BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0104.7
(76 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB87743.1| transport inhibitor response 1 (TIR1) [Arabidops... 95 5e-19
gb|AAQ56839.1| At3g26830 [Arabidopsis thaliana] gi|9279671|dbj|B... 92 3e-18
gb|AAM20393.1| transport inhibitor response 1, putative [Arabido... 92 4e-18
emb|CAB77804.1| putative homolog of transport inhibitor response... 89 4e-17
gb|AAK76473.1| putative F-box protein GRR1 protein 1, AtFBL18 [A... 89 4e-17
gb|AAK01147.1| GRR1-like protein 1 [Arabidopsis thaliana] 89 4e-17
gb|AAK16647.1| F-box containing protein TIR1 [Populus tremula x ... 82 3e-15
emb|CAD40545.1| OSJNBa0072K14.18 [Oryza sativa (japonica cultiva... 80 1e-14
gb|AAM98092.1| AT5g49980/K9P8_12 [Arabidopsis thaliana] gi|87774... 79 2e-14
emb|CAB79349.1| transport inhibitor response-like protein [Arabi... 77 9e-14
gb|AAP21148.1| At4g24390/T22A6_220 [Arabidopsis thaliana] gi|201... 77 9e-14
ref|XP_507533.1| PREDICTED OJ1175_B01.8-1 gene product [Oryza sa... 74 7e-13
gb|AAM91386.1| At2g39940/T28M21.10 [Arabidopsis thaliana] gi|208... 64 8e-10
gb|AAU90110.1| putative LRR-containing F-box protein [Oryza sati... 60 1e-08
gb|AAR82926.1| coronatine-insensitive 1 [Lycopersicon esculentum... 60 1e-08
gb|AAO38719.1| COI1 [Oryza sativa (japonica cultivar-group)] gi|... 58 5e-08
ref|NP_915536.1| P0529E05.15 [Oryza sativa (japonica cultivar-gr... 58 5e-08
ref|NP_912552.1| Putative F-box containing protein TIR1 [Oryza s... 57 1e-07
ref|XP_493919.1| similar to Arabidopsis thaliana transport inhib... 56 3e-07
ref|NP_912346.1| unknown protein [Oryza sativa (japonica cultiva... 53 2e-06
>emb|CAB87743.1| transport inhibitor response 1 (TIR1) [Arabidopsis thaliana]
gi|25054937|gb|AAN71945.1| putative transport inhibitor
response TIR1, AtFBL1 protein [Arabidopsis thaliana]
gi|18412567|ref|NP_567135.1| transport inhibitor
response 1 (TIR1) (FBL1) [Arabidopsis thaliana]
gi|2352494|gb|AAB69176.1| transport inhibitor response
1 [Arabidopsis thaliana] gi|2352492|gb|AAB69175.1|
transport inhibitor response 1 [Arabidopsis thaliana]
Length = 594
Score = 94.7 bits (234), Expect = 5e-19
Identities = 44/71 (61%), Positives = 51/71 (70%)
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
A FP+EVLE V ++ KDR+SVSLVCK WY ERW RR VFIGNCY+VSP + RR
Sbjct: 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65
Query: 66 SNIRSVTLKGK 76
+RSV LKGK
Sbjct: 66 PKVRSVELKGK 76
>gb|AAQ56839.1| At3g26830 [Arabidopsis thaliana] gi|9279671|dbj|BAB01228.1|
transport inhibitor response-like protein [Arabidopsis
thaliana] gi|17064984|gb|AAL32646.1| transport
inhibitor response-like protein [Arabidopsis thaliana]
gi|18405102|ref|NP_566800.1| transport inhibitor
response protein, putative [Arabidopsis thaliana]
Length = 575
Score = 92.4 bits (228), Expect = 3e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FPDEV+E V V S KDR+++SLVCK WY ER+SR+ VFIGNCY+++PE L RR +
Sbjct: 4 FPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCL 63
Query: 69 RSVTLKGK 76
+S+TLKGK
Sbjct: 64 KSLTLKGK 71
>gb|AAM20393.1| transport inhibitor response 1, putative [Arabidopsis thaliana]
gi|8698729|gb|AAF78487.1| Strong similarity to
transport inhibitor response 1 (TIR1) from Arabidopsis
thaliana gb|AF005047 gi|18391439|ref|NP_563915.1|
transport inhibitor response protein, putative
[Arabidopsis thaliana] gi|25083863|gb|AAN72129.1|
transport inhibitor response 1, putative [Arabidopsis
thaliana] gi|25352269|pir||F86261 F13K23.7 protein -
Arabidopsis thaliana
Length = 577
Score = 91.7 bits (226), Expect = 4e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FPDEV+E V V S KDR+S+SLVCK W+ ER+SR+ VFIGNCY+++PE L RR +
Sbjct: 4 FPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCL 63
Query: 69 RSVTLKGK 76
+S+TLKGK
Sbjct: 64 KSLTLKGK 71
>emb|CAB77804.1| putative homolog of transport inhibitor response 1 [Arabidopsis
thaliana] gi|23297438|gb|AAN12969.1| putative F-box
protein AtFBL18 [Arabidopsis thaliana]
gi|18412177|ref|NP_567255.1| F-box family protein
(FBL18) [Arabidopsis thaliana]
gi|4262147|gb|AAD14447.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|25352265|pir||E85040 hypothetical protein AT4g03190
[imported] - Arabidopsis thaliana
Length = 585
Score = 88.6 bits (218), Expect = 4e-17
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRR +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 65 RSLTLKGK 72
>gb|AAK76473.1| putative F-box protein GRR1 protein 1, AtFBL18 [Arabidopsis
thaliana]
Length = 585
Score = 88.6 bits (218), Expect = 4e-17
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRR +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 65 RSLTLKGK 72
>gb|AAK01147.1| GRR1-like protein 1 [Arabidopsis thaliana]
Length = 585
Score = 88.6 bits (218), Expect = 4e-17
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRR +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 65 RSLTLKGK 72
>gb|AAK16647.1| F-box containing protein TIR1 [Populus tremula x Populus
tremuloides]
Length = 635
Score = 82.4 bits (202), Expect = 3e-15
Identities = 41/74 (55%), Positives = 52/74 (69%), Gaps = 4/74 (5%)
Query: 7 SPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILT 62
+P+PD+VLE VL V SRKDR++ SLVC+ WY E +R +FIGNCY+VSP+
Sbjct: 63 APYPDQVLENVLENVLWFLTSRKDRNAASLVCRSWYRVEALTRSDLFIGNCYAVSPKRAM 122
Query: 63 RRSSNIRSVTLKGK 76
R + IRSVTLKGK
Sbjct: 123 SRFTRIRSVTLKGK 136
>emb|CAD40545.1| OSJNBa0072K14.18 [Oryza sativa (japonica cultivar-group)]
gi|50923929|ref|XP_472325.1| OSJNBa0072K14.18 [Oryza
sativa (japonica cultivar-group)]
Length = 575
Score = 80.1 bits (196), Expect = 1e-14
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP+EV+E + + +++DR++VSLVCK WY ER SRR VF+GNCY+V + R N+
Sbjct: 4 FPEEVVEHIFSFLPAQRDRNTVSLVCKVWYEIERLSRRGVFVGNCYAVRAGRVAARFPNV 63
Query: 69 RSVTLKGK 76
R++T+KGK
Sbjct: 64 RALTVKGK 71
>gb|AAM98092.1| AT5g49980/K9P8_12 [Arabidopsis thaliana] gi|8777429|dbj|BAA97019.1|
transport inhibitor response 1 protein [Arabidopsis
thaliana] gi|28416503|gb|AAO42782.1| AT5g49980/K9P8_12
[Arabidopsis thaliana] gi|18423092|ref|NP_568718.1|
transport inhibitor response protein, putative
[Arabidopsis thaliana] gi|15912307|gb|AAL08287.1|
AT5g49980/K9P8_12 [Arabidopsis thaliana]
Length = 619
Score = 79.3 bits (194), Expect = 2e-14
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 1 NILNQASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSV 56
N ++ + FPD VLE VL V SR DR++ SLVCK W+ E +R VFIGNCY++
Sbjct: 42 NCISNSQTFPDHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYAL 101
Query: 57 SPEILTRRSSNIRSVTLKGK 76
SP LT+R +RS+ LKGK
Sbjct: 102 SPARLTQRFKRVRSLVLKGK 121
>emb|CAB79349.1| transport inhibitor response-like protein [Arabidopsis thaliana]
gi|5051781|emb|CAB45074.1| transport inhibitor
response-like protein [Arabidopsis thaliana]
gi|7487322|pir||T09902 hypothetical protein T22A6.220 -
Arabidopsis thaliana
Length = 614
Score = 77.4 bits (189), Expect = 9e-14
Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 1 NILNQASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSV 56
N + P PD VLE VL V SR DR++VSLVC+ WY E +R VFIGNCYS+
Sbjct: 33 NFKSSPPPCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSL 92
Query: 57 SPEILTRRSSNIRSVTLKGK 76
SP L R +RS+ LKGK
Sbjct: 93 SPARLIHRFKRVRSLVLKGK 112
>gb|AAP21148.1| At4g24390/T22A6_220 [Arabidopsis thaliana]
gi|20147209|gb|AAM10320.1| AT4g24390/T22A6_220
[Arabidopsis thaliana] gi|42573021|ref|NP_974607.1|
F-box family protein (FBX14) [Arabidopsis thaliana]
gi|30686516|ref|NP_567702.2| F-box family protein
(FBX14) [Arabidopsis thaliana]
Length = 623
Score = 77.4 bits (189), Expect = 9e-14
Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 1 NILNQASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSV 56
N + P PD VLE VL V SR DR++VSLVC+ WY E +R VFIGNCYS+
Sbjct: 42 NFKSSPPPCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSL 101
Query: 57 SPEILTRRSSNIRSVTLKGK 76
SP L R +RS+ LKGK
Sbjct: 102 SPARLIHRFKRVRSLVLKGK 121
>ref|XP_507533.1| PREDICTED OJ1175_B01.8-1 gene product [Oryza sativa (japonica
cultivar-group)] gi|51964402|ref|XP_506986.1| PREDICTED
OJ1175_B01.8-1 gene product [Oryza sativa (japonica
cultivar-group)] gi|50912987|ref|XP_467901.1| putative
F-box containing protein TIR1 [Oryza sativa (japonica
cultivar-group)] gi|47497357|dbj|BAD19396.1| putative
F-box containing protein TIR1 [Oryza sativa (japonica
cultivar-group)]
Length = 637
Score = 74.3 bits (181), Expect = 7e-13
Identities = 36/71 (50%), Positives = 47/71 (65%), Gaps = 4/71 (5%)
Query: 10 PDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
PD+VLE VL V + +DR++ SLVC+ WY AE +RR +FIGNCY+VSP R
Sbjct: 64 PDQVLENVLESVLEFLTAARDRNAASLVCRSWYRAEAQTRRELFIGNCYAVSPRRAVERF 123
Query: 66 SNIRSVTLKGK 76
+R+V LKGK
Sbjct: 124 GGVRAVVLKGK 134
>gb|AAM91386.1| At2g39940/T28M21.10 [Arabidopsis thaliana]
gi|2088647|gb|AAB95279.1| coronatine-insensitive 1
(COI1), AtFBL2 [Arabidopsis thaliana]
gi|15010648|gb|AAK73983.1| At2g39940/T28M21.10
[Arabidopsis thaliana] gi|59797640|sp|O04197|COI1_ARATH
Coronatine-insensitive protein 1 (F-box/LRR-repeat
protein 2) (AtFBL2) (COI-1) (AtCOI1)
gi|3158394|gb|AAC17498.1| LRR-containing F-box protein
[Arabidopsis thaliana] gi|18405209|ref|NP_565919.1|
coronatine-insensitive 1 / COI1 (FBL2) [Arabidopsis
thaliana]
Length = 592
Score = 64.3 bits (155), Expect = 8e-10
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 11 DEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIRS 70
D+V+E+V+ + KDR S SLVC+ W+ + +R V + CY+ +P+ L+RR N+RS
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 71 VTLKGK 76
+ LKGK
Sbjct: 78 LKLKGK 83
>gb|AAU90110.1| putative LRR-containing F-box protein [Oryza sativa (japonica
cultivar-group)]
Length = 597
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
A P+E L VLG V +DR +VSLVC+ W+ + +R+ V + CY+ SP L R
Sbjct: 20 AGSIPEEALHLVLGYVDDPRDREAVSLVCRRWHRIDALTRKHVTVPFCYAASPAHLLARF 79
Query: 66 SNIRSVTLKGK 76
+ S+ +KGK
Sbjct: 80 PRLESLAVKGK 90
>gb|AAR82926.1| coronatine-insensitive 1 [Lycopersicon esculentum]
gi|40218003|gb|AAR82925.1| coronatine-insensitive 1
[Lycopersicon esculentum]
Length = 603
Score = 60.1 bits (144), Expect = 1e-08
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 1 NILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 60
N +S D V E V+ ++ +DR +VSLVCK W+ + +R+ + + CY+ PE
Sbjct: 5 NSTRLSSSTNDTVWECVIPYIQESRDRDAVSLVCKRWWQIDAITRKHITMALCYTAKPEQ 64
Query: 61 LTRRSSNIRSVTLKGK 76
L+RR ++ SV LKGK
Sbjct: 65 LSRRFPHLESVKLKGK 80
>gb|AAO38719.1| COI1 [Oryza sativa (japonica cultivar-group)]
gi|56784261|dbj|BAD81943.1| COI1 [Oryza sativa
(japonica cultivar-group)] gi|64175189|gb|AAY41186.1|
coronatine-insensitive 1 [Oryza sativa (japonica
cultivar-group)]
Length = 595
Score = 58.2 bits (139), Expect = 5e-08
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 3 LNQASPF----PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSP 58
LN+A F PDE L V+G V+ +DR + S VC+ W+ + +R+ V + CY+ P
Sbjct: 11 LNRALSFDDWVPDEALHLVMGHVEDPRDREAASRVCRRWHRIDALTRKHVTVAFCYAARP 70
Query: 59 EILTRRSSNIRSVTLKGK 76
L R + S++LKGK
Sbjct: 71 ARLRERFPRLESLSLKGK 88
>ref|NP_915536.1| P0529E05.15 [Oryza sativa (japonica cultivar-group)]
Length = 630
Score = 58.2 bits (139), Expect = 5e-08
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 3 LNQASPF----PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSP 58
LN+A F PDE L V+G V+ +DR + S VC+ W+ + +R+ V + CY+ P
Sbjct: 46 LNRALSFDDWVPDEALHLVMGHVEDPRDREAASRVCRRWHRIDALTRKHVTVAFCYAARP 105
Query: 59 EILTRRSSNIRSVTLKGK 76
L R + S++LKGK
Sbjct: 106 ARLRERFPRLESLSLKGK 123
>ref|NP_912552.1| Putative F-box containing protein TIR1 [Oryza sativa (japonica
cultivar-group)] gi|24756871|gb|AAN64135.1| Putative
F-box containing protein TIR1 [Oryza sativa (japonica
cultivar-group)]
Length = 603
Score = 57.0 bits (136), Expect = 1e-07
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 5 QASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 60
+ASP PD+VL+ VL V S +DR + SLVC+ W AE +R SV + N + SP
Sbjct: 19 RASPPPDQVLDNVLETVLQFLDSARDRCAASLVCRSWSRAESATRASVAVRNLLAASPAR 78
Query: 61 LTRRSSNIRSVTLKGK 76
+ RR R V LKG+
Sbjct: 79 VARRFPAARRVLLKGR 94
>ref|XP_493919.1| similar to Arabidopsis thaliana transport inhibitor response 1
(TIR1) (T48087) [Oryza sativa]
Length = 587
Score = 55.8 bits (133), Expect = 3e-07
Identities = 24/67 (35%), Positives = 36/67 (52%)
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIR 69
PDEV E + + DR + + C W AER SRR + + NCY+ +P R ++R
Sbjct: 21 PDEVWEHAFSFLPAAADRGAAAGACSSWLRAERRSRRRLAVANCYAAAPRDAVERFPSVR 80
Query: 70 SVTLKGK 76
+ +KGK
Sbjct: 81 AAEVKGK 87
>ref|NP_912346.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|29893584|gb|AAP06838.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 589
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/67 (38%), Positives = 38/67 (55%)
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIR 69
PD L V+G V+ DR ++SLVC+ W + SR+ V + YS +P+ L RR +
Sbjct: 19 PDVALGLVMGFVEDPWDRDAISLVCRHWCRVDALSRKHVTVAMAYSTTPDRLFRRFPCLE 78
Query: 70 SVTLKGK 76
S+ LK K
Sbjct: 79 SLKLKAK 85
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,149,804
Number of Sequences: 2540612
Number of extensions: 3473264
Number of successful extensions: 8845
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8798
Number of HSP's gapped (non-prelim): 60
length of query: 76
length of database: 863,360,394
effective HSP length: 52
effective length of query: 24
effective length of database: 731,248,570
effective search space: 17549965680
effective search space used: 17549965680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0104.7