BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.7
(411 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 164 6e-39
ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cu... 134 7e-30
emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa (japonica cultiva... 133 9e-30
emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa (japonica cultiva... 131 3e-29
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 130 6e-29
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 130 7e-29
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 130 7e-29
gb|AAP53044.1| putative retroelement [Oryza sativa (japonica cul... 130 1e-28
gb|AAP52162.1| putative retroelement [Oryza sativa (japonica cul... 130 1e-28
emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa (japonica cultivar... 130 1e-28
gb|AAM14672.1| Putative polyprotein [Oryza sativa (japonica cult... 130 1e-28
emb|CAD79705.1| hypothetical Gag-Pol polyprotein [Oryza sativa (... 129 1e-28
gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cul... 129 2e-28
gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cult... 129 2e-28
gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cult... 129 2e-28
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 129 2e-28
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 129 2e-28
ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultiv... 128 3e-28
emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa (japonica cultiva... 128 3e-28
gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (j... 128 3e-28
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 164 bits (414), Expect = 6e-39
Identities = 123/398 (30%), Positives = 183/398 (45%), Gaps = 54/398 (13%)
Query: 41 HGLDKFLKRSPPKFEGGYNPDGAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWW 100
+GL +F K PP F G NP A EW+ +E+ FE + C + K+ +A+Y+L S A WW
Sbjct: 69 NGLGEFQKLKPPTFSGTANPLEAEEWIVAMEKSFEAMGCTDKEKIIYATYMLQSSAFEWW 128
Query: 101 TSVRGRITPEEGELIWEIFKNSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEEL 160
+ + + E + WE+FK +F +KYFP K KE EF ELKQ SV EY +F L
Sbjct: 129 DAHK-KSYSERIFITWELFKEAFYKKYFPESVKRMKEKEFLELKQGNKSVAEYEIEFSRL 187
Query: 161 CQFHPRYSTANDETSKCVKFEYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEY 220
+F P + + SK +FE GLR ++ V ++ F +V K ++ E K Y
Sbjct: 188 ARFAPEF--VQTDGSKARRFESGLRQPLKRRVEAFELTIFREVVSKAQLLE------KGY 239
Query: 221 LKGLGVNKAPKKKEEKRKPYF*PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFC---- 276
+ + P+KK + PQ+QGR + N +G + P C
Sbjct: 240 HEQRIEHGQPQKKFKTNN----PQNQGRFR----GNYSGQMQRKSSENQGRKCPICQGSH 291
Query: 277 ---------GR---CRRNGHRAQECIVVLGGQSGVQTGGSGN-----PNPTTTVGGGSNR 319
GR C GH +C ++ G++ V + N P P+ + G S+
Sbjct: 292 VPSICPNCWGRCFECGEAGHTRYQCPLLQKGKNRVSSTTQPNTKVLTPVPSLYLPGPSSA 351
Query: 320 NANVP--------------PRDNRRVGHPANKGKVFAMTMEEASESPELIKGMCYVNGFP 365
N + P R N G N +V+ +T A ES ++ G + +P
Sbjct: 352 NNHGPNQGKPLANTNTTRGMRSNNSQG--GNHARVYNLTKSTAEESNTVVTGNVLICSYP 409
Query: 366 LKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTP 403
KVL+DSGATHSFIS V++ P + L + I TP
Sbjct: 410 GKVLFDSGATHSFISTNFVRKYTIPTSQLKERICIETP 447
>ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1572
Score = 134 bits (336), Expect = 7e-30
Identities = 111/439 (25%), Positives = 183/439 (41%), Gaps = 46/439 (10%)
Query: 3 MAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPDG 62
MA + L+ LT + A NN+ + L FL+ PP+F P
Sbjct: 103 MAVQTQILQGLTTAIASFQHNAHGNGHPHMGNNRSK----LTDFLRSRPPEFSQTVEPVE 158
Query: 63 AYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKNS 122
A +W+++++R + C K+ +AS+ L A WW + PE + W+ F +
Sbjct: 159 ADDWLKDVDRKLNLVQCTPVEKMLYASHQLRGPAADWWENYCNA-HPEPTNIAWDEFATA 217
Query: 123 FLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFEY 182
F + P K+ EF LKQ S+ EY ++F +L ++ P + + K KF
Sbjct: 218 FRAAHVPESTIDMKKEEFNRLKQGNSSINEYLSQFNKLARYAPE--EVDTDKKKIRKFLK 275
Query: 183 GLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLK-------GLGVNKAPKKK-- 233
G+ +R + F ++ K + E+ K E K G AP+ +
Sbjct: 276 GIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSFRGAPRPRYG 335
Query: 234 ----------EEKRKPYF*P---------QDQGRNQFGRTWNPTGGFGFQGRPGGFNNTP 274
+ R+P + P Q Q R G T P F+ G +
Sbjct: 336 QPMQYHQSVTQANRQPGYAPRPQINRPAPQPQQRAPSGNT-APNSVISFKSPQGP--SAV 392
Query: 275 FCGRCRRNGHRAQECIVVLGGQSGVQTGG---SGNPNPTTTVGGGSNRNANVPPRDNRRV 331
C RC + GH A++C Q+ T +G+ T T +R ++ R
Sbjct: 393 QCFRCNQMGHYARQC-----PQNPTNTNSGHANGSTARTPTPAAAQSRPSSQASGQGSRA 447
Query: 332 GHPANKGKVFAMTMEEASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPV 391
+ +G+V + E A ++P+++ GM VN P VL+DSGA+HSFIS VK+ G+
Sbjct: 448 SNNFGRGRVNHIQAETAQDAPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKT 507
Query: 392 TSLA*DLEISTPTKNTSRT 410
+L + + +P +N T
Sbjct: 508 QNLRVPMIVHSPGRNIRAT 526
>emb|CAE03652.2| OSJNBa0060N03.17 [Oryza sativa (japonica cultivar-group)]
gi|50928613|ref|XP_473834.1| OSJNBa0060N03.17 [Oryza
sativa (japonica cultivar-group)]
Length = 1634
Score = 133 bits (335), Expect = 9e-30
Identities = 122/415 (29%), Positives = 176/415 (42%), Gaps = 34/415 (8%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 258 ENPILAQVLAQQTQLMNMMMQQFQNQENQG--NNHAPPQNKLAEFLRVRPPVFSSTTNPV 315
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKN 121
A +W+ +E+ + L C + KV+FAS+ L A WW R T E +IW F
Sbjct: 316 EASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAE-PIIWLEFTA 374
Query: 122 SFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFE 181
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 375 AFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKFL 432
Query: 182 YGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF 241
GL ++ + +F LV K E+ K + +++KR+
Sbjct: 433 GGLNDELSYPLMVGDYPDFQKLVDKAIRQED---------------KYNRMEQKKRRIAQ 477
Query: 242 *PQDQGRNQ-----FGRTWNPTGGFGFQGRPGG-FNNTPFCGRCRRNGHRA------QEC 289
QG NQ G P GG RP F N R G R Q+
Sbjct: 478 FKTQQGNNQKPHLTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQGPRPVAAPAQQQP 537
Query: 290 IVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEAS 349
+ G V G+P R VP ++N V PA+K +V + EA
Sbjct: 538 VKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAV--PASKARVNHVAAAEAQ 595
Query: 350 ESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
++P++I G VN P VL+DSGATHSF+S V G V L L +STP+
Sbjct: 596 DAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPS 650
>emb|CAE02183.2| OSJNBa0080E14.14 [Oryza sativa (japonica cultivar-group)]
gi|50930001|ref|XP_474528.1| OSJNBa0080E14.14 [Oryza
sativa (japonica cultivar-group)]
Length = 806
Score = 131 bits (330), Expect = 3e-29
Identities = 118/413 (28%), Positives = 173/413 (41%), Gaps = 30/413 (7%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 18 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNHVPPQNKLAEFLRVRPPVFSSTTNPV 75
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELIWEIFK 120
A +W+ +E+ + L C + KV+FAS+ L A WW R RIT E + W F
Sbjct: 76 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLQGPASEWWDHFRLNRITAEP--ITWLEFT 133
Query: 121 NSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKF 180
+F + + P+ K+ EF L Q + SV EY +F L ++ P +E + KF
Sbjct: 134 AAFQKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQE--KF 191
Query: 181 EYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPY 240
GL ++ + +F LV K E+ ++ + + K + +K +
Sbjct: 192 LEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKPRLT 251
Query: 241 F*PQDQGRNQFGRTWNPTGGFGFQGRPGG--FNNTPFCGRCRRN-------GHRAQECIV 291
PQ P GG F RP FNN G RN Q+
Sbjct: 252 LRPQSM----------PHGGSSFVVRPQRQFFNNN--AGNNIRNQAPRPVAAPTQQQPAK 299
Query: 292 VLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASES 351
G V G+P R VP + N V PA+K +V + EA ++
Sbjct: 300 REQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTV--PASKARVNHVAAAEAQDA 357
Query: 352 PELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
P++I G VN P VL+DSGATHSF+S G V L L +STP+
Sbjct: 358 PDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 410
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza
sativa (japonica cultivar-group)]
gi|57834090|emb|CAE04759.2| OSJNBb0060E08.22 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 130 bits (328), Expect = 6e-29
Identities = 110/433 (25%), Positives = 174/433 (39%), Gaps = 34/433 (7%)
Query: 3 MAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPDG 62
MA + L+ LT + A NN+ + L FL+ PP+F P
Sbjct: 382 MAVQTQILQGLTTAIASFQHNAHGNGHPHVGNNRSK----LTDFLRSRPPEFSQTIEPVE 437
Query: 63 AYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKNS 122
A +W+++++R + C K +AS+ L A WW + PE + W+ F +
Sbjct: 438 ADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNA-HPEPTNIAWDEFATA 496
Query: 123 FLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFEY 182
F + P K+ EF LKQ SV EY ++F +L ++ P + + K KF
Sbjct: 497 FRVAHVPESTIDMKKEEFNRLKQGHSSVNEYLSQFNKLARYAPE--EVDTDKKKIRKFLK 554
Query: 183 GLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLK-------GLGVNKAPKKKEE 235
G+ +R + F ++ K + E+ K E K G AP+ +
Sbjct: 555 GIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSSRGAPRPRYG 614
Query: 236 KRKPYF*PQDQG--------RNQFGRTWNPTGGFGFQGRPGGFNNTPF----------CG 277
+ Y Q R Q R P G + T F C
Sbjct: 615 QPMQYHQSVTQANRQSSYAPRPQMNRPAPPPQQRAPSGNTAPNSVTSFKSPQGPSAVQCF 674
Query: 278 RCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANK 337
RC + GH A++C S GS PT +R ++ R + +
Sbjct: 675 RCNQMGHYARQCPQNPTNTSPGHANGSTARTPTPAAA--QSRPSSQASGQGSRASNHFGR 732
Query: 338 GKVFAMTMEEASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*D 397
G+V + E A ++P+++ GM VN P VL+DSGA+HSFIS VK+ G+ +L
Sbjct: 733 GRVNHIQAETAQDAPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVP 792
Query: 398 LEISTPTKNTSRT 410
+ + +P +N T
Sbjct: 793 MIVHSPGRNIRAT 805
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 130 bits (327), Expect = 7e-29
Identities = 106/371 (28%), Positives = 161/371 (42%), Gaps = 35/371 (9%)
Query: 43 LDKFLKRSPPKFEGGY-NPDGAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWT 101
L F K +P F+G +P A W+ LE IF + C E +KV A ++L+ WW
Sbjct: 60 LRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWE 119
Query: 102 SVRGRITPEEGELIWEIFKNSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELC 161
+ + + ++ W+ FK SF K+F A + K EF L+Q M+V +Y A+F+ L
Sbjct: 120 TTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLS 179
Query: 162 QFHPRYSTANDETSKCVKFEYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYL 221
+F P E ++ KF GLR DI+ +V + A ++ E+
Sbjct: 180 RFAPEMIAT--EAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKT 237
Query: 222 KGLGVNKAPKKKEEKRKPYF*PQDQGRNQFGRTWNPTGGF-GFQGRP----GGFNNTPFC 276
G G K+K E ++P PQ R + P G F FQ +P P C
Sbjct: 238 AGRGSTSGQKRKAE-QQPVPVPQ--------RNFRPGGEFRSFQQKPFEAGEAARGKPLC 288
Query: 277 GRCRRNGHRAQECIVVLGGQSGV---QTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGH 333
C + H C+ G ++ Q G + + P G N+ A P
Sbjct: 289 TTCGK--HHLGRCL--FGTRTCFKCRQEGHTADRCPLRVTGIAQNQGAGAP--------- 335
Query: 334 PANKGKVFAMTMEEASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTS 393
++G+ FA EA ++ ++ G V G VL+DSG++HSFIS V V
Sbjct: 336 --HQGRAFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVSHARLEVEP 393
Query: 394 LA*DLEISTPT 404
L L +STP+
Sbjct: 394 LHHVLSVSTPS 404
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 130 bits (327), Expect = 7e-29
Identities = 84/250 (33%), Positives = 134/250 (53%), Gaps = 11/250 (4%)
Query: 1 EEMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNP 60
E M MA ++ TA T Q + ++G AA ++ GL F + +PPKF+G
Sbjct: 20 EAMNNMAASVAAQTAAKT-QRDLEKRGREIRAAESR-----GLVDFRRYNPPKFKGDEGS 73
Query: 61 DGAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFK 120
+ A +W++E+E+IF+ + C KV++A+Y+L +A WW S R + E+ WE FK
Sbjct: 74 EKADQWIQEVEKIFDMINCQAGVKVSYATYMLLGDAEYWWRSARLLMGAAHEEVNWESFK 133
Query: 121 NSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKF 180
FL+KYFP + + +F +L Q +++VGEYAAKFE L + + DE C +F
Sbjct: 134 RKFLDKYFPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESLSRHFRFFREEIDEPFMCHRF 193
Query: 181 EYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGL---GVNKAPKKKEEKR 237
+ GL+ +I+ V I+ F LV+KCR E+ + + G ++A + K+
Sbjct: 194 QDGLKYEIQDSVLPLGIQRFQALVEKCREVEDMKNKRASRVGNFNSGGPSRATYQNRGKQ 253
Query: 238 --KPYF*PQD 245
KPY PQ+
Sbjct: 254 VAKPYNRPQN 263
>gb|AAP53044.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532910|ref|NP_920757.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1094
Score = 130 bits (326), Expect = 1e-28
Identities = 116/410 (28%), Positives = 175/410 (42%), Gaps = 24/410 (5%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 21 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNHAPPQNKLAEFLRVRPPIFSSTTNPV 78
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELIWEIFK 120
A +W+ +E+ + L C + KV+FAS+ L A WW R RIT E + W F
Sbjct: 79 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEP--ITWLEFT 136
Query: 121 NSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKF 180
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 137 AAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKF 194
Query: 181 EYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPY 240
GL ++ + +F LV K E+ ++ + + KA + +K +
Sbjct: 195 LEGLNDELSYPLMTGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGSNQKPRLT 254
Query: 241 F*PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNT------PFCGRCRRNGHRAQECIVVLG 294
PQ P F F G NNT P ++ + ++
Sbjct: 255 LGPQSVPHGGSSSVVRPQRQF-FNNNAG--NNTRNQAPRPVAAPTQQQPAKREQ------ 305
Query: 295 GQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPEL 354
G V G+P R VP ++N V PA+K +V + EA ++P++
Sbjct: 306 GSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSTV--PASKARVNHVAAAEAQDAPDV 363
Query: 355 IKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
I G VN P VL+DSGATHSF+S G V L L +STP+
Sbjct: 364 ILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 413
>gb|AAP52162.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531146|ref|NP_919875.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22725913|gb|AAN04923.1| Putative retroelement [Oryza
sativa]
Length = 1729
Score = 130 bits (326), Expect = 1e-28
Identities = 113/403 (28%), Positives = 169/403 (41%), Gaps = 40/403 (9%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 410 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNHAPPQNKLAEFLRVRPPVFSSTTNPV 467
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKN 121
A +W+ +E+ + L C + KV+FAS+ L A WW R T E + W F
Sbjct: 468 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAE-PITWLEFTA 526
Query: 122 SFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFE 181
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 527 AFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKFL 584
Query: 182 YGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF 241
GL ++ + +F LV K E+ ++ + + KA + +K +
Sbjct: 585 EGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGSSQKPRLTL 644
Query: 242 *PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQT 301
PQ + G + QG + C C GH A +C
Sbjct: 645 GPQSMPQ---GASTQQQPAKREQG-----SKPMVCFNCGDPGHYADKC------------ 684
Query: 302 GGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKGMCYV 361
P P R VP + N V PA+K +V + EA ++P++I G V
Sbjct: 685 -----PKP--------RRVKVVPAQSNSAV--PASKARVNHVAAAEAQDAPDVILGTFLV 729
Query: 362 NGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
N P VL+DSGATHSF+S G V L L +STP+
Sbjct: 730 NSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 772
>emb|CAE05578.3| OSJNBa0032N05.6 [Oryza sativa (japonica cultivar-group)]
Length = 1528
Score = 130 bits (326), Expect = 1e-28
Identities = 109/405 (26%), Positives = 168/405 (40%), Gaps = 16/405 (3%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 141 ENPTLAQVLAQQTQLMNMMMQQFQNQQNQG--NNHAPPQNKLAEFLRVRPPVFSSTTNPV 198
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKN 121
A +W+ +E+ + L C + KV+FASY L A WW R T E + W F
Sbjct: 199 EAGDWLHAIEKKLDLLQCTDQEKVSFASYQLHGPASEWWDHFRLNRTTAE-PITWLEFTA 257
Query: 122 SFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFE 181
+F + + P+ K+ EF L Q + SV EY +F L ++ P ++E + KF
Sbjct: 258 AFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRTDEERQE--KFL 315
Query: 182 YGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF 241
GL ++ + +F LV K E+ ++ + + KA + +K +
Sbjct: 316 EGLNDELSYPLMTGDYSDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGSNQKPRLAL 375
Query: 242 *PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNT---PFCGRCRRNGHRAQECIVVLGGQSG 298
PQ + P F N P ++ + ++ G
Sbjct: 376 GPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPAQQQPAKREQ------GSKP 429
Query: 299 VQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKGM 358
V G+P R VP + N V PA+K +V + EA ++P++I G
Sbjct: 430 VVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTV--PASKARVNHVAAAEAQDAPDMILGT 487
Query: 359 CYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTP 403
VN P VL+DSGATHSF+S G V L L +STP
Sbjct: 488 FPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTP 532
>gb|AAM14672.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1342
Score = 130 bits (326), Expect = 1e-28
Identities = 113/403 (28%), Positives = 169/403 (41%), Gaps = 40/403 (9%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 23 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNHAPPQNKLAEFLRVRPPVFSSTTNPV 80
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKN 121
A +W+ +E+ + L C + KV+FAS+ L A WW R T E + W F
Sbjct: 81 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAE-PITWLEFTA 139
Query: 122 SFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFE 181
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 140 AFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKFL 197
Query: 182 YGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF 241
GL ++ + +F LV K E+ ++ + + KA + +K +
Sbjct: 198 EGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFKAQQGSSQKPRLTL 257
Query: 242 *PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQT 301
PQ + G + QG + C C GH A +C
Sbjct: 258 GPQSMPQ---GASTQQQPAKREQG-----SKPMVCFNCGDPGHYADKC------------ 297
Query: 302 GGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKGMCYV 361
P P R VP + N V PA+K +V + EA ++P++I G V
Sbjct: 298 -----PKP--------RRVKVVPAQSNSAV--PASKARVNHVAAAEAQDAPDVILGTFLV 342
Query: 362 NGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
N P VL+DSGATHSF+S G V L L +STP+
Sbjct: 343 NSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 385
>emb|CAD79705.1| hypothetical Gag-Pol polyprotein [Oryza sativa (indica
cultivar-group)]
Length = 1820
Score = 129 bits (325), Expect = 1e-28
Identities = 110/439 (25%), Positives = 181/439 (41%), Gaps = 46/439 (10%)
Query: 3 MAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPDG 62
MA + L+ LT + A NN+ + L FL+ PP+F P
Sbjct: 382 MAVQTQILQGLTTAIASFQHNAHGNGHPHVGNNRSK----LTDFLRSRPPEFSQTVEPVE 437
Query: 63 AYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKNS 122
A +W+++++R + C K +AS+ L A WW + PE + W+ F +
Sbjct: 438 ADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNA-HPEPTNIAWDEFATA 496
Query: 123 FLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFEY 182
F + P K+ EF LKQ + EY ++F +L ++ P N + K +F
Sbjct: 497 FRAAHVPESTIDMKKEEFNRLKQGNSNDNEYLSQFNKLARYAPE--EVNTDKKKIRRFLK 554
Query: 183 GLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLK-------GLGVNKAPKKK-- 233
G+ +R + F ++ K + E+ K E K G AP+ +
Sbjct: 555 GIAVGMRLQLLVHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSSRGAPRPRYG 614
Query: 234 ----------EEKRKPYF*P---------QDQGRNQFGRTWNPTGGFGFQGRPGGFNNTP 274
+ R+P + P Q Q R G T P F+ G +
Sbjct: 615 QPMQYHQSVTQANRQPGYAPRPQMNRPAPQPQQRAPSGNT-APNSVTSFKSPQGP--SVV 671
Query: 275 FCGRCRRNGHRAQECIVVLGGQSGVQTGG---SGNPNPTTTVGGGSNRNANVPPRDNRRV 331
C RC + GH A++C Q+ T +G+ T T +R ++ R
Sbjct: 672 QCFRCNQMGHYARQC-----PQNPTNTNSGHANGSTARTPTPAAAQSRPSSQASGQGSRA 726
Query: 332 GHPANKGKVFAMTMEEASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPV 391
+ +G+V + E A ++P+++ GM VN P VL+DSGA+HSFIS VK+ G+
Sbjct: 727 SNNFGRGRVNHIQAETAQDAPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKT 786
Query: 392 TSLA*DLEISTPTKNTSRT 410
+L + + +P +N T
Sbjct: 787 QNLRVPMIVHSPGRNIRAT 805
>gb|AAP53043.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532908|ref|NP_920756.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1679
Score = 129 bits (324), Expect = 2e-28
Identities = 120/411 (29%), Positives = 174/411 (42%), Gaps = 56/411 (13%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 21 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNYAPPQNKLAEFLRVRPPIFSSTTNPV 78
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELIWEIFK 120
A +W+ +E+ + L C + KV+FAS+ L A WW R RIT E + W F
Sbjct: 79 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEP--ITWLEFT 136
Query: 121 NSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKF 180
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 137 AAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKF 194
Query: 181 EYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPY 240
GL ++ + +F LV K E+ K + +++KR+
Sbjct: 195 LEGLNDELSYPLMTGDYPDFQKLVDKAIRQED---------------KYNRMEQKKRRIA 239
Query: 241 F*PQDQGRNQFGR-TWNPTG---GFGFQGRPGGF---NNTPFCGRCRRNGHRAQECIVVL 293
QG NQ R T P G Q +P + C C GH A +C
Sbjct: 240 HFKAQQGSNQKPRLTLGPQSVPHGAPTQQQPAKREQGSKPVVCFNCGDPGHYADKC---- 295
Query: 294 GGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPE 353
P P R VP ++N V PA+K +V + EA ++P+
Sbjct: 296 -------------PKP--------RRVKVVPAQNNSTV--PASKARVNHVAAAEAQDAPD 332
Query: 354 LIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
+I G VN P VL+DSGATHSF+S G V L L +STP+
Sbjct: 333 VILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 383
>gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531192|ref|NP_919898.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177640|gb|AAM14695.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1680
Score = 129 bits (324), Expect = 2e-28
Identities = 124/417 (29%), Positives = 178/417 (41%), Gaps = 38/417 (9%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 228 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNHAPPQNKLAEFLRVRPPVFSSTTNPV 285
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKN 121
A +W+ +E+ + L C + KV+FAS+ L A WW R T E + W F
Sbjct: 286 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAE-PITWLEFTA 344
Query: 122 SFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFE 181
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 345 AFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKFL 402
Query: 182 YGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF 241
GL ++ + + +F LV K I +E++ N+ +KK +R +F
Sbjct: 403 EGLNDELSYPLMTEDYSDFQKLVDKA-IHQEDK-----------YNRMEQKK--RRIAHF 448
Query: 242 *PQDQGRNQ-----FGRTWNPTGGFGFQGRPGG--FNNTPFCGRCRRN-------GHRAQ 287
Q QG NQ G P GG RP FNN G RN Q
Sbjct: 449 KAQ-QGNNQKPRLTLGPQSMPHGGSSSVVRPQHQFFNNN--AGNNIRNQAPRPVAASTQQ 505
Query: 288 ECIVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEE 347
+ G V G+P VP + N V PA+K +V + E
Sbjct: 506 QPAKREQGSKPVVCFNCGDPGHYADKCPKPRHVKVVPAQSNSAV--PASKARVNHVAAAE 563
Query: 348 ASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
A ++P++I G VN P VL+DSGATHSF+S G V L L +STP+
Sbjct: 564 AQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPS 620
>gb|AAV59415.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50931465|ref|XP_475260.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46391139|gb|AAS90666.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1649
Score = 129 bits (324), Expect = 2e-28
Identities = 110/439 (25%), Positives = 181/439 (41%), Gaps = 46/439 (10%)
Query: 3 MAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPDG 62
MA + L+ LT + A NN+ + L FL+ PP+F P
Sbjct: 250 MAVQTQILQGLTTAIASFQHNAHGNGHPHMGNNRSK----LTDFLRSRPPEFSQTVEPVE 305
Query: 63 AYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKNS 122
A +W+++++R + C K +AS+ L A WW + PE + W+ F +
Sbjct: 306 ADDWLKDVDRKLNLVQCTPVEKTLYASHQLRGPAADWWENYCNA-HPEPTNIAWDEFATA 364
Query: 123 FLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFEY 182
F + P K+ EF LKQ SV EY ++F +L ++ P + + K KF
Sbjct: 365 FRAAHVPESTIDMKKEEFNRLKQGNSSVNEYLSQFNKLARYAPE--EVDTDKKKIRKFLK 422
Query: 183 GLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLK-------GLGVNKAPKKK-- 233
G+ +R + F ++ K + E+ K E K G AP+ +
Sbjct: 423 GIAVGMRLQLLAHDFPTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSSRGAPRPRYG 482
Query: 234 ----------EEKRKPYF*P---------QDQGRNQFGRTWNPTGGFGFQGRPGGFNNTP 274
+ R+P + P Q Q R T P F+ G +
Sbjct: 483 QPMQYHQSVTQANRQPGYAPRPQINRPAPQPQQRAPSSDT-APNSVTSFKSPQGP--SAV 539
Query: 275 FCGRCRRNGHRAQECIVVLGGQSGVQTGG---SGNPNPTTTVGGGSNRNANVPPRDNRRV 331
C RC + GH A++C Q+ T +G+ T T+ +R ++ R
Sbjct: 540 QCFRCNQMGHYARQC-----PQNPTNTNSGHANGSTARTPTLAAAQSRPSSQASGQGSRA 594
Query: 332 GHPANKGKVFAMTMEEASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPV 391
+ +G+V + E ++P+++ GM VN P VL+DSGA+HSFIS VK+ G+
Sbjct: 595 SNNFGRGRVNHIQAETTQDAPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKT 654
Query: 392 TSLA*DLEISTPTKNTSRT 410
+L + + +P +N T
Sbjct: 655 QNLRVPMIVHSPGRNIRAT 673
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 129 bits (323), Expect = 2e-28
Identities = 125/417 (29%), Positives = 174/417 (40%), Gaps = 44/417 (10%)
Query: 10 LEQLTAFLTEQAERARQGAGQGAANNQEEI-----YHGLDKFLKRSPPKFEGGYNPDGAY 64
L Q+ A T+ Q A ANNQ + + L FL+ PP F NP A
Sbjct: 25 LAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAG 84
Query: 65 EWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELIWEIFKNSF 123
+W+ +E+ + + C E KV+FAS+ L A WW R GR E + W+ F +F
Sbjct: 85 DWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGGEP--ITWQEFTAAF 142
Query: 124 LEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFEYG 183
+ + P+ K+ EF L Q + SV EY F L ++ P ++E + KF G
Sbjct: 143 KKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQE--KFLEG 200
Query: 184 LRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF*P 243
L ++ + R+F LV K I +E++ N+ +KK +R F
Sbjct: 201 LNDELSYALMATDFRDFQQLVDKA-IRQEDK-----------YNRIEQKK--RRAAQFKA 246
Query: 244 QDQGRNQFGRTWN-------PTGGFGFQGRPGGF---NNTPFCGRCRRNGHRAQECIVVL 293
Q QG NQ R P GG RP NNT G RN V
Sbjct: 247 Q-QGSNQRPRLITGPQAPSYPQGGSSSVARPQRQFYNNNTSNRGNDNRNMVACPAATPVQ 305
Query: 294 G-------GQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTME 346
G V G+P R N P +N V PA K +V +
Sbjct: 306 NQPVRKEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPVPNNPNV--PAPKARVNHVAAA 363
Query: 347 EASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTP 403
EA +P+++ G VN P VL+DSGATHSF+S + G V SL L ++TP
Sbjct: 364 EAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTP 420
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 129 bits (323), Expect = 2e-28
Identities = 117/398 (29%), Positives = 169/398 (42%), Gaps = 17/398 (4%)
Query: 12 QLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPDGAYEWVRELE 71
QL L +QA+ +QG Q N + L FL+ PP F NP A +W+ +E
Sbjct: 34 QLINLLVQQAQN-QQGNNQNQ-NPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVE 91
Query: 72 RIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELI-WEIFKNSFLEKYFP 129
+ + + C E KV+FAS+ L A WW R GR EGE I W+ F +F + + P
Sbjct: 92 KKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA---EGEPITWQEFTAAFKKTHIP 148
Query: 130 ADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFEYGLRPDIR 189
K+ EF L Q + SV EY F L + P ++E + KF GL ++
Sbjct: 149 TGVVALKKREFRALNQGSRSVTEYLHDFNRLAHYAPEDVRTDEERQE--KFLEGLNDELS 206
Query: 190 TVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF*PQDQGRN 249
+ R+F LV K E+ ++ + KA + ++ + PQD
Sbjct: 207 YALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLITGPQDPSYP 266
Query: 250 QFGRTW--NPTGGFGFQGRPG--GFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQTGGSG 305
Q G + P F + G G +N R + Q G + GV G
Sbjct: 267 QGGSSSVVRPQRQF-YNNNTGNRGNDNRNMVARPAATPAQNQPVRKEQGSKPGV-CFNCG 324
Query: 306 NPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKGMCYVNGFP 365
+P R N P +N PA K +V + EA +P+++ G VN P
Sbjct: 325 DPGHYADKCPKPRRVKNAPAPNNSNA--PAPKARVNHVAAAEAQNAPDVVLGTFPVNSIP 382
Query: 366 LKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTP 403
VL+DSGATHSF+S G V SL L ++TP
Sbjct: 383 ASVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTP 420
>ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultivar-group)]
gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza
sativa (japonica cultivar-group)]
Length = 963
Score = 128 bits (322), Expect = 3e-28
Identities = 121/435 (27%), Positives = 176/435 (39%), Gaps = 66/435 (15%)
Query: 1 EEMAAMARALEQLTAFLTEQAERAR-QGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYN 59
EE +A+ L Q T + ++A+ Q A N + L FL+ SPP F N
Sbjct: 184 EENPTLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNKLADFLRVSPPTFSSTTN 243
Query: 60 PDGAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELIWEI 118
P A +W+ +E+ + + C E KV+FAS+ L A WW R GR E + W+
Sbjct: 244 PVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAGGEP--ITWQE 301
Query: 119 FKNSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCV 178
F +F + + P K+ EF L Q + SV EY F L ++ P ++E +
Sbjct: 302 FTTAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQE-- 359
Query: 179 KFEYGLRPDIRTVVGHDQIRNFATLVKKC-------RIFEENEKT*KEYLKGLGVNKAPK 231
KF GL ++ + R+F LV K E+ ++ ++ G N+ P+
Sbjct: 360 KFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKSQQGSNQRPR 419
Query: 232 KKEEKRKPYF*PQD------QGRNQFGRTWNPTGGFGFQGR-----PGG--FNNTP---- 274
+ P + PQ + + QF N TG G R P N P
Sbjct: 420 LVTGPQVPSY-PQGGSSSVVRPQRQFYN--NNTGNRGNDNRSVVARPAATPVQNQPVRKE 476
Query: 275 ------FCGRCRRNGHRAQECIVVLGGQSGVQTGGSGNPNPTTTVGGGSNRNANVPPRDN 328
C C GH A +C P P R N P +N
Sbjct: 477 QGSKPVICFNCGDPGHYADKC-----------------PKP--------RRVKNAPAPNN 511
Query: 329 RRVGHPANKGKVFAMTMEEASESPELIKGMCYVNGFPLKVLYDSGATHSFISHERVKQLG 388
PA K +V + EA +P+++ G VN P VL+DSGATHSF+S G
Sbjct: 512 SSA--PAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHG 569
Query: 389 FPVTSLA*DLEISTP 403
V SL L ++TP
Sbjct: 570 IEVISLGRPLLVNTP 584
>emb|CAE05583.1| OSJNBa0032N05.11 [Oryza sativa (japonica cultivar-group)]
Length = 1412
Score = 128 bits (322), Expect = 3e-28
Identities = 111/407 (27%), Positives = 171/407 (41%), Gaps = 18/407 (4%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 21 ENPTLAQVLAQQTQLMNMMMQQFQNQQNQG--NNHAPPQNKLAEFLRVRPPVFSSTTNPV 78
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVR-GRITPEEGELIWEIFK 120
A +W+ +E+ + L C + KV+FAS+ L A WW R RIT E + W F
Sbjct: 79 EASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRITAEP--ITWLEFT 136
Query: 121 NSFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKF 180
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 137 AAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKF 194
Query: 181 EYGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPY 240
GL ++ + +F LV K E+ ++ + + K + +K +
Sbjct: 195 LGGLNDELSYPLMVGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQQGNNQKPRLT 254
Query: 241 F*PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNT---PFCGRCRRNGHRAQECIVVLGGQS 297
PQ + P F N P ++ + ++ G
Sbjct: 255 LGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPAQQQPAKREQ------GNK 308
Query: 298 GVQTGGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKG 357
V G+P R VP ++N V PA+K +V + EA ++P++I G
Sbjct: 309 PVVCFNCGDPGHYADKCPKPRRVKVVPVQNNSAV--PASKARVNHVAAAEAQDAPDVILG 366
Query: 358 MCYVNGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
VN P VL+DSGATHSF+S G V L L +STP+
Sbjct: 367 TFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 413
>gb|AAT81665.1| putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 2784
Score = 128 bits (322), Expect = 3e-28
Identities = 113/403 (28%), Positives = 166/403 (41%), Gaps = 40/403 (9%)
Query: 2 EMAAMARALEQLTAFLTEQAERARQGAGQGAANNQEEIYHGLDKFLKRSPPKFEGGYNPD 61
E +A+ L Q T + ++ + QG NN + L +FL+ PP F NP
Sbjct: 1039 ENPTLAQVLAQQTQLMNMMMQQLQNQQNQG--NNHAPPQNKLAEFLRVRPPTFSSTANPV 1096
Query: 62 GAYEWVRELERIFETLVCAEPRKVAFASYLLSSEARTWWTSVRGRITPEEGELIWEIFKN 121
A +W+ +E+ + L C + KV+FAS+ L A WW R T E + W F
Sbjct: 1097 EAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAE-PITWLEFTA 1155
Query: 122 SFLEKYFPADAKCRKEMEFFELKQEAMSVGEYAAKFEELCQFHPRYSTANDETSKCVKFE 181
+F + + P+ K+ EF L Q + SV EY +F L ++ P NDE + KF
Sbjct: 1156 AFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPE-DVRNDEERQ-EKFL 1213
Query: 182 YGLRPDIRTVVGHDQIRNFATLVKKCRIFEENEKT*KEYLKGLGVNKAPKKKEEKRKPYF 241
GL ++ + +F LV K E+ K + +++KR+
Sbjct: 1214 EGLNDELSYPLMTGDYHDFQKLVDKAIRQED---------------KYNRMEQKKRRIAQ 1258
Query: 242 *PQDQGRNQFGRTWNPTGGFGFQGRPGGFNNTPFCGRCRRNGHRAQECIVVLGGQSGVQT 301
QG NQ P G Q P G P + + ++ + G G
Sbjct: 1259 FKTQQGNNQ-----KPRLTLGPQSMPQG---APAQQQPAKREQSSKPVVCFNYGDPGHYA 1310
Query: 302 GGSGNPNPTTTVGGGSNRNANVPPRDNRRVGHPANKGKVFAMTMEEASESPELIKGMCYV 361
P V SN A PA+K +V + EA ++P++I G V
Sbjct: 1311 DKCPKPRRVKVVPTQSNSTA------------PASKARVNHVAAAEAQDAPDVILGTFLV 1358
Query: 362 NGFPLKVLYDSGATHSFISHERVKQLGFPVTSLA*DLEISTPT 404
N P VLYDSGATHSF+S G V L L +STP+
Sbjct: 1359 NSVPATVLYDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPS 1401
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 772,289,981
Number of Sequences: 2540612
Number of extensions: 37172642
Number of successful extensions: 98638
Number of sequences better than 10.0: 702
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 96880
Number of HSP's gapped (non-prelim): 1082
length of query: 411
length of database: 863,360,394
effective HSP length: 130
effective length of query: 281
effective length of database: 533,080,834
effective search space: 149795714354
effective search space used: 149795714354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0103.7