BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0110a.16
(1427 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 946 0.0
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 937 0.0
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 910 0.0
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 909 0.0
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 907 0.0
gb|AAF79879.1| T7N9.5 [Arabidopsis thaliana] 840 0.0
emb|CAA72989.1| unnamed protein product [Brassica oleracea] gi|7... 830 0.0
gb|AAU89728.1| putative retroelement pol polyprotein-like [Solan... 828 0.0
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 814 0.0
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 784 0.0
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis... 776 0.0
emb|CAB77940.1| putative polyprotein [Arabidopsis thaliana] gi|4... 742 0.0
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 686 0.0
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 678 0.0
pir||G86301 probable retroelement polyprotein [imported] - Arabi... 666 0.0
gb|AAG51258.1| Ty1/copia-element polyprotein [Arabidopsis thalia... 659 0.0
gb|AAU89779.1| gag-pol polyprotein-like [Solanum tuberosum] 641 0.0
gb|AAT40550.1| putative receptor kinase [Solanum demissum] 638 0.0
gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica ... 583 e-164
ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (jap... 521 e-146
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301701|pir||E84589 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1461
Score = 946 bits (2445), Expect = 0.0
Identities = 516/1284 (40%), Positives = 755/1284 (58%), Gaps = 90/1284 (7%)
Query: 21 SSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPL 80
+ +PFFLH +D+PGL ++S L+ Y W+ +M I+L KNKLGF++G PRP + DP
Sbjct: 62 TQSPFFLHSADHPGLSIISHRLDETTYGDWSVAMRISLDAKNKLGFVDGSLPRPLESDPN 121
Query: 81 LQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLL 140
+ W R + +V SW+LN VS I S++ A +IW+DL DRF+ N R Y L +++
Sbjct: 122 FRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRFNLTNLPRTYNLTQEIQ 181
Query: 141 NLQQESLTVTQFYTKHKAIWDELQDYLP-QRSCVCGENRVLLDYFQQEQIMHFLMSLSDS 199
+L+Q +++++++YT K +WD+L C CG+ L ++ +IM FL L++S
Sbjct: 182 DLRQGTMSLSEYYTLLKTLWDQLDSTEALDDPCTCGKAVRLYQKAEKAKIMKFLAGLNES 241
Query: 200 YNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFAAQATNSGKSGKK--- 256
Y ++ ++ LP + V+ ++ Q+ Q+ A + ++ ++S + +
Sbjct: 242 YAIVRRQIIAKKALPSLAEVYHILDQDNSQKGFFNVVAPPAAFQVSEVSHSPITSPEIMY 301
Query: 257 -----DRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSS----------AVHHVDSS 301
++ RP CS+C ++GH +RC+KKHG+PPG K KSS A +
Sbjct: 302 VQSGPNKGRPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPD 361
Query: 302 EVSGSSVPQDPPITSSQYQQLLSLLTAQLA---TSPMPSSSTSEPLQIPSPTDLKGFVFS 358
+++G + Q Q L++L ++QL SP +SS E S G +FS
Sbjct: 362 KMTGQLETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAP-SGILFS 420
Query: 359 AS----------SDFSHKTSVWILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARV 408
S S S + W++DSGA+ HV F++ + ++LP R+
Sbjct: 421 PSTYCFIGILAVSHNSLSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRI 480
Query: 409 THIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQE-NKLKTIG 467
+ +GTV + +IL NV ++P F +NL+S+S+L + + F IQ+ K T+G
Sbjct: 481 SGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLG 540
Query: 468 RGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPS 527
G LY L S P +N++ + SV WH RLGHPS
Sbjct: 541 EGKRIGNLYVLDTQS---------PAISVNAVVDVSV--------------WHKRLGHPS 577
Query: 528 YNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFH 587
++RL LS + + C VC LAKQK+L F S N+ N +F+L+H DVWGPF
Sbjct: 578 FSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFS 637
Query: 588 VPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAK 647
V T G+++FLTIVDDHSR TW +L+K KS+ AF +V+ Q+ +K VR+DNAK
Sbjct: 638 VETVEGYKYFLTIVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAK 697
Query: 648 ELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECIST 707
EL T F + +G + SC E P+QNSVVER+HQ +LNVAR+L+FQS+M L +WG+C+ T
Sbjct: 698 ELAFTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLT 757
Query: 708 ATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVL 767
A LIN P+ L NK+P +L + P Y L+ FGCLC+SST RHKF PR+ CV
Sbjct: 758 AVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVF 817
Query: 768 VGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVP 827
+GY G+KGYKL +L + HISR+V F+E +FP +++ + P+
Sbjct: 818 LGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASSQQSATTASDVFTPMD------- 870
Query: 828 PYDVPQPESVPVPSADHIPATPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYDC- 886
P+ S + I + L S ++PS ++ RR T+ P +L DY C
Sbjct: 871 ----------PLSSGNSI-TSHLPSPQISPSTQ-----ISKRRITKF---PAHLQDYHCY 911
Query: 887 -PQQTTPHPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAME 945
+ HP+S+ SY +++PS+ +Y ++ P +H+A EW A+ E+ AME
Sbjct: 912 FVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAME 971
Query: 946 ANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPV 1005
TW++ SLPPGK +G KWV+ +K H DGS++R KAR+VAKGYTQ+ G+DY +TFSPV
Sbjct: 972 RTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPV 1031
Query: 1006 AKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-DVKG----ENLTC 1060
AK+ TV++LL ++A KW L QLDI+NAFLNGDL E +YMK+P GY D+KG N+ C
Sbjct: 1032 AKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVC 1091
Query: 1061 RLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVS 1120
RLKKSIYGLKQASRQWF KFS+ L GF+ + D++LF + G F+VLLVYV+DI+++
Sbjct: 1092 RLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIA 1151
Query: 1121 GPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTD 1180
S+ + LK++FKL++LG LK+FLGLE+A ++ GISLSQR YAL LL D
Sbjct: 1152 STTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLD 1211
Query: 1181 CRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPT 1240
C+P+S+PM PN++LS + G L D YRRL+G+L+YLTI+RPDI F +NKL QF S P
Sbjct: 1212 CKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPR 1271
Query: 1241 TTHLDALHHLLRYLKTTPGQGFFF 1264
T HL A++ +L+Y+K T GQG F+
Sbjct: 1272 TAHLAAVYKVLQYIKGTVGQGLFY 1295
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301694|pir||E84535 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1454
Score = 937 bits (2422), Expect = 0.0
Identities = 509/1286 (39%), Positives = 748/1286 (57%), Gaps = 81/1286 (6%)
Query: 13 TSFRIMENSSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFP 72
TS + + +PFFLH +D+PGL ++S L+ NY W+ +M+I+L KNK GFI+G
Sbjct: 50 TSSESGDPTQSPFFLHSADHPGLNIISHRLDETNYGDWSVAMLISLDAKNKTGFIDGTLS 109
Query: 73 RPADDDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRI 132
RP + D + W R + +V SW+LN VS I S++ A +IW+DL RF+ N R
Sbjct: 110 RPLESDLNFRLWSRCNSMVKSWLLNSVSPQIYRSILRMNDASDIWRDLNSRFNVTNLPRT 169
Query: 133 YQLKKDLLNLQQESLTVTQFYTKHKAIWDELQDYLP-QRSCVCGENRVLLDYFQQEQIMH 191
Y L +++ + +Q +L+++++YT+ K +WD+L C CG+ L +Q +I+
Sbjct: 170 YNLTQEIQDFRQGTLSLSEYYTRLKTLWDQLDSTEALDEPCTCGKAMRLQQKAEQAKIVK 229
Query: 192 FLMSLSDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREI--------AARSADLNSAF 243
FL L++SY ++ ++ LP + V+ ++ Q+ Q+ A + +++ +
Sbjct: 230 FLAGLNESYAIVRRQIIAKKALPSLGEVYHILDQDNSQQSFSNVVAPPAAFQVSEITQSP 289
Query: 244 AAQATNSGKSGKKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSS---------A 294
+ T ++ RP+CS+ ++GH +RC+KKHG+PPG K K+ A
Sbjct: 290 SMDPTVCYVQNGPNKGRPICSFYNRVGHIAERCYKKHGFPPGFTPKGKAGEKLQKPKPLA 349
Query: 295 VHHVDSSEVSGSSVPQDPPITSSQYQQLLSLLTAQLATSP-----MPSSSTSEPLQI--- 346
+ +SSEV+ S ++ Q QQ +++ ++QL +P S+S S+ L I
Sbjct: 350 ANVAESSEVNTSLESMVGNLSKEQLQQFIAMFSSQLQNTPPSTYATASTSQSDNLGICFS 409
Query: 347 PSPTDLKGFVFSASSDFSHKTSVWILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKA 406
PS G + A S T W++DSGA+ HV S F S + ++LP
Sbjct: 410 PSTYSFIGILTVARHTLSSAT--WVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTV 467
Query: 407 RVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQEN-KLKT 465
+++ +GT+KL + ++L NV ++P F +NL+S+S+L ++ + F + IQ+ K +
Sbjct: 468 KISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRM 527
Query: 466 IGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGH 525
+G+G LY L ++ + +S +WH RLGH
Sbjct: 528 LGQGRRVANLYLLDVGDQSISVNAVVDIS-----------------------MWHRRLGH 564
Query: 526 PSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGP 585
S RL +S ++ + + C VC LAKQ++L F + N FDL+H DVWGP
Sbjct: 565 ASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGP 624
Query: 586 FHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDN 645
F V T G+++FLTIVDDHSR TW +L+K KSE AF + V+ Q+ +K VR+DN
Sbjct: 625 FSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDN 684
Query: 646 AKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECI 705
A EL+ T+F ++G + SC E P+QNSVVER+HQ +LNVAR+L+FQS +PL WG+C+
Sbjct: 685 APELKFTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCV 744
Query: 706 STATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPC 765
TA LIN P+ L NK+P +L P Y+ LR FGCLC+SST P RHKF PR+ C
Sbjct: 745 LTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRAC 804
Query: 766 VLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLS 825
+ +GY GYKGYKL +L + T ISR+V F+E +FP P S P+ V
Sbjct: 805 LFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAK-NPGSESSLKLFTPMVPVSSG 863
Query: 826 VPPYDVPQPESVPVPSADHIPATPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYD 885
+ P S+P +D +PP S RVR PP +L DY
Sbjct: 864 IISDTTHSPSSLPSQISD-------------------LPPQI--SSQRVRKPPAHLNDYH 902
Query: 886 CPQQTTPH--PLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAA 943
C + H P+S+ SY K++PS+ Y + PT + +A EW +A+ E+ A
Sbjct: 903 CNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGA 962
Query: 944 MEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFS 1003
ME TW++ +LP GK +G KWV+ LK DG+++R+KARLVAKGYTQ+ G+DY DTFS
Sbjct: 963 MEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFS 1022
Query: 1004 PVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-DVKG----ENL 1058
PVAK+TT+++LL ++A KW L QLD++NAFLNG+L EE++MKIP+GY + KG N+
Sbjct: 1023 PVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNV 1082
Query: 1059 TCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDII 1118
RLK+SIYGLKQASRQWF KFSS L GF+ ++ D++LF K FV++LVYV+DI+
Sbjct: 1083 VLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIV 1142
Query: 1119 VSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGF 1178
++ + + + L FKL+DLG LK+FLGLE+A + GIS+ QR YAL LL TG
Sbjct: 1143 IASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALELLQSTGM 1202
Query: 1179 TDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSK 1238
C+P S+PM PNLK+ D G + D QYRR++G+L+YLTI+RPDI F +NKL QF S
Sbjct: 1203 LACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSA 1262
Query: 1239 PTTTHLDALHHLLRYLKTTPGQGFFF 1264
P TTHL A + +L+Y+K T GQG F+
Sbjct: 1263 PRTTHLTAAYRVLQYIKGTVGQGLFY 1288
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana] gi|7486705|pir||T01879
hypothetical protein F8M12.17 - Arabidopsis thaliana
Length = 1633
Score = 910 bits (2352), Expect = 0.0
Identities = 532/1327 (40%), Positives = 769/1327 (57%), Gaps = 165/1327 (12%)
Query: 23 NPFFLHHSDNPGLILVSQPLN-GENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLL 81
NP LH SD+ GL+LVS+ LN +++SW RS+ +AL+V+NKLGFI+G +P D
Sbjct: 33 NPHHLHTSDHAGLVLVSERLNTASDFHSWRRSIWMALNVRNKLGFIDGTIVKPPLDHRDY 92
Query: 82 QSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLN 141
+W R + V +W++N VSK I S++ +A+ IW+++ RF Q + R+Y +++ L
Sbjct: 93 GAWSRCNDTVSTWLMNSVSKKIGQSLLFIPTAEGIWKNMLSRFKQDDAPRVYDIEQRLSK 152
Query: 142 LQQESLTVTQFYTKHKAIWDELQDYLPQRSCVCG----ENRVLLDYFQQEQ-IMHFLMSL 196
++Q S+ ++ +YT+ + +W+E ++Y+ C CG + V + QQ + FLM L
Sbjct: 153 IEQGSMDISAYYTELQTLWEEHKNYVDLPVCTCGRCECDAAVKWERLQQRSHVTKFLMGL 212
Query: 197 SDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFAAQATNSGKSGKK 256
++SY Q + H+L++ P+ + F++V Q+E+Q+ I + K +
Sbjct: 213 NESYEQTRRHILMLKPIRTIEEAFNIVTQDERQKAIRP---------------TPKVDNQ 257
Query: 257 DRDR-PLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPIT 315
D+ + PLC+ CGK+GH+V +C+K GYPPG +K +S ++ Q P
Sbjct: 258 DQLKLPLCTNCGKVGHTVQKCYKIIGYPPG--YKAATSYRQPQIQTQPRMQMPQQSQPRM 315
Query: 316 SSQYQQLLSLLTAQL-----------ATSP---------MPSSSTSEPLQIPSPTDLK-- 353
Q L+S AQ+ +SP M +STS + PS T LK
Sbjct: 316 QQPIQHLISQFNAQVRVQEPAATSIYTSSPTATITEHGLMAQTSTSGTIPFPS-TSLKYE 374
Query: 354 ----GFVFSASSDFSHKTS--VWILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKAR 407
F S + S WI+DSGAS HVC L+ F V T++LP+ T+
Sbjct: 375 NNNLTFQNHTLSSLQNVLSSDAWIIDSGASSHVCSDLTMFRELIHVSGVTVTLPNGTRVA 434
Query: 408 VTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKTIG 467
+TH GT+ + ++LILHNV VP F NL+SV L + + IG
Sbjct: 435 ITHTGTICITSTLILHNVLLVPDFKFNLISVCCL-----------------ELTRGLMIG 477
Query: 468 RGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPS 527
RG T+N LY L +++ + +L A HPS
Sbjct: 478 RGKTYNNLYILETQ-----------------------------RTSFSPSLPAATSRHPS 508
Query: 528 YNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFH 587
L L S+I S + C + PLAKQKRL +VS N+ A+ FDLIH D+WGPF
Sbjct: 509 LPALQKLVSSIPSLKSVSSTASHCRISPLAKQKRLAYVSHNNLASSPFDLIHLDIWGPFS 568
Query: 588 VPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAK 647
+ + G R+FLT+VDD +R TW +++K+KSE F K++ TQ+ IK +R+DN K
Sbjct: 569 IESVDGFRYFLTLVDDCTRTTWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVK 628
Query: 648 ELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECIST 707
EL T F+++QG +HQFSC PQQNSVVER+HQ LLN+ARSLLFQS++PL +W +C+ T
Sbjct: 629 ELAFTKFVKEQGMIHQFSCAYTPQQNSVVERKHQHLLNIARSLLFQSNVPLQYWSDCVLT 688
Query: 708 ATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVL 767
A +LIN +P+P L NK+P LL ++ P Y L+ CLC++ST R+KFSPRA PCV
Sbjct: 689 AAYLINRLPSPLLDNKTPFELLLKKIPDYTLLK--SCLCYASTNVHDRNKFSPRARPCVF 746
Query: 768 VGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPF---LVPLP*VGL 824
+GY GYKGYK+ +L + + I+R+VVF+E+ FPF+ ++ S D F ++PLP
Sbjct: 747 LGYPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLP---- 802
Query: 825 SVPPYDVPQPESVPV-----------------PSADHIPATPLVSEIVAPSPDAI---VP 864
P + V ES+P+ SA IP PL S + + DA+
Sbjct: 803 -APLHFV---ESMPLDDDLRADDNNASTSNSASSASSIP--PLPSTVNTQNTDALDIDTN 856
Query: 865 PLAVRRSTRVRHPPGYLADYDC-------------------------PQQ-TTPHPLSTY 898
+ + R R P YL++Y C P++ TTP+P+ST
Sbjct: 857 SVPIARPKRNAKAPAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTA 916
Query: 899 YSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPG 958
SYDKLTP + Y EP F QA++ +W +A EL A+E N+TW V SL G
Sbjct: 917 ISYDKLTPLFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEG 976
Query: 959 KHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALA 1018
K+ +G KWV+ +K +PDGSI+R+KARLVA+G+TQQ GIDYM+TFSPVAK +V++LL LA
Sbjct: 977 KNVVGCKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLA 1036
Query: 1019 AMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-DVKGENL----TCRLKKSIYGLKQAS 1073
A W L Q+D++NAFL+G+L EE+YM +PQGY G +L CRL KS+YGLKQAS
Sbjct: 1037 AATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQAS 1096
Query: 1074 RQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQL 1133
RQW+ + SSV F S D ++F K S + +V+LVYV+D++++ +++ ++++K+L
Sbjct: 1097 RQWYKRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKEL 1156
Query: 1134 LKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLK 1193
L+S FK+KDLG +FFLGLEIA S+ GIS+ QR YA +LL D G + C+P+S+PMDPNL
Sbjct: 1157 LRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLH 1216
Query: 1194 LSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRY 1253
L+ + G L +++ YR L+GRLLYL I+RPDI F ++ LSQFLS PT H+ A H +LRY
Sbjct: 1217 LTKEMGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRY 1276
Query: 1254 LKTTPGQ 1260
LK PGQ
Sbjct: 1277 LKGNPGQ 1283
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626). [Arabidopsis thaliana]
gi|25301690|pir||G96722 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana
Length = 1315
Score = 909 bits (2348), Expect = 0.0
Identities = 511/1238 (41%), Positives = 729/1238 (58%), Gaps = 116/1238 (9%)
Query: 54 MMIALSVKNKLGFINGDFPRPADDDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSA 113
M ++ KNKLGF++G P+P DDDP + W R + +V SW+LN VSK+I +S++ +A
Sbjct: 1 MTTSIEAKNKLGFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTA 60
Query: 114 KEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYTKHKAIWDELQDYLPQRSCV 173
IW+DL RFH+ + R+Y+L++ + +L+Q +L ++ ++T+ + +W+EL V
Sbjct: 61 AAIWKDLYTRFHKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPRTV 120
Query: 174 CGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQRE-- 231
LL + +++ FLM L+D Y+ ++S +L+ LP ++ VF+M+ Q+E QR
Sbjct: 121 ----EDLLIERETNRVIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQDETQRSAR 176
Query: 232 IAARSADLNSAFAA--QATNSGKSGK--KDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLN 287
I+ +S F Q++ S +G + ++RP+CSYC + GH D C+KKHGYP
Sbjct: 177 ISTTPGMTSSVFPVSNQSSQSALNGDTYQKKERPVCSYCSRPGHVEDTCYKKHGYPTSFK 236
Query: 288 FKNKS-----SAVHHVDSSEVSGSSVPQDPPITSSQYQQLLSLLTAQLATSPMPSSSTSE 342
K K SA + S EV ++ +T+SQ QQL+S L+++L P S+ +
Sbjct: 237 SKQKFVKPSISANAAIGSEEVVNNTSVSTGDLTTSQIQQLVSFLSSKL----QPPSTPVQ 292
Query: 343 PLQIPSPTDLKGFVFSASSDFSHKTSVWILDSGASCHVCFHLSSFESYHSVRSHTISLPD 402
P ++ S S SSD S ++V C +
Sbjct: 293 P-EVHS--------ISVSSDPSSSSTV--------CPIS--------------------- 314
Query: 403 NTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQE-N 461
G+V LG LIL++V ++P F NLLSVS+L ++ I F + V+Q+
Sbjct: 315 ---------GSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDAT 365
Query: 462 KLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHA 521
+ +G G LY + L+SL + S S + LWH
Sbjct: 366 RELMVGMGKQVANLYIVD----------------LDSLSHPGTDSSITVASVTSHDLWHK 409
Query: 522 RLGHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCD 581
RLGHPS +L +SS + + + C VC ++KQK LPFVS N+ ++ FDLIH D
Sbjct: 410 RLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHID 469
Query: 582 VWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMV 641
WGPF V TH G+R+FLTIVDD+SR TW +L+++KS+ I F MV+ QF IK V
Sbjct: 470 TWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGV 529
Query: 642 RTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFW 701
R+DNA EL T F +G + SC E PQQNSVVER+HQ +LNVARSL FQSH+P+ +W
Sbjct: 530 RSDNAPELNFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYW 589
Query: 702 GECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPR 761
G+CI TA +LIN +P P L +K P +L + P+YDH++VFGCLC++ST P RHKFSPR
Sbjct: 590 GDCILTAVYLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPR 649
Query: 762 AVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP* 821
A C +GY G+KGYKL +L T + +SR VVF+E +FPF + Q+ F
Sbjct: 650 AKACAFIGYPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFF------ 703
Query: 822 VGLSVPPYDVPQPESVPVP-----SADHI-PATPLVSEIVAPS--PDAIVPPLAVRRSTR 873
P+ P P S+DH+ P+ S + PS P VP +V+ S R
Sbjct: 704 ------------PDLNPTPPMQRQSSDHVNPSDSSSSVEILPSANPTNNVPEPSVQTSHR 751
Query: 874 VRHPPGYLADYDCPQ--QTTPHPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYP 931
P YL DY C +TPH + + SYD++ Y + + EP+ + +A +
Sbjct: 752 KAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQ 811
Query: 932 EWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYT 991
W+ AM E +E TW+V SLP K IG +W++K+K + DGS++R+KARLVA+GYT
Sbjct: 812 VWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYT 871
Query: 992 QQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY 1051
Q+ GIDY +TFSPVAK+ +V++LL +AA +K L QLDI+NAFLNGDL EE+YM++PQGY
Sbjct: 872 QKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGY 931
Query: 1052 -----DVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDT 1106
D N CRLKKS+YGLKQASRQW+ KFSS L GF SY D++ F K S
Sbjct: 932 ASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGI 991
Query: 1107 FVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQR 1166
F+ +LVY++DII++ N +D +K +KS FKL+DLG+LK+FLGLEI S GI +SQR
Sbjct: 992 FLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQR 1051
Query: 1167 AYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIA 1226
YAL LL +TG C+P+S+PMDP++ + D+G + + YRRLIGRL+YL I+RPDI
Sbjct: 1052 KYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDIT 1111
Query: 1227 FTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
F +NKL+QF P HL A++ +L+Y+K T GQG F+
Sbjct: 1112 FAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFY 1149
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana] gi|7444421|pir||A71444 probable
LTR retrotransposon - Arabidopsis thaliana
Length = 1433
Score = 907 bits (2344), Expect = 0.0
Identities = 515/1299 (39%), Positives = 740/1299 (56%), Gaps = 134/1299 (10%)
Query: 12 NTSFRIMENSSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDF 71
+ S +N+ +P+FLH SD+PGL +VS L+G NYN+W+ +M ++L KNKL F++G
Sbjct: 55 SASIESYDNAHSPYFLHSSDHPGLNIVSHILDGTNYNNWSIAMRMSLDAKNKLSFVDGSL 114
Query: 72 PRPADDDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTR 131
PRP D + + W R + +V +W+LN V+ E+W DL RF N R
Sbjct: 115 PRPDVSDRMFKIWSRCNSMVKTWLLNVVT--------------EMWNDLFSRFRVSNLPR 160
Query: 132 IYQLKKDLLNLQQESLTVTQFYTKHKAIWDELQD--YLPQRSCVCGENRVLLDYFQQEQI 189
YQL++ + L+Q +L ++ +YTK K +W++L + L R C C + LL+ + +I
Sbjct: 161 KYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLTVRKCNCEHVKELLEEAETSRI 220
Query: 190 MHFLMSLSDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARS-ADLNSAFAAQAT 248
+ FLM L+D++ I+ +L M P P + +++M+ Q+E QR + + ++ +AF QA+
Sbjct: 221 IQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNMLDQDESQRLVGNPTLSNPTAAFQVQAS 280
Query: 249 ----NSGKSGKKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVS 304
+ + +P CSYC KLGH VD+C+KKHGYPPG + K + + +
Sbjct: 281 PIIDSQVNMAQGSYKKPKCSYCNKLGHLVDKCYKKHGYPPGSKW-TKGQTIGSTNLASTQ 339
Query: 305 GSSVPQDP--------PITSSQYQQLLSLLTAQL---ATSPMP---SSSTSEPLQIPSPT 350
V + P ++ Q Q ++S L+ +L + SPMP S+S S +P +
Sbjct: 340 LQPVNETPNEKTDSYEEFSTDQIQTMISYLSTKLHIASASPMPTTSSASISASPSVPMIS 399
Query: 351 DLKGFVFSASSDFSHKTSV-------------WILDSGASCHVCFHLSSFESYHSVRSHT 397
+ G S S+ + + W++DSGA+ HV + + ++ S+ +
Sbjct: 400 QISGTFLSLFSNAYYDMLISSVSQEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSLENTF 459
Query: 398 ISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFV 457
+ LP++ ++ IG ++L +++ LHNV Y+P F NL+S
Sbjct: 460 VRLPNDCTVKIAGIGFIQLSDAISLHNVLYIPEFKFNLIS-------------------- 499
Query: 458 IQENKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAA 517
+ K IGRG LY L + NN T L S+C + S C+ +
Sbjct: 500 -ELTKELMIGRGSQVGNLYVLDFNENN----HTVSLKGTTSMCPEF---SVCSSVVVDSV 551
Query: 518 LWHARLGHPSYNRLSLLSSTIHCKIPSSINEN-----VCPVCPLAKQKRLPFVSENHFAN 572
WH RLGHP+Y+++ LLS ++ K+ E+ VC VC L+KQK L F S + +
Sbjct: 552 TWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCS 611
Query: 573 HSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQT 632
+FDL+H D WGPF VPT+ TW +L+K+KS+ AF MV T
Sbjct: 612 AAFDLVHIDTWGPFSVPTNDA--------------TWIYLLKNKSDVLHVFPAFINMVHT 657
Query: 633 QFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLF 692
Q+ +K VR+DNA EL+ T G + SC E P+QNSVVER+HQ +LNVAR+LLF
Sbjct: 658 QYQTKLKSVRSDNAHELKFTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLF 717
Query: 693 QSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLP 752
QS++PL FWG+C+ TA LIN +PTP L+NKSP L P+Y+ L+ FGCLC+SST P
Sbjct: 718 QSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSP 777
Query: 753 STRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQ 812
RHKF PRA CV +GY GYKGYKL ++ T ISR V+F+E IFPF ++ +
Sbjct: 778 KQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFISSTIKDDIK 837
Query: 813 DPFLVPLP*VGLSVPPYDVPQPESVPVPSADHIPATPLVSEIVAPSPDAIVP--PLAVRR 870
D F P + D+P ++ + + H + S A+VP PL
Sbjct: 838 DFF----PLLQFPARTDDLPLEQTSIIDTHPHQDVS---------SSKALVPFDPL---- 880
Query: 871 STRVRHPPGYLADYDCPQQTTPHPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQY 930
S R + PP +L D+ C Y+ T + + + + P + +A +
Sbjct: 881 SKRQKKPPKHLQDFHC--------------YNNTTEPFHAFINNITNAVIPQRYSEAKDF 926
Query: 931 PEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGY 990
W AM+ E+ AM TW VVSLPP K IG KWV+ +K + DGSI+R+KARLVAKGY
Sbjct: 927 KAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGY 986
Query: 991 TQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQG 1050
TQ+ G+DY +TFSPVAK+T+VRM+L LAA KW + QLDI+NAFLNGDL EE+YMKIP G
Sbjct: 987 TQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPG 1046
Query: 1051 Y-DVKGENL----TCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGD 1105
Y D+ GE L CRL KSIYGLKQASRQW+ K S+ L GFQ S D++LF K +
Sbjct: 1047 YADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANG 1106
Query: 1106 TFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQ 1165
+ +LVYV+DI++ + + LKS FKL+DLG K+FLG+EIA S GIS+ Q
Sbjct: 1107 VLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQ 1166
Query: 1166 RAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDI 1225
R Y L LL TGF +P+S+P+DP++KL+ + G L DS+ YR+L+G+L+YL I+RPDI
Sbjct: 1167 RKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDI 1226
Query: 1226 AFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
A+ +N L QF PT+ HL A+H +LRYLK T GQG F+
Sbjct: 1227 AYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFY 1265
>gb|AAF79879.1| T7N9.5 [Arabidopsis thaliana]
Length = 1436
Score = 840 bits (2170), Expect = 0.0
Identities = 492/1316 (37%), Positives = 730/1316 (55%), Gaps = 160/1316 (12%)
Query: 15 FRIMENSSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRP 74
F++ ++ NP LH SD+PGL +V+ L+G NYNSW+ +M I+L KNKLGF++G RP
Sbjct: 48 FKVSDSGENPLLLHSSDHPGLSIVAHILDGSNYNSWSIAMRISLDAKNKLGFVDGSLLRP 107
Query: 75 ADDDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQ 134
+ DD + W R + +V N R YQ
Sbjct: 108 SVDDSTFRIWSRCNSMVN-----------------------------------NLPRRYQ 132
Query: 135 LKKDLLNLQQESLTVTQFYTKHKAIWDELQDYLPQ--RSCVCGENRVLLDYFQQEQIMHF 192
L++ ++ LQQ L ++ ++TK K +W++L + + + C C + + LL+ + +++ F
Sbjct: 133 LEQAVMTLQQGKLDLSTYFTKKKTLWEQLANTKSRSVKKCDCDQVKELLEEAETSRVIQF 192
Query: 193 LMSLSDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREI--AARSADLNSAFAAQAT-- 248
LM LSD +N I+S + M P P +N +++M+ Q+E QR + AA+S S A Q
Sbjct: 193 LMGLSDDFNTIRSQIFNMKPRPGLNEIYNMLDQDESQRLVGFAAKSVPSPSPAAFQTQGV 252
Query: 249 ----NSGKSGKKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVS 304
N+ + + +P C++C ++GH+VD+C+K HGYPPG +++ V + +
Sbjct: 253 LNDQNTILLAQGNFKKPKCTHCNRIGHTVDKCYKVHGYPPGHPRAKENTYVGSTNLASTD 312
Query: 305 GSSVPQDPPITSSQY--------QQLLSLLTAQL---------------ATSPMPS---- 337
P ++++ + QQL+S L+ +L +++P+PS
Sbjct: 313 QIETQAPPTMSATGHETMSNDHIQQLISYLSTKLQSPSITSCFDKAIASSSNPVPSISQI 372
Query: 338 -----SSTSEPLQIPSPTDLKGFVFSA--SSDFSHKTS-----------VWILDSGASCH 379
+S+S P +PS + + G FS S+ + TS W++DSGAS H
Sbjct: 373 TDKAIASSSNP--VPSISQITGTFFSLYDSTYYEMLTSSIPIETELSLRAWVIDSGASHH 430
Query: 380 VCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVS 439
V + + +Y ++ + LP+ ++ G ++L ++L LHNV ++P F NLLSVS
Sbjct: 431 VTHERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLTDALSLHNVLFIPEFKFNLLSVS 490
Query: 440 ALLENPKYSIHFFHKTFVIQE-NKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNS 498
L + + + F +IQ K +G+G LY L+ + V +S SV +S
Sbjct: 491 VLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLVDVSSFPGKSVCSS 550
Query: 499 LCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHC-KIPSSINENVCPVCPLA 557
+ N+S +WH RLGHPS+ ++ LS + K + + + C VC L+
Sbjct: 551 VKNES-------------EMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLS 597
Query: 558 KQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKS 617
KQK LPF S NH +F+L+H D WGPF VPT +R+FLTIVDD SR TW +L+K KS
Sbjct: 598 KQKHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKS 657
Query: 618 EAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVE 677
+ +F KMV+TQ+ + VR+DNA EL+ K+G C E P+QN VVE
Sbjct: 658 DVLTVFPSFLKMVETQYHTKVCSVRSDNAHELKFNELFAKEGIKADHPCPETPEQNFVVE 717
Query: 678 RRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYD 737
R+HQ LLNVAR+L+FQS +PL +WG+C+ TA LIN + +P ++N++P L + P Y
Sbjct: 718 RKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLTKGKPDYS 777
Query: 738 HLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNE 797
L+ FGCLC+ ST P +R KF PRA C+ +GY GYKGYKL ++ T + ISR V+F E
Sbjct: 778 SLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYE 837
Query: 798 SIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYD--VPQPESVPVPSADHIPATPLVSEIV 855
IFPF ++ ++D F P + L P D +P +S +H ++ S I
Sbjct: 838 DIFPFASSNITDAAKDFF----PHIYLPAPNNDEHLPLVQSSSDAPHNHDESS---SMIF 890
Query: 856 APSPDAIVPPLAVRRSTRVRHPPGYLADYDC------PQQTTPHPLSTYYSYDKLTPSYK 909
PS +STR R P +L D+ C +T+P+PL+ Y SY L+ +
Sbjct: 891 VPSEP---------KSTRQRKLPSHLQDFHCYNNTPTTTKTSPYPLTNYISYSYLSEPFG 941
Query: 910 VYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYK 969
+ + + P + +A W AM E++A TW + LP GK +G KW+
Sbjct: 942 AFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIIT 1001
Query: 970 LKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLD 1029
+K DGSI+RHKARLVAKGYTQQ GID+ +TFSPVAK+ TV++LL+LA KW L QLD
Sbjct: 1002 IKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLHQLD 1061
Query: 1030 INNAFLNGDLFEEVYMKIPQGY-DVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHG 1088
I+NA LNGDL EE+YMK+P GY +++G+ ++ K HG
Sbjct: 1062 ISNALLNGDLEEEIYMKLPPGYSEIQGQEVSPNAK----------------------CHG 1099
Query: 1089 FQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKF 1148
D++LF K F+V+LVYV+DI+++ + L S F+L+DLG+ KF
Sbjct: 1100 ------DHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKF 1153
Query: 1149 FLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQY 1208
FLG+EIA +A GISL QR Y L LL + F+DC+P+S+PM+PN KLS DTG L D QY
Sbjct: 1154 FLGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQY 1213
Query: 1209 RRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFF 1264
RR++G+L YL ++RPDI F ++KL+Q+ S PT HL ALH +LRYLK T GQG F+
Sbjct: 1214 RRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFY 1269
>emb|CAA72989.1| unnamed protein product [Brassica oleracea] gi|7488558|pir||T14517
hypothetical protein 1 - wild cabbage transposon Melmoth
Length = 1131
Score = 830 bits (2143), Expect = 0.0
Identities = 464/1179 (39%), Positives = 669/1179 (56%), Gaps = 104/1179 (8%)
Query: 18 MENSSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADD 77
M+ + +P F+H++D+PGL L+S L+G NY+ WN +M IAL KNK+GF++G RP
Sbjct: 8 MDPNQSPLFMHNADHPGLQLISLKLDGSNYDDWNAAMKIALDAKNKIGFVDGTLTRPDTS 67
Query: 78 DPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKK 137
DP + W R + +V SW+LN VS I S++ A +IW+DL RFH N R + L +
Sbjct: 68 DPTFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDAADIWRDLHGRFHMTNLPRTFNLTQ 127
Query: 138 DLLNLQQESLTVTQFYTKHKAIWDELQDY-LPQRSCVCGENRVLLDYFQQEQIMHFLMSL 196
++ +L+Q S++++ +YT K +WD L+ P CVCG L + +I+ FL L
Sbjct: 128 EIQDLKQGSMSLSDYYTTLKTLWDNLESVDEPDTPCVCGNAEKLQKKVDRAKIVKFLAGL 187
Query: 197 SDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAF---------AAQA 247
+DSY I+ +++ LP + V++++ Q++ Q+ + +A +AF A+A
Sbjct: 188 NDSYAIIRRQIIMKKVLPSLVEVYNILDQDDSQKGFS--TAITPAAFNVSENVPPPMAEA 245
Query: 248 TNSGKSGKKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKS-SAVHHVDSSEVSGS 306
++ RP+CS+C ++GH +RC+KKHG+PPG K KS S+ + + +
Sbjct: 246 GICYVQTGPNKGRPICSFCNRVGHIAERCYKKHGFPPGFVSKYKSQSSGDRLQKPKQVAA 305
Query: 307 SVPQDPPITSS---------------QYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTD 351
V PP + Q QQ ++L ++QL M S+ S Q P D
Sbjct: 306 QVSFSPPNSGQSPMTMDHLVGNHSKEQLQQFIALFSSQLPNVTMGSNEASSSKQ---PMD 362
Query: 352 LKGFVFSAS----------SDFSHKTSVWILDSGASCHVCFHLSSFESYHSVRSHTISLP 401
G F+ + S + WI+DSGA+ HVC S + S + ++LP
Sbjct: 363 NSGISFNPTTLVFIGLLTVSRHTLANETWIIDSGATHHVCHDRSMYTSIDITTTSNVNLP 422
Query: 402 DNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQE- 460
+ +++ +G V+L + LHNV Y+P F +NLLS+S+L + + F + IQ+
Sbjct: 423 NGMIVKISGVGIVQLNEHITLHNVLYIPEFRLNLLSISSLTSDIGSQVIFDVSSCAIQDP 482
Query: 461 NKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWH 520
K TIG+G LY L S SP+ + + +LWH
Sbjct: 483 TKGWTIGQGRRVANLYVLDVKS--------SPMKI---------------NAVVDISLWH 519
Query: 521 ARLGHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHC 580
RLGHPSY RL +S + + + C VC LAKQK+L + S+NH SF L+H
Sbjct: 520 KRLGHPSYTRLDKISEALGTTKHKNKGDAHCHVCHLAKQKKLSYSSQNHICTASFQLLHV 579
Query: 581 DVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKM 640
DVWGPF V T G+++FLTIVDDHSR TW +L++ KS+ F ++TQ+ IK
Sbjct: 580 DVWGPFSVETLEGYKYFLTIVDDHSRATWIYLLQSKSDVLHIFPTFVNQIETQYNTKIKS 639
Query: 641 VRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVF 700
VR DNA EL T +++G + SC E +QNSV+ER+HQ LLNVAR+L+FQS +PL +
Sbjct: 640 VRRDNAPELSFTELFKEKGIVSYHSCPETLEQNSVLERKHQHLLNVARALMFQSQVPLQY 699
Query: 701 WGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSP 760
WG+C+ TA LIN P+P L NKSP +L + P YD LR FGCLC+ ST P RHKF P
Sbjct: 700 WGDCVLTAAFLINRTPSPLLANKSPYEVLMGKAPQYDQLRTFGCLCYGSTSPKQRHKFMP 759
Query: 761 RAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP 820
R+ CV +GY GYKGYKL +L + +ISR+V F+E IFP + S F
Sbjct: 760 RSRACVFLGYPSGYKGYKLLDLESNKIYISRNVTFHEDIFPMAKHQKMDESSLHFF---- 815
Query: 821 *VGLSVPPYDVPQPESVPVPSADHIPATPLVSEIVAPSPDAIVPP---LAVRRSTRVRHP 877
P V VPS APSP+ P L+ + S R R
Sbjct: 816 -------------PPKVTVPS--------------APSPNISSSPFSTLSPQISKRQRTV 848
Query: 878 PGYLADYDC-PQQTTPHPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQA 936
P +L D+ C + +P+S+ SY +++ + Y + + P + + Q EW ++
Sbjct: 849 PAHLKDFHCYSVHDSAYPISSTLSYSQISSHHLAYINSITNIPIPQSYAEVRQSKEWTES 908
Query: 937 MRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGI 996
EL AME N TWDVV LP GK IG +WV+ LK + DG+++R K+RLV KGYTQ+ G+
Sbjct: 909 ADKELDAMEENDTWDVVPLPKGKKAIGCRWVHTLKFNADGTLERRKSRLVGKGYTQKEGL 968
Query: 997 DYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-DVKG 1055
DY++TFSPVAK+ TV++LL + A KW L QLDI+NAFLNG+L EE+YMK+P+GY + KG
Sbjct: 969 DYIETFSPVAKMATVKLLLKVGASKKWFLHQLDISNAFLNGELDEEIYMKLPEGYAERKG 1028
Query: 1056 E---NLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLV 1112
+ N C+LKKSIYGLKQASRQWF KFS+ L Q GFQ ++ D++LF + + + FV +LV
Sbjct: 1029 DLPPNAVCKLKKSIYGLKQASRQWFKKFSTSLFQLGFQKAHGDHTLFVRQTENDFVAVLV 1088
Query: 1113 YVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLG 1151
YV+DI+++ + +K LKS FKL+DLG LK+F G
Sbjct: 1089 YVDDIVIASTDDAVAVKLKSDLKSFFKLRDLGSLKYFFG 1127
>gb|AAU89728.1| putative retroelement pol polyprotein-like [Solanum tuberosum]
Length = 1476
Score = 828 bits (2138), Expect = 0.0
Identities = 494/1346 (36%), Positives = 724/1346 (53%), Gaps = 175/1346 (13%)
Query: 34 GLILVSQPLNG-ENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPL-LQSWIRNDHVV 91
G + + L G ENY+ W+R+M + L KNK+GFI+G R + L + W R + +V
Sbjct: 13 GAVQIGIQLTGMENYSLWSRAMQLTLLTKNKMGFIDGSLRRDDFKEELEKKQWDRCNAMV 72
Query: 92 MSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQ 151
+SW++N VS D+VS ++ +A +W DL++RF + N +RI+ L K ++ Q V+
Sbjct: 73 LSWLMNNVSTDLVSGILFRSNATLVWNDLKERFDKVNMSRIFHLHKAIVTHVQGVSPVSV 132
Query: 152 FYTKHKAIWDELQDYLPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMN 211
+Y+K K +WDE LP SC C ++ D +++++ FLM L+D+Y Q +S +L+MN
Sbjct: 133 YYSKLKDLWDEYDSILPPPSCDCEKSVDYTDSMLRQKLLQFLMGLNDNYGQARSQILMMN 192
Query: 212 PLPPMNRVFSMVLQEEKQREIAARSADLN-----------SAFAAQATNSGKSGKKDRDR 260
P P +N+ ++M++Q+E QR ++ ++ S F +Q + +G + +
Sbjct: 193 PSPSVNQCYAMIVQDESQRSLSGSGQTIDPTALFTHRPGGSGFGSQGSQGSGNGSSNGNS 252
Query: 261 PL---------------------------CSYCGKLGHSVDRCFKKHGYPPGLNFKNKSS 293
C++C GH+ D C++ GYP K K++
Sbjct: 253 HRFHKGGNIYCDFCNMKGHIRANCNKLKHCTHCNMQGHTKDTCYQLIGYPADYKGKKKAN 312
Query: 294 AV-----------------------------HHVDSSEVSGS----------------SV 308
V H V + +G+ SV
Sbjct: 313 IVTAPSLPQMQHNNFNNNLNYPMQYTGDGIGHFVSPMQFTGNTNGHSSGSIAGNFGPGSV 372
Query: 309 PQDPPITSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTS 368
PQ T SQY +L +L PM S S++ I F S+ + + +S
Sbjct: 373 PQ---FTPSQYNNILQMLN-----KPMLSESSANVAGI--------FAGSSHCNSNTHSS 416
Query: 369 VWILDSGASCHVCFHLSSFESYHSVRSHT--ISLPDNTKARVTHIGTVKLGNSLILHNVC 426
WI+DSGA+ H+ + + SV SH + LP A VTH G+ +L ++ NV
Sbjct: 417 AWIVDSGATDHMVSNTTLLNHGLSV-SHPGKVQLPTGDSAVVTHSGSSQLTGGDVVKNVL 475
Query: 427 YVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQE---NKLKTIGRGDTHNGLYYLHASSN 483
VPTF NLLSVS L + + FF F+IQ+ K+K IG + NGLY +
Sbjct: 476 CVPTFQFNLLSVSKLTKELNCCVIFFPDFFIIQDLFTGKVKEIG--EEINGLYITRPHQH 533
Query: 484 NVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYN---RLSLLSSTIHC 540
+ S T L+ + C + A +WH RLGH + ++ + S
Sbjct: 534 HDTSKKT--LAAIKG-CEE-------------AEMWHKRLGHIPMSVLRKIKMFDSPQKL 577
Query: 541 KIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTI 600
+PS C VCPLA+Q RLPF + + FDLIH DVWGP+ TH R+FLT+
Sbjct: 578 VLPS------CDVCPLARQVRLPFPISQSRSENCFDLIHLDVWGPYKAATHNKMRYFLTV 631
Query: 601 VDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKEL---QLTAFLEK 657
VDDHSR+TW FL+ KS+ + F M+ TQFG+ IK+ R+DN E Q +
Sbjct: 632 VDDHSRWTWIFLMHLKSDVSTVLQNFILMIDTQFGQKIKIFRSDNGTEFFNAQCDGLFKS 691
Query: 658 QGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPT 717
G +HQ SC PQQN VVERRH+ +L AR+L FQ H+P+ FWGEC+ +A H+IN IP+
Sbjct: 692 HGIVHQSSCPHTPQQNGVVERRHKHILETARALRFQGHLPIRFWGECVLSAVHIINRIPS 751
Query: 718 PNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGY 777
LHNKSP L+Y++ P ++RV GCLC ++ L +T + KGY
Sbjct: 752 SVLHNKSPFELMYKRSPDLSYMRVIGCLCHATNLVNTSTQ-----------------KGY 794
Query: 778 KLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESV 837
KLY+L + F +SRD+VFNE++FPFQ+ P + P D QP +
Sbjct: 795 KLYDLEHQHFFVSRDMVFNEAVFPFQSPALADPHDTPVFLASPPCSSHTEDADAVQPAII 854
Query: 838 PVPSADHIPATPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYDCPQQTTP----H 893
+++ I P+ S A S D + PP RRS R PP + D+ + +
Sbjct: 855 ---TSEEI--IPVASPPSAVSDDHLHPPPERRRSYRTGKPPIWQKDFITTSTSRSNHCLY 909
Query: 894 PLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVV 953
P+S Y L+ +Y+ Y + EP +++QA W AM+ E+ A+E N+TW+VV
Sbjct: 910 PISDNIDYSCLSSTYQCYIASSSVETEPQFYYQAANDCRWVHAMKEEIQALEDNKTWEVV 969
Query: 954 SLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRM 1013
SLP GK IG KWVYK+K G I+R KARLVAKGY Q+ G+DY +TFSPV K+ T+R
Sbjct: 970 SLPKGKKAIGCKWVYKIKYKASGEIERFKARLVAKGYNQKEGLDYQETFSPVVKMVTLRT 1029
Query: 1014 LLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQG--YDVKGENLTCRLKKSIYGLKQ 1071
+L LA W++ Q+D+ NAFL GDL EEVYM++PQG YD G+ CRL KS+YGLKQ
Sbjct: 1030 VLTLAVSKGWDIQQMDVYNAFLQGDLIEEVYMQLPQGFQYDKTGDPKVCRLLKSLYGLKQ 1089
Query: 1072 ASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVK 1131
ASRQW K ++ L GFQ S+ DYSL K + D V++L+YV+D++++G + ID K
Sbjct: 1090 ASRQWNVKLTTALLAAGFQQSHLDYSLMLKRTADGIVIVLIYVDDLLITGSSLQLIDDAK 1149
Query: 1132 QLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPN 1191
Q+LK+ FK+KDLG L++FLG+E A +A+G+ + QR YAL L+ D G +P+ P++ +
Sbjct: 1150 QVLKANFKIKDLGTLRYFLGMEFARNASGMLMHQRKYALELISDLGLGGSKPSVTPVELH 1209
Query: 1192 LKL----------SSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTT 1241
LKL SS LAD ++Y+RL+GRLLYLTI+RPDI+F + LSQF+ P
Sbjct: 1210 LKLTTREFDLHVGSSGADSLLADPTEYQRLVGRLLYLTITRPDISFAVQHLSQFMHAPKV 1269
Query: 1242 THLDALHHLLRYLKTTPGQGFFFLGQ 1267
+H++A +++Y+K PG G + Q
Sbjct: 1270 SHMEAAIRVVKYVKQAPGLGLYMAVQ 1295
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301698|pir||C84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1501
Score = 814 bits (2102), Expect = 0.0
Identities = 484/1360 (35%), Positives = 714/1360 (51%), Gaps = 157/1360 (11%)
Query: 23 NPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQ 82
+P+ L SDNPG ++ S LNG+NYN W M+ AL K K GFING PRP +DP +
Sbjct: 30 SPYTLASSDNPGAVISSVELNGDNYNQWATEMLNALQAKRKTGFINGTIPRPPPNDPNYE 89
Query: 83 SWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNL 142
+W + +++ WI + + ++V A +W+DL+ RF N RI+Q++ L +
Sbjct: 90 NWTAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKDLKQRFSVGNKVRIHQIRAQLSSC 149
Query: 143 QQESLTVTQFYTKHKAIWDELQDYLPQRSCVCGENRV-----LLDYFQQEQIMHFLMSLS 197
+Q+ V ++Y + +W+E Y P C CG R ++E+I F++ L
Sbjct: 150 RQDGQAVIEYYGRLSNLWEEYNIYKPVTVCTCGLCRCGATSEPTKEREEEKIHQFVLGLD 209
Query: 198 DS-YNQIKSHVLLMNPLPPMNRVFSMVLQEEK---------QREIA----ARSADLN--- 240
+S + + + ++ M+PLP + ++S V++EE+ Q+E A AR L+
Sbjct: 210 ESRFGGLCATLINMDPLPSLGEIYSRVIREEQRLASVHVREQKEEAVGFLARREQLDHHS 269
Query: 241 ----SAFAAQATNSGKSGKKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVH 296
S+ ++ T +S + R CS CG+ GH C++ G+P + +N +
Sbjct: 270 RVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEKKECWQIVGFPDWWSERNGGRGSN 329
Query: 297 ----------------HVDSSEVSGSSVPQDPPITSSQYQQLLSLLTAQLATSPMPSSST 340
V ++ + S+ P T ++ ++LS L + + S S++
Sbjct: 330 GRGRGGRGSNGGRGQGQVMAAHATSSNSSVFPEFTE-EHMRVLSQLVKEKSNSGSTSNNN 388
Query: 341 SEPLQIPSPTDLKGFVFSASSDFSHKTSVW--ILDSGASCHVCFHLSSFESYHSVRSHTI 398
S+ L S KT + ILDSGAS H+ LSS + V +
Sbjct: 389 SDRL-------------------SGKTKLGDIILDSGASHHMTGTLSSLTNVVPVPPCPV 429
Query: 399 SLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVI 458
D +KA +G + L N++ L NV +VP+ L+SVS LL+ + F +
Sbjct: 430 GFADGSKAFALSVGVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFL 489
Query: 459 QENKLKT-IGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAA 517
Q+ KT IG G+ G+YYL +P + H A
Sbjct: 490 QDRSSKTLIGSGEERGGVYYL---------TDVTPAKI------------HTANVDSDQA 528
Query: 518 LWHARLGHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDL 577
LWH RLGHPS++ LS L + K S++ + C VC AKQ R F + F L
Sbjct: 529 LWHQRLGHPSFSVLSSLP--LFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSL 586
Query: 578 IHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKV 637
IHCDVWGP+ VP G +FLTIVDD+SR WT+L+ KSE + F K + QFGK
Sbjct: 587 IHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKT 646
Query: 638 IKMVRTDNAKELQ-LTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHM 696
+KMVR+DN E L+++ + G +HQ SCV PQQN VER+H+ +LNVAR+LLFQ+ +
Sbjct: 647 VKMVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASL 706
Query: 697 PLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRH 756
P+ FWGE I TA +LIN P+ L ++P +L+ P Y LRVFG C+ + +
Sbjct: 707 PIKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVYSQLRVFGSACYVHRVTRDKD 766
Query: 757 KFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPF---------QNTRP 807
KF R+ C+ VGY G KG+K+Y++ F +SRDV+F E +FP+ + P
Sbjct: 767 KFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFREEVFPYAGVNSSTLASTSLP 826
Query: 808 YVYSQDPFLVPLP*VGLSVP-------------------------------PYDVP--QP 834
V D + +P V S+ P D P P
Sbjct: 827 TVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDTSVSDSEIPNQEFVPDDTPPSSP 886
Query: 835 ESVPVPSADHIPATPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADY---------- 884
SV + + P TP+V + +P P V P R+S R HPP L DY
Sbjct: 887 LSVSPSGSPNTPTTPIVVPVASPIP---VSPPKQRKSKRATHPPPKLNDYVLYNAMYTPS 943
Query: 885 -------DCPQQTTP-----HPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPE 932
D Q +T PL+ Y S + S++ Y + + EP +F +A+Q
Sbjct: 944 SIHALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAAITDNVEPKHFKEAVQIKV 1003
Query: 933 WQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQ 992
W AM TE+ A+E N+TWD+V LPPGK IGS+WV+K K + DG+++R+KARLV +G Q
Sbjct: 1004 WNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQ 1063
Query: 993 QNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYD 1052
G DY +TF+PV ++TTVR LL A +WE++Q+D++NAFL+GDL EEVYMK+P G+
Sbjct: 1064 VEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFR 1123
Query: 1053 VKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLV 1112
+ CRL+KS+YGLKQA R WF K S L + GF SY DYSLF+ + + +L+
Sbjct: 1124 HSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLI 1183
Query: 1113 YVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSL 1172
YV+D+++ G + + K L F +KDLGKLK+FLG+E++ GI LSQR YAL +
Sbjct: 1184 YVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDV 1243
Query: 1173 LHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKL 1232
+ D+G RP P++ N L+SD GP L+D YRRL+GRLLYL +RP+++++++ L
Sbjct: 1244 IADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVL 1303
Query: 1233 SQFLSKPTTTHLDALHHLLRYLKTTPGQGFFFLGQQPPLS 1272
+QF+ P H DA ++RYLK +PGQG L P L+
Sbjct: 1304 AQFMQNPREAHFDAALRVVRYLKGSPGQG-ILLNADPDLT 1342
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 784 bits (2024), Expect = 0.0
Identities = 473/1328 (35%), Positives = 702/1328 (52%), Gaps = 119/1328 (8%)
Query: 23 NPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQ 82
+P+ L SDNPG ++ S L G+NYN W+ M+ AL K K GFING +P D+P +
Sbjct: 25 SPYTLASSDNPGAMISSVMLTGDNYNEWSTEMLNALQAKRKTGFINGSISKPPLDNPDYE 84
Query: 83 SWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNL 142
+W + +++ WI + + S+V A ++W +L+ RF N R++Q+K L
Sbjct: 85 NWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQIKAQLAAC 144
Query: 143 QQESLTVTQFYTKHKAIWDELQDYLPQRSC-----VCGENRVLLDYFQQEQIMHFLMSLS 197
+Q+ V +Y + +W+E Q Y P C CG ++E+I F++ L
Sbjct: 145 RQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLD 204
Query: 198 DS-YNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFA-----AQATNSG 251
DS + + + ++ M+P P + ++S V++EE++ SA ++ T G
Sbjct: 205 DSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQSAIGFLTRQSEVTADG 264
Query: 252 KSGK---KDRDRP-LCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSS 307
++ K RDR LCS+CG+ GH C++ G+P + SS
Sbjct: 265 RTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSRGRGGRSS 324
Query: 308 VPQDPPITSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSD-FSHK 366
+ Q + A TS + S P Q+ T + + +SD S K
Sbjct: 325 GSNNSGRGRGQ------VTAAHATTSNLSSFPEFTPDQLRVITQMIQNKNNGTSDKLSGK 378
Query: 367 TSVW--ILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHN 424
+ ILD+GAS H+ LS + ++ S ++ D+ K +GT KL ++ L N
Sbjct: 379 MKLGDVILDTGASHHMTGQLSLLTNIVTIPSCSVGFADDRKTFAISMGTFKLSETVSLSN 438
Query: 425 VCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKT-IGRGDTHNGLYYLHASSN 483
V YVP +L+SVS L++ K F V+Q+ +T IG G+ +G+YYL
Sbjct: 439 VLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLT---- 494
Query: 484 NVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKIP 543
A+T+ + H T ALWH RLGHPS++ LS L +
Sbjct: 495 ---DAATTTV--------------HKVDVTTDHALWHQRLGHPSFSVLSSLP--LFSGSS 535
Query: 544 SSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDD 603
S++ C VC AKQ R F ++ + F LIHCDVWGP+ VP+ G +FLTIVDD
Sbjct: 536 CSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDD 595
Query: 604 HSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQ-LTAFLEKQGTLH 662
SR WT+L+ KSE + F + QFGK +K++R+DN E L+++ ++QG +H
Sbjct: 596 FSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVH 655
Query: 663 QFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHN 722
Q SCV PQQN VER+H+ +LNV+R+LLFQ+ +P+ FWGE + TA +LIN P+ +
Sbjct: 656 QTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNG 715
Query: 723 KSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNL 782
SP LL+ P YD LRVFG C++ + + KF R+ C+ VGY G KG+K+Y+L
Sbjct: 716 LSPYELLHGCKPDYDQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDL 775
Query: 783 TTKTFHISRDVVFNESIFPFQN-----------TRPYVYSQD--PFLV------------ 817
+T F +SRDVVF E++FP+ T P Y +D PF
Sbjct: 776 STNEFIVSRDVVFRENVFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENSLS 835
Query: 818 --PLP*VGLSVPPYDVPQPESVPVPSADHIPATPLVSEIVAP-------SPDAIVPPLAV 868
P+ +S + P+S+P P D + + V+ P SP V P
Sbjct: 836 DPPVCVTDVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQQ 895
Query: 869 RRSTRVRHPP-----------GYLADY-----DCPQQTTPHPLS---------------- 896
+ + + P L DY C TPH LS
Sbjct: 896 DTTPIIENTPPRQGKRQVQQLARLKDYILYNASC-TPNTPHVLSPSTSQSSSSIQGNSQY 954
Query: 897 --TYYSYDK-LTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVV 953
T Y +D+ + +KV+ + ++ EP +F +A++ W AM E+ A+E N+TWD+V
Sbjct: 955 PLTDYIFDECFSAGHKVFLAAITANDEPKHFKEAVKVKVWNDAMYKEVDALEVNKTWDIV 1014
Query: 954 SLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRM 1013
LP GK IGS+WVYK K + DG+++R+KARLV +G Q G DY +TF+PV K+TTVR
Sbjct: 1015 DLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRT 1074
Query: 1014 LLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQAS 1073
LL L A +WE++Q+D++NAFL+GDL EEVYMK+P G+ + CRL+KS+YGLKQA
Sbjct: 1075 LLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAP 1134
Query: 1074 RQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQL 1133
R WF K S L + GF Y DYS F+ + +LVYV+D+I+ G + + K+
Sbjct: 1135 RCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEY 1194
Query: 1134 LKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLK 1193
L F +KDLGKLK+FLG+E++ GI LSQR YAL ++ D+G RP P++ N
Sbjct: 1195 LGRCFSMKDLGKLKYFLGIEVSRGPDGIFLSQRKYALDIISDSGTLGARPAYTPLEQNHH 1254
Query: 1194 LSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRY 1253
L+SD GP L D +RRL+GRLLYL +RP+++++++ LSQF+ P HL+A ++RY
Sbjct: 1255 LASDDGPLLQDPKPFRRLVGRLLYLLHTRPELSYSVHVLSQFMQAPREAHLEAAMRIVRY 1314
Query: 1254 LKTTPGQG 1261
LK +PGQG
Sbjct: 1315 LKGSPGQG 1322
>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like
polyprotein [Arabidopsis thaliana] gi|7488175|pir||G71406
probable retrovirus-related polyprotein - Arabidopsis
thaliana
Length = 1489
Score = 776 bits (2003), Expect = 0.0
Identities = 489/1403 (34%), Positives = 717/1403 (50%), Gaps = 267/1403 (19%)
Query: 18 MENSSNPFFLHHSDNPGLILVSQPLN-GENYNSWNRSMMIALSVKNKLGFINGDFPRPAD 76
++ NP++LH +D+ GLILVS L +++SW RS+++AL+V+NKLGFING +P +
Sbjct: 27 VDQYENPYYLHSADHAGLILVSDRLTTASDFHSWRRSILMALNVRNKLGFINGTITKPPE 86
Query: 77 DDPLLQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLK 136
D +W R + +V +W++N V K I S++ + + IW +L RF Q + RI+ ++
Sbjct: 87 DHRDFGAWSRCNDIVSTWLMNSVDKKIGQSLLYIATVQGIWNNLLSRFKQDDAPRIFDIE 146
Query: 137 KDLLNLQQESLTVTQFYTKHKAIWDELQDYLPQRSCVCG----ENRVLLDYFQQEQIM-- 190
+ L ++Q S+ ++ +YT +W+E ++Y+ C CG + V ++ QQ +
Sbjct: 147 QKLSKIEQGSMDISTYYTALLTLWEEHRNYVELPVCTCGRCECDAAVKWEHLQQRSRVTK 206
Query: 191 --------------HFLM-----SLSDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQ-- 229
H LM ++ +++N + N + P+ RV S+ Q
Sbjct: 207 FLKELNEGFDQTRRHILMLKPIPTIKEAFNMVTQDERQRN-VKPLTRVDSVAFQNTSMIN 265
Query: 230 REIAARSADLNSAFAAQ---ATNSGKSGK------KDRDRPLCSYCGKLGHSVDRCFKKH 280
+ A A N+ Q T+ GK G K P G G++ + H
Sbjct: 266 EDENAYVAAYNTVRPNQKPICTHCGKVGHTIQKCYKVHGYPPGMKTGNTGYTYKPNPQLH 325
Query: 281 GYP---------------PGLNFKNKSSAVHHV--DSSEVSGSSVPQDPPI--------- 314
P P N K++ V V ++ Q P +
Sbjct: 326 VQPRMPMMPQPRMQFPAQPYTNSMQKANVVAQVYAETGAYPSEGYSQAPMMNPYGSYPMP 385
Query: 315 --------------TSSQYQQLLSLLTAQLAT-SPMPSSSTSEPLQ-------------- 345
T Q +Q++S AQ+ P SSS PL
Sbjct: 386 HITHGGNNLSLQDFTPQQIEQMISQFQAQVQVPEPAASSSNPSPLATVSEHGFMALTSTS 445
Query: 346 ---IPSPT--------DLK--GFVFSASSDFSHKTSVWILDSGASCHVCFHLSSFESYHS 392
IP P+ DLK SA F + WI+DSGAS HVC L+ F S
Sbjct: 446 GTIIPFPSTSLKYENNDLKFQNHTLSALQKFL-PSDAWIIDSGASSHVCSDLAMFRELKS 504
Query: 393 VRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFF 452
V GTV + LILHNV +VP F NL+SVS+L++ S HF+
Sbjct: 505 VS-----------------GTVHITQKLILHNVLHVPDFKFNLMSVSSLVKTISCSAHFY 547
Query: 453 HKTFVIQE-NKLKTIGRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNK 511
+IQE ++ IGRG ++ LY L + + +++ + S+ N
Sbjct: 548 VDCCLIQELSQGLMIGRGRLYHNLYILETENTSPSTSTPAACLFTGSVLNDG-------- 599
Query: 512 STCTAALWHARLGHPSYNRLSLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFA 571
LWH RLGHPS S + L K KRL ++S N+ A
Sbjct: 600 -----HLWHQRLGHPS--------SVV-----------------LQKLKRLAYISHNNLA 629
Query: 572 NHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQ 631
++ FDL+H D+WGPF + + G R+FLT+VDD +R TW +++++K + F K+V
Sbjct: 630 SNPFDLVHLDIWGPFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVS 689
Query: 632 TQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLL 691
TQF IK +R+DNA EL T +++ G LH FSC PQQNSVVER+HQ +LNVAR+LL
Sbjct: 690 TQFNAKIKAIRSDNAPELGFTEIVKEHGMLHHFSCAYTPQQNSVVERKHQHILNVARALL 749
Query: 692 FQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTL 751
FQS++P+ +W +C++TA LIN +P+P L+NKSP L+ + P Y L+ FGCLCF ST
Sbjct: 750 FQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPYELILNKQPDYSLLKNFGCLCFVSTN 809
Query: 752 PSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYS 811
R KF+PRA CV +GY GYKGYK+ +L + + +SR+VVF E +FPF+ + +
Sbjct: 810 AHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSVTVSRNVVFKEHVFPFKTSELLNKA 869
Query: 812 QDPF---LVPLP*VGLSVPPYDVPQPESVPVPSADHIPATPLVSEIVAPSPDAIVPP--- 865
D F ++PLP V + +S+ + D A S + P +I+PP
Sbjct: 870 VDMFPNSILPLPAPLHFVETMPLIDEDSLIPTTTDSRTADNHASSSSSALP-SIIPPSSN 928
Query: 866 ----------LAVRRSTRVRHPPGYLADYDC----------------------------- 886
+ + RS R P YL++Y C
Sbjct: 929 TETQDIDSNAVPITRSKRTTRAPSYLSEYHCSLVPSISTLPPTDSSIPIHPLPEIFTASS 988
Query: 887 PQQTTPHPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEA 946
P++TTP+P+ST SYDK TP + Y + EP F QA++ +W + EL AME
Sbjct: 989 PKKTTPYPISTVVSYDKYTPLCQSYIFAYNTETEPKTFSQAMKSEKWIRVAVEELQAMEL 1048
Query: 947 NQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVA 1006
N+TW V SLPP K+ +G KWV+ +K +PDG+++R+KARLVA+G+TQQ GID++DTFSPVA
Sbjct: 1049 NKTWSVESLPPDKNVVGCKWVFTIKYNPDGTVERYKARLVAQGFTQQEGIDFLDTFSPVA 1108
Query: 1007 KITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGY-----DVKGENLTCR 1061
K+T+ +M+L LAA+ W L Q+D+++AFL+GDL EE++M +PQGY + N CR
Sbjct: 1109 KLTSAKMMLGLAAITGWTLTQMDVSDAFLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCR 1168
Query: 1062 LKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSG 1121
L KSIYGLKQASRQW+ + FV LVY++DI+++
Sbjct: 1169 LLKSIYGLKQASRQWYKR---------------------------FVAALVYIDDIMIAS 1201
Query: 1122 PNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDC 1181
N E++++K LL+S FK+KDLG +FFLGL C
Sbjct: 1202 NNDAEVENLKALLRSEFKIKDLGPARFFLGL--------------------------LGC 1235
Query: 1182 RPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTT 1241
+P+S+PMDP L L D G L + + YR+LIGRLLYLTI+RPDI + +++LSQF+S P+
Sbjct: 1236 KPSSIPMDPTLHLVRDMGTPLPNPTAYRKLIGRLLYLTITRPDITYAVHQLSQFISAPSD 1295
Query: 1242 THLDALHHLLRYLKTTPGQGFFF 1264
HL A H +LRY+K PGQG +
Sbjct: 1296 IHLQAAHKVLRYIKANPGQGLMY 1318
>emb|CAB77940.1| putative polyprotein [Arabidopsis thaliana] gi|4325355|gb|AAD17352.1|
contains similarity to retrovirus-related polyproteins
[Arabidopsis thaliana] gi|25301678|pir||C85077 probable
polyprotein [imported] - Arabidopsis thaliana
Length = 1366
Score = 742 bits (1915), Expect = 0.0
Identities = 477/1258 (37%), Positives = 671/1258 (52%), Gaps = 159/1258 (12%)
Query: 100 SKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYTKHKAI 159
S D+ S ++ A +W L+ R Q N ++IY ++ L L Q SL ++ +YT+
Sbjct: 64 SGDLGSGMVYFYDAHLLWLKLEGRSRQSNLSKIYSVQNQLDRLHQGSLDLSAYYTRLTVT 123
Query: 160 --------WDELQDY--LPQRSC---VCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSH 206
W+EL+++ LP +C CG N + +++ I+ FLM L++S+ Q +
Sbjct: 124 FIRSQCLSWEELKNFEELPSCTCGKCTCGSNDRWIQLYEKHNIVRFLMRLNESFIQARRQ 183
Query: 207 VLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFAAQATNSGKS--GKKDRDRPLCS 264
+L+M+PLP +++ + Q+++QR + F A T ++ + RPLC+
Sbjct: 184 ILMMDPLPEFTNLYNFISQDDQQRSFNSMPTTEKPVFQASITQQKPKFFNQQGKSRPLCT 243
Query: 265 YCGKLGHSVDRCFKKHGYPPGLN------FKNKSS--------AVHHVDSSEVSGSSVPQ 310
YCG LGH+ RC+K HGYPPG + N S +H +G+S
Sbjct: 244 YCGLLGHTNARCYKLHGYPPGYKVPVGTCYNNDKSRGQPYPHNGIHMSHLITYNGNSYAP 303
Query: 311 DPPITSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSVW 370
++ L + + +PM + + + G V S S +H SV
Sbjct: 304 IVQANNNAPYALYNQAYNGNSYAPMAQNFAGNHIISDGSSMSAGNVTSESPTVNH--SVN 361
Query: 371 ILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPT 430
+++SG F SS V VT + T G+ + V PT
Sbjct: 362 MMNSGRG----FLGSSSHGREQVNQ-----------MVTQLNTQLQGSP---YQVIRPPT 403
Query: 431 FTVNLLSVSA--LLENPKYSIHFFHKTFVIQENKLKTIGRGDTHN--------GLYYLHA 480
+ N S+SA + P + I F +I +N R H +Y++
Sbjct: 404 VSQNHGSISAQGMSPIPSHYISAFEPCLIIPQNTWSLDTRASCHICCDLSLFCNVYHIDH 463
Query: 481 SS----NNV-FSASTSPLSVLNS-LCNQSVF--PS-HCNKSTCTAALWHARLGHPSYNRL 531
++ NN+ S + + LN L VF PS H N + RLGHPS +R+
Sbjct: 464 TNITLPNNIKISINIAETVKLNDRLILHLVFYVPSFHFNLIS--------RLGHPSMSRV 515
Query: 532 SLLSSTIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTH 591
LSS +H IP ++E C +C L+KQK L FVS N F LIH D
Sbjct: 516 QALSSNLH--IPQKLSEFHCKICHLSKQKCLSFVSNNKIYEEPFPLIHID---------- 563
Query: 592 VGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQL 651
S+ F K+VQTQFG +K +R+DNA ELQ
Sbjct: 564 -------------------------SDVTTIFPEFLKLVQTQFGCTVKSIRSDNAPELQF 598
Query: 652 TAFLEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHL 711
L G H SC PQQN VVER HQ LLNVARSL FQS++PL +W EC+STA L
Sbjct: 599 KDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLNVARSLYFQSNIPLAYWPECVSTAAFL 658
Query: 712 INLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYK 771
IN PTPNL +KSP +LY++ P Y+ LRVF CLC++ST RHKF+ RA CV +GY+
Sbjct: 659 INRTPTPNLEHKSPYEVLYKKLPDYNSLRVFCCLCYASTHQHERHKFTERATSCVFIGYE 718
Query: 772 QGYKGYKLYNLTTKTFHISRDVVFNESIFPF--QNTRPYVYSQDPFLVPLP*-------- 821
G+KGYK+ +L + T ++R+VVF+E+IFPF +++ V D ++P+
Sbjct: 719 SGFKGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQNVSFFDDSVLPISEKQKENRFQ 778
Query: 822 -------VGLSVPPYDVPQPESVPVPSADHIPA---TPLVSEIVAPSPDAIVPPLAVRRS 871
+ L V P V +P +VP + A T + ++ D + P R+
Sbjct: 779 IYDYFNVLNLEVCP--VIEPTTVPAHTHTRSLAPLSTTVTNDQFGNDMDNTLMP---RKE 833
Query: 872 TRVRHPPGYLADYDCPQ---------QTTPHPLSTYYSYDKLTPSYKVYSVKVASHYEPT 922
TR P YL+ Y C T H LS++ SYDKL+ Y+++ + + EPT
Sbjct: 834 TRA---PSYLSQYHCSNVLKEPSSSLHGTAHSLSSHLSYDKLSNEYRLFCFAIIAEKEPT 890
Query: 923 YFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHK 982
F +A +W AM EL A+ + T ++ SL GK IG KWV+K+K DG+I+R+K
Sbjct: 891 TFKEAALLQKWLDAMNVELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERYK 950
Query: 983 ARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEE 1042
ARLVA GYTQQ G+DY+DTFSP+AK+T+VR++LALAA++ W + Q+D+ NAFL+GD EE
Sbjct: 951 ARLVANGYTQQEGVDYIDTFSPIAKLTSVRLILALAAIHNWSISQMDVTNAFLHGDFEEE 1010
Query: 1043 VYMKIPQGYDV-KGENL----TCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYS 1097
+YM++PQGY KGE L CRL KS+YGLKQASRQWF KFS VL Q+GF S D +
Sbjct: 1011 IYMQLPQGYTPRKGELLPKRPVCRLVKSLYGLKQASRQWFHKFSGVLIQNGFMQSLFDPT 1070
Query: 1098 LFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYS 1157
LF + DTF+ LLVYV+DI++ + + VKQ+L FKLKDLG+ ++FLGLEIA S
Sbjct: 1071 LFVRVREDTFLALLVYVDDIMLVSNKDSAVIEVKQILAKEFKLKDLGQKRYFLGLEIARS 1130
Query: 1158 ATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLY 1217
GIS+SQR YAL LL + GF C+P PM+ NLKLS + G L D+S YR+LIGRL+Y
Sbjct: 1131 KEGISISQRKYALELLEEFGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVY 1190
Query: 1218 LTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFFLGQQPPLSQLT 1275
LT++RPDI F +NKL+Q++S P HL A +LRYLK PGQG F+ P S LT
Sbjct: 1191 LTVTRPDICFAVNKLNQYMSAPREPHLMAARRILRYLKNDPGQGVFY----PASSTLT 1244
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301695|pir||D84481 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1413
Score = 686 bits (1770), Expect = 0.0
Identities = 421/1222 (34%), Positives = 625/1222 (50%), Gaps = 119/1222 (9%)
Query: 23 NPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQ 82
+P+ L SDNPG ++ S L G+NYN W+ M+ AL K K GFING +P D+P +
Sbjct: 25 SPYTLASSDNPGAMISSVMLTGDNYNEWSTKMLNALQAKRKTGFINGSISKPPLDNPDYE 84
Query: 83 SWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNL 142
+W + +++ WI + + S+V A ++W +L+ RF N ++Q+K L
Sbjct: 85 NWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAAC 144
Query: 143 QQESLTVTQFYTKHKAIWDELQDYLPQRSC-----VCGENRVLLDYFQQEQIMHFLMSLS 197
+Q+ V +Y + +W+E Q Y P C CG ++E+I F++ L
Sbjct: 145 RQDGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGLD 204
Query: 198 DS-YNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSADLNSAFA-----AQATNSG 251
DS + + + ++ M+P P + ++S V++EE++ SA ++ T G
Sbjct: 205 DSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQSAIGFLTRQSEVTADG 264
Query: 252 KSGK---KDRDRP-LCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSS 307
++ K RDR LCS+CG+ GH C++ G+P + SS
Sbjct: 265 RTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERTNGGGRGSSSRGRGGRSS 324
Query: 308 VPQDPPITSSQYQQLLSLLTAQLAT----SPMPSSSTSEPLQIPSPTDLKGFVFSASSDF 363
+ Q +TA AT SP P + + I K S
Sbjct: 325 GSNNSGRGRGQ-------VTAAHATTSNLSPFPEFTPDQLRVITQMIQNKNNGTSDKLSG 377
Query: 364 SHKTSVWILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILH 423
K ILD+GAS H+ LS + ++ S ++ D K +GT KL ++ L
Sbjct: 378 KMKLGDVILDTGASHHMTGQLSLLTNIVTIPSCSVGFADGRKTFAISMGTFKLSETVSLS 437
Query: 424 NVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKT-IGRGDTHNGLYYLHASS 482
NV YVP +L+SVS L++ K F V+Q+ +T IG G+ +G+YYL
Sbjct: 438 NVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLT--- 494
Query: 483 NNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKI 542
A+T+ + H T ALWH RLGHPS++ LS L +
Sbjct: 495 ----DAATTTV--------------HKVDITTDHALWHQRLGHPSFSVLSSLP--LFSGS 534
Query: 543 PSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVD 602
S++ C VC AKQ R F ++ + F LIHCDVWGP+ VP+ G +FLTIVD
Sbjct: 535 SCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVD 594
Query: 603 DHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQ-LTAFLEKQGTL 661
D SR WT+L+ KSE + F + QFGK +K++R+DN E L+++ ++QG +
Sbjct: 595 DFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIV 654
Query: 662 HQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLH 721
HQ SCV PQQN VER+H+ +LNV+R+LLFQ+ +P+ FWGE + TA +LIN P+ +
Sbjct: 655 HQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHN 714
Query: 722 NKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYN 781
SP LL+ P YD LRVFG C++ + + KF R+ C+ VGY G KG+K+Y+
Sbjct: 715 GLSPYELLHGCKPDYDQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYD 774
Query: 782 LTTKTFHISRDVVFNESIFPFQN-----------TRPYVYSQD--PFLV----------- 817
L+T F +SRDVVF E++FP+ T P Y +D PF
Sbjct: 775 LSTNEFIVSRDVVFRENVFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENYL 834
Query: 818 ---PLP*VGLSVPPYDVPQPESVPVPSADHIPATPLVSEIVAP-------SPDAIVPP-- 865
P+ +S + P+S+P P D + + V+ P SP V P
Sbjct: 835 SDPPVCVTNVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQ 894
Query: 866 ---------LAVRRSTRVRHPPGYLADY---------DCPQQTTP--------------H 893
R+ R P L DY + P +P +
Sbjct: 895 QDTTPIIENTPPRQGKRQVQQPARLKDYILYNASCTPNTPHVLSPSTSQSSSSIQGNLQY 954
Query: 894 PLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVV 953
PL+ Y S + + +KV+ + ++ EP +F + ++ W AM E+ A+E N+TWD+V
Sbjct: 955 PLTDYISDECFSAGHKVFLAAITANDEPKHFKEDVKVKVWNDAMYKEVDALEVNKTWDIV 1014
Query: 954 SLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRM 1013
LP GK IGS+WVYK K + DG+++R+KARLV +G Q G DY +TF+PV K+TTVR
Sbjct: 1015 DLPTGKVAIGSQWVYKTKFNADGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRT 1074
Query: 1014 LLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQAS 1073
LL L A +WE++Q+D++NAFL+GDL EEVYMK+P G+ + CRL+KS+YGLKQA
Sbjct: 1075 LLRLVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAP 1134
Query: 1074 RQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQL 1133
R WF K S L + GF Y DYS F+ + +LVYV+D+I+ G + + K+
Sbjct: 1135 RCWFKKLSDALKRFGFIQGYEDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEY 1194
Query: 1134 LKSAFKLKDLGKLKFFLGLEIA 1155
L F +KDLGKLK+FLG+E++
Sbjct: 1195 LGRCFSMKDLGKLKYFLGIEVS 1216
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 678 bits (1749), Expect = 0.0
Identities = 429/1253 (34%), Positives = 657/1253 (52%), Gaps = 87/1253 (6%)
Query: 38 VSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPAD----DDPLLQSWIRNDHVVMS 93
VS L+G+NY+ W+ M L K G+++G + P + D + +W N+ +++
Sbjct: 12 VSVRLDGKNYSYWSYVMRNFLKGKKMWGYVSGTYVVPKNTEEGDTVSIDTWEANNAKIIT 71
Query: 94 WILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFY 153
WI N V I + + +AKE+W LQ F Q N + YQL+ D+ L Q+++++ +FY
Sbjct: 72 WINNYVEHSIGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRALHQKNMSIQEFY 131
Query: 154 TKHKAIWDELQDYLPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPL 213
+ +WD+L CG ++ +Q++++ FL +L + ++ +L +PL
Sbjct: 132 SAMTDLWDQLALTESVELKACG---AYIERREQQRLVQFLTALRSDFEGLRGSILHRSPL 188
Query: 214 PPMNRVFSMVLQEEKQREIAARSADLNSAFAAQATNSGKSGKKDRDRPL-------CSYC 266
P ++ V S +L EE + + + L+++ + K +++P CS+C
Sbjct: 189 PSVDSVVSELLAEEIRLQSYSEKGILSASNPSVLAVPSKPFSNHQNKPYTRVGFDECSFC 248
Query: 267 GKLGHSVDRCFK--------KHGYPPGLNFKNKSSAV---HHVDSSEVSGSSVPQDPPIT 315
+ GH +C K K G N HH ++ S S+ DP
Sbjct: 249 KQKGHWKAQCPKLRQQNQAWKSGSQSQSNAHRSPQGYKPPHHNTAAVASPGSIT-DPNTL 307
Query: 316 SSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTSVWILDSG 375
+ Q+Q+ LSL ++ S + Q+P +SS SH S W+LDSG
Sbjct: 308 AEQFQKFLSLQPQAMSASSIG--------QLPH----------SSSGISH--SEWVLDSG 347
Query: 376 ASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNL 435
AS H+ SSF S + S + D T + +G+V + L L NV +P +NL
Sbjct: 348 ASHHMSPDSSSFTSVSPLSSIPVMTADGTPMPLAGVGSV-VTLHLSLPNVYLIPKLKLNL 406
Query: 436 LSVSALLENPKYSIHFFHKTFVIQE-NKLKTIGRGDTHNGLYYL-HASSNNVFSASTSPL 493
S+ + ++ Y + F +Q+ K IG G NGLY L V +A+T L
Sbjct: 407 ASIGQICDSGDYLVMFSGSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVVVAATTVDL 466
Query: 494 SVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKIPSSINENVCPV 553
S + S F LWH+RLGH S +RL L+ST + + + C
Sbjct: 467 SFFRLSLSSSSF-----------YLWHSRLGHVSSSRLRFLASTGALGNLKTCDISDCSG 515
Query: 554 CPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLI 613
C LAK LPF ++ FDLIH DVWGP V T G R++++ +DDH+R+ W +L+
Sbjct: 516 CKLAKFSALPFNRSTSVSSSPFDLIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLM 575
Query: 614 KHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQLTAF---LEKQGTLHQFSCVERP 670
KH+SE AF +++TQ VIK R D E F L GT+HQ SC + P
Sbjct: 576 KHRSEFFEIYAAFRALIKTQHSAVIKCFRCDLGGEYTSNKFCQMLALDGTIHQTSCTDTP 635
Query: 671 QQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLY 730
+QN V ER+H+ ++ ARSLL + + FWGE + TA LIN IP+ + SP LY
Sbjct: 636 EQNGVAERKHRHIVETARSLLLSAFVLSEFWGEAVLTAVSLINTIPSSHSSGLSPFEKLY 695
Query: 731 QQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHIS 790
P Y RVFGC F R+K S R+ CV +GY +G KGY+ ++ T+ ++S
Sbjct: 696 GHVPDYSSFRVFGCTYFVLHPHVERNKLSSRSAICVFLGYGEGKKGYRCFDPITQKLYVS 755
Query: 791 RDVVFNESI--FPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQ-PESVPVPSADHIPA 847
VVF E I F +T + D + + P+ ++ P +
Sbjct: 756 HHVVFLEHIPFFSIPSTTHSLTKSDL---------IHIDPFSEDSGNDTSPYVRSICTHN 806
Query: 848 TPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYDCPQQTTPHPLSTY---YSYDKL 904
+ +++ +P+A A + S+ + PP P+Q+ ST ++Y
Sbjct: 807 SAGTGTLLSGTPEASFSSTAPQASSEIVDPP--------PRQSIRIRKSTKLPDFAYSCY 858
Query: 905 TPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGS 964
+ S+ + + +EP+ + +AI P QQAM EL+A+ TWD+V LPPGK +G
Sbjct: 859 SSSFTSFLAYIHCLFEPSSYKEAILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGC 918
Query: 965 KWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWE 1024
+WVYK+K + DGSI+R+KARLVAKGY+QQ G+DY +TF+P+AK+TT+R L+A+A++ +W
Sbjct: 919 RWVYKIKTNSDGSIERYKARLVAKGYSQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWH 978
Query: 1025 LFQLDINNAFLNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVL 1084
+ QLD+ NAFLNGDL EEVYM P G C+LKK++YGLKQA R WF KFS V+
Sbjct: 979 ISQLDVKNAFLNGDLQEEVYMAPPPGIS-HDSGYVCKLKKALYGLKQAPRAWFEKFSIVI 1037
Query: 1085 TQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLG 1144
+ GF S HD +LF K + ++L +YV+D+I++G + I +K L F++KDLG
Sbjct: 1038 SSLGFVSSSHDSALFIKCTDAGRIILSLYVDDMIITGDDIDGISVLKTELARRFEMKDLG 1097
Query: 1145 KLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELAD 1204
L++FLG+E+AYS G LSQ Y ++L TD + P++ N + SS G L D
Sbjct: 1098 YLRYFLGIEVAYSPRGYLLSQSKYVANILERARLTDNKTVDTPIEVNARYSSSDGLPLID 1157
Query: 1205 SSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTT 1257
+ YR ++G L+YLTI+ PDIA+ ++ +SQF++ PTT H A+ +LRYL+ T
Sbjct: 1158 PTLYRTIVGSLVYLTITHPDIAYAVHVVSQFVASPTTIHWAAVLRILRYLRGT 1210
>pir||G86301 probable retroelement polyprotein [imported] - Arabidopsis thaliana
gi|9989054|gb|AAG10817.1| Putative retroelement
polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 666 bits (1719), Expect = 0.0
Identities = 345/722 (47%), Positives = 466/722 (63%), Gaps = 32/722 (4%)
Query: 551 CPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWT 610
C +C AKQK+L + S ++ FDL+H DVWGPF PT G+ +FLTIVDDH+R TW
Sbjct: 566 CDICQRAKQKKLTYPSRHNICLAPFDLLHIDVWGPFSEPTQEGYHYFLTIVDDHTRVTWV 625
Query: 611 FLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLEKQGTLHQFSCVERP 670
+L+K+KS+ F MV+TQ+ +K VR+DNA EL+ ++G + SC E P
Sbjct: 626 YLMKYKSDVLTIFPDFITMVETQYDTKVKAVRSDNAPELKFEELYRRKGIVAYHSCPETP 685
Query: 671 QQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLY 730
+QNSVVER+HQ +LNVAR+LLFQS +PL +WG+CI TA +IN P+P + NK+ +L
Sbjct: 686 EQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLFEMLT 745
Query: 731 QQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHIS 790
++ P Y HL+ FGCLC++ST P RHKF RA C +GY GYKGYKL +L + T IS
Sbjct: 746 KKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLGYPSGYKGYKLLDLESHTIFIS 805
Query: 791 RDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESVPVPSADHIPATPL 850
R+VVF E +FPF+ T+P + P + V D P+ PL
Sbjct: 806 RNVVFYEDLFPFK-TKPAENEESSVFFP-----------------HIYVDRNDSHPSQPL 847
Query: 851 -VSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYDCPQQT--TPHPLSTYYSYDKLTPS 907
V E A + VP A ++++RV PP YL DY C T T HP+S SY L+
Sbjct: 848 PVQETSASN----VP--AEKQNSRVSRPPAYLKDYHCNSVTSSTDHPISEVLSYSSLSDP 901
Query: 908 YKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWV 967
Y ++ V EP + QA Q EW AM E+ A+E N TW V SLP GK +G KWV
Sbjct: 902 YMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCKWV 961
Query: 968 YKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQ 1027
YK+KL+ DGS++R+KARLVAKGYTQ G+DY+DTFSPVAK+TTV++L+A+AA W L Q
Sbjct: 962 YKIKLNADGSLERYKARLVAKGYTQTEGLDYVDTFSPVAKLTTVKLLIAVAAAKGWSLSQ 1021
Query: 1028 LDINNAFLNGDLFEEVYMKIPQGY-----DVKGENLTCRLKKSIYGLKQASRQWFAKFSS 1082
LDI+NAFLNG L EE+YM +P GY D N CRLKKS+YGLKQASRQW+ KFS
Sbjct: 1022 LDISNAFLNGSLDEEIYMTLPPGYSPRQGDSFPPNAVCRLKKSLYGLKQASRQWYLKFSE 1081
Query: 1083 VLTQHGFQHSYHDYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKD 1142
L GF S D++LFT+ S ++++ +LVYV+DII++ E + ++ L+ + KL+D
Sbjct: 1082 SLKALGFTQSSGDHTLFTRKSKNSYMAVLVYVDDIIIASSCDRETELLRDALQRSSKLRD 1141
Query: 1143 LGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPEL 1202
LG L++FLGLEIA + GIS+ QR Y L LL +TG C+ +S+PM+PN KLS + G +
Sbjct: 1142 LGTLRYFLGLEIARNTDGISICQRKYTLELLAETGLLGCKSSSVPMEPNQKLSQEDGELI 1201
Query: 1203 ADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGF 1262
D+ YR+L+G+L+YLT +RPDI + +++L QF S P HL A++ ++ YLK T GQG
Sbjct: 1202 DDAEHYRKLVGKLMYLTFTRPDITYAVHRLCQFTSAPRVPHLKAVYKIIYYLKGTVGQGL 1261
Query: 1263 FF 1264
F+
Sbjct: 1262 FY 1263
Score = 249 bits (636), Expect = 5e-64
Identities = 161/498 (32%), Positives = 260/498 (51%), Gaps = 57/498 (11%)
Query: 23 NPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQ 82
+P FLH++D+PG+ +VS L+G NYN W+ +M IAL KNK+ FI+G PRP + + LL+
Sbjct: 52 SPLFLHNADHPGISIVSVQLDGANYNQWSSAMKIALDAKNKIAFIDGSCPRPEEGNHLLR 111
Query: 83 SWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNL 142
W R + +V SWILN V+++I S++ A +IW DL +RFH N R +QL + + +L
Sbjct: 112 IWSRCNSMVKSWILNSVNREIYGSILSFDDAAQIWNDLHNRFHMTNLPRTFQLVQQIQDL 171
Query: 143 QQESLTVTQFYTKHKAIWDEL---QDYLPQRSC---VCGENRVLLDYFQQEQIMHFLMSL 196
+Q S+ ++ +YT K + D L + +P C C + +I+ FL L
Sbjct: 172 RQGSMNLSTYYTTLKTLRDNLDGAEASVPCHCCKKSTCESQIFAKSNVNRGRIIKFLAGL 231
Query: 197 SDSYNQIKSHVLLMNPLPPMNRVFSMVLQEEKQREIAARSA---------DLNSAFAAQA 247
++ Y+ I+ +++ PLP + V++++ Q++ QR+ + A D+ A +
Sbjct: 232 NEKYSIIRGQIIMKKPLPDLAEVYNILDQDDSQRQFSNNVASAAFQVTKDDVQPGALASS 291
Query: 248 TNSGKSG------KKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSS 301
+N + G KKD+ + +CS+ G GH+ +RC+K HGYP G K KS +S
Sbjct: 292 SNMPQPGMLGAVQKKDK-KSICSHYGYTGHTSERCYKLHGYPVGWK-KGKSFYEKIAQAS 349
Query: 302 EVSGSSVP------------QDPP---------ITSSQYQQLLSLLTAQLA-------TS 333
+ S + P Q+ P ++ Q Q L++L ++QL T+
Sbjct: 350 QSSQAPKPNSAVTAQVTGNSQNTPAGLESLIGNMSKDQIQNLIALFSSQLQPASPVLNTA 409
Query: 334 PMPSSSTSEPLQI---PSPTDLKGFVFSASSDFSHKTSVWILDSGASCHVCFHLSSFESY 390
PM +S ++P I S G + + ++ +H T WI+DSGA+ HVC F +
Sbjct: 410 PMSTSHNNDPSGITFSSSTFSFIGILTVSETEMTHGT--WIVDSGATHHVCHVKDMFLNL 467
Query: 391 HSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIH 450
+ H ++LP T RV +G + + LIL NV Y+P F +NLLSVSAL + +
Sbjct: 468 DTSVQHHVNLPTGTTIRVGGVGNIAVNADLILKNVLYIPEFRLNLLSVSALTTDIGARVV 527
Query: 451 FFHKTFVIQE-NKLKTIG 467
F V+ + K TIG
Sbjct: 528 FDPTCCVVHDLTKGSTIG 545
>gb|AAG51258.1| Ty1/copia-element polyprotein [Arabidopsis thaliana]
gi|25403501|pir||H86486 protein Ty1/copia-element
polyprotein [imported] - Arabidopsis thaliana
Length = 1152
Score = 659 bits (1701), Expect = 0.0
Identities = 410/1165 (35%), Positives = 607/1165 (51%), Gaps = 82/1165 (7%)
Query: 21 SSNPFFLHHSDNPGLILVSQPLNGENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPL 80
S++P++LH SD+P +L LNGENY W + L K KLGFI+G +P+ D P
Sbjct: 21 SASPYYLHPSDHPHHVLTPMLLNGENYERWAKLTRNNLQAKQKLGFIDGTLTKPSSDSPD 80
Query: 81 LQSWIRNDHVVMSWILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLL 140
W++ + +++ W+ + + S+ +A+ +W+ L+ R+ N +R++QLK D++
Sbjct: 81 YPRWLQTNSMLVGWLYASLDPQVQKSISVVDNARVMWESLRTRYSVGNASRVHQLKYDIV 140
Query: 141 NLQQESLTVTQFYTKHKAIWDELQDYLPQRSCVCGE----NRVLLDYFQQEQIMH-FLMS 195
+Q+ T ++ K K +WD+L DY P +C C +RV + + +H FLM
Sbjct: 141 ACRQDGQTAANYFGKLKVMWDDLDDYEPLLTCCCNRPSCTHRVRQSQRRDHERIHQFLMG 200
Query: 196 LSDS-YNQIKSHVL---LMNPLPPMNRVFSMVLQEEKQREIAARSADLNSA--FAAQA-T 248
L + + ++++L + ++ ++S ++ EE+ I + A FA Q
Sbjct: 201 LDAAKFGTSRTNILGRLSRDDNISLDSIYSEIIAEERHLTITRSKEERVDAVGFAVQTGV 260
Query: 249 NSGKSGKKDRDRPLCSYCGKLGHSVDRCFKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSV 308
N+ S + + C++CG+ HS D CFK HG P K + D+S G
Sbjct: 261 NAIASVTRVNNMGPCTHCGRSNHSADTCFKLHGVPEWYTEK-------YGDTSSGRGRGR 313
Query: 309 PQDPPITSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTD---------LKGFVFSA 359
P + AQ + PSSS SE IP + LK ++
Sbjct: 314 SSTPRGRGRGHGNSYKANNAQTSH---PSSSASEFSDIPGVSKEAWSAIRNLLKQDTATS 370
Query: 360 SSDFSHKTSV--WILDSGASCHVCFHLSSFESYHSVRSHTISLPDNTKARVTHIGTVKLG 417
S S KT+ +++DSGAS H+ L + + + LP+ T GT+ LG
Sbjct: 371 SEKLSGKTNCVDFLIDSGASHHMTGFLDLLTEIYEIPHSVVVLPNAKHTIATKKGTLILG 430
Query: 418 NSLILHNVCYVPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKT-IGRGDTHNGLY 476
++ L +V +VP + L+SV+ LL F K VIQ+ K IG G NG+Y
Sbjct: 431 ANMKLTHVLFVPDLSCTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVY 490
Query: 477 YLHASSNNVFSASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLS-LLS 535
+L + SA+ K ALWH RLGHPS LS +L
Sbjct: 491 HLQRAEVVATSANVV-------------------KWKTNKALWHMRLGHPSSKVLSSVLP 531
Query: 536 STIHCKIPSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHR 595
S SS + +C VC AKQ R F + A F IH DVWGP+ + G
Sbjct: 532 SLEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFSFIHYDVWGPYKHASSCGAH 591
Query: 596 FFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKE-LQLTAF 654
+FLTIVDDHSR W L+ KSE + F M QF K +K VR++N E + L ++
Sbjct: 592 YFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMSLKSY 651
Query: 655 LEKQGTLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINL 714
++G +HQ SCV QQN VER+H+ +LNVARSLLFQ+ +P+ FW E + TA +LIN
Sbjct: 652 FAERGIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINR 711
Query: 715 IPTPNLHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGY 774
PTP L K+P +LY Q PSY LRVFG LCF+ KF R C+ VGY G
Sbjct: 712 TPTPILDGKTPYKILYSQPPSYASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQ 771
Query: 775 KGYKLYNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVP-- 832
KG+++Y++ ++ F +SRDVVF E IFPF + + ++D F P + + PYD
Sbjct: 772 KGWRIYDIESQIFFVSRDVVFQEDIFPFADKK----NKDTFSSPAAVIPSPILPYDDEFL 827
Query: 833 -------QPESVPVPSADHIPATPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYD 885
P + P+P+ + +P S I+ +P A PP +RR R R L DY
Sbjct: 828 DIYQIGDVPATNPLPAIIDVNDSPPSSPIITATPAAASPP-PLRRGLRQRQENVRLKDYQ 886
Query: 886 -----CPQQTTP--------HPLSTYYSYDKLTPSYKVYSVKVASHYEPTYFHQAIQYPE 932
C T +P++ Y S + +PS + + ++ P ++QAI+ E
Sbjct: 887 TYSAQCESTQTLSDNIGTCIYPMANYVSGEIFSPSNQHFLAAISMVDPPQTYNQAIREKE 946
Query: 933 WQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKGYTQ 992
W+ A+ E+ A+E TWD+ LP G IGSKWV+++K + +G+++R+KARLVA G Q
Sbjct: 947 WRNAVFFEVDALEDQGTWDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQ 1006
Query: 993 QNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQGYD 1052
+ GID+ TF+PV K+ TVR+LL +AA WEL Q+D++NAFL+GDL E++YMK P G+
Sbjct: 1007 KEGIDFTKTFAPVVKMQTVRLLLDVAAAKDWELHQMDVHNAFLHGDLKEDIYMKPPPGFK 1066
Query: 1053 VKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFVVLLV 1112
+L C+LKKSIYGLKQA R WF K S+ L + GF S DYSLFT G + ++V
Sbjct: 1067 TTDPSLVCKLKKSIYGLKQAPRCWFEKLSTSLLKFGFTQSKKDYSLFTSIRGSKVLHVIV 1126
Query: 1113 YVNDIIVSGPNATEIDSVKQLLKSA 1137
YV+D+++ G E ++ K L S+
Sbjct: 1127 YVDDVVICGKAVRENNTSKLALGSS 1151
>gb|AAU89779.1| gag-pol polyprotein-like [Solanum tuberosum]
Length = 1212
Score = 641 bits (1653), Expect = 0.0
Identities = 413/1251 (33%), Positives = 642/1251 (51%), Gaps = 114/1251 (9%)
Query: 44 GENYNSWNRSMMIALSVKNKLGFINGDFPRPADDDPLLQSWIRNDHVVMSWILNCVSKDI 103
G+NY+SW + ++ K G+I+G P P D L + W D VM+WIL + I
Sbjct: 15 GKNYSSWEFQFQLFVTGKELWGYIDGSDPAPTDATKLGE-WKIKDARVMTWILGSIDPLI 73
Query: 104 VSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYTKHKAIWDEL 163
V ++ ++ K +W LQ ++Q N R +QL+ ++ N Q L V +++ + +W E
Sbjct: 74 VLNLRPYKTVKAMWDYLQKVYNQDNSARRFQLEYEIANYSQGGLFVQDYFSGFQNLWAEF 133
Query: 164 QDY----LPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPLPPMNRV 219
D +P S V+ +Q + FLM L + I+S+++ +P P ++
Sbjct: 134 TDIVYAKIPTESL-----SVIQAVHEQSKRDQFLMKLRSDFESIRSNLMNRDPSPSLDVC 188
Query: 220 FSMVLQEEKQ---REIAARSADLNSAFAAQATNSGKSGKKDRDRPLCSYCGKLGHSVDRC 276
F +L+EE++ + + + D+ AFAAQ GK +D R C C + GH C
Sbjct: 189 FRELLREEQRLVTQNVFKKENDVTVAFAAQ----GKGKGRDMSRTQCYSCKEYGHIASNC 244
Query: 277 FKKHGYPPGLNFKNKSSAVHHVDSSEVSGSSVPQDPPITSSQYQQLLSLLTAQLATSPMP 336
KK F N H+ P P + ++ A++ S
Sbjct: 245 SKK--------FYNYCKQQGHIIKE------CPMRPQ------NRRINAFQARINGSTDD 284
Query: 337 SSSTSEPLQIPSPTDLKGFVFSASSDFSHK-----TSVWILDSGASCHVCFHLSSFESYH 391
+SS Q+ +P ++ + SA S + ++ WI+DSGAS H+ S ++
Sbjct: 285 NSSLG---QVLTPEMVQQMIVSAFSALGLQGNDVTSNFWIVDSGASNHMTNSTSILKNVR 341
Query: 392 SVRSHT-ISLPDNTKARVTHIGTVKLGNSLILHNVCYVPTFTVNLLSVSALLENPKYSIH 450
+ + I + + + +T +G + + NV P + +L+SV L++N ++
Sbjct: 342 KYQGPSQIQIANGSNLPITKVGDI----TPTFKNVFVSPKLSTSLISVGQLVDN-NCDVN 396
Query: 451 FFHKTFVIQENKLKTI-GRGDTHNGLYYLHASSNNVFSASTSPLSVLNSLCNQSVFPSHC 509
F ++Q+ TI +G L+ +H S V S + C
Sbjct: 397 FSRNGCLVQDQVSGTIIAKGPKVGRLFPIHFSIPPVLSFA-------------------C 437
Query: 510 NKSTCTAALWHARLGHPSYNRLSLLSST--IHCKIPSSINENVCPVCPLAKQKRLPFVSE 567
+ +WH RLGHP+ LS +S++ + K S+ C C L K K LPF +
Sbjct: 438 TSTASKTEVWHKRLGHPNSVVLSHISNSGLLGNKNKFSVASIDCSTCKLGKSKTLPFPNF 497
Query: 568 NHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWTFLIKHKSEAPLAIMAFF 627
A FD+IH DVWG + +H ++F+T +DD+SRFTW + ++ KSE F
Sbjct: 498 GSRATKCFDVIHSDVWGISPIISHAHFKYFMTFIDDYSRFTWVYFLRSKSEVFSMFKTFL 557
Query: 628 KMVQTQFGKVIKMVRTDNAKEL---QLTAFLEKQGTLHQFSCVERPQQNSVVERRHQQLL 684
++TQF IK++R+D+ E + FL +G + Q SC PQQN V ER+++ LL
Sbjct: 558 AYIETQFSTCIKLLRSDSGGEYMSYEFKKFLLDKGIVSQHSCPYTPQQNGVAERKNRHLL 617
Query: 685 NVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPSTLLYQQDPSYDHLRVFGC 744
+V R+LL +S +P +W E +STA +LIN +P+ L+ +SP LY Q+P+Y FGC
Sbjct: 618 DVTRTLLIESSVPSKYWVEALSTAVYLINRLPSKVLNLESPYFRLYHQNPNYSDFHTFGC 677
Query: 745 LCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTFHISRDVVFNESIFPFQN 804
+CF PS +K S ++ C +GY KG+ Y+ + F ISR+VVF E+ + F
Sbjct: 678 VCFVHLPPSQCNKLSVQSTKCAFMGYSTSQKGFICYDPCSHKFRISRNVVFFENQY-FFP 736
Query: 805 TRPYVYSQDPFLVPLP*VGLSVP------PYDVPQPESVPVPSADHIPATPLVSEIVAPS 858
T + S P L + S Y+ +P ++P P+ D P T E S
Sbjct: 737 TIVDLSSVSPLLPTFEDLSSSFKRFKPGFVYERRRP-TLPYPNTDPPPETAPQLESENSS 795
Query: 859 PDAIVPPLAVRRSTRVRHPPGYLADYDCPQQTTPHPLSTYYSYDKLTPSYKVYSVKVASH 918
+ P RRSTRV TP++ +S +++
Sbjct: 796 RSGPLEP--TRRSTRVSR----------------------------TPNWYGFSSTLSNI 825
Query: 919 YEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSI 978
P+ + QA ++ WQ+AM EL A++ N TWD+VS P IG KWVY +KLH DG++
Sbjct: 826 SVPSCYSQASKHECWQKAMEEELLALKENDTWDIVSCPSNVRPIGCKWVYSIKLHSDGTL 885
Query: 979 DRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGD 1038
DR+KARLV G Q+ G+DY +TF+PVAK+TTVR ++A+AA W L+Q D+ NAFL+GD
Sbjct: 886 DRYKARLVVLGNRQEYGVDYEETFAPVAKMTTVRTIIAIAASQNWSLYQKDVKNAFLHGD 945
Query: 1039 LFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSL 1098
L E++YMK P + C+LK+S+YGLKQA R WF KF S L Q F+ S +D SL
Sbjct: 946 LKEDIYMKPPPDLFSSPTSDVCKLKRSLYGLKQAPRAWFDKFRSTLLQFSFELSKYDSSL 1005
Query: 1099 FTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSA 1158
F + + + V+LLVYV+DII++G +++ I ++Q LK +F +KDLG L +FLGLE+ A
Sbjct: 1006 FLRKTSTSCVLLLVYVDDIIITGTDSSLITCLQQQLKDSFHMKDLGTLTYFLGLEVHNVA 1065
Query: 1159 TGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYL 1218
+G+ L+Q Y L+ G P++ N+K + G L D + +R+L+G L YL
Sbjct: 1066 SGVFLNQHKYTQDLISLAGLQVSSSVDTPLEMNVKYRREEGDLLPDPTIFRQLVGSLNYL 1125
Query: 1219 TISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFFLGQQP 1269
TI+RPDI+F + ++SQF+ P HL A+ H++RYL T +G FF P
Sbjct: 1126 TITRPDISFAVQQVSQFMQAPRHLHLVAVCHIIRYLLGTSTRGLFFPSGSP 1176
>gb|AAT40550.1| putative receptor kinase [Solanum demissum]
Length = 1358
Score = 638 bits (1645), Expect = 0.0
Identities = 422/1269 (33%), Positives = 659/1269 (51%), Gaps = 132/1269 (10%)
Query: 42 LNGENYNSWNRSMMIALS-------VKNKLGFINGDFPRPADDDPLLQSWIRNDHVVMSW 94
L NY SW S+ + + NK ++ +D W + D + S
Sbjct: 16 LGSSNYLSWASSVELWCKGQGVQDHLTNKAYEVDVKAKTSEEDAKAKAQWEKVDAQLCSL 75
Query: 95 ILNCVSKDIVSSVICCRSAKEIWQDLQDRFHQPNGTRIYQLKKDLLNLQQESLTVTQFYT 154
+ + ++ ++ +W+ + + + +R Y + L NL+++ ++ +
Sbjct: 76 LWRSIDFKLMPLFRPFQTCYTVWEKAR-ALYTNDISRFYDVISRLTNLKKQESDMSTYLG 134
Query: 155 KHKAIWDELQDYLPQRSCVCGENRVLLDYFQQEQIMHFLMSLSDSYNQIKSHVLLMNPLP 214
+ +A+ +E +P + V + ++ Q ++ L L ++ ++ +L +P
Sbjct: 135 QVQAVMEEFDTLMPVTTNVEKQQ----EHRQTLFLVLTLAGLPPDHDSVRDQILASPTVP 190
Query: 215 PMNRVFSMVLQ---EEKQREIAARSADLNSAFAAQA---------TNSGKSGKKDRDRPL 262
++ +FS +L+ + +++ + D +S A+Q N G+ + R
Sbjct: 191 TIDELFSRLLRLAAPPSHKVVSSPTVD-SSILASQTFEKRTYQSMENRRGGGRFGKPRSK 249
Query: 263 CSYCGKLGHSVDRCFKKHGYPPGLN----------FKNKSSAVHHVDSSEVSGSSVPQDP 312
CS+C K GH+ D C+ HG PP + +N++S S V+ + P P
Sbjct: 250 CSHCHKPGHTRDICYILHGPPPSYDPIVLKEYNEFLRNRASKQ---TSPPVAYGAQPNQP 306
Query: 313 P----ITSSQYQQLLSLLTAQLATSPMPSSSTSEPLQIPSPTDLKGFVFSASSDFSHKTS 368
I ++Y + L A TSP S + + G F+ S S
Sbjct: 307 SNNAHIAQTEYDEFLQY-RANKQTSPQVVSVAQPDVSVA------GNSFACVSQ-SSTLG 358
Query: 369 VWILDSGASCHVCFHLSSFESY-HSVRSHTISLPDNTKARVTHIGTVKLGNSLILHNVCY 427
W++DSGAS H+ + S +S I+L + + + +G K +S+ L +V Y
Sbjct: 359 TWVMDSGASDHISGNKSLLSDIVYSQSLPAITLANGIQTKPKGVGKAKPLSSVTLDSVLY 418
Query: 428 VPTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKL-KTIGRGDTHNGLYYLHASSNNVF 486
VP NL SVS L + SI FF F++Q+ + IG G GLYYL +S
Sbjct: 419 VPGSPFNLASVSRLTKALHCSITFFDDFFLMQDRSTGQMIGTGHESQGLYYLTSS----- 473
Query: 487 SASTSPLSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSSTIHCKIPSSI 546
NSL S+ T + L H RLGH S ++L + ++ SS+
Sbjct: 474 ----------NSLAACSI--------TDSPDLIHKRLGHSSLSKLQKMVPSL-----SSL 510
Query: 547 NENVCPVCPLAKQKRLPFVSENHFANHS-FDLIHCDVWGPFHVPTHVGHRFFLTIVDDHS 605
+ C C L K R F + S F L+H D+WGP V + +G R+F++ +DD+S
Sbjct: 511 STLDCESCQLGKHTRATFSRSTEGRSESIFSLVHSDIWGPSRVSSTLGFRYFVSFIDDYS 570
Query: 606 RFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKEL---QLTAFLEKQGTLH 662
+ TW FL+K +SE +FF +Q QFG I+ R+DNA E Q F+ QG +H
Sbjct: 571 KCTWVFLMKDRSELFSIFKSFFAEIQNQFGVSIRTFRSDNALEYLSSQFREFMTHQGIIH 630
Query: 663 QFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHN 722
Q +C PQQN V ER+++ L+ AR+LL +S++PL FWG+ + T+ +LIN +P+ ++ N
Sbjct: 631 QTTCPYTPQQNGVAERKNRHLIETARTLLLESNVPLRFWGDAVLTSCYLINRMPSSSIQN 690
Query: 723 KSPSTLLYQQDPSYD-HLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYN 781
+ P ++L+ Q Y RVFG CF L + K +PRA+ CV +GY + KGY+ Y+
Sbjct: 691 QVPHSILFPQSHLYPIPPRVFGSTCFVHNLAPGKDKLAPRALKCVFLGYSRVQKGYRCYS 750
Query: 782 LTTKTFHISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESVPVPS 841
+ +S DV F ES +PY S + P V + +P P+ +PVP+
Sbjct: 751 HDLHRYLMSADVTFFES-------QPYYTSSNH-----PDVSMVLPI-----PQVLPVPT 793
Query: 842 ADHIPATPLVSEIVAPSPDAIVPPLAVRRSTRVRHPPGYLADYDCPQQTTPHPLSTYYSY 901
V V + +VPPL T R P L D P P +
Sbjct: 794 --------FVESTVTSTSPVVVPPLL----TYHRRPRPTLVPDDSCHAPDPAPTA----- 836
Query: 902 DKLTPSYKVYSVKVASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHE 961
D PS + K +A+ + W+QAM E++A+ + TW++VSLP GK
Sbjct: 837 DLPPPSQPLALQK----------GEALSHSGWRQAMVDEMSALHKSGTWELVSLPAGKST 886
Query: 962 IGSKWVYKLKLHPDGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMY 1021
+G +WVY +K+ PDG +DR KARLVAKGYTQ G+DY DTF+PVAKI +VR+ L++AA+
Sbjct: 887 VGCRWVYAVKIGPDGQVDRLKARLVAKGYTQIFGLDYSDTFAPVAKIASVRLFLSMAAVR 946
Query: 1022 KWELFQLDINNAFLNGDLFEEVYMKIPQGYDVKGEN--LTCRLKKSIYGLKQASRQWFAK 1079
W L QLDI NAFL+GDL EEVYM+ P G+ +GE+ L CRL++S+YGLKQ+ R WF K
Sbjct: 947 HWPLHQLDIKNAFLHGDLEEEVYMEQPPGFVAQGESSSLVCRLRRSLYGLKQSPRAWFGK 1006
Query: 1080 FSSVLTQHGFQHSYHDYSLFTKGSGDT-FVVLLVYVNDIIVSGPNATEIDSVKQLLKSAF 1138
FS+V+ + G S D+S+F + S + + L+VYV+DI+++G + I +KQ L F
Sbjct: 1007 FSTVIQEFGMTRSGADHSVFYRHSAPSRCIYLVVYVDDIVITGNDQDGITDLKQHLFKHF 1066
Query: 1139 KLKDLGKLKFFLGLEIAYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDT 1198
+ KDLG+LK+FLG+E+A S +GI +SQR YAL +L +TG CRP PMDPN+KL
Sbjct: 1067 QTKDLGRLKYFLGIEVAQSRSGIVISQRKYALDILEETGMMGCRPVDTPMDPNVKLLPGQ 1126
Query: 1199 GPELADSSQYRRLIGRLLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTP 1258
G L++ +YRRL+G+L YLT++RPDI+F ++ +SQF++ P +H +A+ +LRY+K+ P
Sbjct: 1127 GEPLSNPERYRRLVGKLNYLTVTRPDISFPVSVVSQFMTSPCDSHWEAVVRILRYIKSAP 1186
Query: 1259 GQGFFFLGQ 1267
G+G F Q
Sbjct: 1187 GKGLLFEDQ 1195
>gb|AAP53905.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37534632|ref|NP_921618.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1688
Score = 583 bits (1504), Expect = e-164
Identities = 360/955 (37%), Positives = 517/955 (53%), Gaps = 87/955 (9%)
Query: 370 WILDSGASCHVCFHLSSFESYHSVRSH-TISLPDNTKARVTHIGTVKLGNSLILHNVCYV 428
WILDSGAS H+ F S S V++ T+ + T +VTH G++ + NV V
Sbjct: 184 WILDSGASFHMSFDDSWLTSCRLVKNGATVHTANGTLCKVTHQGSIS-SPQFTVPNVSLV 242
Query: 429 PTFTVNLLSVSALLENPKYSIHFFHKTFVIQENKLKTIGRGDTHN---GLYYLHASSNNV 485
P ++NL+SV L + + FV + IG G GLY L + S +
Sbjct: 243 PKLSMNLISVGQLTDTNCFVGFDDTSCFVQDRHTGAVIGTGHRQKRSCGLYILDSLS--L 300
Query: 486 FSASTSPLSVLNSLCNQSV--FPSHCNKSTCTAALWHARLGHPSYNRLS-LLSSTIHCKI 542
S+ST+ SV + +C+ + FP WH RLGH +RL+ L++ + +
Sbjct: 301 PSSSTNTPSVYSPMCSTACKSFPQ-----------WHHRLGHLCGSRLATLINQGVLGSV 349
Query: 543 PSSINENVCPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVD 602
P VC C L KQ +LP+ S ++ FDL+H DVWG P+ GH +++ VD
Sbjct: 350 PVDTTF-VCKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKGGHNYYVIFVD 408
Query: 603 DHSRFTWTFLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKELQLTAFLE---KQG 659
D+SR+TW + +KH+S+ +F +M+ TQF I++ R+D+ E AF E QG
Sbjct: 409 DYSRYTWIYFMKHRSQLISIYQSFAQMIHTQFSSAIRIFRSDSGGEYMSNAFREFLVSQG 468
Query: 660 TLHQFSCVERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPN 719
TL Q SC QN V ER+H+ ++ AR+LL S +P FW E ISTA +LIN+ P+ +
Sbjct: 469 TLPQLSCPGAHAQNGVAERKHRHIIETARTLLIASFVPAHFWAEAISTAVYLINMQPSSS 528
Query: 720 LHNKSPSTLLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKL 779
L +SP +L+ P YDHLRVFGC C+ P R K + ++V CV +GY +KGY+
Sbjct: 529 LQGRSPGEVLFGSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSLEHKGYRC 588
Query: 780 YNLTTKTFHISRDVVFNESIFPFQNTRPYVYSQ--DPFLVPLP*VGLSVPPYDVPQPESV 837
Y+ + + ISRDV F+E+ +P+ YS P L +PP +P PES+
Sbjct: 589 YDPSARRIRISRDVTFDEN-------KPFFYSSTNQPSSPENSISFLYLPP--IPSPESL 639
Query: 838 P--------------VPSADHIPATPLVSEIVAPSPDAIVPPLA-VRRSTRVRHPPGY-- 880
P VPS ++P P +PSP + PP + + S+ H P
Sbjct: 640 PSSPITPSPSPIPPSVPSPTYVPPPP-----PSPSPSPVSPPPSHIPASSSPPHVPSTIT 694
Query: 881 ------------------------LADYDCP-QQTTPHPLSTYYSYDKL-TPSYKVYSVK 914
L D C ++P P + D L P+ + V
Sbjct: 695 LDTFPFHYSRRPKIPNESQPSQPTLEDPTCSVDDSSPAPRYNLRARDALRAPNRDDFVVG 754
Query: 915 VASHYEPTYFHQAIQYPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHP 974
V +EP+ + +AI P W+ AM ELAA+E TWDVV LP I KWVYK+K
Sbjct: 755 VV--FEPSTYQEAIVLPHWKLAMSEELAALERTNTWDVVPLPSHAVPITCKWVYKVKTKS 812
Query: 975 DGSIDRHKARLVAKGYTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAF 1034
DG ++R+KARLVA+G+ Q +G DY +TF+PVA +TTVR L+A+AA W + Q+D+ NAF
Sbjct: 813 DGQVERYKARLVARGFQQAHGRDYDETFAPVAHMTTVRTLIAVAATRSWTISQMDVKNAF 872
Query: 1035 LNGDLFEEVYMKIPQGYDVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYH 1094
L+GDL EEVYM P G + ++ RL++++YGLKQA R WFA+FSSV+ GF S H
Sbjct: 873 LHGDLHEEVYMHPPPGVEAPPGHVF-RLRRALYGLKQAPRAWFARFSSVVLAAGFSPSDH 931
Query: 1095 DYSLFTKGSGDTFVVLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEI 1154
D +LF S +LL+YV+D++++G + I VK L F + DLG L +FLG+E+
Sbjct: 932 DPALFIHTSSRGRTLLLLYVDDMLITGDDLEYIAFVKGKLSEQFMMSDLGPLSYFLGIEV 991
Query: 1155 AYSATGISLSQRAYALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGR 1214
+ G LSQ Y LL +G TD R T+ PM+ +++L S G L D S+YR L+G
Sbjct: 992 TSTVDGYYLSQHRYIEDLLAQSGLTDSRTTTTPMELHVRLRSTDGTPLDDPSRYRHLVGS 1051
Query: 1215 LLYLTISRPDIAFTMNKLSQFLSKPTTTHLDALHHLLRYLKTTPGQGFFFLGQQP 1269
L+YLT++RPDIA+ ++ LSQF+S P + H L +LRYL+ T Q F+ P
Sbjct: 1052 LVYLTVTRPDIAYAVHILSQFVSAPISVHYGHLLRVLRYLRGTTTQCLFYAASSP 1106
>ref|NP_916434.1| putative gag/pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1090
Score = 521 bits (1343), Expect = e-146
Identities = 318/867 (36%), Positives = 457/867 (52%), Gaps = 72/867 (8%)
Query: 434 NLLSVSALLENPKYSIHFFHKTFVIQENKLK-TIGRGDTHNGLYYLHASSNNVFSASTSP 492
NLLSV + K SI F F +++ + + I R ++ LY L A++ P
Sbjct: 60 NLLSVRQFTRDNKCSIEFDEFGFSVKDLQTRRVILRCNSRGELYTLPAAT---------P 110
Query: 493 LSVLNSLCNQSVFPSHCNKSTCTAALWHARLGHPSYNRLSLLSS--TIHCKIPSSINENV 550
S + L S + LWH RLGHP + L + +I C + I+ ++
Sbjct: 111 SSAAHGLLATS------------STLWHCRLGHPGPAAIHGLRNIASISC---NKIDTSL 155
Query: 551 CPVCPLAKQKRLPFVSENHFANHSFDLIHCDVWGPFHVPTHVGHRFFLTIVDDHSRFTWT 610
C C L K RLPF + + + F+L+HCDVW + T G +++L ++DD S F WT
Sbjct: 156 CHACQLGKHTRLPFHNSSSRTSVPFELVHCDVWTSPVMSTS-GFKYYLVVLDDFSHFCWT 214
Query: 611 FLIKHKSEAPLAIMAFFKMVQTQFGKVIKMVRTDNAKEL---QLTAFLEKQGTLHQFSCV 667
FL++ KS+ I+ F + V TQFG +K + DN +E +T FL +GT + SC
Sbjct: 215 FLLRLKSDVHRHIVEFVEYVSTQFGLPLKSFQADNGREFVNTAITTFLASRGTQLRLSCP 274
Query: 668 ERPQQNSVVERRHQQLLNVARSLLFQSHMPLVFWGECISTATHLINLIPTPNLHNKSPST 727
QN ER + + N R+LL Q+ MP +W E ++TAT+L+N P+ ++H P
Sbjct: 275 YTSPQNGKAERMLRTINNSIRTLLIQASMPPSYWAEALATATYLLNRRPSSSIHQSLPFQ 334
Query: 728 LLYQQDPSYDHLRVFGCLCFSSTLPSTRHKFSPRAVPCVLVGYKQGYKGYKLYNLTTKTF 787
LL++ P + HLRVFGCLC+ + +T HK SPR+ CV +GY +KGY+ +L+T
Sbjct: 335 LLHRTIPDFSHLRVFGCLCYPNLSATTPHKLSPRSTACVFLGYPTSHKGYRCLDLSTHRI 394
Query: 788 HISRDVVFNESIFPFQNTRPYVYSQDPFLVPLP*VGLSVPPYDVPQPESVPVPSADHI-- 845
ISR VVF+ES FPF T P S D L L P +V QP + V + +
Sbjct: 395 IISRHVVFDESQFPFAATPPAASSFDFLLQGLS--PADAPSLEVEQPRPLTVAPSTEVEQ 452
Query: 846 PATPLVSE--------------------IVAPSPDAIVPPLAVRRSTRV---RH------ 876
P PL S + S DA P A R ST V RH
Sbjct: 453 PYLPLPSRRLSAGTVTVASEAPSAGAPLVGTSSADATPPGSATRASTIVSPFRHVYTRRP 512
Query: 877 -----PPGYLADYDCPQQTTPHPLSTYYSYDKLTPSYKVY--SVKVASHYEPTYFHQAIQ 929
P A + PH + T L P ++ + + A+ P +H A+
Sbjct: 513 VTTVPPSSSTAVTNAVAAPQPHSMVTRSQSGSLRPVDRLTYTATQAAASPVPANYHSALA 572
Query: 930 YPEWQQAMRTELAAMEANQTWDVVSLPPGKHEIGSKWVYKLKLHPDGSIDRHKARLVAKG 989
P W+ AM E + N TW +VS PP + KW++K K H DGS+ R+KAR V +G
Sbjct: 573 DPNWRAAMADEYKELVDNGTWRLVSRPPRANIATGKWIFKHKFHSDGSLARYKARWVVRG 632
Query: 990 YTQQNGIDYMDTFSPVAKITTVRMLLALAAMYKWELFQLDINNAFLNGDLFEEVYMKIPQ 1049
Y+QQ+GIDY +TFSPV K+ T+R++L++AA W + QLD+ NAFL+G L E VY + P
Sbjct: 633 YSQQHGIDYDETFSPVVKLATIRVVLSIAASRAWPIHQLDVKNAFLHGHLKETVYCQQPS 692
Query: 1050 GY-DVKGENLTCRLKKSIYGLKQASRQWFAKFSSVLTQHGFQHSYHDYSLFTKGSGDTFV 1108
G+ D + C L+KS+YGLKQA R W+ +F++ + Q GF S D SLF GD
Sbjct: 693 GFVDPTAPDAVCLLQKSLYGLKQAPRAWYQRFATYIRQMGFMPSASDTSLFVYKDGDRIA 752
Query: 1109 VLLVYVNDIIVSGPNATEIDSVKQLLKSAFKLKDLGKLKFFLGLEIAYSATGISLSQRAY 1168
LL+YV+DII++ T + + L S F + DLG L FFLG+ + S G+ LSQR Y
Sbjct: 753 YLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLGISVKRSPDGLFLSQRQY 812
Query: 1169 ALSLLHDTGFTDCRPTSLPMDPNLKLSSDTGPELADSSQYRRLIGRLLYLTISRPDIAFT 1228
A+ LL G +C TS P+D + KLS+ G +AD S YR + G L YLT++RPD+A+
Sbjct: 813 AVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRSIAGALQYLTLTRPDLAYA 872
Query: 1229 MNKLSQFLSKPTTTHLDALHHLLRYLK 1255
+ ++ F+ P HL + +LRY+K
Sbjct: 873 VQQVCLFMHDPREPHLALVKRILRYVK 899
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,500,245,861
Number of Sequences: 2540612
Number of extensions: 109234393
Number of successful extensions: 288634
Number of sequences better than 10.0: 2121
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 527
Number of HSP's that attempted gapping in prelim test: 279858
Number of HSP's gapped (non-prelim): 4573
length of query: 1427
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1286
effective length of database: 505,134,102
effective search space: 649602455172
effective search space used: 649602455172
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0110a.16