BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0110a.15
(184 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97139.1| unnamed protein product [Arabidopsis thaliana] g... 58 1e-07
emb|CAB81433.1| putative protein [Arabidopsis thaliana] gi|49721... 55 9e-07
gb|AAO42845.1| At5g52990 [Arabidopsis thaliana] 55 9e-07
gb|AAO41928.1| unknown protein [Arabidopsis thaliana] gi|5025358... 44 0.003
ref|NP_174614.1| zinc finger (C3HC4-type RING finger) family pro... 44 0.003
ref|NP_692872.1| GTP-binding protein [Oceanobacillus iheyensis H... 43 0.004
emb|CAB78140.1| putative protein [Arabidopsis thaliana] gi|45389... 40 0.041
ref|YP_175177.1| GTP-binding protein Era, Era/TrmE family [Bacil... 37 0.20
ref|XP_483759.1| putative vesicle-associated membrane protein 72... 37 0.20
ref|YP_079867.1| GTP-binding protein [Bacillus licheniformis ATC... 37 0.35
ref|NP_390407.1| GTP-binding protein [Bacillus subtilis subsp. s... 37 0.35
ref|ZP_00357282.1| hypothetical protein Chlo02003193 [Chloroflex... 36 0.45
ref|YP_148341.1| GTP-binding protein [Geobacillus kaustophilus H... 34 1.7
emb|CAB71004.1| synaptobrevin-like protein [Arabidopsis thaliana... 34 1.7
gb|AAM05967.1| predicted protein [Methanosarcina acetivorans str... 34 1.7
gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579] ... 34 2.3
gb|EAL33628.1| GA18599-PA [Drosophila pseudoobscura] 34 2.3
ref|YP_021170.1| gtp-binding protein era [Bacillus anthracis str... 33 2.9
emb|CAC49951.1| putative 3-hydroxyacyl-CoA dehydrogenase protein... 33 2.9
ref|YP_038355.1| GTP-binding protein [Bacillus thuringiensis ser... 33 2.9
>dbj|BAA97139.1| unnamed protein product [Arabidopsis thaliana]
gi|15237326|ref|NP_200111.1| vesicle-associated membrane
protein-related [Arabidopsis thaliana]
Length = 272
Score = 57.8 bits (138), Expect = 1e-07
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 13 HSLFSHTVNNRTYTFLI-DPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETL-DSVND-S 69
HS+FSHTV+ +TYTF I D F+YF+I D K ++ LNR+RS++++ + D +D
Sbjct: 46 HSMFSHTVHKKTYTFAIDDDSFVYFSISDESMEKPESFWVLNRLRSAIEDLIKDGGSDVE 105
Query: 70 TAPPPLS--LQTPFDLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSA 120
T P+S LQ D + EI+ + D +VG + + +DS+
Sbjct: 106 TLINPVSHCLQLKLDPVFAEIVGVVDLELLDMDLVGSPRSVARESRNPSIDSS 158
>emb|CAB81433.1| putative protein [Arabidopsis thaliana] gi|4972115|emb|CAB43972.1|
putative protein [Arabidopsis thaliana]
gi|22655346|gb|AAM98265.1| At4g27840/T27E11_80
[Arabidopsis thaliana] gi|17978989|gb|AAL47455.1|
AT4g27840/T27E11_80 [Arabidopsis thaliana]
gi|15234299|ref|NP_194513.1| expressed protein
[Arabidopsis thaliana] gi|7487475|pir||T09023
hypothetical protein T27E11.80 - Arabidopsis thaliana
Length = 260
Score = 55.1 bits (131), Expect = 9e-07
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 13 HSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRS---SLKETLDSVNDS 69
HS+ SHTV+ RTY +ID F YFAI D KS+++ NR++S SL E + +
Sbjct: 46 HSMISHTVHKRTYALIIDGLFSYFAILDEVVAKSESVWLFNRLKSATESLMEDGSTADSL 105
Query: 70 TAPPPLSLQTPFDLILQEILHLDDGNRSPPAVVGISHDEGLK 111
P LQ+ D + EI A +G +H++ L+
Sbjct: 106 DNPTQHCLQSKLDPVFAEI-----------AAIGGNHNKDLE 136
>gb|AAO42845.1| At5g52990 [Arabidopsis thaliana]
Length = 272
Score = 55.1 bits (131), Expect = 9e-07
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 13 HSLFSHTVNNRTYTFLI-DPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETL-DSVND-S 69
HS+FSHTV+ +TYTF I D F+YF+I K ++ LNR+RS++++ + D +D
Sbjct: 46 HSMFSHTVHKKTYTFAIDDDSFVYFSISGESMEKPESFWVLNRLRSAIEDLIKDGGSDVE 105
Query: 70 TAPPPLS--LQTPFDLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSA 120
T P+S LQ D + EI+ + D +VG + + +DS+
Sbjct: 106 TLINPVSHCLQLKLDPVFAEIVGVVDLELLDMDLVGSPRSVARESRNPSIDSS 158
>gb|AAO41928.1| unknown protein [Arabidopsis thaliana] gi|50253582|gb|AAT71993.1|
At1g33480 [Arabidopsis thaliana]
Length = 255
Score = 43.5 bits (101), Expect = 0.003
Identities = 23/77 (29%), Positives = 37/77 (47%)
Query: 13 HSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDSTAP 72
H + T +T+ FL+ F+YFAI D KS L FL ++R LKE + +
Sbjct: 47 HKWYFETRGKKTFGFLMKDDFVYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFS 106
Query: 73 PPLSLQTPFDLILQEIL 89
+S D I++ ++
Sbjct: 107 GSISFSNVQDQIVRRLI 123
>ref|NP_174614.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis
thaliana] gi|12322389|gb|AAG51221.1| unknown protein;
73879-71181 [Arabidopsis thaliana]
gi|25403193|pir||F86458 unknown protein, 73879-71181
[imported] - Arabidopsis thaliana
Length = 508
Score = 43.5 bits (101), Expect = 0.003
Identities = 23/77 (29%), Positives = 37/77 (47%)
Query: 13 HSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDSTAP 72
H + T +T+ FL+ F+YFAI D KS L FL ++R LKE + +
Sbjct: 300 HKWYFETRGKKTFGFLMKDDFVYFAIVDDVFKKSSVLDFLEKLRDELKEANKKNSRGSFS 359
Query: 73 PPLSLQTPFDLILQEIL 89
+S D I++ ++
Sbjct: 360 GSISFSNVQDQIVRRLI 376
>ref|NP_692872.1| GTP-binding protein [Oceanobacillus iheyensis HTE831]
gi|22777635|dbj|BAC13907.1| GTP-binding protein
(Era/TrmE family) [Oceanobacillus iheyensis HTE831]
Length = 300
Score = 43.1 bits (100), Expect = 0.004
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKG-LAAAAATEL 140
+LI +++LHL V I + E + +K+++ AT++ R+S KG L T L
Sbjct: 194 ELIREKVLHLTKEEVPHSIAVVIENIEKNENEKLLIQ-ATIVTERSSQKGILIGKQGTML 252
Query: 141 VELEKDAVE--EALVGSAIQIEGFRRVWLDLRSRLSLLHE 178
+ K A EAL+GS + +E + +V D R+R + LHE
Sbjct: 253 KNIGKQARRDIEALLGSKVYLELWIKVKKDWRNRQNQLHE 292
>emb|CAB78140.1| putative protein [Arabidopsis thaliana]
gi|4538981|emb|CAB39769.1| putative protein
[Arabidopsis thaliana] gi|28416649|gb|AAO42855.1|
At4g10170 [Arabidopsis thaliana]
gi|15234957|ref|NP_192755.1| synaptobrevin-related
family protein [Arabidopsis thaliana]
gi|42572861|ref|NP_974527.1| synaptobrevin-related
family protein [Arabidopsis thaliana]
gi|7486316|pir||T04067 hypothetical protein F28M11.90 -
Arabidopsis thaliana
Length = 254
Score = 39.7 bits (91), Expect = 0.041
Identities = 18/49 (36%), Positives = 26/49 (52%)
Query: 13 HSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKE 61
H+ + T+ R + FLI F+YFAI D +S L FL +R K+
Sbjct: 45 HTWYFETIGKRRFGFLIGDGFVYFAIVDEVLKRSSVLKFLEHLRDEFKK 93
>ref|YP_175177.1| GTP-binding protein Era, Era/TrmE family [Bacillus clausii KSM-K16]
gi|56909689|dbj|BAD64216.1| GTP-binding protein Era,
Era/TrmE family [Bacillus clausii KSM-K16]
Length = 303
Score = 37.4 bits (85), Expect = 0.20
Identities = 31/101 (30%), Positives = 52/101 (50%), Gaps = 6/101 (5%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKGLA----AAAA 137
+LI +++LHL P +V + + V ATVI R+S KG+ A
Sbjct: 197 ELIREKVLHLTK-EEIPHSVAVVIEQIKKRDNGKVYVGATVIVERSSQKGIIIGKHGAML 255
Query: 138 TELVELEKDAVEEALVGSAIQIEGFRRVWLDLRSRLSLLHE 178
E+ +L + +E AL+GS++ +E + +V D R+R S L +
Sbjct: 256 KEVGQLARSDIE-ALLGSSVYLELWVKVQKDWRNRPSQLKD 295
>ref|XP_483759.1| putative vesicle-associated membrane protein 725 (AtVAMP725) [Oryza
sativa (japonica cultivar-group)]
gi|51965098|ref|XP_507333.1| PREDICTED P0562A06.8 gene
product [Oryza sativa (japonica cultivar-group)]
gi|45736098|dbj|BAD13129.1| putative vesicle-associated
membrane protein 725 (AtVAMP725) [Oryza sativa (japonica
cultivar-group)]
Length = 241
Score = 37.4 bits (85), Expect = 0.20
Identities = 49/184 (26%), Positives = 74/184 (39%), Gaps = 26/184 (14%)
Query: 4 PKKGSKGSTHSLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETL 63
P SK ST+S HT N FL+D F++ + D +S FL+R++ +
Sbjct: 42 PPNTSK-STYSCDGHTFN-----FLVDRGFVFLVVADEAVGRSVPFVFLDRVKEDFMQRY 95
Query: 64 DSVNDSTAPPPLSLQTPFDLILQE----ILHLDDGNRSP----PAVVGISHDEGLKKKKM 115
S D PL+ D L E I + D P + I+H E + K
Sbjct: 96 GSSIDEEGQHPLADDADDDDFLLEDRFSIAYNLDREFGPRLKDHMLYCINHPEEISK--- 152
Query: 116 VVDSATVIANRTSAKGLAAAAATELVELEKDAVEEALVGSA----IQIEGFRRVWLDLRS 171
+ V A+ T KG+ ++ LE+ E LVG Q + F R +LR
Sbjct: 153 ---LSKVKAHLTEVKGIMMDNIEKI--LERGEKIELLVGKTETLQSQADSFHRHGRELRR 207
Query: 172 RLSL 175
++ L
Sbjct: 208 KMWL 211
>ref|YP_079867.1| GTP-binding protein [Bacillus licheniformis ATCC 14580]
gi|52004287|gb|AAU24229.1| GTP-binding protein [Bacillus
licheniformis ATCC 14580] gi|52786455|ref|YP_092284.1|
Era [Bacillus licheniformis ATCC 14580]
gi|52348957|gb|AAU41591.1| Era [Bacillus licheniformis
DSM 13]
Length = 301
Score = 36.6 bits (83), Expect = 0.35
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKGLAAAAATELV 141
+LI +++LHL V I + + + V SAT++ R S KG+ L+
Sbjct: 195 ELIREKVLHLTREEIPHSIAVSIESIQERENGSVYV-SATIVVERDSQKGIVIGKRGSLL 253
Query: 142 -ELEKDAVE--EALVGSAIQIEGFRRVWLDLRSRLSLLHESRSEKD 184
E+ K A EAL+GS++ +E + +V D R+++S L + +D
Sbjct: 254 KEIGKRARTDIEALLGSSVFLELWVKVQKDWRNKMSQLRDFGFRED 299
>ref|NP_390407.1| GTP-binding protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2634961|emb|CAB14458.1| GTP-binding protein [Bacillus
subtilis subsp. subtilis str. 168]
gi|606745|gb|AAB59994.1| Bex gi|7438450|pir||B69593
GTP-binding protein bex - Bacillus subtilis
gi|1168646|sp|P42182|ERA_BACSU GTP-binding protein era
homolog (Bex protein) gi|1303826|dbj|BAA12482.1| YqfH
[Bacillus subtilis]
Length = 301
Score = 36.6 bits (83), Expect = 0.35
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKGLAAAAATELV 141
+LI +++LHL V I +G + V +AT++ R S KG+ L+
Sbjct: 195 ELIREKVLHLTREEIPHSIAVAIESIKGQDNGSVHV-AATIVVERDSQKGIVIGKKGSLL 253
Query: 142 -ELEKDAVE--EALVGSAIQIEGFRRVWLDLRSRLSLLHESRSEKD 184
E+ K A EAL+GS + +E + +V D R+++S L + ++D
Sbjct: 254 KEVGKRARADIEALLGSRVYLELWVKVQKDWRNKMSQLRDFGFKED 299
>ref|ZP_00357282.1| hypothetical protein Chlo02003193 [Chloroflexus aurantiacus]
Length = 578
Score = 36.2 bits (82), Expect = 0.45
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 17 SHTVNNRT-YTFLIDP-PFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDSVNDSTAPPP 74
++T+NN T Y D PF FA+ T+ F N+ + + + NDST
Sbjct: 191 TNTINNVTIYASESDTTPFAAFAL------ARNTVVFANKAEN-IATLVQQENDST---- 239
Query: 75 LSLQTPFDLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSAT-VIANRTSAKGLA 133
L+ T F ++Q + G+R A + IS D + +++S+T + T A
Sbjct: 240 LARNTSFQTVIQAL----PGDRM--ATIYISGDTIARLTDALLESSTDTVPTATLNDAQA 293
Query: 134 AAAATELVELEKDAVEEALVGSAIQIEGFRRVWLDLRSRLSLLHESRS 181
AA A + V L +E L A+ + R+ DLR R++ L + S
Sbjct: 294 AAQALQGVGLTMAVIERGLRFDAVSVFDQNRLGNDLRERIAQLRPAVS 341
>ref|YP_148341.1| GTP-binding protein [Geobacillus kaustophilus HTA426]
gi|56380865|dbj|BAD76773.1| GTP-binding protein
[Geobacillus kaustophilus HTA426]
Length = 302
Score = 34.3 bits (77), Expect = 1.7
Identities = 29/106 (27%), Positives = 48/106 (44%), Gaps = 3/106 (2%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKGLAAAAATELV 141
+LI ++ LHL V + E + V SA ++ R S KG+ ++
Sbjct: 195 ELIREKALHLTREEVPHSIAVVVERIERREGSPTVYISAVIVVERDSQKGIIIGKQGRML 254
Query: 142 E---LEKDAVEEALVGSAIQIEGFRRVWLDLRSRLSLLHESRSEKD 184
+ A EAL+GS + +E + +V D R+RLS L + +D
Sbjct: 255 KEIGQRARADIEALLGSRVFLELWVKVQKDWRNRLSQLRDFGFRED 300
>emb|CAB71004.1| synaptobrevin-like protein [Arabidopsis thaliana]
gi|45773850|gb|AAS76729.1| At3g54300 [Arabidopsis
thaliana] gi|15232475|ref|NP_190998.1| synaptobrevin
family protein [Arabidopsis thaliana]
gi|44681344|gb|AAS47612.1| At3g54300 [Arabidopsis
thaliana] gi|27805764|sp|Q9M376|V727_ARATH
Vesicle-associated membrane protein 727 (AtVAMP727)
gi|11358869|pir||T47589 synaptobrevin-like protein -
Arabidopsis thaliana
Length = 240
Score = 34.3 bits (77), Expect = 1.7
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 14 SLFSHTVNNRTYTFLIDPPFIYFAIFDHRHTKSQTLTFLNRIRSSLKETLDS--VNDSTA 71
S ++++ + T+ FL+D F++ + D +S FL R++ K+ ++ ND
Sbjct: 44 SKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERH 103
Query: 72 P 72
P
Sbjct: 104 P 104
>gb|AAM05967.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|20091412|ref|NP_617487.1| hypothetical protein MA2586
[Methanosarcina acetivorans C2A]
Length = 678
Score = 34.3 bits (77), Expect = 1.7
Identities = 22/69 (31%), Positives = 35/69 (49%), Gaps = 6/69 (8%)
Query: 21 NNRTYTFLIDPPFIYFAI--FDHRHTKSQTLTFLNRIRSSLKETLDSVN----DSTAPPP 74
N+ Y ++ D PF I F +TKS T+T+ + SL T D+ N D+T P
Sbjct: 163 NDNGYAYIEDVPFSEVVIGGFVGTYTKSGTVTYPDSTIFSLGSTFDAENVNFIDATVTPT 222
Query: 75 LSLQTPFDL 83
+ +P+D+
Sbjct: 223 YTKDSPYDI 231
>gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|30022378|ref|NP_834009.1| GTP-binding protein
[Bacillus cereus ATCC 14579]
Length = 301
Score = 33.9 bits (76), Expect = 2.3
Identities = 31/107 (28%), Positives = 56/107 (51%), Gaps = 6/107 (5%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKK-MVVDSATVIANRTSAKGLAAAAATEL 140
+LI +++LHL P V + D K++ V +AT++ R S KG+ ++
Sbjct: 195 ELIREKVLHLT--REEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGIIIGKQGKM 252
Query: 141 V-ELEKDAVE--EALVGSAIQIEGFRRVWLDLRSRLSLLHESRSEKD 184
+ E+ K A EAL+GS + +E + +V D R+++S L + +D
Sbjct: 253 LKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299
>gb|EAL33628.1| GA18599-PA [Drosophila pseudoobscura]
Length = 1662
Score = 33.9 bits (76), Expect = 2.3
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 106 HDEGLKKKKMVVDSATVIANRTSAKGLAAAAATELVELEKDAVEEALVGSAIQIEGFRRV 165
H++ +K + + +A++ K + A + +E K ++EE L ++E RR
Sbjct: 710 HEQQTQKMEHKLSEVRQLADQEKLKQEQSLTAIKQLEQFKSSMEERLAAKLSELEECRRE 769
Query: 166 WLDLRSRLSLLHESRSEKD 184
++++S+L + SEKD
Sbjct: 770 LIEVQSKLKETSQLNSEKD 788
>ref|YP_021170.1| gtp-binding protein era [Bacillus anthracis str. 'Ames Ancestor']
gi|30264370|ref|NP_846747.1| GTP-binding protein Era
[Bacillus anthracis str. Ames]
gi|49187195|ref|YP_030447.1| GTP-binding protein Era
[Bacillus anthracis str. Sterne]
gi|30259028|gb|AAP28233.1| GTP-binding protein Era
[Bacillus anthracis str. Ames]
gi|47504969|gb|AAT33645.1| GTP-binding protein Era
[Bacillus anthracis str. 'Ames Ancestor']
gi|65321672|ref|ZP_00394631.1| COG1159: GTPase [Bacillus
anthracis str. A2012] gi|49181122|gb|AAT56498.1|
GTP-binding protein Era [Bacillus anthracis str. Sterne]
Length = 301
Score = 33.5 bits (75), Expect = 2.9
Identities = 31/107 (28%), Positives = 56/107 (51%), Gaps = 6/107 (5%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKK-MVVDSATVIANRTSAKGLAAAAATEL 140
+LI +++LHL P V + D K++ V +AT++ R S KG+ ++
Sbjct: 195 ELIREKVLHLT--REEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGIIIGKQGKM 252
Query: 141 V-ELEKDAVE--EALVGSAIQIEGFRRVWLDLRSRLSLLHESRSEKD 184
+ E+ K A EAL+GS + +E + +V D R+++S L + +D
Sbjct: 253 LKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299
>emb|CAC49951.1| putative 3-hydroxyacyl-CoA dehydrogenase protein [Sinorhizobium
meliloti 1021] gi|16265299|ref|NP_438091.1| putative
3-hydroxyacyl-CoA dehydrogenase protein [Sinorhizobium
meliloti 1021] gi|25500409|pir||G96035 probable
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) [imported]
- Sinorhizobium meliloti (strain 1021) magaplasmid pSymB
Length = 438
Score = 33.5 bits (75), Expect = 2.9
Identities = 27/73 (36%), Positives = 36/73 (48%), Gaps = 13/73 (17%)
Query: 85 LQEILHLDDGNRSPPAVVGISHDEGLKKKKMVVDSATVIANRTSAKGLAAA---AATELV 141
L+ + H + R PPA+ GI + + SA VI T G+AAA A LV
Sbjct: 20 LRYVFHAERAARHPPALAGI--------EPRPIRSAAVIGGGTMGTGIAAALLHAGLPLV 71
Query: 142 ELEKD--AVEEAL 152
+E+D AVE AL
Sbjct: 72 LVERDEAAVERAL 84
>ref|YP_038355.1| GTP-binding protein [Bacillus thuringiensis serovar konkukian str.
97-27] gi|49332867|gb|AAT63513.1| GTP-binding protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|52141202|ref|YP_085626.1| GTP-binding protein
[Bacillus cereus E33L] gi|42783426|ref|NP_980673.1|
GTP-binding protein Era [Bacillus cereus ATCC 10987]
gi|51974671|gb|AAU16221.1| GTP-binding protein [Bacillus
cereus E33L] gi|42739355|gb|AAS43281.1| GTP-binding
protein Era [Bacillus cereus ATCC 10987]
Length = 301
Score = 33.5 bits (75), Expect = 2.9
Identities = 31/107 (28%), Positives = 56/107 (51%), Gaps = 6/107 (5%)
Query: 82 DLILQEILHLDDGNRSPPAVVGISHDEGLKKKK-MVVDSATVIANRTSAKGLAAAAATEL 140
+LI +++LHL P V + D K++ V +AT++ R S KG+ ++
Sbjct: 195 ELIREKVLHLT--REEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGIIIGKQGKM 252
Query: 141 V-ELEKDAVE--EALVGSAIQIEGFRRVWLDLRSRLSLLHESRSEKD 184
+ E+ K A EAL+GS + +E + +V D R+++S L + +D
Sbjct: 253 LKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,113,715
Number of Sequences: 2540612
Number of extensions: 11122511
Number of successful extensions: 63330
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 63309
Number of HSP's gapped (non-prelim): 41
length of query: 184
length of database: 863,360,394
effective HSP length: 120
effective length of query: 64
effective length of database: 558,486,954
effective search space: 35743165056
effective search space used: 35743165056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0110a.15