BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0106.8
(1558 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1274 0.0
gb|AAO23078.1| polyprotein [Glycine max] 1149 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 1100 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 1071 0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 1048 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 1038 0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 1032 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 1027 0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 1003 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 998 0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 992 0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 985 0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 980 0.0
gb|AAL75999.1| putative polyprotein [Zea mays] 974 0.0
gb|AAX95226.1| retrotransposon protein, putative, unclassified [... 966 0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 960 0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] 949 0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 933 0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 927 0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 879 0.0
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1275 bits (3298), Expect = 0.0
Identities = 666/1453 (45%), Positives = 928/1453 (63%), Gaps = 69/1453 (4%)
Query: 96 HRSHLRAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWF 155
H+ A R VD P + G +A W+ ++E+ F +R E EK+E + + ++ W+
Sbjct: 219 HQPRFEAAPRRTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWW 278
Query: 156 QWWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRN 215
+ +++ W F++ RF+P+ + LL+V+Q G+V EY+E FE L + +
Sbjct: 279 RCSKDREQIYTWREFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPH 338
Query: 216 ADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGW 275
++L+ FLNGL+ ++ ++ +LA++++ A L+E
Sbjct: 339 VTSDILESAFLNGLRRSLRDQVVRCRPVNLADIVEIAKLIE------------------- 379
Query: 276 KEKGGVGGRYYSSTGDSMGRIANSY-VNFQSKGGTG---NQDNEGKSLQNKGGTGNQDTE 331
S R A SY V Q++ T NQ + G + ++ T
Sbjct: 380 ----------------SQERNAVSYQVRNQARTNTAPFNNQVSTGSRVVDRAPTRQPFIP 423
Query: 332 GKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQ--LILMEVEED-- 387
+ + G E C CGD+W + H C + + I EVEE+
Sbjct: 424 SRDTTRASGSG---------EARNSNPCRYCGDRWFQGHKCKPQKLKGLAITEEVEEESP 474
Query: 388 ---EEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGA 444
E E + EE D E KV+ LS + E + +S K++G IGN +V++L+D GA
Sbjct: 475 LIEELNEPLTEEEGDPEPAEGFKVMTLSSLNDE--SQEQSMKMRGYIGNTKVVLLVDSGA 532
Query: 445 TINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGL 504
T NFIS+ LV E V T + V+VG G ++SG C ++ LEVQGI +Q +++ L
Sbjct: 533 TCNFISEALVREKGWLVTQTRSFGVKVGGGRIIKSSGKCVDIPLEVQGIEFVQDYYLFDL 592
Query: 505 GGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQ 564
G ++VLG WLA LG AN+++L I W + L G+P +C+ + +S++ +
Sbjct: 593 GDLDLVLGFSWLAGLGETRANWRDLRISWQIGRTWVSLYGDPDLCRGQISMRSMERVIKY 652
Query: 565 EAEGYYLS----YEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQ 620
Y L +E +K+EE+T + ++++L++Y VFQ P+ LPP R +HAI LQ
Sbjct: 653 TGTAYLLELASLFESKKQEEQTALQ--PAIQRLLDQYQGVFQTPQLLPPVRNREHAITLQ 710
Query: 621 EGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVD 680
EG+S NIRPYRY F QKNEIEKLV+EMLN+ IIR S SP+SSP +LVKKKDGGWRFCVD
Sbjct: 711 EGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVD 770
Query: 681 YRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEG 740
YRA+N+ATIPDK+PIP+I+ELLDE+ A VFSKLDLKSGY QIRMK D+ KTAF+THEG
Sbjct: 771 YRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIRMKLSDVEKTAFKTHEG 830
Query: 741 HYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQ 800
HYE+LV+PFGLTNAPSTFQ++MN + RPYLRKFVLVFF DIL+YS + + H HL VLQ
Sbjct: 831 HYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHLKHLETVLQ 890
Query: 801 VLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLG 860
+L + AN KKC+FG I YLGH+IS+ GVA DP K++ ML WP+PK V LRGFLG
Sbjct: 891 LLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKSVTELRGFLG 950
Query: 861 LTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPF 920
TGYYRRFVKNY ++A+PL LKKNSF W E AT AF LK ++ +PVLV P+F + F
Sbjct: 951 FTGYYRRFVKNYGQIARPLRDQLKKNSFDWNEAATSAFQALKAAVSALPVLVLPDFQQEF 1010
Query: 921 ILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGS 980
+ETDASG G+GAVL Q R +A++S+ S + + +SVYEREL+A+V AV KW+HYL
Sbjct: 1011 TVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSVYERELLAIVKAVTKWKHYLSSK 1070
Query: 981 QFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQFSA 1040
+F+I TDQRSLR L +Q+ + QQ+W SKL G + I+YKPG++NK ADALSR+ A
Sbjct: 1071 EFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGVDNKVADALSRRPPTEA 1130
Query: 1041 ISSVQCA-----EWADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLP 1095
+S + + L+AEI D ++L+ A + + + G + K +V+P
Sbjct: 1131 LSQLTITGPPTIDLTALKAEIQQDHELSQILKNWAQGDHHDSDFTVADGLIYRKGCLVIP 1190
Query: 1096 KGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYE 1155
GS I +L++FH + +GGH G +T+KR+++ YW G++ D+ NY++ C++CQ NKY
Sbjct: 1191 VGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQICQENKYS 1250
Query: 1156 ALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNA 1215
L+PAG L PLPIP Q W+D+S+DF+ GLP + + ILVVVDR +KY+HFI L HP+ A
Sbjct: 1251 TLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNCILVVVDRLSKYSHFIPLKHPFTA 1310
Query: 1216 KEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTE 1275
K + E FI++VVKLHGFP ++VSDRDR+FLS FWSE+FKL GT L+ S+AYHPQTDGQTE
Sbjct: 1311 KTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQTDGQTE 1370
Query: 1276 VVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGN 1335
VVNRC+E+YLRC G +P W +WL WAE+WYNT+YHSA KTTPF+A+YGRE PV+ +
Sbjct: 1371 VVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPPVLLRYG 1430
Query: 1336 DSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPY 1395
D T+ VE+ +R+ +L EL+ NLE AQ +M++ A+K RRDV +E+ + VYLK++PY
Sbjct: 1431 DIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAADKSRRDVAFEIDEWVYLKLRPY 1490
Query: 1396 KLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQ 1455
+ S+A R N+KLS RY+GP+ ++ +I AYKLQLPE S +HPVFH+S LK+AV
Sbjct: 1491 RQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHSTIHPVFHVSQLKRAVPPSFT 1550
Query: 1456 SQPLPAALTEEWELKVEPEAIMDTRE-NRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFP 1514
Q LP L+ E PE ++D R+ N + EVL++W L T E +WE L+ Q+P
Sbjct: 1551 PQELPKILSPTLEWNTGPEKLLDIRQSNTNSGPEVLVQWSGLSTLESTWEPLLTLVQQYP 1610
Query: 1515 NHQLEDKLSLQGG 1527
+ LEDK+SL G
Sbjct: 1611 DFDLEDKVSLLRG 1623
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 1149 bits (2973), Expect = 0.0
Identities = 621/1440 (43%), Positives = 867/1440 (60%), Gaps = 39/1440 (2%)
Query: 107 RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 166
++D P F+G + W+ K E+FF +A+++ + + ++ + W+Q ++ +
Sbjct: 99 KLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEPFSS 158
Query: 167 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFL 226
W+ F +AL F P+ P L + Q +V EY F L + E + F+
Sbjct: 159 WQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILDCFV 218
Query: 227 NGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYY 286
+GLQEEI ++K L + + A L EEK T+ PK
Sbjct: 219 SGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTS----PPK------------------ 256
Query: 287 SSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLT 346
+ T ++ R S + K NQ N+ T K + ++++
Sbjct: 257 TKTFSNLARNFTSNTSATQKYPPTNQKNDNPKPNLPPLLPTPST--KPFNLRNQNIKKIS 314
Query: 347 QTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEG 406
E+Q R K LC+ C +K+ H C N Q++L+++EE +E++ + E ++
Sbjct: 315 PAEIQLRREKNLCYFCDEKFSPAHKCP--NRQVMLLQLEETDEDQTDEQVMVTEEANMDD 372
Query: 407 KVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSE 466
LSLN+ G + + G++G V IL+D G++ NFI + L++PV
Sbjct: 373 DTHHLSLNAMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPN 432
Query: 467 YVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANF 526
V VGNG G+ + L L +QG + ++L + G +V+LG WLA+LG A++
Sbjct: 433 LRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADY 492
Query: 527 QELIIQWVSQGQKMVLQGEPSVCKVAANWKSIK-ITEQQEAEGYYLSYEYQKE-EEKTEA 584
L +++ + + LQGE + A + + + E + QKE E T
Sbjct: 493 AALTLKFFQNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPEDTLK 552
Query: 585 EVPEGMRK----ILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNE 640
++P + +L Y +VF P LPP+R DHAI L++G+ +RPYRYP QK++
Sbjct: 553 DLPTNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQ 612
Query: 641 IEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDE 700
IEK+++EML GII+ S SPFS P +LVKKKDG WRFC DYRA+N T+ D FP+P +DE
Sbjct: 613 IEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDE 672
Query: 701 LLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQA 760
LLDE+ A FSKLDL+SGYHQI ++ ED KTAFRTH GHYE+LV+PFGLTNAP+TFQ
Sbjct: 673 LLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQC 732
Query: 761 LMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPE 820
LMN++ + LRKFVLVFF DILIYS + + H HL VLQ LK++ L A KCSFG E
Sbjct: 733 LMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTE 792
Query: 821 IIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLN 880
+ YLGH +S GV+ + +K++ +LDWP P VK LRGFLGLTGYYRRF+K+Y+ +A PL
Sbjct: 793 VDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLT 852
Query: 881 QLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGR 940
LL+K+SF W EA AFVKLK+ MT PVL P+F +PFILETDASG G+GAVL Q G
Sbjct: 853 DLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGH 912
Query: 941 PVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIM 1000
P+AY SK L+ R Q +S Y REL+A+ A+ K+RHYLLG++F+I TDQRSL+ L DQ +
Sbjct: 913 PIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQ 972
Query: 1001 GEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQFSAISSVQCAEWADLEAEILGDE 1060
EQQ W+ K +GYDF+I+YKPG +N+AADALSR A S +L A ++ D
Sbjct: 973 TPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFML-AWSEPHSIFLEELRARLISDP 1031
Query: 1061 RYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIF 1120
+ K L E QG A Y ++ G L +KDR+V+P + +L+E+H + +GGHAGI
Sbjct: 1032 -HLKQLMETYKQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGIT 1090
Query: 1121 RTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDF 1180
RT R+ A FYW M+ D++ Y+QKC +CQ+ K PAG LQPLPIP Q W D++MDF
Sbjct: 1091 RTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDF 1150
Query: 1181 IGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDR 1240
I GLP + G I+VV+DR TKYAHFI L YN+K +AE F+ +VKLHG P SIVSDR
Sbjct: 1151 ITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDR 1210
Query: 1241 DRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWL 1300
DRVF STFW +FKL GT L SSAYHPQ+DGQ+EV+N+C+E YLRC T PK W K L
Sbjct: 1211 DRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKAL 1270
Query: 1301 SWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKS 1360
WAEFWYNT YH ++ TPF+ALYGRE P + + S+ EV + +R+ +L +LK
Sbjct: 1271 PWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAKLKI 1330
Query: 1361 NLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIA 1420
NL +AQ M++QA+K R DV +++GD V +K+QPY+ S R NQKLS RY+GP+ ++A
Sbjct: 1331 NLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLA 1390
Query: 1421 KINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALT-EEWELKVEPEAIMDT 1479
KI AYKL+LP +++HPVFH+S L K N Q LP LT E ++P I+ +
Sbjct: 1391 KIGDVAYKLELPSAARIHPVFHVSQL-KPFNGTAQDPYLPLPLTVTEMGPVMQPVKILAS 1449
Query: 1480 R---ENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDVANPSSR 1536
R + ++L++W++ E +WED + +P LEDK+ +G +V N SR
Sbjct: 1450 RIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNVTNGMSR 1509
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 1100 bits (2846), Expect = 0.0
Identities = 614/1536 (39%), Positives = 904/1536 (57%), Gaps = 85/1536 (5%)
Query: 8 MESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHNSVSTA 67
++SRV LE ++ E + +QF +L + LSR + R + R S+
Sbjct: 22 LDSRVTRLETTVAEQHKEMMKQFADLYAV-LSRSTAGKMVDEQSTLDRSAPRSSQSME-- 78
Query: 68 RTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGNDAYGWVTKVER 127
+R+G R A + +H++ ++L + ++D P F+G W+ KVE
Sbjct: 79 -----NRSGYPDPYRDARHQQVRSDHFNAYNNLTRLG--KIDFPRFDGTRLKEWLFKVEE 131
Query: 128 FFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA----WEPFKQALFRRFQPALL 183
FF + E K++M I + A W Q + + + W+ + + L RF+
Sbjct: 132 FFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKERFEDD-C 190
Query: 184 QNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPAD 243
+P L +++ +++Y + FEL+ + N E L V+L GL+ + + ++++
Sbjct: 191 DDPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHVRMFQPQ 249
Query: 244 DLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMGRIANSYVNF 303
+ + E+ + PK+ W S R A +
Sbjct: 250 TVRHCLFLGKTYEKAH-------PKKPANTTW----------------STNRSAPT---- 282
Query: 304 QSKGGTGNQDNEGKS-LQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKC 362
GG EG+S + G GN +QP+K ++Q E+ +R KGLC+ C
Sbjct: 283 ---GGYNKYQKEGESKTDHYGNKGNFKPVSQQPKK-------MSQQEMSDRRSKGLCYFC 332
Query: 363 GDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSN 422
+K+ EH K QL M+V DEE E+ EE + + + + Q+S+N+ G+
Sbjct: 333 DEKYTPEHYLVHKKTQLFRMDV--DEEFEDAREELVNDD---DEHMPQISVNAVSGIAGY 387
Query: 423 RSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGV 482
++ +VKG + + ILID G+T NF+ + +L V V V +G K R G
Sbjct: 388 KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRKLRVEGK 447
Query: 483 CKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVL 542
+ ++Q ++ L G ++VLG+ WL +LG I F++L +++ QK++L
Sbjct: 448 VTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLL 507
Query: 543 QG--EPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEV------------PE 588
G SV +V K+ K+ + QE + Q+ E TE E+
Sbjct: 508 HGLTSGSVREV----KAQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEES 563
Query: 589 GMRKILEEYPEVFQEPKGLPP-RRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKE 647
+ ++L EYP++F EP LPP R +H I+L EG++ N RPYRY +QKNEI+KLV++
Sbjct: 564 VVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVED 623
Query: 648 MLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGA 707
+L +G ++ S+SP++SP +LVKKKDG WR CVDYR +N T+ D FPIP+I++L+DE+G
Sbjct: 624 LLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGG 683
Query: 708 AVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLR 767
AV+FSK+DL++GYHQ+RM +DI KTAF+TH GH+EYLV+PFGLTNAP+TFQ LMN + +
Sbjct: 684 AVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFK 743
Query: 768 PYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHV 827
P+LRKFVLVFF DIL+YS + E H+ HL+ V +V++ N L A KC+F P++ YLGH
Sbjct: 744 PFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHF 803
Query: 828 ISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNS 887
IS G+ DP+KIK + +WP P +K LRGFLGL GYYRRFV+++ +A PL+ L K ++
Sbjct: 804 ISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDA 863
Query: 888 FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSK 947
F+WT A QAF LK + PVL P FDK F++ETDA G+G+GAVLMQEG P+AY+S+
Sbjct: 864 FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISR 923
Query: 948 TLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKW 1007
L + S+YE+EL+AV+ AV+KWRHYLL S F+I TDQRSL++L +QR+ QQ+W
Sbjct: 924 QLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQW 983
Query: 1008 MSKLMGYDFEIKYKPGIENKAADALSR----KLQFSAISSVQCAEWADLEAEILGDERYR 1063
+ KL+ +D+EI+Y+ G EN ADALSR ++ A++ V+C D++A D + +
Sbjct: 984 LPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYANDSQLQ 1043
Query: 1064 KVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTY 1123
++ L +S + + L K +IV+P T+L H + +GGH+G T+
Sbjct: 1044 DIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTH 1103
Query: 1124 KRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGG 1183
+R+ LFYW+GM DIQ Y++ C CQ+ K + G LQPLPIP W+++SMDFI G
Sbjct: 1104 QRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEG 1163
Query: 1184 LPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRV 1243
LP + GK I+VVVDR +K AHFIALSHPY+A +A ++ V KLHG PTSIVSDRD V
Sbjct: 1164 LPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVV 1223
Query: 1244 FLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWA 1303
F S FW E F L G LK +SAYHPQ+DGQTEVVNRC+ETYLRC+ +P+ W KWL+ A
Sbjct: 1224 FTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALA 1283
Query: 1304 EFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLE 1363
E+WYNTNYHS+ + TPF+ +YG+ PV + V V + ER +L LK +L
Sbjct: 1284 EYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLM 1343
Query: 1364 KAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKIN 1423
+AQ+RM+Q A++HR + ++E+GD VY+K+QPY+ +S+ R+NQKLSP+Y+GPY II +
Sbjct: 1344 RAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCG 1403
Query: 1424 PAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENR 1483
AYKL LP SQVHPVFH+S LK V + LP+ + + +E KV + + NR
Sbjct: 1404 EVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFE-KVPEKVVERKMVNR 1462
Query: 1484 DGD--LEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQ 1517
G +VL++W + P E +WE L FP +
Sbjct: 1463 QGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEFE 1498
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 1071 bits (2769), Expect = 0.0
Identities = 577/1443 (39%), Positives = 858/1443 (58%), Gaps = 92/1443 (6%)
Query: 103 VTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQW----W 158
+ G R++IP+F+G D W+ + E+F+ +S + + + + ++ +A+ W++ W
Sbjct: 203 IKGPRLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPW 262
Query: 159 EEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVME-----YKENFELLAAPM 213
+ T W + + RF A +VKQ +E ++E +L+
Sbjct: 263 QLIT----WPQWCAMVSTRFSAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREH 318
Query: 214 RNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 273
+ L F+ GL+ +IK D
Sbjct: 319 PYLQEQYLNSCFIGGLRGDIK-----------------------------------HDVC 343
Query: 274 GWKEKGGVGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGK 333
G K +G + +Y+ + + +NF QN+ G
Sbjct: 344 GHKPQGLLESYWYTKNYERAANARKNLLNFNRN-----------RFQNQAGP-------I 385
Query: 334 QPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKN-YQLILMEVEEDE---E 389
Q N GQ Q E +E + C+ C + W +H C +K +LME EE + E
Sbjct: 386 QGRNVVNRGQPREQVEKKEERK---CWFCKEPWFPKHQCKVKKALNALLMEGEEGKDEGE 442
Query: 390 EEEIFEEAEDGEFVLEG---------KVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILI 440
E E+ ED + E +++ +S N+ G T +F V +I R + L+
Sbjct: 443 EGELTGNQEDCKLEKEEAPPDDENQEELMFVSHNAVYGTTRPDTFSVIIQINGRRAVGLV 502
Query: 441 DCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFF 500
D G+T F+ QD V P+++T V V G + ++ L ++QG F
Sbjct: 503 DSGSTSTFMDQDYAVRNHCPLVSTDAKKVVVAGGGELKSEVQVPELVYQIQGETFSNKFN 562
Query: 501 ILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKI 560
I+ L G +V+LG DW+ I + ++ + +++G+K V+ + + S K+
Sbjct: 563 IIPLKGYDVILGADWIYKYSPITLDLKKRELG-ITKGEKTVVIQDFTRPGKHLWVDSKKV 621
Query: 561 TEQQEAEGYYLSYEYQK-EEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQL 619
+ G ++ + +EE+T E+PE +++IL+E+P V ++PKGLPPRR DH I L
Sbjct: 622 DQILRKGGLGCLFQITRVKEEETSHEIPEDIKEILQEFPAVLKDPKGLPPRRNCDHVITL 681
Query: 620 QEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCV 679
+ GA PN+RPYR P YQK +EK++ E++ S I+ S P+SSPA++V+KKDG WR CV
Sbjct: 682 KSGAEPPNLRPYRVPHYQKEAMEKIIAELIESKEIQVSDIPYSSPAVMVRKKDGSWRLCV 741
Query: 680 DYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHE 739
DYR +N T+ +KFP+PII++LLDE+ A VFSKLDL+SGYHQIRM +DIPKTAFRTH
Sbjct: 742 DYRQLNAQTVKNKFPMPIIEDLLDELNGAKVFSKLDLRSGYHQIRMATQDIPKTAFRTHL 801
Query: 740 GHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVL 799
GHYEY V+PFGLTNAP+TFQ+LMNQVL P+LRK+VLVFF DILIYSK+ HK+H+R V+
Sbjct: 802 GHYEYQVMPFGLTNAPTTFQSLMNQVLAPFLRKYVLVFFDDILIYSKDWAEHKEHIRQVM 861
Query: 800 QVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFL 859
+VL+EN LV KKC+FG P + YLGH+ISQ GVA DP K++ + +P PK V LR FL
Sbjct: 862 KVLEENKLVVKLKKCAFGLPSVTYLGHIISQDGVATDPKKVEKIATYPTPKSVTDLRKFL 921
Query: 860 GLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKP 919
G+TGYYRRF+KNY + +PL+ +LKK FQW E T+AF LK M T PVL P+F K
Sbjct: 922 GMTGYYRRFIKNYGIVCRPLHDMLKKEGFQWEREQTEAFETLKTHMCTSPVLSLPDFTKE 981
Query: 920 FILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLG 979
F++E DA G G+GAVLMQ GRP+AY SKTL +A A+S+YE+E MA++ A++KWRHY+LG
Sbjct: 982 FVIEADACGNGIGAVLMQSGRPLAYFSKTLGPKAAAQSIYEKEAMAILEALKKWRHYVLG 1041
Query: 980 SQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSR---KL 1036
S+ +I TDQ+SL+F+ +QR++ Q K + KLM YD+ I+YK G EN ADALSR
Sbjct: 1042 SRLIIKTDQQSLKFMMNQRLVEGIQHKLLLKLMEYDYSIEYKAGKENLVADALSRIPPAE 1101
Query: 1037 QFSAISSVQCAEWA-DLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLP 1095
Q AI++V EW D++ GD + K+L + T+G++ Y + G L YK RI +
Sbjct: 1102 QCQAITTV-IPEWVRDIQRSYEGDVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRIYVG 1160
Query: 1096 KGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYE 1155
+ + +++ +H +A GGH+G+ TY RI +LFYW G+K ++ ++++C +CQ K E
Sbjct: 1161 ENTEIREELIRSYHSSAFGGHSGMRATYHRIKSLFYWPGLKKAVEGFIRECPICQVTKAE 1220
Query: 1156 ALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNA 1215
++ G L PL +P W I+MDF+ GLPK+ GKD ILVVVDR TKYAHFIA++HPY
Sbjct: 1221 HIHIPGLLDPLEVPDMAWAHITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHPYTV 1280
Query: 1216 KEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTE 1275
+++ E+F+ + +LHG P +I++DRDR+F S + E+FK +LKFS++YHPQTDGQTE
Sbjct: 1281 EQVVELFMNNIHRLHGMPMAIITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDGQTE 1340
Query: 1276 VVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGN 1335
VN+C+E+YLR +T +P +W WL+ AE+WYNT YH++I+ TPF+ALYG P I + +
Sbjct: 1341 RVNQCLESYLRSMTFQEPTRWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQINEFS 1400
Query: 1336 DSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPY 1395
+E +++ I+++LK +L +AQ R++ A+++R + VGD+VYLK+QPY
Sbjct: 1401 VPCNVSEEARVTIEQKDAIIQKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKLQPY 1460
Query: 1396 KLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQ 1455
+ + R + KL ++YGP+ I+ K+ AYKLQLPEGS +HPVFH+S LKK + +
Sbjct: 1461 RQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGSRAV 1520
Query: 1456 SQPLPAALTEEWELKVEPEAIMDTRENRDGDLEV---LIRWKDLPTFEDSWEDFSKLLDQ 1512
++ + ++K EP A++ R G + V L+ W +L E +WED S +
Sbjct: 1521 PMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVLWHNLSPSEATWEDASMIQSM 1580
Query: 1513 FPN 1515
FP+
Sbjct: 1581 FPS 1583
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 1048 bits (2710), Expect = 0.0
Identities = 574/1447 (39%), Positives = 849/1447 (58%), Gaps = 95/1447 (6%)
Query: 103 VTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQW----W 158
+ G R++I +F G D W+ + E+FF ++ + + + + + RA WF+ W
Sbjct: 227 IKGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGVGLPW 286
Query: 159 EEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVME-----YKENFELLAAPM 213
+ T W + + RF A +VKQ G +E ++E +L+
Sbjct: 287 QVIT----WPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLVRRDH 342
Query: 214 RNADREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 273
F++GL+ +IK ++ G KP+ +
Sbjct: 343 PYLQEPYFTSCFISGLRGDIKHDVC-------------------------GQKPQGLLES 377
Query: 274 GWKEKGGVGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGK 333
W K Y +S AN N GG N GK++ NKG + K
Sbjct: 378 YWYAKN------YEKAANSRKAAANFNRNRLQTGG-----NTGKNVYNKGQPRQEGD--K 424
Query: 334 QPEKKWNGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKN--YQLIL-----MEVEE 386
+ EKK C+ C + W H C +K + L++ +EVEE
Sbjct: 425 KEEKK--------------------CWFCKEPWFPRHQCKVKQAIHALLVENEESVEVEE 464
Query: 387 DEEEEEIFEEAEDGEFV------LEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILI 440
D EEE + + GE + ++ +++ +S ++ GLT +F V K+ ++ + L+
Sbjct: 465 DSVEEEEIKGEKQGEKLPEQTENVQEELMSISQSAVYGLTRPDTFSVMIKVNGKKAVGLV 524
Query: 441 DCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFF 500
D G+T F+ ++ + + T V V G + ++ + ++ E+QG F
Sbjct: 525 DSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAGGGELKSELIVPGMEYEIQGESFTNSFN 584
Query: 501 ILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQG--EPSVCKVAANWKSI 558
+L L +++LG DW+ I + ++ ++ G+++ +Q +P +N K
Sbjct: 585 LLSLERYDIILGADWIFKYSPITLDLRKREMKITKGGRELEIQDFTKPGKYFQVSNKKMG 644
Query: 559 KITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQ 618
K+ ++ A G + ++ E +P+ ++ +L+ +P+V +EPKGLPPRR+ DH I
Sbjct: 645 KMIKKG-ALGCVIQINAITDQSNVEVGIPKDIQIVLQSFPKVLKEPKGLPPRRSCDHVIN 703
Query: 619 LQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFC 678
L+ G+ PN+RPYR P +QK +E ++ E+ + IR S SP+ SPA++V+KKDG WR C
Sbjct: 704 LKVGSEPPNLRPYRVPHFQKGAMEDIITELFRTQEIRISDSPYVSPAVMVRKKDGSWRLC 763
Query: 679 VDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTH 738
VDYR +N TI +KFP+PII++LLDE+ A VFSKLDL+SGYHQIRM E DIPKTAFRTH
Sbjct: 764 VDYRQLNAQTIKNKFPMPIIEDLLDELHGAKVFSKLDLRSGYHQIRMAEGDIPKTAFRTH 823
Query: 739 EGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIV 798
GHYEY V+PFGLTNAP+TFQALMNQVL P+LRKFVLVFF DILIYSK + H +H+++V
Sbjct: 824 LGHYEYNVMPFGLTNAPATFQALMNQVLAPFLRKFVLVFFADILIYSKTQSEHLEHIKLV 883
Query: 799 LQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGF 858
+Q L N LV KKC FG + YLGH+IS GV+ DP KI D+ + PK V +R F
Sbjct: 884 MQALSANQLVVRLKKCEFGLDRVSYLGHIISSEGVSTDPKKISDIKNRKPPKNVTEVREF 943
Query: 859 LGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDK 918
LG+ GYYRRF+K Y + +PL+ LLKK+ F+W + +AF LKE M PVL P+F +
Sbjct: 944 LGMAGYYRRFIKGYGVICRPLHDLLKKDGFKWGDTQQEAFELLKEKMCNSPVLALPDFSQ 1003
Query: 919 PFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLL 978
PF++ETDA G G+GAVLMQ+GRP+AY SK L +A A+SVYE+E +A++ A++KWRHY+L
Sbjct: 1004 PFVIETDACGIGIGAVLMQKGRPLAYFSKALGPKAAAQSVYEKEAIAILEALKKWRHYIL 1063
Query: 979 GSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSR---- 1034
G +I TDQ+SL+F+ QR++ Q K + KLM +D+ I+YK G EN ADALSR
Sbjct: 1064 GGSLIIKTDQQSLKFMMSQRLVEGIQHKLLLKLMEFDYVIEYKSGKENLVADALSRSPNL 1123
Query: 1035 KLQFSAISSVQCAEWA-DLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIV 1093
K + +V EW D++ D K+L + T G+ Y+L+ G L YK RI
Sbjct: 1124 KEEQCLPITVVVPEWVQDIKRSYEEDIFAHKILSLIETDGDPERHYKLESGLLKYKGRIY 1183
Query: 1094 LPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNK 1153
+ + + + +L+ +H + GGH+GI TY RI LFYW G+K +++Y+++C CQ K
Sbjct: 1184 VGETTEIRMLLLEAYHASYFGGHSGIRATYHRIKQLFYWPGLKKQVEHYIRECPTCQITK 1243
Query: 1154 YEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPY 1213
E ++ G L PL +P WT I+MDFI GLPK+ GKD ILVVVDR TKYAHF+ALSHPY
Sbjct: 1244 AEHIHIPGLLNPLEVPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFLALSHPY 1303
Query: 1214 NAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQ 1273
+++ ++F+ + KLHG P IV+DRDRVF S F+ E+FK KL+FS+A+HPQTDGQ
Sbjct: 1304 TVEQVVQIFMDNIHKLHGMPMVIVTDRDRVFTSNFFQEIFKTQKVKLRFSTAHHPQTDGQ 1363
Query: 1274 TEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFK 1333
TE VN+C+E+YLR +T +P++W WL+ AE+WYNT YH++I+ TPF+ALYG P I +
Sbjct: 1364 TERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQITE 1423
Query: 1334 GNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQ 1393
+E ++ LIL++LKS++ +AQ R++ A+K R + E+GD+VYLK+Q
Sbjct: 1424 FAIPCNMSEEARVTLEDKALILQKLKSSIGEAQRRIKFYADKGRSERTLELGDMVYLKLQ 1483
Query: 1394 PYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAG 1453
PY+ ++ R + KL +YYGP+ +I K+ AYKLQLP+G+ +HPVFH+S LKK + A
Sbjct: 1484 PYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDGAGIHPVFHVSQLKKHLGAR 1543
Query: 1454 VQSQPLPAALTEEWELKVEPEAIMDTR---ENRDGDLEVLIRWKDLPTFEDSWEDFSKLL 1510
P A+ + ++K EP A++ R + + + LI W++L E +WED S +
Sbjct: 1544 AIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDASYIQ 1603
Query: 1511 DQFPNHQ 1517
FPN Q
Sbjct: 1604 AAFPNFQ 1610
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 1038 bits (2683), Expect = 0.0
Identities = 564/1442 (39%), Positives = 842/1442 (58%), Gaps = 95/1442 (6%)
Query: 105 GRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE 164
G R++IP+F+G D W+ + E+FF ++ + + + + + RAL WF
Sbjct: 95 GPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWFGGIGLPWQV 154
Query: 165 RAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVME-YKENFE----LLAAPMRNADRE 219
AW + + RF A +VKQ G+ +E Y + FE L+ +
Sbjct: 155 IAWPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLVKRDHPYLQEQ 214
Query: 220 VLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKG 279
L F+ GL+ +IK ++ G KP+
Sbjct: 215 YLTSCFIGGLRADIKYDVC-------------------------GQKPQ----------- 238
Query: 280 GVGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKW 339
G+ Y+++ M N N GG N+G++ ++G N+ ++ EKK
Sbjct: 239 GLLETYWAANARKMVGNFNRNRNQNPLGG-----NQGRNANHRGQ--NRGEGDRREEKK- 290
Query: 340 NGGQRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAED 399
C+ C + W H C +K L+E ++ +E++E D
Sbjct: 291 -------------------CWFCKEPWFPRHQCKIKQAIHALLEEDDGQEDKETSNTGGD 331
Query: 400 GEFVLEGK-------------VLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATI 446
E E + ++ +S + +G + +F V KI R + L+D G+T
Sbjct: 332 EEEKKETEESATSENESPTEELMYISQTAVQGTSRPDTFSVLIKINGRTAVGLVDSGSTT 391
Query: 447 NFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGG 506
F+ QD + P+ T V V G + + + ++ E+QG F +L L G
Sbjct: 392 TFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMVPDISYEIQGECFTNQFKLLPLKG 451
Query: 507 TEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCK--VAANWKSIKITEQQ 564
+++LG DW+ + I + ++ I+ +++G K++L + + + K ++ ++
Sbjct: 452 YDIILGADWIYNYSPISLDLKQRILG-ITKGNKVILLQDFTKPNKHFQISGKRLEKMLKK 510
Query: 565 EAEGYYLSYEYQKEEEKTEAEV-PEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGA 623
A G + E + E V PE + I++++P V +EPKGLPP+R DH I LQ GA
Sbjct: 511 GALGMVIQVNVMSETVEEEGHVIPEDISDIIQQFPAVLKEPKGLPPKRECDHVINLQSGA 570
Query: 624 SIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRA 683
PNIRPYR P YQK +E ++ E++ S I+ S SP+SSPA++V+KKDG WR CVDYR
Sbjct: 571 VPPNIRPYRVPHYQKEAMENIINELIESKEIQTSDSPYSSPAVMVRKKDGSWRMCVDYRQ 630
Query: 684 INKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYE 743
+N T+ +KFP+PII++LLDE+ A +FSKLDL+SGYHQIRM E+D+ KTAFRTH GHYE
Sbjct: 631 LNAQTVKNKFPMPIIEDLLDELNGARIFSKLDLRSGYHQIRMAEKDVHKTAFRTHLGHYE 690
Query: 744 YLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLK 803
Y V+PFGLTN P+TFQ+LMN VL P+LR+FVLVFF DILIYSK H +H+++V+Q L+
Sbjct: 691 YQVMPFGLTNDPATFQSLMNHVLAPFLRRFVLVFFDDILIYSKTRAEHLEHVKLVMQALQ 750
Query: 804 ENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTG 863
+N+LV KKC+FG + YLGHVISQ GVA DP K+ + +WP PK+V +R FLG+TG
Sbjct: 751 DNHLVIKLKKCAFGLASVSYLGHVISQDGVATDPKKVGKIKNWPTPKDVTDVRKFLGMTG 810
Query: 864 YYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILE 923
YYRRF++ Y + +P++ +LKKN FQW + T AF LK + T PVL P+FD+ F +E
Sbjct: 811 YYRRFIQGYGTICRPIHDMLKKNGFQWGADQTTAFETLKHKLRTSPVLALPDFDQAFTIE 870
Query: 924 TDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFV 983
DA G G+GAVLMQ GRP+A+ SK L +A +S+YE+E MA++ A++KWRHY+LGS+ +
Sbjct: 871 ADACGVGIGAVLMQGGRPIAFFSKALGPKAAGQSIYEKEAMAILEALKKWRHYVLGSKLI 930
Query: 984 IHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQFSAIS- 1042
I TDQ+SL+F+ QR++ Q K + KLM YD+ I+YK G EN ADALSR Q A++
Sbjct: 931 IKTDQQSLKFMMGQRLVEGIQHKLLLKLMEYDYTIEYKSGKENLVADALSRLPQKEAVAD 990
Query: 1043 -----SVQCAEW-ADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPK 1096
+V EW D++ D + K+L + T + Y+L+ G L YK RI + +
Sbjct: 991 RCHPMTVVIPEWIVDIQRSYENDVQAHKILSLIGTAADPDREYKLEAGLLKYKGRIYVGE 1050
Query: 1097 GSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEA 1156
+ ++ +H ++ GGH+G+ T+ RI LFYW GM+ +++ ++++C CQ K E
Sbjct: 1051 ATDIRRQLITTYHSSSFGGHSGMRATHHRIKMLFYWHGMRGEVERFIRECPTCQITKSEH 1110
Query: 1157 LNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAK 1216
++ G L PL IP WT I+MDFI GLPK+ GKD ILVVVDR TKYAHFIAL+HPY+ +
Sbjct: 1111 VHIPGLLNPLEIPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIALAHPYDVE 1170
Query: 1217 EIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEV 1276
++ E F+ + KLHG P I++DRDR+F S+ + E+FK KL+FS+AYHPQ DGQTE
Sbjct: 1171 QVVEAFMNNIHKLHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHPQMDGQTER 1230
Query: 1277 VNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGND 1336
VN+C+E+YLR +T +P +W WL+ AE+WYNT +H+AI+ TPFKA+YG P I + +
Sbjct: 1231 VNQCLESYLRNMTFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSPPQINEFSV 1290
Query: 1337 SLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYK 1396
+E E+ IL +LK++L AQ+RM+ A+K+R + EVGD+VYLK++PY+
Sbjct: 1291 PCNISEEARVTIEEKEAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMVYLKLKPYR 1350
Query: 1397 LKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQS 1456
+ R + KL ++YGP+ ++ KI AYKLQLP+ +Q+HPVFH+S LKK +
Sbjct: 1351 QSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKKHLGKHAIP 1410
Query: 1457 QPLPAALTEEWELKVEPEAIMDTRENRDGDLEV---LIRWKDLPTFEDSWEDFSKLLDQF 1513
++ + ++K EP A++ R + V LI W++L E +WED S + F
Sbjct: 1411 MSNLPSVGPDGQIKTEPLAVLQRRMVPRKGVAVTQWLILWQNLSPAEATWEDASVIQAMF 1470
Query: 1514 PN 1515
P+
Sbjct: 1471 PS 1472
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 1032 bits (2668), Expect = 0.0
Identities = 553/1212 (45%), Positives = 758/1212 (61%), Gaps = 133/1212 (10%)
Query: 343 QRLTQTELQ-----ERSRKGLCFKCGDKWGKEHICSMKNYQLIL------MEVEEDEEEE 391
+R+ Q ELQ E+ RKG+CF+C W KEH C K +++ MEV E E
Sbjct: 283 RRVVQKELQLVKLDEKRRKGICFRCDGPWSKEHKCPNKELRVLTVINGFEMEVLESNSVE 342
Query: 392 EIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQ 451
E F ++ + +LS +S GL S + K+KG I E C F
Sbjct: 343 EEFHDSV-------AQFAELSFSSYMGLPSYTTIKMKGSICKGEW-----CHTQFYF--- 387
Query: 452 DLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEV-----QGIPIMQHFFILGLGG 506
+ + +G G + G+C + + + Q + + HF L LG
Sbjct: 388 -------------PNFHIRLGTGITVQGLGLCDKVTMTLPVGCGQELELTTHFITLDLGP 434
Query: 507 TEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEA 566
+V+LG+ WL +LG+ + N++ + ++ G+ + L+G+P + + KS
Sbjct: 435 VDVILGIAWLRTLGDCKVNWERHELSFLYHGRTVTLRGDPELDTFKMSLKS--------- 485
Query: 567 EGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIP 626
+ + Q +E LE Q KGLPP + +HAI L G
Sbjct: 486 --FSTKFRLQNKE--------------LEVSLNSHQNLKGLPPIKGNEHAISLLPGTRAI 529
Query: 627 NIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINK 686
++RPYRYP K +E LV EML++GIIR S SPFSSP +LVKKKD WRFCVDYRA+N+
Sbjct: 530 SVRPYRYPHAHKEAMEGLVSEMLDNGIIRASKSPFSSPVLLVKKKDQSWRFCVDYRALNR 589
Query: 687 ATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLV 746
ATIP+KFPIP+ID+LLDE+ A++FSKLDL++GYHQIRMK EDI KT FRTH+GH+E+LV
Sbjct: 590 ATIPNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQIRMKVEDIEKTTFRTHDGHFEFLV 649
Query: 747 LPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENN 806
+PFGL+NAP+TFQ+ MN +LRP+LRKFVLVFF DILIYS+NE+ H++HL +VL+VL+E+
Sbjct: 650 MPFGLSNAPATFQSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQ 709
Query: 807 LVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYR 866
AN+KK + I+Q GV+ DP+K M W P+ VK LRGFLGLTGYYR
Sbjct: 710 FYANRKK-----------PYHITQ-GVSTDPTKTVAMTKWVTPQSVKELRGFLGLTGYYR 757
Query: 867 RFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDA 926
RF+K Y LA+PL +LLKK+SF W+E A +AF LK M+T PVL P+F
Sbjct: 758 RFLKGYGTLARPLTELLKKDSFVWSESAQEAFDALKRAMSTAPVLALPDF---------- 807
Query: 927 SGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHT 986
GK G L+ + Q K VYERELMA+VL++QKW+HYL+G +FV+HT
Sbjct: 808 -GKVHG----------------LTSKEQLKPVYERELMAIVLSIQKWKHYLMGRRFVLHT 850
Query: 987 DQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQ--------- 1037
DQ+SL+FL +QR + + QKW++KL+ Y+F+I YK G++NKAAD LSR +Q
Sbjct: 851 DQKSLKFLQEQREVSMDYQKWLTKLLHYEFDILYKLGVDNKAADGLSRMVQPTGSFSSML 910
Query: 1038 FSAISSVQCAEWADLEAEILGDERYRKVLQEL--ATQGNSAIGYQLKRGRLLYKDRIVLP 1095
A + + DL EI + + +++E A QG SA Y +K GRL K R+++P
Sbjct: 911 LMAFTVPTVLQLHDLYEEIDSNAHLQHLVKECLSAKQGTSA--YTVKEGRLWKKQRLIIP 968
Query: 1096 KGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYE 1155
K S + +L E+H LGGH+G+ +T KRI F+WEGM DIQ +V KCE+CQR KY
Sbjct: 969 KDSKFLPLILAEYHSGLLGGHSGVLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYS 1028
Query: 1156 ALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNA 1215
L+PAG LQPLPIP+Q W DIS+DF+ GLP DR +KY HFI L HP+NA
Sbjct: 1029 TLSPAGLLQPLPIPTQVWEDISLDFVEGLP------------DRLSKYGHFIGLKHPFNA 1076
Query: 1216 KEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTE 1275
++A +FI EVVKLHGFP SIVSDRD FLS+FW + FKL+GTKLK+S+A+HPQTDGQTE
Sbjct: 1077 VDVARIFIHEVVKLHGFPASIVSDRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTE 1136
Query: 1276 VVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGN 1335
V+NR +ETYLRC + PK W ++L AE WYN+++H+ IKTTPFK LYGR+ P I +
Sbjct: 1137 VLNRTLETYLRCFASAHPKTWFQYLPRAELWYNSSFHTTIKTTPFKVLYGRDPPPIMRFE 1196
Query: 1336 DSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPY 1395
+ T E+E +R+L+L ++K +L AQ M+ +KHRR+V+++ + V+LK++PY
Sbjct: 1197 ANSTKNCELEGLLKQRDLMLADIKEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPY 1256
Query: 1396 KLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQ 1455
+ S+ KR QKL+ +Y+GP+ I+ +I AY+L+LPEGS++H VFH+S LK+ + Q
Sbjct: 1257 RQNSVTKRVCQKLAAKYFGPFEIMERIGKVAYRLKLPEGSKIHLVFHVSQLKQVLGDHHQ 1316
Query: 1456 SQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFPN 1515
PLP LT + E V PEA+++TR N DG LE L+ W+ LP ED+WE L QFP
Sbjct: 1317 VIPLPEVLTADNEFVVVPEAVLETRYNEDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPG 1376
Query: 1516 HQLEDKLSLQGG 1527
L+DKL ++GG
Sbjct: 1377 LALQDKLHVEGG 1388
Score = 107 bits (267), Expect = 3e-21
Identities = 55/160 (34%), Positives = 90/160 (55%)
Query: 97 RSHLRAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQ 156
R +R + V++PMF+G+ YGW+ +VERFFR EAE++ +V +++ AL W+
Sbjct: 119 RPRIRENLLKNVEMPMFDGSGIYGWIARVERFFRSGGYNEAEQLALVSVSVSGEALSWYN 178
Query: 157 WWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNA 216
W + +W K L RF L+ P L +KQ GSV EY + FE L++ +
Sbjct: 179 WAISRGDFVSWLKLKSGLMLRFGNLKLRGPSQSLFCIKQTGSVAEYVQRFEDLSSQVGGL 238
Query: 217 DREVLKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLE 256
D + L+G+FLNGL E++ + ++ +L E++ A +E
Sbjct: 239 DDQKLEGIFLNGLTGEMQELVHMHKPQNLPEMVAVARSME 278
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 1027 bits (2656), Expect = 0.0
Identities = 580/1441 (40%), Positives = 822/1441 (56%), Gaps = 91/1441 (6%)
Query: 103 VTGRR-----VDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQW 157
V GRR +D P F+G D WV E +F L ++ E K+ + M A W+Q
Sbjct: 121 VQGRRSWVPKMDFPKFDGTDVCVWVDNCETYFALYQITEGFKVSAASLNMIGDAAHWYQA 180
Query: 158 WEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNAD 217
W+++ WE ++A+ F+ + + LL + Q G+V EY+ F L +R D
Sbjct: 181 WKQERGWPTWEQLREAVLNEFEINIKRAKMEELLLLTQTGTVSEYRSKFLQLVYHIRLYD 240
Query: 218 REV----LKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKR 273
L F+ GL++E++ + + + + AL E
Sbjct: 241 PATSGLFLVSRFVMGLKDELRCFVAAQEPETVHQAARVALAFE----------------- 283
Query: 274 GWKEKGGVGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGK 333
G N V F+ G ++GK
Sbjct: 284 --------------------GAFCNRKVAFKKDVGNVKFGDKGKVPV------------- 310
Query: 334 QPEKKWNGGQRLTQTELQE-RSRKGLCFKCGDKWGKEHICSM-KNYQLILMEVEEDEE-- 389
G +L+E R GLCFKCG+K+ H C + QL MEV ++
Sbjct: 311 --------GDLWKAQQLKEYRRTHGLCFKCGEKYSPAHTCGKTEGAQLKTMEVSSSDDVL 362
Query: 390 EEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFI 449
+EI + E + + +L LSL + G ++ S +++ GN+ V+IL+D G++ +FI
Sbjct: 363 TDEILDVVTAFEQLPDDNML-LSLQAVAGTSATHSLQLRALAGNQVVIILVDSGSSHSFI 421
Query: 450 SQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEV 509
+ DL +L + V+V NG + +QG + +L +GG ++
Sbjct: 422 NADLCSKLNLSTDPIPVSTVKVANGETLQCEAQVSEFSWWIQGCTFVSSLKVLSMGGHDI 481
Query: 510 VLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQGEPS-VCKVAANWKSIKITEQQEAEG 568
VLGMDWL+ + N+ + +++ QG+ + LQG S + + S ++ + Q
Sbjct: 482 VLGMDWLSKFSPMTCNWADRWLEFTYQGKLVKLQGIQSHQLQYLSEVSSDQMMKWQVGND 541
Query: 569 YY-LSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPN 627
+ L+ ++ VP ++ +L++Y VFQ GLPP R DH+I L GA N
Sbjct: 542 IWALAVVDCLSSPLCDSAVPASIQDVLQKYSSVFQPSAGLPPHRELDHSIPLVPGAIPVN 601
Query: 628 IRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKA 687
RPYRY QK+EIEK V+EML SG+I S SPF+SP +LVKKKD WRFCVDYR +N
Sbjct: 602 SRPYRYSPAQKDEIEKQVQEMLESGLISRSCSPFASPVLLVKKKDNTWRFCVDYRRLNAI 661
Query: 688 TIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVL 747
TI +KFP+PI+DELLDE+ FSKLDL+SGYHQIRMKE D KTAF+TH GH+++ V+
Sbjct: 662 TIKNKFPLPIVDELLDELAGTRFFSKLDLRSGYHQIRMKETDEEKTAFKTHHGHFQFRVM 721
Query: 748 PFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNL 807
PFGLTNAP+TFQ LMN + PYLRKFVLVF DIL+YS + E H HL VLQVL+++ L
Sbjct: 722 PFGLTNAPATFQCLMNSIFEPYLRKFVLVFMDDILVYSPSLETHAIHLDTVLQVLQQHQL 781
Query: 808 VANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRR 867
A KCSF ++ YLGH+IS GVA DP K + M DWP+P V LRGFLGLTGYYR+
Sbjct: 782 SAKLSKCSFAASQLEYLGHIISADGVATDPEKTRIMRDWPVPTNVTELRGFLGLTGYYRK 841
Query: 868 FVKNYSKLAQPLNQLLKKNS-FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDA 926
FVKNY +A+PL LL+KN+ F WT+ A AF++LK M + PVL P+F K F+LETDA
Sbjct: 842 FVKNYGVIAKPLTVLLQKNAKFIWTDSANSAFLQLKHAMCSTPVLALPDFTKTFVLETDA 901
Query: 927 SGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHT 986
G+GAVL QEG P+A+ SK L Q S+YE+E +A+++A+ KWR YLL F I T
Sbjct: 902 CATGIGAVLSQEGHPIAFYSKALGMANQKLSIYEKEFLAIMMAIDKWRSYLLRGPFTIKT 961
Query: 987 DQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQFSAISSVQC 1046
D +SL L DQ + E Q+K M+KL+G ++ +YK G++NK+ADALSR A S
Sbjct: 962 DHQSLCHLDDQILGSELQRKAMTKLIGLQYKFQYKRGVDNKSADALSRVGHLFATVSGPY 1021
Query: 1047 AEW-ADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVL 1105
+W ++ D +++L ELA + G+ L G + D+I + S ++
Sbjct: 1022 PKWIQEVVNSYATDADAQQLLTELAVSSPNDKGFMLSGGLIKKHDKIWVGANSGLQSKLI 1081
Query: 1106 KEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQP 1165
FH + +GGH+GI TY R+ LF W GMK ++ +VQ+C VCQ+ K+E G LQP
Sbjct: 1082 AVFHSSPIGGHSGIHATYHRLKKLFVWTGMKQAVEEFVQQCGVCQQAKHEHCKYPGLLQP 1141
Query: 1166 LPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKE 1225
LPIP W DISMDFI GLP + G +TILVVVDRFTKYAHF++L HP++A ++AE+F+
Sbjct: 1142 LPIPEGSWQDISMDFIEGLPLSKGANTILVVVDRFTKYAHFLSLKHPFSASQVAELFLDR 1201
Query: 1226 VVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYL 1285
V +L+G P SIVSDRDRVF S+FW +F G L S+AYHPQ+DGQTE VN+C+E YL
Sbjct: 1202 VAQLYGMPKSIVSDRDRVFTSSFWKTLFARFGIPLNMSTAYHPQSDGQTERVNQCLEMYL 1261
Query: 1286 RCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRE------SPVIFKGNDSLT 1339
RC + P +W WL A+FWYNT++H+++K +P KALYG + + + +D +
Sbjct: 1262 RCAVANTPSKWASWLPLAQFWYNTSFHTSLKCSPHKALYGSDPSYGLLPSLSVEASDESS 1321
Query: 1340 SVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKS 1399
S + R+ L+ +L +AQN M+Q A+ R ++VGD V+LK+QPY S
Sbjct: 1322 SSKDATALLKARSFYSSTLQHHLARAQNHMKQVADSKRTLRVFQVGDSVFLKLQPYAQTS 1381
Query: 1400 LAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPL 1459
+ R KL+ +Y+GP+PI+ ++ AYKLQLP SQVH VFH+S LK +V + V P+
Sbjct: 1382 VVNRPCHKLAMKYFGPFPILERVGSVAYKLQLPPASQVHSVFHVSQLKPSVPSHV---PV 1438
Query: 1460 PAALTEEWELKVE---PEAIMDTRENRDGD---LEVLIRWKDLPTFEDSWEDFSKLLDQF 1513
+L + L VE P I+D R + G+ ++V +RW LP +WED+ + +F
Sbjct: 1439 YTSLPDVVALDVEDLIPTEILDCRMVKKGNAAIVQVRVRWGSLPDNMATWEDYDVIRTRF 1498
Query: 1514 P 1514
P
Sbjct: 1499 P 1499
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 1003 bits (2594), Expect = 0.0
Identities = 582/1470 (39%), Positives = 839/1470 (56%), Gaps = 79/1470 (5%)
Query: 93 HYHHRSHLRAVTGRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRAL 152
HY HR ++D P F+G D W K E +F ++ + + +I RA
Sbjct: 171 HYSHRVP-------KLDFPKFDGTDPQDWRMKCEHYFDVNNTYPGLWVRVAIIYFSGRAA 223
Query: 153 GWFQWWEEQTLERAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAP 212
W + + WE F AL +F + + ++Q G+V EY E F+ L
Sbjct: 224 SWLRSTKAHVRFPNWEDFCAALSDKFDRDQHELLIRQMDGIRQSGTVWEYYEQFDELMNK 283
Query: 213 MRNADREV----LKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPK 268
+ D V L F GL +I+ + L DL + ALL EE K
Sbjct: 284 LLVYDPVVNMHYLTHRFTEGLYRKIRNVVLLQRPRDLESALAVALLQEEVLETADEVTGK 343
Query: 269 EEDKRGWKEKGGVGGRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKG-GTGN 327
E K S G+S+GR S N + G +++ G G
Sbjct: 344 EVKK---------------SEGNSLGR---SVANLR-----GAYPLPTPPMRSGGINMGI 380
Query: 328 QDTEGKQPEKKWNGG--QRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVE 385
+ E K+ E + + G +RL+ + Q R++ GLC+ C +KW H CS QL ++
Sbjct: 381 KSEEKKESEVRRSSGTNERLSSLKAQRRAQ-GLCYICAEKWSPTHKCS-NTVQLHAVQ-- 436
Query: 386 EDEEEEEIFEEAEDG----EFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILID 441
E + E EDG + V+E ++ +SL + +G + ++ G+I +E+LIL+D
Sbjct: 437 --ELFTVLHESVEDGLSTTDHVVEQTLMAVSLQAVQGTETGGCMRMLGQIQGKEILILVD 494
Query: 442 CGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFI 501
G++ +FIS+ + L + V V GAK N + +QG + +
Sbjct: 495 SGSSASFISKRVASSLMGVLEQPVHVQVMVAGGAKLHCCSEILNCEWTIQGHVFFTNLKV 554
Query: 502 LGLGGTEVVLGMDWLA--SLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIK 559
L L +++LGMDWL S ++ + LII + G ++ L G S + A+ S +
Sbjct: 555 LELNNYDMILGMDWLMQHSPMTVDWTTKSLIIAYA--GTQIQLYGVRSDTEQCAHISSKQ 612
Query: 560 ITEQQEAEGY--------YLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRR 611
+ E + + EYQ++ +PE ++ +L E+ VF EPKGLPP R
Sbjct: 613 LRELNDRTAVSNLVQFCSVFALEYQEQ-------IPEVVQTVLTEFSSVFDEPKGLPPIR 665
Query: 612 TTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKK 671
DH I L GA N+RPYRY QKNEIE V+EML+ GII+ S+SPFSSP +LVKKK
Sbjct: 666 QFDHTIPLLPGAGPVNVRPYRYTPIQKNEIESQVQEMLSKGIIQPSSSPFSSPVLLVKKK 725
Query: 672 DGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIP 731
DG WRFCVDYR +N T+ +K+P+P+IDELLDE+ A FSKLDL+SGYHQIRM +D
Sbjct: 726 DGSWRFCVDYRHLNAITVKNKYPLPVIDELLDELAGAQWFSKLDLRSGYHQIRMHPDDEH 785
Query: 732 KTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELH 791
KTAF+TH GH+E+ VLPFGLT+AP+TFQ +MN VL LR+ VLVF DILIYSK+ E H
Sbjct: 786 KTAFQTHHGHFEFRVLPFGLTSAPATFQGVMNSVLATLLRRCVLVFVDDILIYSKSLEEH 845
Query: 792 KDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKE 851
HL+ V Q+L ++ L + KCSF Q E+ YLGH+I GV+ DP KI+ + WP P
Sbjct: 846 VQHLKTVFQILLKHQLKVKRTKCSFAQQELAYLGHIIQPNGVSTDPEKIQVIQHWPAPTS 905
Query: 852 VKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNS-FQWTEEATQAFVKLKEVMTTVPV 910
VK LR FLGL+GYYR+FV+NY L++PL LL+K + WT E AF LK+ + T V
Sbjct: 906 VKELRSFLGLSGYYRKFVRNYGILSKPLTNLLRKGQLYIWTAETEDAFQALKQALITALV 965
Query: 911 LVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAV 970
L P+F PF++ETDAS KG+GAVLMQ P+A++S+ L R S YE+E +A++LAV
Sbjct: 966 LAMPDFQTPFVVETDASDKGIGAVLMQNNHPLAFLSRALGLRHPGLSTYEKESLAIMLAV 1025
Query: 971 QKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAAD 1030
WR YL +F I TD RSL FL +QR+ Q K ++KL+G ++I +K GI+N AAD
Sbjct: 1026 DHWRPYLQHDEFFIRTDHRSLAFLTEQRLTTPWQHKALTKLLGLRYKIIFKKGIDNSAAD 1085
Query: 1031 ALSR-----KLQFSAISSVQCAEWA-DLEAEILGDERYRKVLQELATQGNSAIGYQLKRG 1084
ALSR +++ SA+S V EW D+ A D +Q L + + L+ G
Sbjct: 1086 ALSRYPGSDRVELSALS-VAVPEWINDIVAGYSSDPDACSKVQTLCINSGAVPNFSLRNG 1144
Query: 1085 RLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQ 1144
L +++R+ + +L H A+GGH+GI TY+R+ LF W ++ + YVQ
Sbjct: 1145 VLYFQNRLWVGHNVDVQQRILANLHTAAVGGHSGIQVTYQRVKQLFAWPRLRATVVQYVQ 1204
Query: 1145 KCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYA 1204
C VCQ+ K E + G LQPLP+P W +S+DF+ GLPK+ + ILVVVD+F+KY+
Sbjct: 1205 ACSVCQQAKSEHVKYPGMLQPLPVPDHAWQIVSLDFVEGLPKSASFNCILVVVDKFSKYS 1264
Query: 1205 HFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSS 1264
HF+ L+HP++A ++AE +++ + +LHG P S++SDRDR+F ST W+ +F+LAGT+L+ SS
Sbjct: 1265 HFVPLTHPFSALDVAEAYMQHIHRLHGLPQSLISDRDRIFTSTLWTTLFRLAGTQLRMSS 1324
Query: 1265 AYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALY 1324
+YHPQTDGQTE VN+C+ET+LRC + P QW +WL+ AE+WYNT++HSA+ TTPF+ LY
Sbjct: 1325 SYHPQTDGQTERVNQCLETFLRCFVHACPSQWSRWLALAEYWYNTSFHSALGTTPFEVLY 1384
Query: 1325 GRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEV 1384
G + + D++ +W ER + ++ +L +AQ RM+QQA++HR + + V
Sbjct: 1385 GHKPRYFGLSASAACRSDDLVEWLHEREKMQALIRDHLLRAQTRMKQQADQHRSERSFAV 1444
Query: 1385 GDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHIS 1444
GD VYLK+QP+ +S+ R+N+KLS R+YGP+ ++ K+ AY+L LP S +HPV H+S
Sbjct: 1445 GDWVYLKLQPFVQQSVVTRANRKLSFRFYGPFQVLDKVGTVAYRLDLPSSSLIHPVVHVS 1504
Query: 1445 LLKKAVNAGVQ-SQPLPAALTEEWELKVEPEAIMDTRENRDGDL---EVLIRWKDLPTFE 1500
LKKA+ Q PLP L V P I+D R R G ++ +RW
Sbjct: 1505 QLKKALAPTEQVHSPLP-VLDPTNATHVCPAQILDRRFIRKGSKLVEQIQVRWTGDAPAA 1563
Query: 1501 DSWEDFSKLLDQFPNHQLEDKLSLQGGRDV 1530
+WE+ +L +FP + QGG +V
Sbjct: 1564 TTWENPQELRRRFPTAPAWGQAGTQGGGNV 1593
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 998 bits (2580), Expect = 0.0
Identities = 566/1459 (38%), Positives = 817/1459 (55%), Gaps = 115/1459 (7%)
Query: 107 RVDIPMFNG-NDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWF-QWWEEQTLE 164
R D P ++G +D ++ + E FF R+ + EK+ M + + A W+ Q E++
Sbjct: 68 RPDFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQEDERGT 127
Query: 165 RAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGV 224
W FK+ L R+ P L P L S ++ G+V +Y++ F+ L D E +
Sbjct: 128 PTWTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQRVQL 187
Query: 225 FLNGLQEEIKAEMKLYPADDLAELMDRALLLE--EKNTAMRGGKPKEEDKRGWKEKGGVG 282
F GL + ++++ LA M A E E+ TA+ P
Sbjct: 188 FTGGLLPPLSLQVQMQNPQSLAAAMSLARQFELIEQYTAVPAKAP--------------- 232
Query: 283 GRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGG 342
GR G + + G K +P ++ N
Sbjct: 233 GR-----GVLPAPAPRPQLALPAPAGAA-----------KPAPPAATAADNRPVRRLNQA 276
Query: 343 QRLTQTELQERSRKGLCFKCGDKWGKEH--ICSMKNYQLILMEVEEDEEEEEIFEEAEDG 400
++ +ER R GLCF C +K+ + H +C +L ++ EDE+ EEA +
Sbjct: 277 EQ------EERRRLGLCFNCDEKYSRGHNKVCK----RLFFVDSVEDED-----EEAPED 321
Query: 401 EFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIP 460
E E V SL++ G+ ++ ++G ++ L+D G+T NFI + +
Sbjct: 322 EVDAEAPV--FSLHAVAGVAVGHPILLRVQLGATTLVALVDTGSTHNFIGESAAARTGLS 379
Query: 461 VIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLG 520
V V NG K GV ++ + ++G+P +++ L G ++VLG W+A LG
Sbjct: 380 VQPRPRMTATVANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLG 439
Query: 521 NIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEE 580
+ + + + +G+ + QG P+ + +++ ++
Sbjct: 440 RMSWDVTTRALTFDLEGRTICWQGAPN-----QDGPAVRAASADDSL------------- 481
Query: 581 KTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNE 640
+ +L+ + +VF EP GLPP+R DHAI L++G S +RPYRYP K+E
Sbjct: 482 ---------LGGLLDSFADVFTEPTGLPPQRGRDHAIVLKQGTSPVAVRPYRYPAAHKDE 532
Query: 641 IEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDE 700
+E+ M++ GI+R S S FSSP +LVKK D WRFCVDYRA+N T+ D FPIP++DE
Sbjct: 533 LERQCAAMISQGIVRRSDSAFSSPVLLVKKADSSWRFCVDYRALNALTVKDAFPIPVVDE 592
Query: 701 LLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQA 760
LLDE+ A FSKLDL+SGYHQ+RM+ EDI KTAFRTH+G YE+LV+PFGL NAP+TFQA
Sbjct: 593 LLDELHGARFFSKLDLRSGYHQVRMRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPATFQA 652
Query: 761 LMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPE 820
LMN VLR +LR+FVLVFF DILIYS H HLR VL VL+E+ L + KC+FG
Sbjct: 653 LMNDVLRSFLRRFVLVFFDDILIYSDTWADHLRHLRAVLTVLREHKLFIKRSKCAFGVDS 712
Query: 821 IIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLN 880
+ YLGHVIS AGVA DP+K++ + +WP P+ + +RGFLGL GYYR+FV NY +A PL
Sbjct: 713 VAYLGHVISAAGVAMDPAKVQAIREWPQPRSARAVRGFLGLAGYYRKFVHNYGTIAAPLT 772
Query: 881 QLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGR 940
LLKK F WTE AT AF LK +++ P+L P+F K F +E DAS G GAVL+Q+G
Sbjct: 773 ALLKKEGFAWTEAATAAFDALKAAVSSAPILAMPDFTKAFTVECDASSHGFGAVLIQDGH 832
Query: 941 PVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIM 1000
P+A+ S+ ++ R +A + YEREL+ +VLAV+ WR YL G F + TD SL++L DQR+
Sbjct: 833 PLAFFSRPVAPRHRALAAYERELIGLVLAVRHWRPYLWGRHFTVKTDHYSLKYLLDQRLS 892
Query: 1001 GEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK-------------LQFSAISSVQCA 1047
Q W+ KL+G+DF ++YKPG N ADALSR+ +F I ++ A
Sbjct: 893 TIPQHHWVGKLLGFDFTVEYKPGAANTVADALSRRDTTEDASVLVLSAPRFDFIERLRQA 952
Query: 1048 EWADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKE 1107
+ D++ ++ LQ G A + + G +L+ R+ LP S + VL+
Sbjct: 953 Q--DVDPALV-------ALQAEIRSGTRAGPWSMADGMVLFAGRLYLPPASPLLQEVLRA 1003
Query: 1108 FHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLP 1167
H+ GH G+ RT R+ F++ MK +Q++V+ CEVCQR K E L PAG L PLP
Sbjct: 1004 VHEE---GHEGVQRTLHRLRRDFHFPNMKSVVQDFVRTCEVCQRYKAEHLQPAGLLLPLP 1060
Query: 1168 IPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVV 1227
+P WTD+++DF+ LP+ GK IL VVDRF+KY HFI L+HPY+A+ +A+VF E+V
Sbjct: 1061 VPQGVWTDVALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQVFFAEIV 1120
Query: 1228 KLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRC 1287
+LHG P S+VSDRD VF S FWSE+ +L GTKL ++A+HPQ+DGQ+E NR + YLRC
Sbjct: 1121 RLHGVPQSMVSDRDPVFTSAFWSELMRLVGTKLHMTTAFHPQSDGQSEAANRVIIMYLRC 1180
Query: 1288 VTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKW 1347
+TG +P+QW +WL WAEF +NT Y ++++ TPF+ +YGR+ P I T V V K
Sbjct: 1181 LTGDRPRQWLRWLPWAEFVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKS 1240
Query: 1348 TAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQK 1407
ER+ LE+++ LE+AQ ++ +K R V ++VGD V L+++ SL+ + K
Sbjct: 1241 MEERSEFLEDIRYRLEQAQAIQKKYYDKSHRAVSFQVGDWVLLRLRQRAPASLSLAVSGK 1300
Query: 1408 LSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEW 1467
L PRY+GPY I IN A +L LP G+++H VFHI LLKK A + P P
Sbjct: 1301 LKPRYFGPYRIAEMINEVAARLALPAGARLHDVFHIGLLKKWHGAPPDAPP-PLPNVHHG 1359
Query: 1468 ELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGG 1527
+ EPE ++ R R G +VL++WK +WED ++P QLED+L L GG
Sbjct: 1360 AVACEPERVIKARLAR-GVRQVLVQWKGTSAASATWEDREPFFARYPALQLEDELPLDGG 1418
Query: 1528 RDVANPSSRPRFGNVYARR 1546
DV +G Y RR
Sbjct: 1419 GDV-------MWGRTYVRR 1430
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 992 bits (2565), Expect = 0.0
Identities = 576/1549 (37%), Positives = 865/1549 (55%), Gaps = 88/1549 (5%)
Query: 8 MESRVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRHRRSSREHNSVSTA 67
+ +++D L +T+++ A E E++R L L+ +R R+ T N
Sbjct: 21 LAAKLDKLPDRVTQVQASAFEYSEQVRALNLAVERVEASQRAATT---------NPSGLV 71
Query: 68 RTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGN-DAYGWVTKVE 126
T + + SR +H + + + +++ P ++G D W+ + E
Sbjct: 72 SRQPRDNTPPQDDADARSRRDQHGDDTAIDNSF--LPRAKLEFPTYDGKGDPLPWLNRCE 129
Query: 127 RFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPALLQNP 186
F R + E K+ + + A W+ E + E +W F Q + RF P + +P
Sbjct: 130 TF-RGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEPSWRRFVQLVHTRFGPPMTDSP 188
Query: 187 FGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYPADDLA 246
G L ++++ G+V Y +F LA +F GL +K ++ L L
Sbjct: 189 LGELTALRRTGTVENYVNSFLALACRDVELSESQQVQLFTAGLVNPLKTDVALCRPRSL- 247
Query: 247 ELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMGRIANSYVNFQSK 306
D A++L R ++++ +G + GR+ + S
Sbjct: 248 ---DDAIMLA----------------RAYEQRATLGPT--DPSAPRTGRVPRPSLPASSA 286
Query: 307 GGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERSRKGLCFKCGDKW 366
+ GKQP +RL+ E+ +R +GLC+ C +K+
Sbjct: 287 ASAS-------ASTTSADVAASTAAGKQPLVSALPRKRLSPAEMAQRRSEGLCYNCDEKY 339
Query: 367 GKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLSLNSKEGLTSNR--S 424
H C K++ + ++ ED +EE + E + L++ G+++ + +
Sbjct: 340 VAGHRCK-KSFVIEVISFPEDTGDEEDSTPEAHAITLDEPSIF---LHALAGISAPKFNT 395
Query: 425 FKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCK 484
KV ++G++E++ L+D G+T NFI+ + + +P+ V V NG + + G C
Sbjct: 396 IKVWARLGSQELVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRVPSPGRCP 455
Query: 485 NLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQELIIQWVSQGQKMVLQG 544
++ + F+ L LGG ++VLG WL +LG +F + L
Sbjct: 456 PQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFS-----------RQSLAF 504
Query: 545 EPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEP 604
P+ +V W SI + A + + Q + T+ +L+ ++F EP
Sbjct: 505 GPAHDRVT--WTSI---DAAPAPALAAAIDGQPGDLMTD---------LLDVLKDLFTEP 550
Query: 605 KGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSP 664
GLPP R H I+L+ G S +RPYRY QK+E+E+ +ML G+IR S+S FSSP
Sbjct: 551 HGLPPERHLCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHGVIRPSSSAFSSP 610
Query: 665 AILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIR 724
A+L+KK DG WRFCVDYRA+N TI DKFPIP+ +EL DE+ A F+KLD++SGYHQ+
Sbjct: 611 ALLIKKCDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFTKLDMRSGYHQVL 670
Query: 725 MKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIY 784
M +D+ KTAFRTH+G +E+LV+PFGLTNAP+TFQALMN VL P+LR+FVLVFF DILIY
Sbjct: 671 MHPDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRRFVLVFFDDILIY 730
Query: 785 SKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDML 844
S + H H+R VLQ L+++ L + KC FG + YLGHVIS GVA D SK++ +L
Sbjct: 731 SSSWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDGVAMDRSKVQAVL 790
Query: 845 DWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEV 904
DWP+PK V+ +RGFLGL GYYRRF++++ +A PL LL+K F+W++EA AF KL+
Sbjct: 791 DWPVPKTVRAVRGFLGLAGYYRRFIRDFGAIAAPLTALLRKEGFRWSDEAAAAFRKLQHA 850
Query: 905 MTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELM 964
+T PVL P+F++ FI+E DASG GLGAVL Q G PVA+ S ++ R + YEREL+
Sbjct: 851 LTAAPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRHAKLAAYERELI 910
Query: 965 AVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGI 1024
+V AV+ WR YL G +F+I TD SLRFL DQR+ Q W SKL+G+DF ++YKPG
Sbjct: 911 GLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLGFDFAVEYKPGT 970
Query: 1025 ENKAADALSRKLQFSAISSVQCAEWADLEAEILGDERYRKVLQEL---ATQGNSAIGYQL 1081
N ADALSR+ + A + V A L ++ + L L +G +
Sbjct: 971 ANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDIIRGAKPPPWAF 1030
Query: 1082 KRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQN 1141
K G ++ KDR+ +P+ S + VL+ H GH G +T R+ A F+ ++ +Q+
Sbjct: 1031 KDGLIVLKDRVFIPESSPLLPAVLELAHG---HGHEGTQKTMFRLRADFHVPRDRVLVQD 1087
Query: 1142 YVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFT 1201
+V+ C CQRNK E L PAG LQ LP+PS W DI+MDF+ GLP+ GK IL VVDRF+
Sbjct: 1088 FVRACLTCQRNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVHGKTVILTVVDRFS 1147
Query: 1202 KYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLK 1261
K+AHFI LSHPY A +A F ++V+LHG P+SIVSDRD VF S FW+E+F+LAG +L
Sbjct: 1148 KFAHFIPLSHPYTATTVAAAFFGDIVRLHGVPSSIVSDRDPVFTSKFWTELFRLAGVQLN 1207
Query: 1262 FSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFK 1321
+SA+HPQ+DGQ+EV N+ + YLRC+TG +P+QW +WL WAE+ YNT+Y ++++TTPF
Sbjct: 1208 LTSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRQWLRWLPWAEYCYNTSYQASLRTTPFH 1267
Query: 1322 ALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQ 1381
+YGR P + T + V++ +R+ L ++ LE+AQ +Q +K R++
Sbjct: 1268 VVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQVYKQAYDKKHRELN 1327
Query: 1382 YEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVF 1441
++VGD V+L++ + SL R KL P++YGPY I+A I AY+L+LP G+++H VF
Sbjct: 1328 FDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYRLRLPPGARLHDVF 1387
Query: 1442 HISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFED 1501
H+ LLK + P P T+ ++ +EP+++ +R R G +VL++WK+ P +
Sbjct: 1388 HVGLLKPFRGEPPSTLP-PLPPTQHGQVCLEPQSVSRSRLAR-GVRQVLVQWKNKPAADA 1445
Query: 1502 SWEDFSKLLDQFPNHQLEDKLSLQGGRDVANPSSRPRFGNVYARRPKPQ 1550
SW + +P+ QLED+L L+GGRDV +G Y RR K Q
Sbjct: 1446 SWLSLDEFRALYPDFQLEDELLLEGGRDV-------MWGMHYVRRRKDQ 1487
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 985 bits (2546), Expect = 0.0
Identities = 566/1499 (37%), Positives = 828/1499 (54%), Gaps = 108/1499 (7%)
Query: 63 SVSTARTYDGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGN-DAYGW 121
++S ART + + T S +G+ R +H R + P ++G D +
Sbjct: 39 ALSVARTTEKASTES-SGTPAPDRPPKHW---------------RPEFPKYDGKTDPLAF 82
Query: 122 VTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFRRFQPA 181
+ + E FF V AE+ M ++D A W+ ++ WE FK+ L R+ P
Sbjct: 83 INRCESFFIQQHVIPAERTWMASYNLQDGAQLWYMHVQDNEGTPTWERFKELLNLRYGPP 142
Query: 182 LLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVFLNGLQEEIKAEMKLYP 241
L P L + ++ +V +Y++ F+ L + +F GL + +++
Sbjct: 143 LRSVPLFELSACRRTSTVEDYQDRFQALLPRAGRLEEAQQVQLFTGGLLPPLSLQVQQQK 202
Query: 242 ADDLAELMDRALLLE-------EKNTAMRGGKPKEEDKRGWKEKGGVGGRYYSSTGDSMG 294
L E M A E T+ RG P + STG +
Sbjct: 203 PASLEEAMSLARQFELMEPYLFPATTSARGVLPTPAPR--------------PSTGPVV- 247
Query: 295 RIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRLTQTELQERS 354
K EG+ P K RL+Q + +ER
Sbjct: 248 ---------------------------KPAPATVTVEGR-PVK------RLSQAQQEERR 273
Query: 355 RKGLCFKCGDKWGKEH--ICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLEGKVLQLS 412
R GLC+ C +K+ + H +C +L +E EE ++ E+ + E +E V S
Sbjct: 274 RLGLCYNCDEKYSRSHNKVCK----RLFFVEGGAIEEGDDTVEDDTE-EATVEAPVF--S 326
Query: 413 LNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYVVEVG 472
L++ G+ + ++ +G ++ L+D G+T NFI +D + +PV V
Sbjct: 327 LHAVAGIPLGKPILLQVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVA 386
Query: 473 NGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEA-NFQELII 531
NG K GV + + +QG+ +++ L G ++VLG W+A LG A + +
Sbjct: 387 NGEKVSCPGVLRRAPITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTV 446
Query: 532 QWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEVPEGMR 591
+ QG+ + Q P + + S T A G S TE + +G+
Sbjct: 447 SFQHQGRTVSWQSLPPHQRADVHAVSTG-TSLVAATGSSSS----TPAPTTEPALLDGL- 500
Query: 592 KILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNS 651
L + +VF EP+GLPP R DHAI L GA +RPYRYP K+E+E+ M+
Sbjct: 501 --LGSFDDVFAEPRGLPPPRGRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQ 558
Query: 652 GIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVF 711
G+IR STS FSSP +LVKK DG WRFCVDYRA+N TI D +PIP++DELLDE+ A F
Sbjct: 559 GLIRRSTSAFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFF 618
Query: 712 SKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLR 771
+KLDL+SGYHQ+RM+ ED+ KTAFRTH+G YE+LV+PFGL NAP+TFQALMN +LR YLR
Sbjct: 619 TKLDLRSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLR 678
Query: 772 KFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQA 831
+FVLVFF DILIYS H H+R VL +L+++ L + KC+FG I YLGH+I
Sbjct: 679 RFVLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGAT 738
Query: 832 GVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWT 891
GV+ DP+K++ ++DWP P+ + +RGFLGL GYYR+FV +Y +A PL L KK F+W+
Sbjct: 739 GVSMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWS 798
Query: 892 EEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSD 951
+E AF LK +TT PVL P+F KPF++E DAS G GAVL+Q+ P+A+ S+ ++
Sbjct: 799 DEVATAFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFSRPVAP 858
Query: 952 RAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKL 1011
R +A + YEREL+ +VLA++ WR YL G FV+ TD SL++L DQR+ Q W+ KL
Sbjct: 859 RHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHHWVGKL 918
Query: 1012 MGYDFEIKYKPGIENKAADALSRK-LQFSAISSVQCAEWADLE--AEILGDERYRKVLQE 1068
+G+DF ++YK G N ADALSR+ A+ ++ + +E E +++
Sbjct: 919 LGFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYIERLRAAQTTEPALVAIRD 978
Query: 1069 LATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISA 1128
G + + L+ G +++ R+ +P S + +L H GH G+ RT R+
Sbjct: 979 AIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIH---TDGHEGVQRTLHRLRR 1035
Query: 1129 LFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAM 1188
F+ M+ +Q +V+ C+ CQRNK E L+P G L PLP+P+ W DI +DF+ LP+
Sbjct: 1036 DFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWADIGLDFVEALPRVG 1095
Query: 1189 GKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTF 1248
GK IL VVDRF+KY HFI L+HPY A+ +A+ F ++V+LHG P S+VSDRD VF S+F
Sbjct: 1096 GKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQSMVSDRDPVFTSSF 1155
Query: 1249 WSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYN 1308
W E+ +L GTK+ ++A HPQ+DGQTE N+ + YLRC TG +P+QW +WL WAE+ YN
Sbjct: 1156 WRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQWVRWLPWAEYIYN 1215
Query: 1309 TNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNR 1368
T Y ++++ TPF+ +YGR+ P+I T V V + A+R+ L +++ LE+AQ
Sbjct: 1216 TAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFLADVRYRLEQAQAT 1275
Query: 1369 MRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYK 1428
++ +K R V YEVGDLV L+++ SL + S KL PRY+GPY ++ INP A +
Sbjct: 1276 HKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYFGPYRVVEVINPVAVR 1335
Query: 1429 LQLPEGSQVHPVFHISLLKKAVNAGVQSQP-LPAALTEEWELKVEPEAIMDTRENRDGDL 1487
L+LP +++H VFH+ LLKK V A S P LPA + EPE + +R R G
Sbjct: 1336 LELPPRAKLHDVFHVGLLKKFVGAAPPSPPALPA--VHHGAIDPEPERVTRSRLAR-GVR 1392
Query: 1488 EVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDVANPSSRPRFGNVYARR 1546
+VL+ WK +WED +++P QLED+L+L+ GRDV +G YARR
Sbjct: 1393 QVLVHWKGESAASATWEDLDTFKERYPAFQLEDELALEEGRDV-------MWGRTYARR 1444
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 980 bits (2534), Expect = 0.0
Identities = 560/1426 (39%), Positives = 802/1426 (55%), Gaps = 66/1426 (4%)
Query: 111 PMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPF 170
P FNG++ W + E +F + + +++ + A W Q Q W
Sbjct: 151 PQFNGDNPQLWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATWFEL 210
Query: 171 KQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMR----NADREVLKGVFL 226
+ RF Q + + Q SV +Y + F+ + + + D F+
Sbjct: 211 CDRVCGRFARDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFVTKFV 270
Query: 227 NGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRG-GKPKEEDKRGWKEKGGVGGRY 285
+GL++ I+ + + DL ALL EE ++ K E K K
Sbjct: 271 DGLKDHIRVVVMVQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKPS----- 325
Query: 286 YSSTGDSMGRIANSYVNFQSKGG---TGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGG 342
++ T + + + N + K G + +D++ +L++
Sbjct: 326 HNLTSPTFQARSIPFTNIEDKRGVEFSKGRDDKVSALRSY-------------------- 365
Query: 343 QRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILME-----VEEDEEEEEIFEEA 397
R KGLCF CG+KWG++H C+ QL ++E ++ D EE E A
Sbjct: 366 ----------RRSKGLCFVCGEKWGRDHKCAT-TVQLHVVEELINALKTDPEENCNSEGA 414
Query: 398 EDGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVEL 457
+ E E ++ +S + G S++S +++G + N E+L+L+D G+T +FI L +L
Sbjct: 415 PESE---EDSLMAISFQALNGTDSSKSIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQL 471
Query: 458 EIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLA 517
V+V +G++ N QG F +L LG + +LGMDWL
Sbjct: 472 CGLQKLNQAIKVQVADGSQLFCDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLE 531
Query: 518 SLGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQK 577
++ ++ I + GQ + LQG + ++ +
Sbjct: 532 QFSPMQVDWVHKWIAFQHHGQAVQLQGIHPQLSTCFPISNDQLQGMSKKGAVMCLVHLNV 591
Query: 578 EEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQ 637
E T VPE ++ IL E+ E+F EP LPP+R DH I L EGA N+RPYRY
Sbjct: 592 AETLTATTVPEIVQPILNEFQEIFSEPTELPPKRNCDHHIPLVEGAKPVNLRPYRYKPAL 651
Query: 638 KNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPI 697
K+EIE+ V EML SG+I+ S+SPFSSPA+LVKKKDG WR C+DYR +N T+ K+P+P+
Sbjct: 652 KDEIERQVAEMLRSGVIQPSSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPV 711
Query: 698 IDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPST 757
IDELLDE+ + FSKLDL++GYHQIRM E D KTAF+TH GHYEY V+ FGLT AP+T
Sbjct: 712 IDELLDELAGSKWFSKLDLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPAT 771
Query: 758 FQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFG 817
F + MN+ L P LRKF LVFF DILIYS ELH H+R VLQ+L + KCSF
Sbjct: 772 FLSAMNETLSPVLRKFALVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFA 831
Query: 818 QPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQ 877
Q EI YLGHVI AGVA DP+KI+D++ WP P +K LRGFLGL GYYR+FV+++ +++
Sbjct: 832 QQEISYLGHVIGAAGVATDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLISK 891
Query: 878 PLNQLLKKN-SFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLM 936
PL QLLKK F+WT E AF +LK+ + PVL P+F K F +ETDAS G+GAVL
Sbjct: 892 PLTQLLKKGIPFKWTPEIESAFQQLKQALVAAPVLALPDFSKHFTIETDASDVGIGAVLS 951
Query: 937 QEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLAD 996
QE P+AY+S+ L + + S YE+E MA++LAV+ WR YL +F+I TD SL L +
Sbjct: 952 QEKHPIAYLSRALGPKTRGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTE 1011
Query: 997 QRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK----LQFSAISSVQCAEWADL 1052
QR+ QQK +KL+G ++I Y+ G+ N AADALSR+ + +AIS + +L
Sbjct: 1012 QRLHTPWQQKAFTKLLGLQYKICYRKGVSNAAADALSRRESPISEVAAISECIPSWMQEL 1071
Query: 1053 EAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTA 1112
D + +++L ELA NS YQL +G L YK +I + + ++ E H T
Sbjct: 1072 MQGYQLDGQSKQLLAELAISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLVNELHATP 1131
Query: 1113 LGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQG 1172
LGGH+G TY+++ +LF W GMK I+ +Q C+VC + K + G LQPLP+P+
Sbjct: 1132 LGGHSGFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGA 1191
Query: 1173 WTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGF 1232
W IS+DFI GLP++ + ILVVVD+F+KY+HFI LSHP+NA +A+ F+K + KLHG
Sbjct: 1192 WQTISLDFIEGLPRSSHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHGL 1251
Query: 1233 PTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSK 1292
P +I+SDRD++F S FW ++F GT L SSAYHPQ+DGQTE VN+C+E YLRC +
Sbjct: 1252 PRAIISDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLRCFVHAA 1311
Query: 1293 PKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERN 1352
P +W WL AEFWYNT++HS + TPF+ LYG G D + ++ +W ER
Sbjct: 1312 PHKWSSWLYLAEFWYNTSFHSTLNKTPFEVLYGYTPSHFGIGLDD-CQIADLHEWHTERK 1370
Query: 1353 LILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRY 1412
+ + L+ +L +AQ +M+ QA+K R Q+ VGD VYLK+QPY +A+R+ KL+ RY
Sbjct: 1371 FMQQLLQQHLNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRY 1430
Query: 1413 YGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQ-PLPAALTEEWELKV 1471
YGP+ +++++ AY +QLP S +HPVFH+S LK AV + Q LP +L L+V
Sbjct: 1431 YGPFQVMSRVGTVAYHIQLPATSSIHPVFHVSQLKAAVGFSKKVQDELPTSL---GALQV 1487
Query: 1472 EPEAIMDTRENRDGD---LEVLIRWKDLPTFEDSWEDFSKLLDQFP 1514
P +D R + G+ L++L W E +WED L +FP
Sbjct: 1488 -PFQFLDKRLVKKGNRSVLQLLTHWYHSSPSESTWEDMEDLFARFP 1532
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 974 bits (2517), Expect = 0.0
Identities = 558/1457 (38%), Positives = 804/1457 (54%), Gaps = 114/1457 (7%)
Query: 107 RVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLER 165
++D P ++G+ D W+ + E+FFR R ++ + ++ A W+ E+
Sbjct: 472 KIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYHLKGAAQTWYYALEQDEGMP 531
Query: 166 AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGVF 225
W FK+ RF P + L + +V +Y + F + R D + +F
Sbjct: 532 TWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRFNAMLGHTRKLDAQQKAELF 591
Query: 226 LNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGRY 285
+ GL + I+A++ + DL M A E++ A P RG++
Sbjct: 592 VGGLPDHIRADVAIRDPQDLQSAMYLARAFEQRAAAQTTPPPA----RGFR--------- 638
Query: 286 YSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQRL 345
QS+ G + L Q P + + +RL
Sbjct: 639 ------------------QSRPGLPAPP---RPLTAPPTAAAQPAGTAAPARPF---RRL 674
Query: 346 TQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAEDGEFVLE 405
T E QER R+GLCF C + + + H+C +L +E +D ++E EE D + LE
Sbjct: 675 TPAEQQERRRQGLCFNCDEPYVRGHVCP----RLFYLE-NDDYIDDEPQEEGADLQIALE 729
Query: 406 GK--------VLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVEL 457
+ + +SL++ G+ + + + I ++ L+D G+T NF+S L+ L
Sbjct: 730 QEPPSRAAAIIPTVSLHALAGVRTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMSRL 789
Query: 458 EIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLA 517
++P V+V NG G+ +++ L V L LG +V+LG ++L
Sbjct: 790 QLPSTPHPTIKVQVANGDNIPCQGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEFLR 849
Query: 518 SLGNIEANFQELIIQWVSQGQKMVLQG---------EPSVCKVAANWKSIKITEQQEAEG 568
LG I + L + + G+ ++ G +P+ C V++ T Q
Sbjct: 850 LLGPILWDCDRLSMSFTKGGRHIIWSGLGAPGAVPPQPAACVVSS-------TPTQPL-- 900
Query: 569 YYLSYEYQKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNI 628
+ +L ++ VF EP+GLPP R DH I L GA+ +
Sbjct: 901 ---------------------LDDLLRQFELVFAEPQGLPPARPYDHRIHLLPGAAPVAV 939
Query: 629 RPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKAT 688
RPYRYP QK+E+E+ ML GIIR STSPFS+P +LV+K D WRFC+DYRA+N T
Sbjct: 940 RPYRYPQLQKDELERQCSAMLAQGIIRPSTSPFSAPVLLVRKPDNSWRFCIDYRALNAKT 999
Query: 689 IPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLP 748
DKFPIP++DELLDE+ A F+KLDL+SGYHQ+RM D+ KTAFRTHEGHYE+LV+P
Sbjct: 1000 SKDKFPIPVVDELLDELHGAHFFTKLDLRSGYHQVRMHPADVEKTAFRTHEGHYEFLVMP 1059
Query: 749 FGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLV 808
FGL+NAP+TFQALMN VLRPYLRK+VLVFF DILIYSK H H+ IVL L+++ L
Sbjct: 1060 FGLSNAPATFQALMNDVLRPYLRKYVLVFFDDILIYSKTWAEHLQHISIVLHALRDHQLH 1119
Query: 809 ANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRF 868
+ KCSFG + YLGHVIS AGVA D +K++ + WP P +GLRGFLGL GYYR+F
Sbjct: 1120 LKRSKCSFGARSVAYLGHVISAAGVAMDAAKVEAVSSWPAPHSARGLRGFLGLAGYYRKF 1179
Query: 869 VKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASG 928
++++ +A PL +LL++++F W ++ AF +LK +TT PVL PNF+K F+++ DASG
Sbjct: 1180 IRDFGVIAAPLTRLLRRDAFTWDDDTQAAFQQLKTALTTGPVLQMPNFEKTFVVDCDASG 1239
Query: 929 KGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQ 988
G GAVL Q PVA+ S+ R + YEREL+ +V AV+ WR YL G F + TD
Sbjct: 1240 TGFGAVLHQGAGPVAFFSRPFVTRHLKLAAYERELIGLVQAVRHWRPYLWGRHFAVRTDH 1299
Query: 989 RSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK----LQFS----- 1039
SL++L DQR+ Q +W+SKL G+DFE++Y+PG N AADALSR+ LQ S
Sbjct: 1300 YSLKYLLDQRLSTVPQHQWLSKLFGFDFEVEYRPGRLNVAADALSRRDAELLQPSAGELG 1359
Query: 1040 -----AISSVQCAEWADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVL 1094
A+S A D+ ++ Q+L G ++L+ G LL+ RI +
Sbjct: 1360 AAAALALSGPSFAFLDDIRRATATSPDSSRLCQQL-QDGTLTAPWRLEDGLLLHGSRIYV 1418
Query: 1095 PK-GSTKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNK 1153
P G + +L GH GI +T R+ A FY G + + ++V+ C CQRNK
Sbjct: 1419 PNHGDLRHQAILLAHS----AGHEGIQKTLHRLRAEFYVPGDRTLVADWVRTCTTCQRNK 1474
Query: 1154 YEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPY 1213
E L PAG LQPL +PSQ W DISMDFI GLPK GK IL VVDRF+KYAHFI L HPY
Sbjct: 1475 TETLQPAGLLQPLQVPSQVWADISMDFIEGLPKVGGKSVILTVVDRFSKYAHFIPLGHPY 1534
Query: 1214 NAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQ 1273
A +A F +V+LHGFP+SIVSDRD VF W ++FK AG L+ S+A+HPQTDGQ
Sbjct: 1535 TAASVARAFFDGIVRLHGFPSSIVSDRDPVFTGHVWRDLFKCAGVSLRMSTAFHPQTDGQ 1594
Query: 1274 TEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFK 1333
+EVVN+ + YLRCVTG +P+ W WLSWAE+ YNT++H+A++ TPF+ +YGR P I
Sbjct: 1595 SEVVNKVIAMYLRCVTGDRPRAWVDWLSWAEYCYNTSFHTALRATPFEVVYGRPPPPILP 1654
Query: 1334 GNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQ 1393
E+ +R+ IL E++ L +AQ ++ + RD++ GD V+L++
Sbjct: 1655 YQAGSARTAAAEELLRDRDNILAEVRQRLVQAQQLSKRYYDAGHRDMELADGDWVWLRLL 1714
Query: 1394 PYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAG 1453
++SL R+ KL PRY GP+ ++ +I AY+L+LPEG+++H VFH+ LLK+
Sbjct: 1715 HRPVQSLEPRAKGKLGPRYAGPFRVLERIGKVAYRLELPEGARLHDVFHVGLLKRHKGEP 1774
Query: 1454 VQSQP-LPAALTEEWELKVEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQ 1512
+ + LP + L P ++ ++ R G +L++W+ L E +WE
Sbjct: 1775 PEQRAGLPP--VQNGRLLPAPLKVLRAQQRR-GTWHILVQWQGLSPEEATWEPLDDFRGL 1831
Query: 1513 FPNHQLEDKLSLQGGRD 1529
+P+ QLED+L GRD
Sbjct: 1832 YPDFQLEDELFAHAGRD 1848
>gb|AAX95226.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1513
Score = 966 bits (2497), Expect = 0.0
Identities = 500/1180 (42%), Positives = 738/1180 (62%), Gaps = 59/1180 (5%)
Query: 361 KCGDKWGKEHICSMKN-YQLILMEVEEDEEEEEIFEEAEDGEFVLEG-----------KV 408
K + W H C +K +L+E EE E EE+ E + E VLE ++
Sbjct: 363 KHDEAWFPGHQCKVKKALNALLLEEEEYEGTEEVGREKKAQEKVLEETEHAPEEIDQEEL 422
Query: 409 LQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIATSEYV 468
+ +S N+ +G T +F V +I R + L+D G+ F+ Q+ + + P+++T
Sbjct: 423 MYVSQNAMQGATRPDTFSVIIQINGRRAVGLVDSGSPSTFMDQEYAIRNDCPLVSTDSKK 482
Query: 469 VEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIEANFQE 528
V V G + ++ ++ ++QG F ++ L G +++LG DW+ I + ++
Sbjct: 483 VVVAGGGELKSEVQVPDILYQIQGETFSNKFNLIPLKGYDIILGADWIYKYSPITLDLKK 542
Query: 529 LIIQWVSQGQKMV-LQGEPSVCK-VAANWKSIKITEQQEAEGYYLSYEYQKEEEKTEAEV 586
+ +++G+K++ LQ + K + + + ++ GY EE E +
Sbjct: 543 RELG-ITKGEKVITLQDFTNTGKHLLVDSSKVDKIIRKGGLGYLFQITQVAEESDVEESI 601
Query: 587 --PEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKL 644
P+ ++ IL+ +P V ++PKGLPP+R DH I L++GA PN+RPYR P +QK +EK+
Sbjct: 602 SIPDDIQDILQRFPTVLEKPKGLPPQRGCDHVITLKDGAIPPNLRPYRVPHHQKEAMEKI 661
Query: 645 VKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDE 704
+ E++ S I+ S SP+SSPA++V+KKDG WR CVDYR +N T+ +KFP+PII++LLDE
Sbjct: 662 IAELIESKEIQVSNSPYSSPAVMVRKKDGSWRLCVDYRQLNAQTVKNKFPMPIIEDLLDE 721
Query: 705 IGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQ 764
+ A +F+KLDL SGYHQIRM DIPKTAFRTH GHYEY V+PFGLTNAP+TFQ+LMNQ
Sbjct: 722 LNGAKIFTKLDLMSGYHQIRMSRPDIPKTAFRTHLGHYEYQVMPFGLTNAPATFQSLMNQ 781
Query: 765 VLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYL 824
VL P+ RKFVLVFF DILIYSK+ E HK+H+R+VLQVLK NNLV KKC+FG + YL
Sbjct: 782 VLAPFFRKFVLVFFDDILIYSKDREEHKEHIRLVLQVLKANNLVIKPKKCAFGLSSVSYL 841
Query: 825 GHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLK 884
GH+ISQ GVA DP K++ ++ WPIPK V LR FLG+TGYYRRF++ Y + +PL+ +LK
Sbjct: 842 GHIISQNGVATDPGKVEKIVSWPIPKNVTDLRKFLGMTGYYRRFIQGYVLICRPLHDMLK 901
Query: 885 KNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAY 944
K FQW E+ T+AF LK+ M + PVL P+F K F +E DA G G+GAVLMQ RP+A+
Sbjct: 902 KEGFQWGEKQTEAFKFLKQKMCSSPVLTLPDFSKEFTIEADACGTGIGAVLMQGDRPIAF 961
Query: 945 MSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQ 1004
SK+L +A A+S+YE+E MA++ A++KWRHY LGS+ VI TDQ+SL+ + +QR++ Q
Sbjct: 962 YSKSLGPKAAAQSIYEKEAMAILEALKKWRHYFLGSKLVIKTDQQSLKHMMNQRLVEGIQ 1021
Query: 1005 QKWMSKLMGYDFEIKYKPGIENKAADALSR----KLQFSAISSVQCA--EW-ADLEAEIL 1057
K + KLM YD+ I+YK G +N ADALSR +LQ +++ +W D++
Sbjct: 1022 HKLLLKLMEYDYIIEYKAGKDNVVADALSRLPQDQLQTEICNAITVVIPKWIIDVQNSYE 1081
Query: 1058 GDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHA 1117
GD + K+L + T + Y + G L +K RI + + ++ +++++H +A GGH+
Sbjct: 1082 GDVQAHKILSMIGTNSDPDQHYSFENGILRFKGRIYVGEETSIRTNLIRDYHCSAFGGHS 1141
Query: 1118 GIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDIS 1177
G+ T+ RI ALFYW G+K ++ ++++C VCQ K E ++ G L PL + WT I+
Sbjct: 1142 GMRATHHRIKALFYWPGLKKTVEMFIRECPVCQITKVEHIHIPGLLNPLEVLDMAWTHIT 1201
Query: 1178 MDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIV 1237
MDFI GLPK+ KD ILVVVDR TKYAHF+ALSHPY+ +++ E+F+ + +LHG P +I+
Sbjct: 1202 MDFIEGLPKSKWKDAILVVVDRLTKYAHFLALSHPYSVEQVVEIFMNNIHRLHGMPMAII 1261
Query: 1238 SDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWP 1297
DRDR+F S + E+FK +L+FS++YHPQTDGQTE VN+C+E+YLR +T +P QW
Sbjct: 1262 IDRDRIFTSQLFQEIFKSMKVQLRFSTSYHPQTDGQTERVNQCLESYLRNMTFQEPHQWY 1321
Query: 1298 KWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEE 1357
WLS A +WYNT YH++++ TPF+ALYG P I N+ S + + ER+L
Sbjct: 1322 SWLSLAGWWYNTTYHTSLQMTPFQALYGYPPPQI---NEFSISCNVSAEARTERSL---- 1374
Query: 1358 LKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYP 1417
VGD+VY+K+QPY+ + R + KL ++YGP+
Sbjct: 1375 -------------------------NVGDMVYIKLQPYRQTAFGIRGSLKLRSKFYGPFK 1409
Query: 1418 IIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIM 1477
++ KI AYKLQLPE + +HPVFH+S LKK + ++ + ++K +P A++
Sbjct: 1410 VLEKIGQVAYKLQLPEDASIHPVFHVSQLKKHLGQRAVPMSNLPSMGPDGQIKTQPVAVL 1469
Query: 1478 DTR---ENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFP 1514
R N + LI W++L + +WED + + +P
Sbjct: 1470 QRRMIPRNGVAVTQWLILWENLGPADATWEDAAVIQSMYP 1509
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 960 bits (2481), Expect = 0.0
Identities = 554/1455 (38%), Positives = 790/1455 (54%), Gaps = 103/1455 (7%)
Query: 106 RRVDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE 164
++ D P ++G D ++ K E +FR R E++ M ++D W+ E
Sbjct: 58 KKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGT 117
Query: 165 RAWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREVLKGV 224
W FK+ + RF P L P L ++ G+V EY F+ L D +
Sbjct: 118 PTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRVQL 177
Query: 225 FLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVGGR 284
F GL + ++++ + LA M A +E P RG
Sbjct: 178 FTGGLLPPLSHAVRIHHPETLAAAMSLARQVELMERDRPAPPPLRAPPRG---------- 227
Query: 285 YYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGGQR 344
+ + A + + +L Q + P +R
Sbjct: 228 LLPAPAPRLALPAPA---------------QQLALPAPPAAAPQGRDAANP-------RR 265
Query: 345 LTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLIL-MEVEEDEEEEEIFEEAEDGEFV 403
LT E+ ER R+GLCF C +K+ + H + + +E+++ E + A D E
Sbjct: 266 LTPEEMAERCRQGLCFNCNEKFTRGHNRFCRRLFFVDGVEIDDVAIEGDAAAAAGDTEAP 325
Query: 404 LEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPVIA 463
+ SL++ G+ + +++ +G+ +L L+D G+T +FI ++ +P+ +
Sbjct: 326 V------FSLHAVAGVPIADTIQLQVTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQS 379
Query: 464 TSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGNIE 523
+ V NG + GV ++ + G F++ L G +VVLG WL +LG I
Sbjct: 380 SPRMTAIVANGERVACPGVIRDAAFTINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPIV 439
Query: 524 ANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEKTE 583
+F + + GQ+ +G A+ + + A G L
Sbjct: 440 WDFTSRSMAFQRDGQRFAWKG-------VASTSTTHLRTLAAASGTLLD----------- 481
Query: 584 AEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEK 643
++L Y +VF EP GLPP R DHAI L+ ++ +RPYRYP K+E+E+
Sbjct: 482 --------ELLVAYEDVFGEPTGLPPPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELER 533
Query: 644 LVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLD 703
M+ G++R S SPFSSP +LVKK DG WRFCVDYRA+N T+ D FPIP++DEL
Sbjct: 534 QCAAMIEQGVVRRSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVVDEL-- 591
Query: 704 EIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMN 763
A F+KLDL+SGYHQ+RM+ ED+ KTAFRTH+G YE+LV+PFGL NAP+TFQALMN
Sbjct: 592 --HGARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALMN 649
Query: 764 QVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIY 823
VLRP+LR+FVLVFF DILIYS+ H HLR VL VL+++ L + KC+FG P + Y
Sbjct: 650 DVLRPFLRRFVLVFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVSY 709
Query: 824 LGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLL 883
LGHVIS+AGVA DP+K++ + +W +P+ + +R FLGL GYYR+FV NY +A PL L
Sbjct: 710 LGHVISEAGVAMDPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTALT 769
Query: 884 KKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVA 943
KK+ F WTE+ AF LK +T+ PVL P+F KPF +E DAS G GAVL+Q+G PVA
Sbjct: 770 KKDGFSWTEDTAAAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPVA 829
Query: 944 YMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEE 1003
+ S+ + R +A + YEREL+ +V AV+ WR YL G +FV+ TD SL++L DQR+
Sbjct: 830 FFSRPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIP 889
Query: 1004 QQKWMSKLMGYDFEIKYKPGIENKAADALSRK------------LQFSAISSVQCAEWAD 1051
Q W+ KL+G+DF ++YKPG N ADALSR+ +F IS + A+ D
Sbjct: 890 QHHWVGKLLGFDFAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFISKLHDAQRQD 949
Query: 1052 LEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDT 1111
L DE + G + L L Y + +P S +++ H+
Sbjct: 950 PALTALRDE---------VSAGTRTGPWALVDDLLQYNSWLYIPPASPLAREIIEATHE- 999
Query: 1112 ALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQ 1171
GH G+ RT R+ F+ MK +Q++V+ C VCQR K E L+PAG L PLP+P
Sbjct: 1000 --DGHEGVKRTMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQG 1057
Query: 1172 GWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHG 1231
WTDI++DFI LP+ GK IL VVDRF+KY HFI L+HPY+A+ +A+ F E+V LHG
Sbjct: 1058 VWTDIALDFIEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHG 1117
Query: 1232 FPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGS 1291
P S+VSDRD +F STFW E+ +L GTKL ++A+HPQ+DGQ+E NR + YLRC+TG
Sbjct: 1118 VPQSMVSDRDPIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGD 1177
Query: 1292 KPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAER 1351
+P+QW +WL WAEF +NT Y S+++ TPF+ +YGR+ P I T V V K ER
Sbjct: 1178 RPRQWLRWLPWAEFIFNTAYQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEER 1237
Query: 1352 NLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPR 1411
L +++ LE+AQ + +KH R V Y+VGD L+++ SL + KL PR
Sbjct: 1238 AEFLFDIRYRLEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPR 1297
Query: 1412 YYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKV 1471
+YGPY I IN A +L+LP G+++H VFHI LLKK + P L +
Sbjct: 1298 FYGPYRITELINDVAVRLELPAGARLHDVFHIGLLKKFHGPPPGAPPALPPL-HHGAIAP 1356
Query: 1472 EPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDVA 1531
EPE + R R G + L++WK +WED L ++P QLED+LSL+ G DV
Sbjct: 1357 EPERAVRFRLAR-GVRQALVQWKGESPASATWEDIEVLRAKYPALQLEDELSLEEGGDV- 1414
Query: 1532 NPSSRPRFGNVYARR 1546
+G Y RR
Sbjct: 1415 ------MWGKTYTRR 1423
>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 949 bits (2453), Expect = 0.0
Identities = 545/1444 (37%), Positives = 805/1444 (55%), Gaps = 70/1444 (4%)
Query: 107 RVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 166
RV+ P F+G++ W T E +F + VE I + + RA W Q + +
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 167 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFEL----LAAPMRNADREVLK 222
W F + L RF ++ L + Q G+V EY E F + L+A NAD
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 223 GVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGGVG 282
F++GL+++IKA + + +L AL+ EE TA R W+
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQEEATTARR-----------WRRSEPSS 342
Query: 283 GRYYSSTGDSMGRIANSYVNFQSKGGTGNQDNEGKSLQNKGGTGNQDTEGKQPEKKWNGG 342
TG + S T N+D+ T+ K
Sbjct: 343 SHAGPKTGVQLS---------ASTKWTSNKDS---------------TQSASHSDKLESL 378
Query: 343 QRLTQTELQERSRKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFE-EAEDGE 401
+R R KGLC KC +KW H C+ + EV +EE+ E + E
Sbjct: 379 RRF-------RRAKGLCDKCAEKWNPGHKCAATAQLHAMEEVWSLLVDEEVPESDLSPPE 431
Query: 402 FVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIPV 461
E + +S ++ G T ++ K+ G I N +LILID G++ F++ L L+
Sbjct: 432 PAPEQLFVTISKSAWTGSTGRQTLKLNGSIQNHPLLILIDSGSSHTFLNDQLRPHLQGVT 491
Query: 462 IATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLGN 521
S V+V NGA + ++Q L L ++V+GMDWL S
Sbjct: 492 SMASTLQVQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFLPLPYYDMVVGMDWLESFSP 551
Query: 522 IEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEYQKEEEK 581
+ ++ + + QG ++LQG A + + E L +
Sbjct: 552 MRVDWAQKWLIIPYQGSSVLLQGN------TAGVPADTVIE--------LLFMESASSVS 597
Query: 582 TEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEI 641
+ + ++ +L+++ VF EP+GLPP R DHAI L EGA ++RPYRYP K++I
Sbjct: 598 SSPDSHPAIQALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVSVRPYRYPPALKDKI 657
Query: 642 EKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDEL 701
EK V+EML+ G+I+ S S F+SP +LVKKKD WRFCVDYR +N T+ K+P+P+ D+L
Sbjct: 658 EKQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKSKYPVPVFDQL 717
Query: 702 LDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQAL 761
+DE+ + FSKLDL++GYHQI +K + KTAF+TH GHYE+ V+ FGLT AP+TF +
Sbjct: 718 IDELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGLTGAPNTFLSA 777
Query: 762 MNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEI 821
MN+ L+P LRK LVFF DILIYSK+ E H HL+ VLQ+L +N KC F +
Sbjct: 778 MNETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNWKVKLSKCEFAKTNT 837
Query: 822 IYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQ 881
YLGH+IS+ GV+ PSKI+ + W +P K LR FLGL G+YR+FVK++ +++PL
Sbjct: 838 AYLGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLAGFYRKFVKHFGIISRPLFD 897
Query: 882 LLKKNS-FQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGR 940
LLKK++ F WT + ++AF LK+ + T PVL P+F +PF + TDAS G+GAVLMQ G
Sbjct: 898 LLKKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYGVGAVLMQSGH 957
Query: 941 PVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIM 1000
P+A++SK L + Q S YE+E MA++LA+ +WR YL ++F+I+TD RSL L +QR+
Sbjct: 958 PLAFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRSLAQLNEQRLH 1017
Query: 1001 GEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRKLQ-FSAISSVQCAEWADLEAEILG- 1058
QQK +KL G ++I Y+ G++N AADALSRK+Q S ++ + L+ + G
Sbjct: 1018 TIWQQKMYTKLAGLQYKIVYRKGVDNGAADALSRKVQEDSHCCAISHSVPTWLQEVVEGY 1077
Query: 1059 --DERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGH 1116
D +++L +L + L +G + +K+RI L VL+ HDTA+GGH
Sbjct: 1078 DKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQKVLQAMHDTAVGGH 1137
Query: 1117 AGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDI 1176
+G TY ++ +FYW GM+ D+ YVQ C VCQ++K + G LQPL +P Q W I
Sbjct: 1138 SGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQPLEVPPQAWHTI 1197
Query: 1177 SMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSI 1236
S+DFI GLP++ + ILVVVD+F+KY HF+ L HP+ A ++A VF+ V KLHG P +I
Sbjct: 1198 SLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLDNVYKLHGLPVNI 1257
Query: 1237 VSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQW 1296
+SDRDR+F S+FW ++F++ GT L SS+YHPQ+DGQTE +N+C+ET+LRC + P +W
Sbjct: 1258 ISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETFLRCYVHTCPSRW 1317
Query: 1297 PKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILE 1356
WLS AE+WYNT HS + TPF+ LYG D++ E+E W ER L+ +
Sbjct: 1318 SAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKERELMTK 1377
Query: 1357 ELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPY 1416
+K +L +AQ+RM++QA+K R + + VGD VYLK+QPY S+A RSN KLS +++GP+
Sbjct: 1378 VIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRSNHKLSFKFFGPF 1437
Query: 1417 PIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAI 1476
I ++ AY+L LP S +HP+FH+S LK+ + G + P + ++V +
Sbjct: 1438 QITDRLGSVAYRLALPASSSIHPIFHVSQLKRVI--GRDQRASPQLPQDVGPIQVPTRIL 1495
Query: 1477 MDTRENRDGDL--EVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDVANPS 1534
+R G+L +V + W + +WED L +FP + D+ +G +V+ S
Sbjct: 1496 QRRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFPKALIWDQAGARGQGNVSKAS 1555
Query: 1535 SRPR 1538
S +
Sbjct: 1556 SEDK 1559
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 933 bits (2412), Expect = 0.0
Identities = 508/1190 (42%), Positives = 734/1190 (60%), Gaps = 67/1190 (5%)
Query: 340 NGGQRLTQTELQERS-RKGLCFKCGDKWGKEHICSMKNYQLILMEVEEDEEEEEIFEEAE 398
+GG E++++S GLC+ C +K+ EH K QL M+V DEE E+ E
Sbjct: 286 SGGSYRPVKEVEQKSDHLGLCYFCDEKFTPEHYLVHKKTQLFRMDV--DEEFEDAVEVLS 343
Query: 399 DGEFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELE 458
D + + + Q+S+N+ G++ ++ VKG + R++ ILID G+T NFI + +L
Sbjct: 344 DDDHE-QKPMPQISVNAVSGISGYKTMGVKGTVDKRDLFILIDSGSTHNFIDSTVAAKLG 402
Query: 459 IPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLAS 518
V + V V +G K G K ++Q ++ L G ++VLG+ WL +
Sbjct: 403 CHVESAGLTKVAVADGRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLET 462
Query: 519 LGNIEANFQELIIQWVSQGQKMVLQGEPSVCKVAANWKSIKITEQQEAEGYYLSY----- 573
LG I F++L +Q+ + Q++ L G + + + IK + Q+ + +
Sbjct: 463 LGRISWEFKKLEMQFFYKNQRVWLHGI-----ITGSVRDIKAHKLQKTQADQIQLAMVCV 517
Query: 574 -EYQKEEEK--------TEAEVPEGM-RKILEEYPEVFQEPKGLPP-RRTTDHAIQLQEG 622
E +EE+ T V E + + I+EE+P+VF EP LPP R DH I+L EG
Sbjct: 518 REVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEG 577
Query: 623 ASIPNIRPYRYPFYQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYR 682
A+ N RPYRY +QK+EI+K+V++M+ SG I+ S+SPF+SP +LVKKKDG WR CVDY
Sbjct: 578 ANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYT 637
Query: 683 AINKATIPDKFPIPIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHY 742
+N T+ D+F IP+I++L+DE+G +VVFSK+DL++GYHQ+RM +DI KTAF+TH GH+
Sbjct: 638 ELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHF 697
Query: 743 EYLVLPFGLTNAPSTFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVL 802
EYLV+ FGLTNAP+TFQ+LMN V R +LRKFVLVFF DILIYS + E HK+HLR+V +V+
Sbjct: 698 EYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVM 757
Query: 803 KENNLVANQKKCSFGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLT 862
+ + L A K +LGH IS + DP+KI+ + +WP P VK +RGFLG
Sbjct: 758 RLHKLFAKGSK--------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFA 809
Query: 863 GYYRRFVKNYSKLAQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFIL 922
GYYRRFV+N+ +A PL+ L K + F W+ EA AF LK V+ PVL P FDK F++
Sbjct: 810 GYYRRFVRNFGVIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMV 869
Query: 923 ETDASGKGLGAVLMQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQF 982
ETDA G+G+ AVLMQ+G P+AY+S+ L + S+YE+EL+A + AV+KWRHYLL S F
Sbjct: 870 ETDACGQGIRAVLMQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHF 929
Query: 983 VIHTDQRSLRFLADQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSR----KLQF 1038
+I TDQRSL++L +QR+ QQ+W+ KL+ +D+EI+Y+ G EN ADALSR ++
Sbjct: 930 IIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLH 989
Query: 1039 SAISSVQCAEWADLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGS 1098
A+S V+C +++ D + ++ L ++ Y + L K +IV+P
Sbjct: 990 MALSIVECDFLKEIQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDV 1049
Query: 1099 TKILTVLKEFHDTALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALN 1158
+L+ H + +GG +G +++R+ +LFYW+GM DIQ +++ C CQ+ K +
Sbjct: 1050 EITNKLLQWLHCSGMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAA 1109
Query: 1159 PAGFLQPLPIPSQGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEI 1218
G LQPLPIP + W D+SMDFI GLP + GK I+VVVDR +K AHF+AL+HPY+A +
Sbjct: 1110 YPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTV 1169
Query: 1219 AEVFIKEVVKLHGFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVN 1278
A+ F+ V K HG PTSIVSDRD +F S FW E FKL G +L+ SSAYHPQ+DGQTEVVN
Sbjct: 1170 AQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVN 1229
Query: 1279 RCVETYLRCVTGSKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSL 1338
RC+E YLRC+ ++P W KWL AE+WYNTNYHS+ + TPF+ +YG+ P+
Sbjct: 1230 RCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGK 1289
Query: 1339 TSVDEVEKWTAERNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLK 1398
+ V V + ER +L LK +L +AQ+RM+Q A++HR + +++GD VY+K+QPY+ +
Sbjct: 1290 SKVAVVARSLQERENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQ 1349
Query: 1399 SLAKRSNQKLSPRYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQP 1458
S+ R NQKLSP+Y+GPY II K + V S
Sbjct: 1350 SVVLRVNQKLSPKYFGPYKIIEKCG-----------------------EVMVGNVTTSTQ 1386
Query: 1459 LPAALTEEWELKVEPEAIMD----TRENRDGDLEVLIRWKDLPTFEDSWE 1504
LP+ L + +E PE I++ R+ R + VL++W P E +W+
Sbjct: 1387 LPSVLPDIFE--KAPEYILERKLVKRQGRAATM-VLVKWIGEPVEEATWK 1433
Score = 70.1 bits (170), Expect = 6e-10
Identities = 68/306 (22%), Positives = 126/306 (40%), Gaps = 36/306 (11%)
Query: 1 MVLTRGAMESRV--------DDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTP 52
MV+TR + E V D + +T+++E+ EQ + + + D R+
Sbjct: 1 MVVTRSSQEEDVKGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMA--DMMSAMSRTTAK 58
Query: 53 RHRRSSRE-HNSVSTARTYDGSRTGSRTGSRTASRS-------REHHEHYHHRSHLRAVT 104
R + SV + T +R+G R R +E + Y + + L
Sbjct: 59 RVTEGEKVLDRSVPRSSTSSMARSGFVEHQRDFQRDFRPEMVRQEVNNQYGNLTRLG--- 115
Query: 105 GRRVDIPMFNGNDAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLE 164
++D P F+G+ W+ KVE FF + E K++MV I + A W + + +
Sbjct: 116 --KIDFPRFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIG 173
Query: 165 R----AWEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELLAAPMRNADREV 220
W + + L RF+ A +P L +++ ++EY + FEL+ + N E
Sbjct: 174 LDVFFNWPEYVKLLKDRFEDA-CDDPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEY 231
Query: 221 LKGVFLNGLQEEIKAEMKLYPADDLAELMDRALLLEEKNTAMRGGKPKEEDKRGWKEKGG 280
L V+L GL+ + + ++++ + + + E + PK+ W +KG
Sbjct: 232 LVSVYLAGLRTDTQMHVRMFEPKTVRDCLRLGKYYERAH-------PKKTVSSTWSQKGT 284
Query: 281 VGGRYY 286
G Y
Sbjct: 285 RSGGSY 290
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 927 bits (2395), Expect = 0.0
Identities = 505/1216 (41%), Positives = 710/1216 (57%), Gaps = 66/1216 (5%)
Query: 343 QRLTQTELQERSRKGLCFKCGDKWGKEH--ICSMKNYQLILMEVEEDEEEEEIFEEAEDG 400
+RL+Q E ER R GLC+ C +K+ + H +C Y + V + E+ + +DG
Sbjct: 197 KRLSQEEQAERRRLGLCYNCDEKYSRGHNRVCRRIFY---IDGVTLTDAEDAALDADQDG 253
Query: 401 EFVLEGKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGATINFISQDLVVELEIP 460
E + SL + G+ + +V+ +G + L+D +T NFI+++ +
Sbjct: 254 EAPV------FSLQAVAGVPICDTMQVRVMLGAVTLTALLDTSSTHNFIAEEAARRTNLA 307
Query: 461 VIATSEYVVEVGNGAKERNSGVCKNLKLEVQGIPIMQHFFILGLGGTEVVLGMDWLASLG 520
+ V NG K + GV + + + G F++ L G ++VLG W+ +LG
Sbjct: 308 IQPKPRLTATVANGEKIQCPGVLRQAPITIDGEEFHVDLFVMPLAGYDLVLGTQWMVTLG 367
Query: 521 NIEANFQELIIQWVSQGQKM-----VLQGEPSVCKVAANWKSIKITEQQEAEGYYLSYEY 575
I +F + + G ++ + EP+V +AA+ + +G S+E
Sbjct: 368 PITWDFTARTMSFSRHGMEVRWSDVAARPEPTVAVIAAS--------EVLLDGLLASFE- 418
Query: 576 QKEEEKTEAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPF 635
VF EP GLPP+R DH+I L+ GA +RPYRY
Sbjct: 419 -----------------------GVFAEPSGLPPQRARDHSIVLKPGALPVAVRPYRYLA 455
Query: 636 YQKNEIEKLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPI 695
K+E+E ++ GI+R S S FSSP +LVKK DG WRFCVDYRA+N T+ D FPI
Sbjct: 456 AHKDELELQCAAIIEQGIVRRSDSAFSSPVLLVKKPDGSWRFCVDYRALNALTVKDAFPI 515
Query: 696 PIIDELLDEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAP 755
P+IDELLDE+ A F+KLDL+SGYHQ+RM+ D+ KTAF TH+G YE+LV+PFGL NAP
Sbjct: 516 PVIDELLDELHGARFFTKLDLRSGYHQVRMRPADVHKTAFHTHDGLYEFLVMPFGLCNAP 575
Query: 756 STFQALMNQVLRPYLRKFVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCS 815
TFQALMN VLRP+LR+FVLVFF DILIYSK H H+R VL L+ + L + KC+
Sbjct: 576 VTFQALMNDVLRPFLRRFVLVFFDDILIYSKTWADHLRHIRAVLSELQRHQLFLKRAKCA 635
Query: 816 FGQPEIIYLGHVISQAGVAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKL 875
F + YLGHVIS+AGVA DP+K++ + DWP P+ + +R FLGL GYYR+FV NY +
Sbjct: 636 FASASVAYLGHVISEAGVAMDPAKVQAVRDWPAPRSARAVRSFLGLAGYYRKFVHNYGAI 695
Query: 876 AQPLNQLLKKNSFQWTEEATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVL 935
A PL LLKK+SF W+ EA AF LK +TT PVL P+F KPFI+E DAS G GAVL
Sbjct: 696 AAPLTALLKKDSFSWSGEAATAFDALKAAVTTAPVLAMPDFSKPFIVECDASSHGFGAVL 755
Query: 936 MQEGRPVAYMSKTLSDRAQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLA 995
+Q+ PVA+ S+ ++ R +A + YEREL+ V AV+ WR YL G +FV+ TD SL++L
Sbjct: 756 VQDSHPVAFFSRPVAPRHRALAAYERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLL 815
Query: 996 DQRIMGEEQQKWMSKLMGYDFEIKYKPGIENKAADALSRK-----LQFSAISSVQCAEWA 1050
DQR+ Q W+ KL+G+DF ++YKPG N ADALSR+ A+S+ + ++
Sbjct: 816 DQRLATIPQHHWVGKLLGFDFTVEYKPGHANAVADALSRRDTPEDGTILALSAPR-FDFV 874
Query: 1051 DLEAEILGDERYRKVLQELATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHD 1110
D + + E T G+ A+ + G + Y R+ +P S + ++ H+
Sbjct: 875 DRLRHAQTTDPALVAMHEELTSGSQALPWAAVDGMIQYSGRLYIPPASPLLPELMAAVHE 934
Query: 1111 TALGGHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPS 1170
GH G+ RT R+ F++ MK +Q+ V+ C CQR K E L+PAG L PLP+P
Sbjct: 935 E---GHEGVQRTLHRLRRDFHFPNMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQ 991
Query: 1171 QGWTDISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLH 1230
WTDI++DF+ LP+ GK IL VVDRF+KY HFI LSHPY+A+ +A+ F ++V+LH
Sbjct: 992 GVWTDIALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLH 1051
Query: 1231 GFPTSIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTG 1290
G P SIVSDRD VF S FW E+ L GTKL ++A+HPQ+DGQ+E NR + YLRC+TG
Sbjct: 1052 GMPQSIVSDRDTVFTSHFWRELMWLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTG 1111
Query: 1291 SKPKQWPKWLSWAEFWYNTNYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAE 1350
+P+QW +WL WAE+ +NT Y ++++ TPF+ +YGR+ P I T V V K E
Sbjct: 1112 DRPRQWLQWLPWAEYVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEE 1171
Query: 1351 RNLILEELKSNLEKAQNRMRQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSP 1410
R+ L +++S LE+AQ ++ +K R V Y+VGD L+++ SL + KL P
Sbjct: 1172 RDKFLADIRSRLEQAQATQKRHYDKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRP 1231
Query: 1411 RYYGPYPIIAKINPAAYKLQLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELK 1470
R+YGPY I IN A +L LP +++H VFHI LLKK + P P +
Sbjct: 1232 RFYGPYRITELINDVAVRLALPPRARLHDVFHIGLLKK-FHGSPPDAPPPLPAVHHGAVV 1290
Query: 1471 VEPEAIMDTRENRDGDLEVLIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDV 1530
EPE + TR R G ++LI+WK +WED + ++P+ QL D+L+L G DV
Sbjct: 1291 PEPERAVKTRLAR-GVRQLLIQWKGESPASATWEDADAFIAKYPDFQLGDELALDEGGDV 1349
Query: 1531 ANPSSRPRFGNVYARR 1546
+G YARR
Sbjct: 1350 -------MWGRTYARR 1358
Score = 65.9 bits (159), Expect = 1e-08
Identities = 45/153 (29%), Positives = 71/153 (45%), Gaps = 7/153 (4%)
Query: 108 VDIPMFNGN-DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERA 166
+D P ++G D +V + E +F R+ E EK+ M +ED A W+ +E
Sbjct: 1 MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60
Query: 167 WEPFKQALFRRFQPALLQNPFGPLLSVKQKGSVMEYKENFELL---AAPMRNADREVLKG 223
W FK L RF P L P L ++ G+V EY+ +F+ L A P++ A L
Sbjct: 61 WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQ---LVQ 117
Query: 224 VFLNGLQEEIKAEMKLYPADDLAELMDRALLLE 256
+F GL + ++++ LA M A +E
Sbjct: 118 LFTGGLLPPLSHAVRIHNPQSLAAAMSLARQVE 150
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 879 bits (2270), Expect = 0.0
Identities = 442/941 (46%), Positives = 615/941 (64%), Gaps = 8/941 (0%)
Query: 593 ILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIEKLVKEMLNSG 652
+LEE+ +VF EP GLPP R H IQL G + +RPYRYP K+E+E+ + M +G
Sbjct: 375 LLEEFADVFTEPTGLPPARDRSHRIQLLPGTAPVAVRPYRYPVRHKDELERQCRVMEENG 434
Query: 653 IIRHSTSPFSSPAILVKKKDGGWRFCVDYRAINKATIPDKFPIPIIDELLDEIGAAVVFS 712
+I STS FSSP +LVKK DG WRFCV+YRA+N+ T+ DK+PIP++DELLDE+ A +FS
Sbjct: 435 LIHRSTSAFSSPVLLVKKADGSWRFCVNYRALNERTVKDKYPIPVVDELLDELHGAAIFS 494
Query: 713 KLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALMNQVLRPYLRK 772
KLDL+SGYHQ+RM +DI KTAFRTH+G YE+LV+PFGLTNA +TFQ+LMN VLRP+LR+
Sbjct: 495 KLDLRSGYHQVRMHPDDIDKTAFRTHDGLYEFLVIPFGLTNALATFQSLMNDVLRPFLRR 554
Query: 773 FVLVFFYDILIYSKNEELHKDHLRIVLQVLKENNLVANQKKCSFGQPEIIYLGHVISQAG 832
FVLVFF DIL+YS H HLR V L L KCSFG P + YLGH+ISQ G
Sbjct: 555 FVLVFFDDILVYSPTWTSHLQHLRTVFTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHG 614
Query: 833 VAADPSKIKDMLDWPIPKEVKGLRGFLGLTGYYRRFVKNYSKLAQPLNQLLKKNSFQWTE 892
A D +KI+ + +WP P+ K LRGFLGL YYR+F++++ +A PL QLL+K+SF W
Sbjct: 615 FAMDAAKIQAVAEWPRPRSPKELRGFLGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAP 674
Query: 893 EATQAFVKLKEVMTTVPVLVPPNFDKPFILETDASGKGLGAVLMQEGRPVAYMSKTLSDR 952
AF +LK +TT PVL P+F++PF++E DASG G GAVL Q P+AY S+ ++ R
Sbjct: 675 ATDDAFQRLKLALTTTPVLSLPDFNRPFVVECDASGTGFGAVLHQGEDPIAYFSRPIATR 734
Query: 953 AQAKSVYERELMAVVLAVQKWRHYLLGSQFVIHTDQRSLRFLADQRIMGEEQQKWMSKLM 1012
A + YEREL+++V AV+ WR YL G QF++ TD SL+FL DQR+ Q W+SKL+
Sbjct: 735 HHALAAYERELISLVQAVRHWRPYLWGRQFIVKTDHYSLKFLLDQRLSTIPQHHWVSKLL 794
Query: 1013 GYDFEIKYKPGIENKAADALSRKLQFSAISSVQCAEWADLEAEI--LGD-ERYRKVLQEL 1069
G+DF ++YKPG +N AADALS + + + V DL +I GD + + L++
Sbjct: 795 GFDFVVEYKPGKQNAAADALSCRAAPDSQAFVLSTPTFDLLKDIRTAGDTDPALQALRDE 854
Query: 1070 ATQGNSAIGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALGGHAGIFRTYKRISAL 1129
G + + G + YK RI +P GS + V+ HD GH GI +T R+
Sbjct: 855 INSGTRTTPWAVIDGLVTYKRRIYIPPGSPWVSVVVAAAHD---DGHEGIQKTLHRLRRD 911
Query: 1130 FYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWTDISMDFIGGLPKAMG 1189
F+ + + +++Q C CQRNK + L+PAG L PLP+PS W+D++MDF+ GLP+ G
Sbjct: 912 FHTPDDRRVVHDHIQGCLTCQRNKTDHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVGG 971
Query: 1190 KDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVKLHGFPTSIVSDRDRVFLSTFW 1249
K IL VVDRF+KYAH IAL+H Y A+ +A F ++V+LHG P SIVSDRD VF S FW
Sbjct: 972 KSVILTVVDRFSKYAHLIALAHSYTAETVARAFFVDIVRLHGVPESIVSDRDPVFTSAFW 1031
Query: 1250 SEMFKLAGTKLKFSSAYHPQTDGQTEVVNRCVETYLRCVTGSKPKQWPKWLSWAEFWYNT 1309
+ +F TKL S+A+HPQ+DGQ++ VN+ + LRC+TG + +QW +WL WAE+ YNT
Sbjct: 1032 TALFTATCTKLHRSTAFHPQSDGQSKAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYNT 1091
Query: 1310 NYHSAIKTTPFKALYGRESPVIFKGNDSLTSVDEVEKWTAERNLILEELKSNLEKAQNRM 1369
++H+A++ TPFK +YGR+ P I + S V V + ER+ L +++ LE+AQ
Sbjct: 1092 SFHAALRDTPFKLVYGRDPPSIRAYDASELRVAAVAQSIEERDAFLADVRLRLEQAQQYA 1151
Query: 1370 RQQANKHRRDVQYEVGDLVYLKIQPYKLKSLAKRSNQKLSPRYYGPYPIIAKINPAAYKL 1429
++ ++ R+V +EVG V+L+++ SL + KL PR+YGPY ++A IN AY+L
Sbjct: 1152 KRYYDQKHREVSFEVGAWVWLRVRHRVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYRL 1211
Query: 1430 QLPEGSQVHPVFHISLLKKAVNAGVQSQPLPAALTEEWELKVEPEAIMDTRENRDGDLEV 1489
LP G+++H VFH+ LLK V S PL + + P ++ R R G ++
Sbjct: 1212 ALPPGTRLHDVFHVGLLKPFVGVS-PSAPLALPPIQHGAAQPVPRQVLRARLAR-GVRQL 1269
Query: 1490 LIRWKDLPTFEDSWEDFSKLLDQFPNHQLEDKLSLQGGRDV 1530
L++W+ LP SWED +++P+ QL D+L ++GGRDV
Sbjct: 1270 LVQWEGLPASATSWEDLDDFRNRYPSFQLADELLIEGGRDV 1310
Score = 58.9 bits (141), Expect = 1e-06
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 25/210 (11%)
Query: 11 RVDDLERSLTEMKEVAHEQFEELRRLFLSRDRRRTRGRSNTPRH--------RRSSR-EH 61
R DD+ R L E+ + + ++ R L+ +R R+ + R R R H
Sbjct: 12 RFDDMMRRLEELSGLITDIDQQQRTQTLAINRLENGARAPSSRFDDLSDVGDRNGGRFAH 71
Query: 62 NSVSTARTY----DGSRTGSRTGSRTASRSREHHEHYHHRSHLRAVTGRRVDIPMFNGN- 116
++V Y DG R G + YH ++D P F+G
Sbjct: 72 HNVGRGDRYGRGGDGFHGHGRPGGHRFDGDGDRPPRYH-----------KLDFPKFDGRG 120
Query: 117 DAYGWVTKVERFFRLSRVEEAEKIEMVMIAMEDRALGWFQWWEEQTLERAWEPFKQALFR 176
D ++ + E+FFR R E K+ + + D A W+ E +W F + L
Sbjct: 121 DPLPFLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLERDHEPPSWHRFSELLNM 180
Query: 177 RFQPALLQNPFGPLLSVKQKGSVMEYKENF 206
R+ P L P G L + ++ +V +Y E F
Sbjct: 181 RYGPPLHSTPLGELAACRRTTTVDDYAERF 210
Score = 39.7 bits (91), Expect = 0.82
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 389 EEEEIFEEAEDGEFVLE----GKVLQLSLNSKEGLTSNRSFKVKGKIGNREVLILIDCGA 444
E++++ E+ D + + L++SL++ G+ ++ + + +G+ ++ LID G
Sbjct: 222 EDQQLGEDDTDNDSATDQADAAATLRISLHAATGVRASDAMHITAHLGDTDLYTLIDSGL 281
Query: 445 TINFISQDLVVELEIPVIATSEYVVEVGNGAKERNSGVCKNLKLEVQG 492
F+SQD + V V NG K GV ++ L++ G
Sbjct: 282 MHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPLQIAG 329
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,717,275,437
Number of Sequences: 2540612
Number of extensions: 122731224
Number of successful extensions: 524274
Number of sequences better than 10.0: 36801
Number of HSP's better than 10.0 without gapping: 3560
Number of HSP's successfully gapped in prelim test: 33263
Number of HSP's that attempted gapping in prelim test: 447197
Number of HSP's gapped (non-prelim): 43366
length of query: 1558
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1416
effective length of database: 502,593,490
effective search space: 711672381840
effective search space used: 711672381840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0106.8