BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0108.3
(169 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thali... 74 2e-12
gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D8... 74 2e-12
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali... 71 1e-11
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 69 7e-11
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 64 2e-09
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ... 64 2e-09
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 62 5e-09
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 59 4e-08
ref|XP_462677.1| OSJNBa0093F12.7 [Oryza sativa (japonica cultiva... 59 7e-08
pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana g... 57 2e-07
ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana] 57 3e-07
ref|NP_914902.1| OSJNBa0052O12.20 [Oryza sativa (japonica cultiv... 56 4e-07
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 56 4e-07
emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana] gi|3... 55 1e-06
ref|NP_175165.1| expressed protein [Arabidopsis thaliana] 55 1e-06
gb|AAG28895.1| F12A21.24 [Arabidopsis thaliana] 55 1e-06
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 54 2e-06
gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum] 53 3e-06
dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cul... 53 3e-06
gb|AAP52394.1| putative reverse transcriptase [Oryza sativa (jap... 53 4e-06
>gb|AAV68820.1| hypothetical protein AT1G17390 [Arabidopsis thaliana]
gi|18394475|ref|NP_564020.1| hypothetical protein
[Arabidopsis thaliana] gi|9665118|gb|AAF97302.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 73.6 bits (179), Expect = 2e-12
Identities = 50/146 (34%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 1 LCWLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAI 59
+ W P VG +K N DG S R A GGV+RD DGNW GF + + LAELW
Sbjct: 102 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 161
Query: 60 RTAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLI 119
+++A +RG + + +E DS + + P S +VR + V +
Sbjct: 162 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHV 221
Query: 120 PREANMVADCLAQNAHVFNFGVHLLH 145
REAN +AD LA A G HL +
Sbjct: 222 YREANRLADGLANYAFFLPLGFHLFN 247
>gb|AAF79490.1| F1L3.4 [Arabidopsis thaliana] gi|25402823|pir||D86310 protein
F1L3.4 [imported] - Arabidopsis thaliana
Length = 253
Score = 73.6 bits (179), Expect = 2e-12
Identities = 50/146 (34%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 1 LCWLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAI 59
+ W P VG +K N DG S R A GGV+RD DGNW GF + + LAELW
Sbjct: 83 IAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGA 142
Query: 60 RTAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLI 119
+++A +RG + + +E DS + + P S +VR + V +
Sbjct: 143 YYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFLVRLCHGLLSKDWSVRISHV 202
Query: 120 PREANMVADCLAQNAHVFNFGVHLLH 145
REAN +AD LA A G HL +
Sbjct: 203 YREANRLADGLANYAFFLPLGFHLFN 228
>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|25407930|pir||H84677 hypothetical protein At2g27870
[imported] - Arabidopsis thaliana
gi|15226268|ref|NP_180354.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 71.2 bits (173), Expect = 1e-11
Identities = 53/166 (31%), Positives = 72/166 (42%), Gaps = 1/166 (0%)
Query: 1 LCWLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAI 59
+ W P G WK N DG S A GGVLRD +G W GF + + LAELW +
Sbjct: 144 IAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGV 203
Query: 60 RTAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLI 119
+ +A +R + + IE DS + + P S +VR I +V +
Sbjct: 204 YYGLYIAWERRVTRLEIEVDSEIVVGFLKIGINEVHPLSFLVRLCHDFISRDWRVRISHV 263
Query: 120 PREANMVADCLAQNAHVFNFGVHLLHHPLMECRYLLYQDSMTVVAS 165
REAN +AD LA A G H L R++L D+ S
Sbjct: 264 YREANRLADGLANYAFSLPLGFHSLSLVPDSLRFILLDDTSGATVS 309
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 68.6 bits (166), Expect = 7e-11
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 3 WLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W+ P G K N DG S A GGVLRD +G W+ GF + + LAELW +
Sbjct: 153 WVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYY 212
Query: 62 AVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
+ +A RG + +E DS +T+ P S ++R + G V + R
Sbjct: 213 GLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFLLRLCYDFLSKGWIVRISHVYR 272
Query: 122 EANMVADCLAQNAHVFNFGVHLL 144
EAN +AD LA A + G+HLL
Sbjct: 273 EANRLADGLANYAFSLSLGLHLL 295
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 63.5 bits (153), Expect = 2e-09
Identities = 51/161 (31%), Positives = 71/161 (43%), Gaps = 1/161 (0%)
Query: 1 LCWLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAI 59
+ W P G N DG S +A GGV+RD G+W+ GF + + LAELW +
Sbjct: 506 IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGV 565
Query: 60 RTAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLI 119
+ +A +RG + +E DSA + S P + +VR I V +
Sbjct: 566 YYGLVVAWERGWRRVRLEVDSALVVGFLQSGIGDSHPLAFLVRLCHGFISKDWIVRITHV 625
Query: 120 PREANMVADCLAQNAHVFNFGVHLLHHPLMECRYLLYQDSM 160
REAN +AD LA A FG LL +L +D M
Sbjct: 626 YREANRLADGLANYAFTLPFGFLLLDSCPEHVSSILLEDVM 666
>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 308
Score = 63.5 bits (153), Expect = 2e-09
Identities = 45/141 (31%), Positives = 63/141 (43%), Gaps = 1/141 (0%)
Query: 3 WLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W+LP VG K N DG S A GGVLRDC+G W GF + + AELW +
Sbjct: 140 WVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYY 199
Query: 62 AVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
+ A ++ + +E DS + + P S +VR + V + R
Sbjct: 200 GLYFAWEKKVPRVELEVDSEAIVGFLKTGISDSHPLSFLVRLCHNFLQKDWLVRIVYVYR 259
Query: 122 EANMVADCLAQNAHVFNFGVH 142
EAN +AD LA + + G H
Sbjct: 260 EANCLADGLANYTILLSLGFH 280
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 62.4 bits (150), Expect = 5e-09
Identities = 46/141 (32%), Positives = 62/141 (43%), Gaps = 1/141 (0%)
Query: 3 WLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W P G +K N DG S A GGV+RD +G W GF + + LAELW +
Sbjct: 452 WTPPSTGWFKLNTDGASRGNPGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWGVYY 511
Query: 62 AVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
+ +A +RG + +E DS + + P S +VR I V + R
Sbjct: 512 GLHIAWERGIRRLELEVDSTLVVGFLQAGIEDSHPLSFLVRLCYGFISRDWIVRISHVYR 571
Query: 122 EANMVADCLAQNAHVFNFGVH 142
EAN +AD LA A G H
Sbjct: 572 EANRLADGLANYAFSLPLGFH 592
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 59.3 bits (142), Expect = 4e-08
Identities = 45/141 (31%), Positives = 61/141 (42%), Gaps = 1/141 (0%)
Query: 3 WLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W+ P VG K N DG S A GGVLRDC G W GF + + AELW +
Sbjct: 561 WVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYY 620
Query: 62 AVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
+ A ++ + +E DS + + P S +VR + V + R
Sbjct: 621 GLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYR 680
Query: 122 EANMVADCLAQNAHVFNFGVH 142
EAN +AD LA A + G H
Sbjct: 681 EANRLADGLANYAFSLSLGFH 701
>ref|XP_462677.1| OSJNBa0093F12.7 [Oryza sativa (japonica cultivar-group)]
gi|32492339|emb|CAE05479.1| OSJNBa0006A01.25 [Oryza
sativa (japonica cultivar-group)]
gi|39545855|emb|CAE03933.3| OSJNba0093F12.7 [Oryza
sativa (japonica cultivar-group)]
gi|50928409|ref|XP_473732.1| OSJNBa0093F12.7 [Oryza
sativa (japonica cultivar-group)]
Length = 127
Score = 58.5 bits (140), Expect = 7e-08
Identities = 40/127 (31%), Positives = 64/127 (49%), Gaps = 5/127 (3%)
Query: 12 KFNVDGSVWQTREAGCGGVLRDCDGNW---VQGFCRRL*SSNPLLAELWAIRTAVDLAVQ 68
K NVDGS + G G +LR+ G+ V GF + S + L AE+ A + + LA+Q
Sbjct: 2 KLNVDGSYQENNTGGIGAILRNSTGDVIFAVYGFVEQ--SQSALEAEILACKEGIRLALQ 59
Query: 69 RGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPREANMVAD 128
PIIIE+D AEA + S L ++ +VR I+ + ++ + R N ++
Sbjct: 60 WTLLPIIIESDCAEAIQMILSEGKLRSAHTFLVREIQGMVKGAREMKLKKVNRNCNRISH 119
Query: 129 CLAQNAH 135
LA ++
Sbjct: 120 VLANKSY 126
>pir||B96652 protein F23N19.5 [imported] - Arabidopsis thaliana
gi|6630448|gb|AAF19536.1| F23N19.5 [Arabidopsis
thaliana]
Length = 233
Score = 57.4 bits (137), Expect = 2e-07
Identities = 47/161 (29%), Positives = 65/161 (40%), Gaps = 1/161 (0%)
Query: 3 WLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W P +G K N DG S A GG LR+ G W GF + LAELW +
Sbjct: 65 WSKPSLGWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYY 124
Query: 62 AVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
+ +A RG + + +E DS + + P S +VR + V + R
Sbjct: 125 GLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYR 184
Query: 122 EANMVADCLAQNAHVFNFGVHLLHHPLMECRYLLYQDSMTV 162
EAN +AD LA A G H P +L D + +
Sbjct: 185 EANRLADGLANYAFDLPLGYHAFASPPNSLDSILRDDELGI 225
>ref|NP_198321.2| hypothetical protein [Arabidopsis thaliana]
Length = 175
Score = 56.6 bits (135), Expect = 3e-07
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 1/159 (0%)
Query: 3 WLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W P +G K N DG S A GG LR+ G W GF + + LAELW +
Sbjct: 7 WSKPSLGWCKLNTDGASHGNPGLAIAGGALRNEYGEWCFGFALNIGRCSAPLAELWGVYY 66
Query: 62 AVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
+ +A RG + + +E DS + + P S +VR + V + R
Sbjct: 67 GLFMAWDRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYR 126
Query: 122 EANMVADCLAQNAHVFNFGVHLLHHPLMECRYLLYQDSM 160
EAN +AD LA A G H P +L D +
Sbjct: 127 EANRLADELANYAFDLPLGYHGFASPPSSLDSILRDDEL 165
>ref|NP_914902.1| OSJNBa0052O12.20 [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 55.8 bits (133), Expect = 4e-07
Identities = 36/121 (29%), Positives = 60/121 (48%), Gaps = 2/121 (1%)
Query: 3 WLLPPVGSWKFNVDGSVWQTR-EAGCGGVLRDCDGNWVQGFCRRL*S-SNPLLAELWAIR 60
W+ P G K NVDGS + + + G G VLRD GN + C L ++ L AE+ R
Sbjct: 153 WIRPQEGWMKLNVDGSYYPSDGKGGTGAVLRDSSGNLIFAACGVLHRPASALEAEMVDCR 212
Query: 61 TAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIP 120
+ +A+Q PII+ETD E + S + + + ++R ++ + ++V +
Sbjct: 213 EGISMALQWTLLPIIVETDCLEMVQLIHSDEKAMSDLAFLIREVKLLLKGNREIVIKKVS 272
Query: 121 R 121
R
Sbjct: 273 R 273
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 55.8 bits (133), Expect = 4e-07
Identities = 45/161 (27%), Positives = 70/161 (42%), Gaps = 1/161 (0%)
Query: 1 LCWLLPPVGSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAI 59
+ W P N DG S A GV+RD +G+W+ GF + + LAELW +
Sbjct: 226 IVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEGSWLGGFALNIGVCSAPLAELWGV 285
Query: 60 RTAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLI 119
+ A +RG +++E +S + S P + +VR + I V +
Sbjct: 286 YYGLVTAWERGVRRVVLEVESKLVVGFLQSGIRDTHPLAFLVRLCQGFIARDWLVRVTHV 345
Query: 120 PREANMVADCLAQNAHVFNFGVHLLHHPLMECRYLLYQDSM 160
REAN +AD LA A G+ LL ++ +DS+
Sbjct: 346 YREANRLADGLANYAFTLPIGLQLLDDCPASVNSIMVEDSV 386
>emb|CAB81249.1| hypothetical protein [Arabidopsis thaliana]
gi|3402761|emb|CAA20207.1| hypothetical protein
[Arabidopsis thaliana] gi|3080386|emb|CAA18706.1|
hypothetical protein [Arabidopsis thaliana]
gi|7485719|pir||T05150 hypothetical protein F18E5.40 -
Arabidopsis thaliana
Length = 229
Score = 54.7 bits (130), Expect = 1e-06
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 3 WLLPPVGSWKFNVDGSVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRTA 62
W P G K N DGS + +A GGV R+ ++ G+ + + +AE A++
Sbjct: 63 WKKPENGRIKLNFDGSRGREGQASIGGVFRNHKAEFLLGYSESIGEATSTMAEFAALKRG 122
Query: 63 VDLAVQRGCSPIIIETDSAEAHAAVTSAQPL-IPPYSEIVRHIRRSIPHGMKVVFDLIPR 121
++LA++ G + + +E D+ ++ L ++ V +I+ +P V + R
Sbjct: 123 LELALENGLTDLWLEGDAKIIMDIISRRGRLRCEKTNKHVNYIKVVMPELNNCVLSHVYR 182
Query: 122 EANMVADCLAQNAHVF 137
E N VAD LA+ H F
Sbjct: 183 EGNRVADKLAKLGHQF 198
>ref|NP_175165.1| expressed protein [Arabidopsis thaliana]
Length = 259
Score = 54.7 bits (130), Expect = 1e-06
Identities = 45/137 (32%), Positives = 59/137 (42%), Gaps = 1/137 (0%)
Query: 9 GSWKFNVDG-SVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRTAVDLAV 67
G K N DG S A GGVL+D +G W GF + S+ +AELW + LA
Sbjct: 99 GCLKINTDGASRGNPGLATAGGVLQDNEGRWCGGFSLNIGRSSAPMAELWGAYYGLYLAW 158
Query: 68 QRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPREANMVA 127
+R S I +E DS + + P S +VR I +V + REAN A
Sbjct: 159 ERKSSHIELEVDSEIVVGFLKTGISDHHPLSFLVRLCHGFISKDWRVRIFHVYREANRFA 218
Query: 128 DCLAQNAHVFNFGVHLL 144
D LA G H +
Sbjct: 219 DGLANYVFSLPLGFHFV 235
>gb|AAG28895.1| F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 54.7 bits (130), Expect = 1e-06
Identities = 41/136 (30%), Positives = 60/136 (43%)
Query: 25 AGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRTAVDLAVQRGCSPIIIETDSAEAH 84
A GGV+RD GNW GF + + LAELW + LA + + + +E DS
Sbjct: 658 ATAGGVIRDGAGNWCGGFALNIGRCSAPLAELWGVYYGFYLAWTKALTRVELEVDSELVV 717
Query: 85 AAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIPREANMVADCLAQNAHVFNFGVHLL 144
+ + P S +VR + V + REAN +AD LA A G H L
Sbjct: 718 GFLKTGIGDQHPLSFLVRLCHGLLSKDWIVRITHVYREANRLADGLANYAFSLPLGFHSL 777
Query: 145 HHPLMECRYLLYQDSM 160
+ +L++DS+
Sbjct: 778 IDVPDDLEVILHEDSL 793
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 53.9 bits (128), Expect = 2e-06
Identities = 42/131 (32%), Positives = 59/131 (44%), Gaps = 2/131 (1%)
Query: 3 WLLPPVGSWKFNVDGSVWQTR-EAGCGGVLRDCDGNWVQGFCRRL*S-SNPLLAELWAIR 60
WL P GS K NVDGS ++ + G G VLR+C G + C + S+ L EL A R
Sbjct: 1728 WLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLACR 1787
Query: 61 TAVDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVVFDLIP 120
+ LA+Q PI+IETD A + ++R I + + F
Sbjct: 1788 DGLALALQWTLLPIVIETDCLAMIHLFRDATGAKSELAFLIREIDSLLVGNRDISFSKCL 1847
Query: 121 REANMVADCLA 131
R N ++ LA
Sbjct: 1848 RSQNHISHYLA 1858
>gb|AAT38805.1| hypothetical protein PGEC747E24.5 [Solanum demissum]
Length = 1155
Score = 53.1 bits (126), Expect = 3e-06
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Query: 3 WLLPPVGSWKFNVDGSVWQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRTA 62
W+ PP K N DGS R G GG+LR+ G + F +L AE ++
Sbjct: 992 WIKPPTMFAKLNTDGSCVNGR-CGGGGILRNALGQVIMAFTIKLGEGTSSWAEAMSMLHG 1050
Query: 63 VDLAVQRGCSPIIIETDSAEAHAAVTSAQPLIPPYSEIVRHIRRSI-PHGMKVVFDLIPR 121
+ L +QRG + II ETDS A+T + V+ I++ + HG + + R
Sbjct: 1051 MQLCIQRGVNMIIGETDSILLAKAITENWSIPWRMYIPVKKIQKMVEEHGF--IINHCLR 1108
Query: 122 EANMVADCLA 131
EAN AD LA
Sbjct: 1109 EANQPADKLA 1118
>dbj|BAD45551.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 240
Score = 53.1 bits (126), Expect = 3e-06
Identities = 44/140 (31%), Positives = 62/140 (43%), Gaps = 12/140 (8%)
Query: 3 WLLPPVGSWKFNVDGSV-WQTREAGCGGVLRDCDGNWVQGFCRRL*SSNPLLAELWAIRT 61
W P G K N DGS T A GGV RD DG ++ G+ R+ ++ +AEL A+R
Sbjct: 79 WRKPEEGWMKLNFDGSSKHSTGIASIGGVYRDHDGAFLLGYAERIGTATSSVAELAALRR 138
Query: 62 AVDLAVQRGCSPIIIETDSAEA------HAAVTSAQPLIPPYSEIVRHIRRSIPHGMKVV 115
++LAV+ G + E DS A V S + L + R I +P +
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVVDVVCDRADVQSEEDL-----RLCREIAALLPQLDDMA 193
Query: 116 FDLIPREANMVADCLAQNAH 135
+ R N VA A+ H
Sbjct: 194 VSHVRRGGNKVAHGFAELGH 213
>gb|AAP52394.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37531610|ref|NP_920107.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 230
Score = 52.8 bits (125), Expect = 4e-06
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 3 WLLPPVGSWKFNVDGSVWQTR-EAGCGGVLRDCDGNWVQGFCRRL*S-SNPLLAELWAIR 60
WL P GS K NVDGS ++ + G G VLR+C G + C + S+ L EL A R
Sbjct: 112 WLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLACR 171
Query: 61 TAVDLAVQRGCSPIIIETD 79
+ LA+Q PI+IETD
Sbjct: 172 DGLALALQWTLLPIVIETD 190
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.141 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,231,620
Number of Sequences: 2540612
Number of extensions: 10919821
Number of successful extensions: 27268
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 170
Number of HSP's that attempted gapping in prelim test: 27147
Number of HSP's gapped (non-prelim): 217
length of query: 169
length of database: 863,360,394
effective HSP length: 118
effective length of query: 51
effective length of database: 563,568,178
effective search space: 28741977078
effective search space used: 28741977078
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0108.3