIKDYDLGIHYHPGKANVVADTLSRK 1296
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.353 0.155 0.544
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,847,011
Number of Sequences: 2540612
Number of extensions: 20056386
Number of successful extensions: 90832
Number of sequences better than 10.0: 1101
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 89143
Number of HSP's gapped (non-prelim): 1468
length of query: 402
length of database: 863,360,394
effective HSP length: 130
effective length of query: 272
effective length of database: 533,080,834
effective search space: 144997986848
effective search space used: 144997986848
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0111b.7