BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0103.4
(378 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD92747.1| EBNA-2 co-activator variant [Homo sapiens] 43 0.018
ref|NP_796228.1| hypothetical protein LOC320756 [Mus musculus] g... 41 0.052
dbj|BAC28582.1| unnamed protein product [Mus musculus] 41 0.052
ref|YP_001217.1| alginate o-acetyltransferase [Leptospira interr... 40 0.089
ref|NP_712952.1| alginate O-acetylation protein [Leptospira inte... 40 0.089
ref|NP_248288.1| hypothetical protein MJ1289 [Methanocaldococcus... 40 0.089
dbj|BAA00447.1| open reading frame (251 AA) [Mus musculus] 40 0.12
dbj|BAC86958.1| unnamed protein product [Homo sapiens] 40 0.15
ref|XP_518209.1| PREDICTED: similar to tubulin, beta 2 [Pan trog... 39 0.26
ref|NP_727938.1| CG32577-PA [Drosophila melanogaster] gi|2283233... 39 0.26
ref|XP_533650.1| PREDICTED: similar to hypothetical protein [Can... 38 0.44
ref|XP_525511.1| PREDICTED: similar to gastric mucin [Pan troglo... 38 0.44
emb|CAB77038.1| regulatory protein [Xanthomonas campestris] 38 0.44
ref|NP_637212.1| regulatory protein [Xanthomonas campestris pv. ... 38 0.44
dbj|BAA00448.1| open reading frame (196 AA) [Mus musculus] 38 0.58
ref|NP_344124.1| Cytochrome b558/566, subunit A (cbsA) [Sulfolob... 37 0.75
ref|YP_142414.1| unknown [Acanthamoeba polyphaga mimivirus] gi|5... 37 0.75
emb|CAA92346.1| Nim2p [Saccharomyces cerevisiae] gi|6320413|ref|... 37 0.99
emb|CAB02707.1| Hypothetical protein C01G10.5 [Caenorhabditis el... 37 0.99
emb|CAC11683.1| hypothetical membrane protein [Thermoplasma acid... 37 0.99
>dbj|BAD92747.1| EBNA-2 co-activator variant [Homo sapiens]
Length = 964
Score = 42.7 bits (99), Expect = 0.018
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 237 SRLGSNPMNKLDS-PPKTDSIITPNTRLKIHVPPRPHPALASPSLASSTLADPRSG---- 291
S GS P +LDS P +TP R P P A ASP +ASS + SG
Sbjct: 16 SAAGSQPAPRLDSLSPTPTPTLTPPVR-----PAAPLVAFASPHMASSAQSGGSSGGPAV 70
Query: 292 PSVTQSILPTVPAMENCKIAMHRNP-----PKSQVNYTTILQGNL 331
P+V + I+ V + C I + P P+ Q+N + I GNL
Sbjct: 71 PTVQRGIIKMV--LSGCAIIVRGQPRGGPPPERQINLSNIRAGNL 113
>ref|NP_796228.1| hypothetical protein LOC320756 [Mus musculus]
gi|26332779|dbj|BAC30107.1| unnamed protein product [Mus
musculus]
Length = 158
Score = 41.2 bits (95), Expect = 0.052
Identities = 36/129 (27%), Positives = 65/129 (49%), Gaps = 11/129 (8%)
Query: 32 TVYLYTFGYSIYLRVQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGY--NIYLR 89
++YL + SIYL + Y+ + ++ Y +SIYL + ++YL F Y +YL
Sbjct: 24 SIYLSIY-LSIYLYLLYVCLFRYNLFLSIYHVSIYLSIYLSIYLSIYLSIFIYFMCVYLD 82
Query: 90 VQYFYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIPSGTVYLYTF 149
+ YFY ++ +SIYL + Y+ LY + +++L + ++ ++YL +
Sbjct: 83 IIYFY---RSIMCLSICLSIYLSI-YLSIYLHLLYVCLFRYNLFLSIYHV---SIYLSIY 135
Query: 150 GYSIYLRAS 158
SIYL S
Sbjct: 136 -LSIYLSIS 143
Score = 35.8 bits (81), Expect = 2.2
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 46 VQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQYFYIPSGTVYTFGY 105
+ Y+Y+ S +Y Y +SIYL + +Y+ F YN++L + Y
Sbjct: 13 LSYVYLSS--IYLSIY-LSIYLSIYLY---LLYVCLFRYNLFLSI--------------Y 52
Query: 106 SISIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIPSGTVYLYTFGYSIYLRASVSRFV 163
+SIYL + ++YL F Y + +YL + Y + L + SIYL +S ++
Sbjct: 53 HVSIYLSIYLSIYLSIYLSIFIYFMCVYLDIIYFYRSIMCL-SICLSIYLSIYLSIYL 109
>dbj|BAC28582.1| unnamed protein product [Mus musculus]
Length = 158
Score = 41.2 bits (95), Expect = 0.052
Identities = 36/129 (27%), Positives = 65/129 (49%), Gaps = 11/129 (8%)
Query: 32 TVYLYTFGYSIYLRVQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGY--NIYLR 89
++YL + SIYL + Y+ + ++ Y +SIYL + ++YL F Y +YL
Sbjct: 24 SIYLSIY-LSIYLYLLYVCLFRYNLFLSIYHVSIYLSIYLSIYLSIYLSIFIYFMCVYLD 82
Query: 90 VQYFYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIPSGTVYLYTF 149
+ YFY ++ +SIYL + Y+ LY + +++L + ++ ++YL +
Sbjct: 83 IIYFY---RSIMCLSICLSIYLSI-YLSIYLHLLYVCLFRYNLFLSIYHV---SIYLSIY 135
Query: 150 GYSIYLRAS 158
SIYL S
Sbjct: 136 -LSIYLSIS 143
Score = 37.0 bits (84), Expect = 0.99
Identities = 32/121 (26%), Positives = 57/121 (46%), Gaps = 21/121 (17%)
Query: 43 YLRVQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQYFYIPSGTVYT 102
++ + Y+Y+ S +Y Y +SIYL + +Y+ F YN++L +
Sbjct: 10 FIDLSYVYLSS--IYLSIY-LSIYLSIYLY---LLYVCLFRYNLFLSI------------ 51
Query: 103 FGYSISIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIPSGTVYLYTFGYSIYLRASVSRF 162
Y +SIYL + ++YL F Y + +YL + Y + L + SIYL +S +
Sbjct: 52 --YHVSIYLSIYLSIYLSIYLSIFIYFMCVYLDIIYFYRSIMCL-SICLSIYLSIYLSIY 108
Query: 163 V 163
+
Sbjct: 109 L 109
>ref|YP_001217.1| alginate o-acetyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600369|gb|AAS69854.1| alginate o-acetyltransferase
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 474
Score = 40.4 bits (93), Expect = 0.089
Identities = 35/149 (23%), Positives = 63/149 (41%), Gaps = 8/149 (5%)
Query: 6 QEVIKGDRTPFIINCLLSPNRHIPSGTVY--LYTFGYSIYLRVQ-YIYIPSGTVYTFGYS 62
++V GD F N ++ P +PSG ++ ++F + +Y Y G G+
Sbjct: 202 KKVFVGDHLLFFTNKVMEPGMSLPSGMIFWIAFSFAFQVYADFSGYTDGARGLAKMLGFK 261
Query: 63 ISIYLRVQYI---PSGTVYLYTFGYNIYLRVQYFYIPSGTVYTFGYSISIYLRVQYIPSG 119
+S+ +I PS + + +LR Y YIP G + ++ L + +I G
Sbjct: 262 LSLNFNFPFISSNPSEFWKRWHISLSTWLR-DYLYIPLGGNRISLFRQNVNLMIVWILGG 320
Query: 120 TVYLYTFGYSI-SIYLRVQYIPSGTVYLY 147
+ T+GY + Y +Q + V Y
Sbjct: 321 LWHGATYGYLVWGFYCGLQVVLYNIVQKY 349
>ref|NP_712952.1| alginate O-acetylation protein [Leptospira interrogans serovar Lai
str. 56601] gi|24196600|gb|AAN49970.1| alginate
O-acetylation protein [Leptospira interrogans serovar
lai str. 56601]
Length = 474
Score = 40.4 bits (93), Expect = 0.089
Identities = 35/149 (23%), Positives = 63/149 (41%), Gaps = 8/149 (5%)
Query: 6 QEVIKGDRTPFIINCLLSPNRHIPSGTVY--LYTFGYSIYLRVQ-YIYIPSGTVYTFGYS 62
++V GD F N ++ P +PSG ++ ++F + +Y Y G G+
Sbjct: 202 KKVFVGDHLLFFTNKVMEPGMFLPSGMIFWIAFSFAFQVYADFSGYTDGARGLAKMLGFK 261
Query: 63 ISIYLRVQYI---PSGTVYLYTFGYNIYLRVQYFYIPSGTVYTFGYSISIYLRVQYIPSG 119
+S+ +I PS + + +LR Y YIP G + ++ L + +I G
Sbjct: 262 LSLNFNFPFISSNPSEFWKRWHISLSTWLR-DYLYIPLGGNRISLFRQNVNLMIVWILGG 320
Query: 120 TVYLYTFGYSI-SIYLRVQYIPSGTVYLY 147
+ T+GY + Y +Q + V Y
Sbjct: 321 LWHGATYGYLVWGFYCGLQVVLYNIVQKY 349
>ref|NP_248288.1| hypothetical protein MJ1289 [Methanocaldococcus jannaschii DSM
2661] gi|1591926|gb|AAB99295.1| M. jannaschii predicted
coding region MJ1289 [Methanocaldococcus jannaschii DSM
2661] gi|2128767|pir||H64460 hypothetical protein MJ1289
- Methanococcus jannaschii
gi|24418749|sp|Q58685|YC89_METJA Hypothetical protein
MJ1289
Length = 165
Score = 40.4 bits (93), Expect = 0.089
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 25 NRHIPSGTVYLYTFGYSIYLRVQY-IYIPSGTVYTFGYSISIYL-RVQYIPSGTVYLYTF 82
N I +GT Y+ +F + + Y +Y+ GT+Y F Y+IS V YI + +Y F
Sbjct: 77 NVKISNGTKYV-SFNITTIEGIDYDVYLEKGTLYIFIYNISAQCPNVYYIKYTNLSIYEF 135
Query: 83 GYNIYL----RVQYFYIPSGTVYTF 103
G NI + +++FY+ + VY +
Sbjct: 136 GGNITINYSDNLRHFYVNNSKVYVY 160
Score = 36.6 bits (83), Expect = 1.3
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 72 IPSGTVYLYTFGYNIYLRVQY-FYIPSGTVYTFGYSISIYL-RVQYIPSGTVYLYTFGYS 129
I +GT Y+ +F + Y Y+ GT+Y F Y+IS V YI + +Y FG +
Sbjct: 80 ISNGTKYV-SFNITTIEGIDYDVYLEKGTLYIFIYNISAQCPNVYYIKYTNLSIYEFGGN 138
Query: 130 ISI----YLRVQYIPSGTVYLYT 148
I+I LR Y+ + VY+Y+
Sbjct: 139 ITINYSDNLRHFYVNNSKVYVYS 161
>dbj|BAA00447.1| open reading frame (251 AA) [Mus musculus]
Length = 250
Score = 40.0 bits (92), Expect = 0.12
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 32 TVYLYTFGY-SIYLRVQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFG-----YN 85
+VY+Y Y SIYL + Y+ ++Y Y +SIYL + ++YL +
Sbjct: 61 SVYIYLSIYLSIYLSIYLSYVCLSSIYLSIYHLSIYLSIYLSIYLSIYLSIMSDCLSIMS 120
Query: 86 IYLRVQYFYIPSGTVYTFGYSISIYLRVQ---YIPSGTVYLYTFGYSISIYLRV--QYIP 140
+ L + Y+ ++Y +S+YL + Y+ Y+ +SIYL + Y+
Sbjct: 121 VCLSICLSYV-CLSIYLSIICLSVYLSIYLCIYLSIYLSYVCLSSICLSIYLSIYLSYVC 179
Query: 141 SGTVYLYTFGYSIYL 155
++YL Y IYL
Sbjct: 180 LSSIYLSYAVYIIYL 194
Score = 38.1 bits (87), Expect = 0.44
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 48 YIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQYFYIPSGTVYTFGYSI 107
Y+ I ++ S+SIYL + + +Y +IYL + Y+ +
Sbjct: 7 YLSIYLSLSFSLSLSLSIYLSIICLS-----IYHLSISIYLSIYLSYV----------CL 51
Query: 108 SIYLRVQYIPSGTVYLYTFGYSISIYLRV--QYIPSGTVYLYTFGYSIYLRASVSRFVMI 165
SIYL + + +VY+Y Y +SIYL + Y+ ++YL + SIYL +S ++ I
Sbjct: 52 SIYLSIICL---SVYIYLSIY-LSIYLSIYLSYVCLSSIYLSIYHLSIYLSIYLSIYLSI 107
>dbj|BAC86958.1| unnamed protein product [Homo sapiens]
Length = 130
Score = 39.7 bits (91), Expect = 0.15
Identities = 40/126 (31%), Positives = 57/126 (44%), Gaps = 28/126 (22%)
Query: 33 VYLYTFGYSIYLRVQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQY 92
VY+Y F Y +IYI +Y + Y IYL + + +YLY F Y Y
Sbjct: 7 VYIYMFMYIFIFIYIFIYI---YIYVYVY---IYLYIYFYIFTYIYLYIFIYIYICLYIY 60
Query: 93 FYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGY-SISIYLRVQYIPSGTVYLYTFGY 151
YI +Y F Y I IYL + +YL+ F Y I +Y +++Y F Y
Sbjct: 61 LYI---YLYIFTY-IYIYLHI------FIYLHIFIYICICLY----------IFIYVFIY 100
Query: 152 -SIYLR 156
+IY+R
Sbjct: 101 INIYMR 106
>ref|XP_518209.1| PREDICTED: similar to tubulin, beta 2 [Pan troglodytes]
Length = 638
Score = 38.9 bits (89), Expect = 0.26
Identities = 44/131 (33%), Positives = 59/131 (44%), Gaps = 17/131 (12%)
Query: 36 YTFGYSIYLRVQY---IYIPSGTVYTFGYSISI---YLRVQYIPSGTVYLYTFGYNIYLR 89
Y+ YSI ++Y IP+ T Y+ GYSI Y IPS Y+ Y+I
Sbjct: 80 YSEAYSIPNSIEYSDGYSIPNSTEYSEGYSIPSSIEYSEGYSIPSSIE--YSDSYSIPNS 137
Query: 90 VQY---FYIPSGTVYTFGYSISI---YLRVQYIPSGTVYLYTFGYSISI-YLRVQYIPSG 142
++Y F IP+ Y+ GYSI Y IPS Y ++ SI Y IP+
Sbjct: 138 IEYSEGFSIPNSIEYSEGYSIPSSIEYSEGYSIPSSIEYSDSYSIPNSIEYSEGYSIPNS 197
Query: 143 TVYLYTFGYSI 153
Y+ GYSI
Sbjct: 198 IE--YSEGYSI 206
Score = 38.1 bits (87), Expect = 0.44
Identities = 36/114 (31%), Positives = 55/114 (47%), Gaps = 23/114 (20%)
Query: 36 YTFGYSIYLRVQY---IYIPSGTVYTFGYSI----------SIYLRVQY-----IPSGTV 77
Y+ GYSI ++Y IP+ Y+ GYSI SI ++Y IPS
Sbjct: 164 YSEGYSIPSSIEYSDSYSIPNSIEYSEGYSIPNSIEYSEGYSIPNSIEYSEGYSIPSSIE 223
Query: 78 YLYTFGYNIYLRVQY---FYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGY 128
Y + GY+I ++Y + IP+ Y+ GYSI + Q + S V L++F +
Sbjct: 224 Y--SEGYSIPNSIEYSEGYSIPNTIEYSEGYSIPNSIEGQILCSHGVVLFSFQF 275
>ref|NP_727938.1| CG32577-PA [Drosophila melanogaster] gi|22832337|gb|AAF48566.2|
CG32577-PA [Drosophila melanogaster]
Length = 1311
Score = 38.9 bits (89), Expect = 0.26
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 266 HVPPRPHPALASPS----LASSTLADPRSGPSVTQSILPTVPAMENCKIAMHRNPPKSQV 321
H P PHP A+ S LA+ P PS + S+L +PA N A
Sbjct: 15 HPQPHPHPRAAAASEVHRLAAGGSVSPPPPPSTSSSLLYHLPA--NTNAATAATVATVSA 72
Query: 322 NYTTILQGNLLVNQSNHLLPATNNYSQHYLLKPGKLPTAQAQIKQTRHS 370
+Y LQG+ Q+ H P + + HY LPT + +R S
Sbjct: 73 SYRHPLQGHER-QQNQHHHPYQHQHHHHYHQHHPHLPTGGGNVHLSRES 120
>ref|XP_533650.1| PREDICTED: similar to hypothetical protein [Canis familiaris]
Length = 912
Score = 38.1 bits (87), Expect = 0.44
Identities = 32/148 (21%), Positives = 55/148 (36%), Gaps = 31/148 (20%)
Query: 221 FGTGVRPPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASPSL 280
F T +PP +R S P SPP + S++ P T + R LA P+L
Sbjct: 209 FPTATQPPPQMR----TRTKSEPQRSPSSPPSSASVLRPTTAIHACSARRGRSVLARPAL 264
Query: 281 ASSTLA------------------------DPRSGPSVTQSILPTVPAMENCKIAMHRNP 316
+ P +GP + PT+P E+ + A + P
Sbjct: 265 GACARPAPGGPALSSVPRYLLFLFQPCVSWTPFTGPWLVVEPPPTIPVTESARSAAPQEP 324
Query: 317 PKSQVNYTT---ILQGNLLVNQSNHLLP 341
S++ ++ + G ++++S H P
Sbjct: 325 ISSRLRQSSARFVAGGEAIMSESGHSQP 352
>ref|XP_525511.1| PREDICTED: similar to gastric mucin [Pan troglodytes]
Length = 362
Score = 38.1 bits (87), Expect = 0.44
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 32 TVYLYTFGYSIYLRVQYIYIPSGTVYTFGYSISIYLRVQYIPS----GTVYLYTFGYNIY 87
TVYL S +Y+ + + G ++++YLRV PS TVYL +
Sbjct: 129 TVYLRVTSSSSTGITPVVYLRVSSSSSTGITLTVYLRVTSSPSTGITPTVYLRVTSSSST 188
Query: 88 LRVQYFYIPSGTVYTFGYSISIYLRVQYIPS----GTVYL-----YTFGYSISIYLRVQY 138
Y+ + + G ++++YLRV PS TVYL + G + +YLRV
Sbjct: 189 GITPVVYLRVSSSSSTGITLTVYLRVTSSPSTGITPTVYLRVTSSSSTGITPVVYLRVTS 248
Query: 139 IPS----GTVYL 146
PS TVYL
Sbjct: 249 SPSTGITPTVYL 260
>emb|CAB77038.1| regulatory protein [Xanthomonas campestris]
Length = 368
Score = 38.1 bits (87), Expect = 0.44
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 267 VPPRPHPALASPSLASSTLADPRSG--PSVTQSILPTVPAMENCKIAMHRNPPKSQVNYT 324
+PP P P + + LA++ D R G P++ Q++ T+PA E CK + + +N T
Sbjct: 204 LPPLPAPQVRAAKLAAAQAGDARLGTLPALYQALRATLPADEECK-GLDASDASEPLNVT 262
Query: 325 TILQGNLLVN 334
+ LLV+
Sbjct: 263 RLTNDKLLVS 272
>ref|NP_637212.1| regulatory protein [Xanthomonas campestris pv. campestris str. ATCC
33913] gi|21112949|gb|AAM41136.1| regulatory protein
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66768653|ref|YP_243415.1| regulatory protein rpfI
[Xanthomonas campestris pv. campestris str. 8004]
gi|66573985|gb|AAY49395.1| regulatory protein rpfI
[Xanthomonas campestris pv. campestris str. 8004]
Length = 342
Score = 38.1 bits (87), Expect = 0.44
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 267 VPPRPHPALASPSLASSTLADPRSG--PSVTQSILPTVPAMENCKIAMHRNPPKSQVNYT 324
+PP P P + + LA++ D R G P++ Q++ T+PA E CK + + +N T
Sbjct: 178 LPPLPAPQVRAAKLAAAQAGDARLGTLPALYQALRATLPADEECK-GLDASDASEPLNVT 236
Query: 325 TILQGNLLVN 334
+ LLV+
Sbjct: 237 RLTNDKLLVS 246
>dbj|BAA00448.1| open reading frame (196 AA) [Mus musculus]
Length = 196
Score = 37.7 bits (86), Expect = 0.58
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 41 SIYLRVQYIYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQYFYIPSGTV 100
SIYL + Y+ I + Y +SIYL + Y+ + +IYL Y+ +V
Sbjct: 17 SIYLSI-YLSIYLSIYHMSVYHLSIYLSIIYLSIYLSIYLSIYLSIYLSCLTVYLSCLSV 75
Query: 101 YTFGYSISIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIP------SGTVYLYTFGYSIY 154
Y Y +S+ L + Y+ + +Y Y +SIYL + ++ ++YL T+ S+Y
Sbjct: 76 YLSVYHMSVCLSI-YLSYVCLSIYLSIY-VSIYLSIYHMSVFHLSVCLSIYLSTYHMSVY 133
>ref|NP_344124.1| Cytochrome b558/566, subunit A (cbsA) [Sulfolobus solfataricus P2]
gi|13816150|gb|AAK42914.1| Cytochrome b558/566, subunit
A (cbsA) [Sulfolobus solfataricus P2]
gi|13878414|sp|P58029|CBSA_SULSO Cytochrome b558/566
subunit A
Length = 479
Score = 37.4 bits (85), Expect = 0.75
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 271 PHPALASPSLASSTLADPRSGPSVTQSILPTVPAMENCKIAMHRNPPKSQVNYTT----- 325
P PA + S A++ L P SGP + + I+ T + K+ NY +
Sbjct: 112 PEPAFGAWSAAAAALYPPASGPGLFRQIMLTPGTTYTIE--------KNYTNYFSIVNGN 163
Query: 326 ILQGNLLVNQSNHLLPATNN 345
I+QG L++N S LLPA N+
Sbjct: 164 IIQGRLVLNYSGILLPAPND 183
>ref|YP_142414.1| unknown [Acanthamoeba polyphaga mimivirus]
gi|55416685|gb|AAV50335.1| unknown [Acanthamoeba
polyphaga mimivirus]
Length = 621
Score = 37.4 bits (85), Expect = 0.75
Identities = 36/117 (30%), Positives = 52/117 (43%), Gaps = 8/117 (6%)
Query: 49 IYIPSGTVYT-FGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQYFYIPSGTVYTFGYSI 107
+ IP Y GY+I L +P G +L F YN ++ F + T FG
Sbjct: 177 VIIPRNVKYLKIGYNI--LLNETTLPYGLTHL-VFDYNFNGKINGFIPETVTHLEFGNKF 233
Query: 108 SIYLRVQYIPSGTVYLYTFGYSISIYLRVQYIPSGTVYLYTFGYSIYLRASVSRFVM 164
+ L + IPS VYL FG + + + IPS +L FGY Y ++R V+
Sbjct: 234 NQPLEIDDIPSNVVYL-KFGTDFNQPITSKVIPSSVKHL-EFGY--YFNQPINRGVL 286
>emb|CAA92346.1| Nim2p [Saccharomyces cerevisiae] gi|6320413|ref|NP_010493.1|
Regulator of both repression and induction of early
meiotic genes. Ume6p requires Ume4 for mitotic
repression and interacts with and requires Ime1p and
Rim11p for induction of meiosis-specific transcription;
Ume6p is a C6 zinc finger URS1-binding protein.; Ume6p
[Saccharomyces cerevisiae]
gi|1718025|sp|P39001|UME6_YEAST Transcriptional
regulator UME6 (Negative transcriptional regulator of
IME2) gi|435118|gb|AAC14472.1| transcriptional regulator
[Saccharomyces cerevisiae]
Length = 836
Score = 37.0 bits (84), Expect = 0.99
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Query: 225 VRPPISQHNKKVSRLGSNPMNKLDSPPKTDSIITPNTRLKIHVPPRPHPALASP-SLASS 283
++P + N+ V S N S T +I+ + KIH+PP PA++SP + A+
Sbjct: 181 IQPQYTATNEDVFPYSSTSTN---SNTATTTIVA-GAKKKIHLPPPQAPAVSSPGTTAAG 236
Query: 284 TLADPRSG-PSVTQSILPTVPAMENCKIAMHRNPPKSQV--NYTTILQGNLLVNQSNHLL 340
+ A SG S T S LP + N N P S + N +T N + S+
Sbjct: 237 SGAGTGSGIRSRTGSDLPLIITSANKNNGKTTNSPMSILSRNNSTNNNDNNSIQSSDSRE 296
Query: 341 PATNNYSQHYL---LKPGKLPTAQAQIKQTRH 369
+ NN YL K G P+ +Q++ H
Sbjct: 297 SSNNNEIGGYLRGGTKRGGSPSNDSQVQHNVH 328
>emb|CAB02707.1| Hypothetical protein C01G10.5 [Caenorhabditis elegans]
gi|17557454|ref|NP_506718.1| putative secreted or
extracellular protein precursor (5P570) [Caenorhabditis
elegans] gi|7495119|pir||T18816 hypothetical protein
C01G10.5 - Caenorhabditis elegans
Length = 138
Score = 37.0 bits (84), Expect = 0.99
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 39/118 (33%)
Query: 34 YLYTFGYSIYLRVQYIYIPS----GTVYTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLR 89
Y Y GY+ Y Y P+ G Y GY+ + Y T Y YT+G N YL+
Sbjct: 34 YNYNNGYTTYY-----YYPNNNNNGYYYDNGYNNNGY---------TTYYYTYGKNCYLQ 79
Query: 90 V-----------QYFYIPSGTVYTFGY--------SISIYLRVQYIPSG-TVYLYTFG 127
V + +Y P GT Y GY S Y Y +G T Y YT+G
Sbjct: 80 VDLDIFNVKFARKIYYYPDGT-YNNGYYYYPSNDNSGGYYYNGYYYDTGYTPYYYTYG 136
>emb|CAC11683.1| hypothetical membrane protein [Thermoplasma acidophilum]
gi|16081650|ref|NP_394017.1| hypothetical membrane
protein [Thermoplasma acidophilum DSM 1728]
Length = 1124
Score = 37.0 bits (84), Expect = 0.99
Identities = 31/130 (23%), Positives = 54/130 (40%), Gaps = 8/130 (6%)
Query: 38 FGYSIYLRVQYIYIPSGTV------YTFGYSISIYLRVQYIPSGTVYLYTFGYNIYLRVQ 91
F Y++ Y P G V Y+ GY+ + + V+Y + + + Q
Sbjct: 152 FNYTMARYYNNSYQPGGQVSLKMENYSHGYAYRLNISVEYEYANASHPASIYVVYENESQ 211
Query: 92 YFYIPSGTVYTFGYSISIYLRVQYIPSGTVYLYTFGYSISIY-LRVQYIPSGTVYLY-TF 149
Y ++ + T T Y I R P +Y+Y+ + +Y + I + T YLY +
Sbjct: 212 YLHLSASTTMTTSYFTFILQRPSANPLPEIYVYSNESDLEVYNITALAIANDTYYLYGSQ 271
Query: 150 GYSIYLRASV 159
Y +YL S+
Sbjct: 272 HYDLYLSNSI 281
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 684,311,593
Number of Sequences: 2540612
Number of extensions: 31193890
Number of successful extensions: 84845
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 84664
Number of HSP's gapped (non-prelim): 221
length of query: 378
length of database: 863,360,394
effective HSP length: 130
effective length of query: 248
effective length of database: 533,080,834
effective search space: 132204046832
effective search space used: 132204046832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0103.4