BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0108.16
(709 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 267 8e-70
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 239 2e-61
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 237 9e-61
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 236 1e-60
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 232 3e-59
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 214 8e-54
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 213 1e-53
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 207 1e-51
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 204 6e-51
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 202 3e-50
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 202 3e-50
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 201 5e-50
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 193 1e-47
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 187 8e-46
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 186 2e-45
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 180 1e-43
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 173 2e-41
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 170 1e-40
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 169 4e-40
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 168 6e-40
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 267 bits (683), Expect = 8e-70
Identities = 195/718 (27%), Positives = 334/718 (46%), Gaps = 71/718 (9%)
Query: 42 LEAY*GFSPWPPV---------SHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKV 92
+EA G W P+ SH+ FADD++LF +AS Q++++ L F +SG KV
Sbjct: 518 IEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKV 577
Query: 93 NIDKSKAISSKGVHPSIRDDIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINR 152
+++KSK S V + I + I +LGKYLG P+ R+++ F +LE ++
Sbjct: 578 SLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSA 637
Query: 153 KMAAWKTNLLNLAGRACLAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQR 212
++A WK L+LAGR L K+V++++P + M LP S + +DR R+F+W ++
Sbjct: 638 RLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKK 697
Query: 213 GWNLVNWSTVVRDKSHGGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKY----L 268
+L++W + + K+ GG+G++ D N AL+ K W LL++ LW +V++ KY +
Sbjct: 698 KQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGV 757
Query: 269 RDHTILNAPHRASSSAVWKGI-LRARDRLRGGFKFRLGTG-NSSIWYNDWSGHGNLCEHL 326
+D + L R SS+ W+ + + R+ + G + G G W + W L E
Sbjct: 758 QDTSWLKPQPRWSST--WRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELG 815
Query: 327 PFVHITDTQLHLRD--LVVNNAWDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGES 384
+ ++ + + + W+ L +PE +K+ L V V + D +W +
Sbjct: 816 TDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGT 875
Query: 385 ELGL------------DLEAQSSRESEF--------------FVWLCLHDALPVNSKRFH 418
+ G D+ + + S F F+WL + + N +R
Sbjct: 876 QDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVR 935
Query: 419 CHLANSEACSRCSYIREDGIHSLRDCTHSRELWSR-MGAGRWNNFWTLNLSDWITLH--- 474
HL+ + CS C+ E +H LRDC +W R + R + F++ +L +W+ +
Sbjct: 936 RHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDP 995
Query: 475 ARSDHAVKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQL------ 528
+ F G+W WKWRC V RKI D F+K M ++
Sbjct: 996 VKGIWPTLFGMGIWWAWKWRCCDVFGE---------RKICRDRLKFIKDMAEEVRRVHVG 1046
Query: 529 -----SHDDSFWLSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAH 583
+ + W+ P + +K+ DG+ R + GL GGA+R+ G W+ GF +
Sbjct: 1047 AVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALN 1106
Query: 584 YDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEI 643
+ A +AE+ GL IAW++G RR+ + DC +LV S + H ++
Sbjct: 1107 IGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDC-KLVVGFLSTGVSNAHPLSFLVRLC 1165
Query: 644 RTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLLKDSLG 701
+ W + ++ + RE NR+AD LA ++ L + P +++LLL D G
Sbjct: 1166 QGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLG-LHCFDACPEGVRLLLLADVNG 1222
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 239 bits (611), Expect = 2e-61
Identities = 177/623 (28%), Positives = 278/623 (44%), Gaps = 64/623 (10%)
Query: 132 PLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLAKSVIAAMPTYTMQVFWLPRS 191
P+ R+++ F +LE + ++A W+ L+LAGR L K+V+A++P +TM LP+S
Sbjct: 2 PILQKRINKDTFIEVLERASSRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPKS 61
Query: 192 IIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGLGMKDMSDHNTALLGKAVWLL 251
+ +D+ RSF+W +R +L+ W V K+ GGLG++ N ALL K W L
Sbjct: 62 TLDKLDQLSRSFLWGSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRL 121
Query: 252 LKNSNKLWVQVMQHKY----LRDHTILNAPHRASSSAVWKGILRA-RDRLRGGFKFRLGT 306
+K+ LW +V++ KY LRD T +N ASS+ W+ I R+ + G + +G
Sbjct: 122 MKDRTSLWARVLRSKYRIGGLRDTTWINTKRNASST--WRSIKSGLREVVIPGMNWVVGD 179
Query: 307 GNS-SIWYNDWSGHGNLCEHLPFVHITDTQ-LHLRDL-VVNNAWDFSKLFTSIPEEMKQW 363
G W + W + + D Q + +R+L + WD +K+ + E ++
Sbjct: 180 GKDICFWDDKWLVEDPIRDLAAVELPADFQGIKIRELWHEGSGWDLAKIIPYVSEGVRLR 239
Query: 364 FLEVSPSVQNTSHDVWTWGESELG-----------LDLEAQSSRESEF------------ 400
L + S+D +WG + G L E Q+ +F
Sbjct: 240 LLSMVVDTVTGSNDRTSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTER 299
Query: 401 ---FVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIHSLRDCTHSRELWSRM-GA 456
F+WL +H + + +R HL+ S C C E +H LRDC +W R+
Sbjct: 300 VRVFIWLVVHQVIMTDVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPR 359
Query: 457 GRWNNFWTLNLSDW-------ITLHARSDHAVKFLAGLWGIWKWRCNMVM-------DTA 502
G+ F+ N+ DW +T A F +W WKWRC V D
Sbjct: 360 GKITAFFASNILDWVYQNLSDVTEIRGCPWATLFAIVVWWAWKWRCGNVFGENGRCRDRV 419
Query: 503 PWTIDTA---WRKIAHDHDDFLKFMQPQLSHDDSFWLSVVWKPPPNQCMKMNVDGSFRSD 559
+ +D A W IAH + ++ +S+ W PP K+N DG+ R +
Sbjct: 420 RFVVDQAREIW--IAHLN------LRRGAMRGSEVEMSIKWTPPSTGWFKLNTDGASRGN 471
Query: 560 EGLMGTGGALRDSSGSWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCL 619
GL GG +RD G W GF+ + +A +AE+ + GL IAWE+G RRL E D
Sbjct: 472 PGLATAGGVVRDGEGQWCVGFVLNIGICSAPLAELWGVYYGLHIAWERGIRRLELEVDS- 530
Query: 620 ELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALS 679
LV H ++ + W + I+ + RE NR+AD LA S+ L
Sbjct: 531 TLVVGFLQAGIEDSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYAFSLPLG 590
Query: 680 EVQELVEPPSELQILLLKDSLGV 702
P+ + + L+D+ GV
Sbjct: 591 -FHACGSMPAPVASIALEDAAGV 612
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 237 bits (605), Expect = 9e-61
Identities = 172/617 (27%), Positives = 275/617 (43%), Gaps = 65/617 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SH+ FADD++LF +AS +Q++++ L F +SG KV++DKSK SK V +
Sbjct: 351 PKISHICFADDLILFAEASVSQIRVIRRILETFCIASGQKVSLDKSKIFFSKNVSRDLEK 410
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I + I +LGKYLG P+ R+++ F +LE ++ ++A WK L+ AGR L
Sbjct: 411 LISKESGIKSTRELGKYLGMPILQRRINKDTFGEVLERVSSRLAGWKGRSLSFAGRLTLT 470
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV++ +P +TM LP+S + +D+ R F+ + ++ +LV W V KS GGL
Sbjct: 471 KSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRVCLPKSEGGL 530
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G++ N AL+ K W L+ + LW ++++ KY +
Sbjct: 531 GIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYR---------------------VG 569
Query: 292 ARDRLRGGFKFRLGTGNSSI-WYNDWSGHGNLCEHLPF-VHITDTQLHLRDLVVNN-AWD 348
R+ + G ++ +G G + W ++W H L + ++ +L ++DL N W
Sbjct: 570 LREVVSRGSRWVVGNGRDILFWSDNWLSHEALINRAVIEIPNSEKELRVKDLWANGLGWK 629
Query: 349 FSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGLDLEAQSSR-----------E 397
K+ I + V + D +WG S G+ + R
Sbjct: 630 LDKIEPYISYHTRLELAAVVVDSVTGARDRLSWGYSADGVFTVKSAYRLLTEDHDPRPNM 689
Query: 398 SEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIHSLRDCTHSRELWSRM-GA 456
+ FF L AL K F H+ ++ C C E +H L+DC +W R+
Sbjct: 690 AAFFDRLWRVVALE-RVKTFLWHIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQV 748
Query: 457 GRWNNFWTLNLSDWITLHARSDH-------AVKFLAGLWGIWKWRCNMVMDTAPWTIDTA 509
R +F+ +L W+ ++ + A F +W WKWRC V
Sbjct: 749 QRSYDFFNGSLFGWLYVNLGMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEV------- 801
Query: 510 WRKIAHDHDDFLKFMQPQLSHDDSFWLS-----------VVWKPPPNQCMKMNVDGSFRS 558
D F + + ++SH + V WKPP + +K+N DG+ R
Sbjct: 802 --GKCRDRVKFFRDLAAEVSHAHAIHSQNGGLRTRVERLVAWKPPDGEWVKLNTDGASRG 859
Query: 559 DEGLMGTGGALRDSSGSWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDC 618
+ GL TGG LRD G W GF +A +AE+ + GL +AWE+ R+ E D
Sbjct: 860 NLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDS 919
Query: 619 LELVRNLASVDWVSLHS 635
ELV + HS
Sbjct: 920 -ELVVGFLTTGISDTHS 935
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 236 bits (603), Expect = 1e-60
Identities = 199/697 (28%), Positives = 298/697 (42%), Gaps = 80/697 (11%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SHLLFADD LLF +A Q Q V + + D+ ++G +N K + + P RD
Sbjct: 185 PGISHLLFADDTLLFFKADNVQAQAVKEVITDYALATGQLINPAKCSIMFGESSPPQTRD 244
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
IR I +YLGFP GR+ +G+F L E I +++ W NLL+ G+ L
Sbjct: 245 VIRVTLQIANSGFEDRYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSSGGKEVLI 304
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSVI +P Y M +F LP S+ + + R+F W G+R + +W + R KS+GGL
Sbjct: 305 KSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGKRKTHWKSWECLTRPKSNGGL 364
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D N ALL + W L+ N + L +V++ KY + ++++ ++S VWK I
Sbjct: 365 GFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNASPVWKAIEY 424
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRD--LVVNNAWD 348
L+ G +R+G G S IW + W P + +L L N AWD
Sbjct: 425 GLSLLKEGIIWRIGNGKSVRIWRDPWLPRD--FSRRPITRKGNCRLKWVSELLSENGAWD 482
Query: 349 FSKLFTSIPEEMKQWFLEVSP----SVQNTSH---DVWTWGESELG-------------- 387
++ + Q FL V S++ +S D W + G
Sbjct: 483 ETR--------VNQVFLPVDAEAICSIRVSSRQEDDFVAWHPDKHGKFSVRSAYGLACNL 534
Query: 388 LDLEAQSSRES-------------------EFFVWLCLHDALPVNSKRFHCHLANSEACS 428
+++E SS S F W + L + L S+ C
Sbjct: 535 VNMETSSSSSSARCKRMWNLIWQTNAPQKVRIFAWRAATNCLATMENKAKRKLEQSDICL 594
Query: 429 RCSYIREDGIHSLRDCTHSRELWSRM---GAGRWNNFWTLNLSDWI--TLHARSDH-AVK 482
C +ED H L C +R LW M G N N WI L D+
Sbjct: 595 VCGLEKEDTKHVLCRCPDARNLWGAMCEAGNISLNGGNLCNDPGWIFDQLEILLDYERTV 654
Query: 483 FLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQ-PQLS-----HDDSFW- 535
FL LW IW R +V P I+ + R + L+ Q PQ + H SF
Sbjct: 655 FLLILWRIWFVRNEIVHGKQPPPIEASKRFLESYVKSLLEIRQHPQANVEKGKHVISFVN 714
Query: 536 ------------LSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAH 583
+ W+ P MK+NVDGSF + G G G +RD SG + H
Sbjct: 715 GKTNPARRPPEDKNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCKH 774
Query: 584 YDN-GNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSE 642
G+A +E+LA ++G+ + + R+ + E+DCL +V+ L S + + ++ E
Sbjct: 775 LPRCGSALESEILACKEGILVGLQWSLRQFVVETDCLMVVQMLESKE-REMSEVAFLVKE 833
Query: 643 IRTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALS 679
+L I + I R N V+ LA +G LS
Sbjct: 834 ATELLSGDREIQLRKIHRSQNSVSHLLANKGRCEGLS 870
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 232 bits (592), Expect = 3e-59
Identities = 181/681 (26%), Positives = 297/681 (43%), Gaps = 60/681 (8%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
PP+SHLLFADD + +C+ + + + + ++ +SG +VN KS K + R
Sbjct: 674 PPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRC 733
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I G YLG P S ++L + + +K+ W++N L+ G+ L
Sbjct: 734 LVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILL 793
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V A+PTYTM F +P++I I+ M F W RG + W + R K+ GGL
Sbjct: 794 KAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGL 853
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G K++ N ALLGK +W ++ + L +V + +Y LNAP + S WK I
Sbjct: 854 GFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYE 913
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSG-------HGNLCEHLPFVHITDTQLHLRDLVV 343
A+ ++ G + +G G + ++W + W G HL + ++ ++DL++
Sbjct: 914 AQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLL 973
Query: 344 NNA--WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG-----------LDL 390
+ W+++ + P+ ++ L + P + T D +TW S G ++
Sbjct: 974 PDGRDWNWNLVSLLFPDNTQENILALRPGGKET-RDRFTWEYSRSGHYSVKSGYWVMTEI 1032
Query: 391 EAQSSRESE-----------------------FFVWLCLHDALPVNSKRFHCHLANSEAC 427
Q + E F+W C+++ L V S + HLA ++C
Sbjct: 1033 INQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSC 1092
Query: 428 SRCSYIREDGIHSLRDCTHSRELWS-----RMGAGRWNNFWTLNLSDWITLH----ARSD 478
RC E H L C +R W+ G W N+ +++H SD
Sbjct: 1093 VRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESD 1152
Query: 479 HAVKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFW-LS 537
H LW +WK R ++V +T K D D + +PQ S
Sbjct: 1153 HHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRC 1212
Query: 538 VVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGS--WVTGFMAHYDNGNAFIAEML 595
V W+PP + +K N DG++ D G G G LR+ +G W+ G A + E+
Sbjct: 1213 VKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWL-GLRALPSQQSVLETEVE 1271
Query: 596 ALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDI 655
ALR + RR+I ESD LV + + + + S + +IR +LR +
Sbjct: 1272 ALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNE--MDIPSLAPRIQDIRNLLRHFEEVKF 1329
Query: 656 AWIDREGNRVADWLAKRGASI 676
+ REGN VAD A+ S+
Sbjct: 1330 QFTRREGNNVADRTARESLSL 1350
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 214 bits (545), Expect = 8e-54
Identities = 184/689 (26%), Positives = 296/689 (42%), Gaps = 83/689 (12%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P ++HL FADD L FCQA+ Q + D + SG K+N+ KS V+ S +
Sbjct: 830 PAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQS 889
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I IP GKYLG P GR + F ++++ + ++ + W L+ AG+ +
Sbjct: 890 KLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIML 949
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV AMP Y M F LP+ I+ I+ + +F W K S QRG V W + K GGL
Sbjct: 950 KSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGL 1009
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K W L++ N L+ +VM+ +Y +D +IL+A R S W +L
Sbjct: 1010 GFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLD 1069
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNA----- 346
L+ G + +G G N G N+ + P +T+ +++ +NN
Sbjct: 1070 GIALLKKGTRHLIGDGQ-----NIRIGLDNIVDSHP-PRPLNTEETYKEMTINNLFERKG 1123
Query: 347 ----WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG--------------- 387
WD SK+ + ++ F+ ++ D W + G
Sbjct: 1124 SYYFWDDSKI-SQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDP 1182
Query: 388 -------------LDLEAQ-----SSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSR 429
+DL+ + + + F+W L AL + + C R
Sbjct: 1183 STNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPR 1242
Query: 430 CSYIREDGIHSLRDCTHSRELW-----SRMGAGRWNNFWTLNLS---DWITLHARSD-HA 480
C E H+L C + W S + +N + N+S +++ SD H
Sbjct: 1243 CHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK 1302
Query: 481 VKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQP---------QLSHD 531
+ + +W IWK R N+V + + + D+L Q Q++ +
Sbjct: 1303 LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN 1362
Query: 532 DSFWLSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGG-ALRDSSG---SWVTGFMAHYDNG 587
+ W+ PP +K N D F + L TGG +R+ G SW + +AH
Sbjct: 1363 -----KIEWRNPPATYVKCNFDAGF-DVQKLEATGGWIIRNHYGTPISWGSMKLAH--TS 1414
Query: 588 NAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSH-GHILSEIRTM 646
N AE AL L+ W +G ++ E DC L+ NL ++ +S HS + L +I
Sbjct: 1415 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI-NL--INGISFHSSLANHLEDISFW 1471
Query: 647 LRWSWRIDIAWIDREGNRVADWLAKRGAS 675
I +I R+GN++A LAK G +
Sbjct: 1472 ANKFASIQFGFIRRKGNKLAHVLAKYGCT 1500
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 213 bits (543), Expect = 1e-53
Identities = 183/689 (26%), Positives = 297/689 (42%), Gaps = 83/689 (12%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P ++HL FADD L FCQA+ Q + D + SG K+N+ KS V+ S +
Sbjct: 1056 PAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQS 1115
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I IP GKYLG P GR + F ++++ + ++ + W L+ AG+ +
Sbjct: 1116 RLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIML 1175
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV AMP Y M F LP+ I+ I+ + +F W K S QRG V W + K GGL
Sbjct: 1176 KSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGL 1235
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K W L++ N L+ +VM+ +Y +D +IL+A R S W +L
Sbjct: 1236 GFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLD 1295
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNA----- 346
L+ G + +G G N G N+ + P +T+ +++ +NN
Sbjct: 1296 GIALLKKGTRHLIGDGQ-----NIRIGLDNIVDSHP-PRPLNTEETYKEMTINNLFERKG 1349
Query: 347 ----WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG--------------- 387
WD SK+ + ++ F+ ++ D W + G
Sbjct: 1350 SYYFWDDSKI-SQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDP 1408
Query: 388 -------------LDLEAQ-----SSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSR 429
+DL+ + + + F+W L AL + + +C R
Sbjct: 1409 STNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPR 1468
Query: 430 CSYIREDGIHSLRDCTHSRELW-----SRMGAGRWNNFWTLNLS---DWITLHARSD-HA 480
C E H+L C + W S + +N + N+S +++ SD H
Sbjct: 1469 CHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK 1528
Query: 481 VKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQP---------QLSHD 531
+ + +W IWK R N+V + + + D+L Q Q++ +
Sbjct: 1529 LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN 1588
Query: 532 DSFWLSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGG-ALRDSSG---SWVTGFMAHYDNG 587
+ W+ PP +K N D F + L TGG +R+ G SW + +AH
Sbjct: 1589 -----KIEWRNPPATYVKCNFDAGF-DVQKLEATGGWIIRNHYGTPISWGSMKLAH--TS 1640
Query: 588 NAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSH-GHILSEIRTM 646
N AE AL L+ W +G ++ E DC L+ NL ++ +S HS + L +I
Sbjct: 1641 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI-NL--INGISFHSSLANHLEDISFW 1697
Query: 647 LRWSWRIDIAWIDREGNRVADWLAKRGAS 675
I +I ++GN++A LAK G +
Sbjct: 1698 ANKFASIQFGFIRKKGNKLAHVLAKYGCT 1726
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 207 bits (527), Expect = 1e-51
Identities = 148/516 (28%), Positives = 227/516 (43%), Gaps = 52/516 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SHLLFA D L+FC+A+ + + + L+ + +SG VN KS + KG+ +
Sbjct: 129 PAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSE 188
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
+ + I G+YLG P GR F+F+ + +++KM W LL+ AG+ L
Sbjct: 189 QLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLI 248
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KS++ A+PTY+M F LP +IH I AMR F WS + V WS + K GGL
Sbjct: 249 KSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGL 308
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
++D+ D N ALL K W +L+ L +V + KY +L+A + SS WK IL
Sbjct: 309 AIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILH 368
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITD---TQLHLRDLVVNNAW 347
+ G K+ G GN+ +W ++W L P V D +QL + DL++ W
Sbjct: 369 GTKLISRGLKYIAGNGNNIQLWKDNWL---PLNPPRPPVGTCDSIYSQLKVSDLLIEGRW 425
Query: 348 DFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTW---------------------GESEL 386
+ L I + + PS+ ++D TW +
Sbjct: 426 NEDLLCKLIHQNDIPHIRAIRPSITG-ANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHA 484
Query: 387 GLDLEAQSSRESEF--------------FVWLCLHDALPVNSKRFHCHLANSEACSRCSY 432
L + S ++ F F W H+ALP L + C RC
Sbjct: 485 SLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGE 544
Query: 433 IREDGIHSLRDCTHSRELWSRM------GAGRWNNFWTLNLSDWITLH--ARSDHAVKFL 484
ED H L C S+E+W + G +N + NL L+ AR D ++
Sbjct: 545 ASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPF 604
Query: 485 AGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDF 520
G W IWK R +++ + W+I + +K D +
Sbjct: 605 IG-WRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQW 639
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 204 bits (520), Expect = 6e-51
Identities = 167/643 (25%), Positives = 273/643 (41%), Gaps = 73/643 (11%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SHLLFADD LLF +A + ++V + L + +G +N K + P++ +
Sbjct: 1408 PGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSE 1467
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I I + +YLGFP GR+ +GRF L I +++ W N L+ G+ L
Sbjct: 1468 AISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLI 1527
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+VI A+P Y M +F LP S+I + + ++F W +GQR + W ++ + KS GGL
Sbjct: 1528 KAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGL 1587
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D N ALL + W L+ + L +V++ KY ++++ ++SS W+ I
Sbjct: 1588 GFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEY 1647
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLH-LRDLVV-NNAWD 348
D L+ G +R+G GNS IW + W + P + +L + DL+ + +WD
Sbjct: 1648 GLDLLKKGIIWRVGNGNSIRIWRDSWLPRDH--SRRPITGKANCRLKWVSDLITEDGSWD 1705
Query: 349 FSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGL--------------DLEAQS 394
K+ + L + S + D W + G+ ++E S
Sbjct: 1706 VPKIHQYFHNLDAEVILNICIS-SRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESS 1764
Query: 395 S-------------------RESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIRE 435
S ++ + F W + L + L S+ C C E
Sbjct: 1765 SSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENE 1824
Query: 436 DGIHSLRDCTHSRELWSRM----------GAGRWNNFWTLNLSDWITLHARSDHAVKFLA 485
D H+L C + +LWS M A FW + + I + ++ FL
Sbjct: 1825 DDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQA----MFLM 1880
Query: 486 GLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQ-PQ--------------LSH 530
LW W R ++ + +T+ R I D + Q PQ L
Sbjct: 1881 TLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKG 1940
Query: 531 DDSFWL----SVVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWV-TGFMAHYD 585
+ + W+ P + MK+NVDGSF + G G G LR+S+G + T
Sbjct: 1941 GPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLER 2000
Query: 586 NGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASV 628
N +E+ A +GLK+A + E+DC +V+ L +
Sbjct: 2001 CNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGI 2043
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 202 bits (514), Expect = 3e-50
Identities = 179/687 (26%), Positives = 290/687 (42%), Gaps = 78/687 (11%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SHLLFADD LLF +A + ++V + L + +G +N K + P++ +
Sbjct: 84 PGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSE 143
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I I + +YL FP GR+ +GRF L I +++ W N L+ G+ L
Sbjct: 144 AISEILQVERDRFEDRYLEFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLI 203
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+VI A+P Y M +F LP S+I + + ++F W +GQR + W ++ + KS GGL
Sbjct: 204 KAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGL 263
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D N ALL + W L+ + L +V++ KY ++++ ++SS W+ I
Sbjct: 264 GFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEY 323
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLH-LRDLVV-NNAWD 348
D L+ G +R+G GNS IW + W + P + +L + DL+ + +WD
Sbjct: 324 GLDLLKKGIIWRVGNGNSIRIWRDPWLPRDH--SRRPITGKANCRLKWVSDLITEDGSWD 381
Query: 349 FSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGL--------------DLEAQS 394
K+ + L + S + D W + G+ ++E S
Sbjct: 382 VPKIHQYFHNLDAEVILNICIS-SRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESS 440
Query: 395 S-------------------RESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIRE 435
S ++ + F W + L + L S+ C C E
Sbjct: 441 SSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENE 500
Query: 436 DGIHSLRDCTHSRELWSRM----------GAGRWNNFWTLNLSDWITLHARSDHAVKFLA 485
D H+L C + +LWS M A FW + + I + ++ FL
Sbjct: 501 DDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQA----MFLM 556
Query: 486 GLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQ-PQ--------------LSH 530
LW W R ++ + +T+ R I D + Q PQ L
Sbjct: 557 TLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKG 616
Query: 531 DDSFWL----SVVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWV-TGFMAHYD 585
+ + W+ P + MK+NVDGSF + G G G LR+S+G + T
Sbjct: 617 GPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLER 676
Query: 586 NGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASV--DWVSLHSHGHILSEI 643
N +E+ A +GLK+A + E+DC +V+ L D+ L +I+ E
Sbjct: 677 CNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSVL---ANIIHEA 733
Query: 644 RTMLRWSWRIDIAWIDREGNRVADWLA 670
R +L I I I R N ++ LA
Sbjct: 734 RHLLVGERVISIKKICRSQNCISHHLA 760
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 202 bits (514), Expect = 3e-50
Identities = 154/595 (25%), Positives = 254/595 (41%), Gaps = 86/595 (14%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HL FADD L FCQ++ Q + D + SG K+N+ KS VH + ++
Sbjct: 1056 PGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQN 1115
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I I GKYLG P GR R FN+++E + ++ ++W L+ AG+ +
Sbjct: 1116 RLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIML 1175
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV +MP Y M F LP +I+ I+ + +F W K + +R + W + K GGL
Sbjct: 1176 KSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGL 1235
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K VW ++ N N L+ ++M+ +Y R+ +IL+A + S W +L
Sbjct: 1236 GFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1295
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCEHL--PFVHITDTQLHLRDLVVNN--AW 347
D ++ G +F +G G + Y W+ H L L P H HL +V + W
Sbjct: 1296 GLDVIKKGSRFIVGDGKTGS-YRYWNAH--LISQLVSPDDHRFVMNHHLSRIVHQDKLVW 1352
Query: 348 DFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGLDLEAQSSRESEFFVWLCLH 407
++S + W L + P ++ + +W +
Sbjct: 1353 NYSS-----SGDYTLWKLPIIPKIK---------------------------YMLWRTIS 1380
Query: 408 DALPVNSKRFHCHLANSEACSRCSYIREDGIHSLRDCTHSRELWSRMGAGRW-------- 459
ALP S+ + C RC E H L C ++ +W + W
Sbjct: 1381 KALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWG-LSNFPWLPGHTFSQ 1439
Query: 460 ----NNFWTLNLSDWITLHARSDHAVKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAH 515
N + +N TL+ A +L +W +WK R N+V + ++ R +
Sbjct: 1440 DTEENISFLINSFSNNTLNTEQRLAPFWL--IWRLWKARNNLVFNKFS---ESCSRVVTQ 1494
Query: 516 DHDDFLKFMQPQLSHDDSFWLS-------VVWKPPPNQCMKMNVDGSFRSDEGLMGTGGA 568
+ +++Q +D+ L+ V WK P +K N D F +
Sbjct: 1495 TEAEVNEWLQSVNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDAGFTGNN-------- 1546
Query: 569 LRDSSGSWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVR 623
S+G W+ I E AL ++ AW +G + + E DC L++
Sbjct: 1547 -TQSTGGWI-------------IPETKALLIAMQQAWVRGYKCVQFEGDCEILIK 1587
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 201 bits (512), Expect = 5e-50
Identities = 128/437 (29%), Positives = 210/437 (47%), Gaps = 36/437 (8%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SH+ FADD++LF +AS Q++++ L F +SG KV+++KSK S+ V +
Sbjct: 199 PKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGK 258
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I + I +LGKYLG P+ R+++ F +LE + ++A WK L+LAGR L
Sbjct: 259 LISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLT 318
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V++++P +TM LP+S + +D+ RSF+W QR +L++W V + +S GGL
Sbjct: 319 KAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGL 378
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKY----LRDHTILNAPHRASSSAVWK 287
G++ D N ALL K W L+++ + LW ++M+ Y +RD R+ S+ W+
Sbjct: 379 GIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKV--RSVCSSTWR 436
Query: 288 GI-LRARDRLRGGFKFRLGTGNSSI-WYNDWSGHGNLCEHLPFVHITDTQ-LHLRDLVVN 344
+ L R+ + G + +G G + W + W + L E L + + RDL N
Sbjct: 437 SVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKGMRARDLRRN 496
Query: 345 N-AWDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG---------------- 387
WD + + I + + D +WGES+ G
Sbjct: 497 GIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTTYSFLTRDEA 556
Query: 388 --LDLE--------AQSSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDG 437
D++ + F+WL A+ N +R HL+ + C C +E
Sbjct: 557 PRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESI 616
Query: 438 IHSLRDCTHSRELWSRM 454
IH LRDC +W R+
Sbjct: 617 IHVLRDCPAMEGIWLRL 633
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 193 bits (491), Expect = 1e-47
Identities = 151/559 (27%), Positives = 243/559 (43%), Gaps = 60/559 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P ++HL FADD L FCQA+ Q + D + SG K+N+ KS V+ S +
Sbjct: 295 PAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQT 354
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ + IP GKYLG P GR + FN++++ + + A+W L+ AG+ L
Sbjct: 355 RLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILL 414
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV AMP Y M F LP+ I+ I+ + +F W K S +RG V W + K GGL
Sbjct: 415 KSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGL 474
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K W +++ N L+ +VM+ +Y +D++I++A R+ S W +L
Sbjct: 475 GFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLS 534
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCE-HLPFVHITDTQ---LHLRDLVV---- 343
LR G ++ +G G + G N+ + H P +TD Q L L +L
Sbjct: 535 GIALLRKGTRYVIGDGKTI-----RLGIDNVVDSHPPRPLLTDEQHNGLSLDNLFQHRGH 589
Query: 344 NNAWDFSKLFTSIPEE----MKQWFLEVSP-----------------------SVQNTSH 376
+ WD +KL T + + +K+ +L S + S+
Sbjct: 590 SRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSN 649
Query: 377 DVWTWGESELGLDLEAQ-----SSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCS 431
+ T + +DL+ + + + F+W L ALP + + C RC
Sbjct: 650 TIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCR 709
Query: 432 YIREDGIHSLRDCTHSRELWSRMGAGRW-NNFWTLNLSDWI---------TLHARSDHAV 481
E H+L C + W + ++ + N+ D I T S +
Sbjct: 710 RENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLI 769
Query: 482 KFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQ----LSHDDSFWLS 537
F LW IWK R N+V + + + + +++L Q Q L + +
Sbjct: 770 PFWL-LWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPKRTTAAGN 828
Query: 538 VVWKPPPNQCMKMNVDGSF 556
W P +K N D SF
Sbjct: 829 TTWVKPQMPYIKCNFDASF 847
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 187 bits (476), Expect = 8e-46
Identities = 171/672 (25%), Positives = 287/672 (42%), Gaps = 52/672 (7%)
Query: 49 SPWPPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPS 108
+P P VSHLLFADD L FC+A+ Q ++ + L+ + + SG ++N KS V S
Sbjct: 455 TPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDS 514
Query: 109 IRDDIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRA 168
I+ DI+ I I + +G YLG P S G F+F+ + + ++ W L+ G+
Sbjct: 515 IKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKE 574
Query: 169 CLAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSH 228
+ KSV A +P Y M F LP++I + A+ F WS RG + + W + KS
Sbjct: 575 VMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSD 634
Query: 229 GGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKG 288
GGLG +++ D N+ALL K +W L+ + L+ +V + +Y R L++ S S W+
Sbjct: 635 GGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRS 694
Query: 289 ILRARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLV--VNN 345
++ AR + G R+G+G S S+W + W I D L ++ L+ +N
Sbjct: 695 MISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSN 754
Query: 346 AWDFS-----------KLFTSIP------EEMKQWFLEVS-----PSVQNTSHDVWTWGE 383
W+ L +++P E+ W + S +T+ G
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGT 814
Query: 384 SELGLDL--------EAQSSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIRE 435
+ +G DL + Q + F+W L +PV+ + + C C E
Sbjct: 815 TLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEE 874
Query: 436 DGIHSLRDCTHSRELW------SRMGAGRWNNFWTLNLSDWITLHARSDHAVKFLAGLWG 489
H+L C +R++W + G N+ +T NL + + +W
Sbjct: 875 SINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFT-NLDHLFWRIPSGVDSAPYPWIIWY 933
Query: 490 IWKWRCNMV---MDTAPWTIDTAWRKIAHDHDDFLKFMQPQ----LSHDDSFWLSVVWKP 542
IWK R V +D P I K A + + + LS D + V +
Sbjct: 934 IWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRDVSQD 993
Query: 543 PPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAHYDNG-NAFIAEMLALRDGL 601
+ +DGS+++ + GTG S G T A+ + EM AL +
Sbjct: 994 TTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAM 1053
Query: 602 KIAWEQGCRRLICESDCLELVRNLAS-VDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDR 660
K + + +DC +LV+ ++S +W + + L E+++ ++ I R
Sbjct: 1054 KCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVY---LEELQSDREEFTNFSLSLISR 1110
Query: 661 EGNRVADWLAKR 672
N AD LA++
Sbjct: 1111 SANVKADKLARK 1122
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 186 bits (473), Expect = 2e-45
Identities = 135/484 (27%), Positives = 218/484 (44%), Gaps = 49/484 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SHLLFADD LLF +A +Q Q + + + S+G +N K + + + RD
Sbjct: 1043 PGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKCSILFGNSLPIASRD 1102
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I I KYLG P GGR+ +GRF L E I +K+ W N L+ G+ L
Sbjct: 1103 AITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLI 1162
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+VI A+P Y M +F LP S+ + R+F W G+R + W ++ + KS GGL
Sbjct: 1163 KAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGL 1222
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G KD+ N ALL + W L+ N + L +V++ KY + +I++ ++S W+ I
Sbjct: 1223 GFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEH 1282
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLH-LRDLVVNNA-WD 348
+ ++ G +R+G G S +W + W P + ++ + DL+++N WD
Sbjct: 1283 GLELVKKGIIWRIGNGRSVRVWQDPWLPRD--LSRRPITPKNNCRIKWVADLMLDNGMWD 1340
Query: 349 FSK---LFTSIPEEM----------KQWFLEVSP------SVQNTSHDVWTWGESELGLD 389
+K +F + E+ ++ F+ P SV+ W + E
Sbjct: 1341 ANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLAENWAKEEASSS 1400
Query: 390 LEAQSSRES-------------EFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIRED 436
+ R++ + F W + LP + +L S+ C C +ED
Sbjct: 1401 SSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKED 1460
Query: 437 GIHSLRDCTHSRELWSRMGAGRWNNFWTLNLSD------WI--TLHARSDH-AVKFLAGL 487
+H+L C ++ LW M + +N +L + D W+ L DH FL L
Sbjct: 1461 TMHALCRCPQAKHLWLAM---KESNDLSLRMDDHLLGPSWLFNRLALLPDHEQPMFLMVL 1517
Query: 488 WGIW 491
W IW
Sbjct: 1518 WRIW 1521
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 180 bits (457), Expect = 1e-43
Identities = 121/451 (26%), Positives = 198/451 (43%), Gaps = 53/451 (11%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +S+LLFADD LLF +A + ++V + L ++ +G +N K + + S+ +
Sbjct: 1314 PGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEASPSSVSE 1373
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
DIR + N +YLGFP GR+ +GRF L I +++ W N L+ G+ L
Sbjct: 1374 DIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSGGKEILI 1433
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+VI A+P Y M +F P S+ + + R+F W +G+R + W ++ + K +GGL
Sbjct: 1434 KAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNGRRRTHWRAWDSLTKAKINGGL 1493
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D N ALL + W L++ N L QV++ KY ++ + A++S W GI
Sbjct: 1494 GFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANASPTWHGIEY 1553
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLH-LRDLVV-NNAWD 348
D L+ G +R+G GNS IW + W P + +L + DL+ + WD
Sbjct: 1554 GLDLLKKGIIWRIGNGNSVRIWRDPWIPRD--LSRRPVSSKANCRLKWVSDLIAEDGTWD 1611
Query: 349 FSKLFTSIPEEMKQWFLEVSPSV-------QNTSHDVWTWGESELG-------------- 387
+K+ Q+FL++ + D W + G
Sbjct: 1612 SAKI--------NQYFLKIDADIIQKICISARLEEDFIAWHPDKTGRFSVRSAYKLALQL 1663
Query: 388 LDLEAQSSRES-------------------EFFVWLCLHDALPVNSKRFHCHLANSEACS 428
D+ SS S F W ++L + +L + C
Sbjct: 1664 ADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAWRVASNSLATMENKKKRNLERFDVCG 1723
Query: 429 RCSYIREDGIHSLRDCTHSRELWSRMGAGRW 459
C +ED H+L C H+ LW + G++
Sbjct: 1724 ICDREKEDAGHALCRCVHANSLWVNLEKGKY 1754
Score = 48.5 bits (114), Expect = 7e-04
Identities = 38/141 (26%), Positives = 67/141 (46%), Gaps = 2/141 (1%)
Query: 540 WKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAHYDN-GNAFIAEMLALR 598
W+ P N MK+NVDGSF + G G LR+ G+ + D+ AE+ A
Sbjct: 1777 WERPRNGWMKLNVDGSFDINSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACV 1836
Query: 599 DGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWI 658
+GL +A + E+DC +++ L D +I E ++++ +I I+ +
Sbjct: 1837 EGLHLALHWTLLPIQVETDCSSVIQLLNHPD-KDRSVLANIAQEAKSLMAGDRQIAISKV 1895
Query: 659 DREGNRVADWLAKRGASIALS 679
R N ++ +LA + + +LS
Sbjct: 1896 QRSQNVISHFLANKARAESLS 1916
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 173 bits (439), Expect = 2e-41
Identities = 87/258 (33%), Positives = 140/258 (53%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HL FADD L FCQ++ Q + D + SG K+N+ KS VH + ++
Sbjct: 1036 PGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQN 1095
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I I GKYLG P GR R FN+++E + ++ ++W L+ AG+ +
Sbjct: 1096 RLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIML 1155
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV +MP Y M F LP +I+ I+ + +F W K + +R + W + K GGL
Sbjct: 1156 KSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGL 1215
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K VW ++ N N L+ ++M+ +Y R+ +IL+A + S W +L
Sbjct: 1216 GFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1275
Query: 292 ARDRLRGGFKFRLGTGNS 309
D ++ G +F +G G +
Sbjct: 1276 GLDVIKKGSRFIVGDGKT 1293
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 170 bits (431), Expect = 1e-40
Identities = 110/387 (28%), Positives = 183/387 (46%), Gaps = 13/387 (3%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P VSHLLFA+D L FC+A+ Q ++ L+ + A SG +N KS V I+
Sbjct: 524 PSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKA 583
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
+I+ I + +G YLG P S G F+F+ + + ++ W L+ G+ +
Sbjct: 584 EIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMI 643
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV+A +PTY M F LP++I + A+ F WS RG + + W+ + K+ GGL
Sbjct: 644 KSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGL 703
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G + ++D N+ALL K +W L+ + L+ +V + +Y R L+ S S W+ I+
Sbjct: 704 GFRSVNDFNSALLAKQLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPSYGWRSIIS 763
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNAWDFS 350
AR ++ G R+G+G S S+W + W + P I++ + L VNN D
Sbjct: 764 ARSLVKKGLINRVGSGASISVWEDPW-----IPAQFPRPAISNGSVIDPSLKVNNLIDSR 818
Query: 351 KLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGLDL------EAQSSRESEFFVWL 404
F +I + + + F+ + + H + E L + + Q + F+W
Sbjct: 819 SNFWNI-DFLNEIFVPEDVLLISAMHLGSSTKEDSLDIKTLKAHIWKVQCPPKLRHFLWQ 877
Query: 405 CLHDALPVNSKRFHCHLANSEACSRCS 431
L +PV + C+RC+
Sbjct: 878 VLSGCVPVTENLRKRGINCDSGCARCA 904
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 169 bits (427), Expect = 4e-40
Identities = 138/566 (24%), Positives = 234/566 (40%), Gaps = 65/566 (11%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P VSHLLFADD LLF +A Q + + L + +G +N + + S +D
Sbjct: 662 PGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSALCPQERQD 721
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I+ + + K LG P GR+ +F + E +++ W L+LAG+ L
Sbjct: 722 GIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALI 781
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV A+PTYTM VF +P ++ +R+F W G++ + + W + K GGL
Sbjct: 782 KSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGL 841
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D+ N ALL + W L+++ + L +V++ KY + TI + + SS WKGI+
Sbjct: 842 GFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGIVH 901
Query: 292 ARDRLRGGFKFRLGTGN-SSIWYNDWSGHGNLCEHLPFVH--ITDTQLHLRDLVVNN--A 346
+ L+ G +R+G G+ + IW N W HG E+L + + +++R+L+V +
Sbjct: 902 GLELLKKGLIWRIGDGSKTKIWRNHWVAHG---ENLKILEKKTWNRVIYVRELIVTDTKT 958
Query: 347 WDFSKLFTSIPEEMKQWFLEVS-PSVQNTSHDVWTWGES---------ELGLDLEAQSSR 396
W+ + I EE L++ P + W + ++ L +L ++S
Sbjct: 959 WNEPLIRHIIREEDADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLARKTSE 1018
Query: 397 ES-------------------------EFFVWLCLHDALPVNSKRFHCHLANSEACSRCS 431
++ F W D L + + C C
Sbjct: 1019 QASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEMFGTCPICG 1078
Query: 432 YIREDGIHSLRDCTHSRELWSRMGAGRWNNFWTLNLSDWITLHARSDHAVKFLAGLWGIW 491
E G H+ +CT ++ L + + WTL ++ D + L L
Sbjct: 1079 QKEETGFHATVECTLAKALRASL-----REHWTLPDESLFSM-TGPDWLLVLLDRL---- 1128
Query: 492 KWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFWLSV---VWKPPPNQCM 548
++ RK D Q + + L+ W PP+
Sbjct: 1129 ---------SSEKKAQLPARKHMEDIKGKGPMFQDPCQKEQTCQLNAEKEKWSCPPDGSA 1179
Query: 549 KMNVDGSFRSDEGLMGTGGALRDSSG 574
K+NVD ++R++ G G +RD G
Sbjct: 1180 KLNVDAAYRTETGEASAGIIIRDCRG 1205
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 168 bits (425), Expect = 6e-40
Identities = 88/266 (33%), Positives = 146/266 (54%), Gaps = 1/266 (0%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HLLFADD + FC++ + L+ + +SG +N KS S+ I+
Sbjct: 500 PRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKT 559
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
+ + I I LV LGKYLG P GR R FN +++ I ++ +W + L+ AG+ +
Sbjct: 560 EAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTML 619
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV+A+MPTYTM F L S+ I A+ F W + ++ + WS + ++K GGL
Sbjct: 620 KSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGL 679
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G KD+++ N ALL K W ++++ + + V+++ KY R + L+ A+SS W+GI
Sbjct: 680 GFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICT 739
Query: 292 ARDRLRGGFKFRLGTG-NSSIWYNDW 316
+D ++ +G+G ++ +W W
Sbjct: 740 GKDLIKSQLGKVIGSGLDTLVWNEPW 765
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,323,520,299
Number of Sequences: 2540612
Number of extensions: 57174785
Number of successful extensions: 140718
Number of sequences better than 10.0: 657
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 139573
Number of HSP's gapped (non-prelim): 1039
length of query: 709
length of database: 863,360,394
effective HSP length: 135
effective length of query: 574
effective length of database: 520,377,774
effective search space: 298696842276
effective search space used: 298696842276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0108.16