BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0103.3
         (186 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAH06294.1| conserved hypothetical protein [Bacteroides frag...    33  3.0
gb|AAX27075.1| unknown [Schistosoma japonicum]                         33  3.0
ref|NP_042505.1| ORF2054 [Pinus thunbergii] gi|7484504|pir||T075...    33  3.0
ref|YP_097872.1| hypothetical protein BF0589 [Bacteroides fragil...    33  3.0
ref|NP_083893.1| hypothetical protein LOC76464 [Mus musculus] gi...    33  4.0
emb|CAG29718.1| immunoglobulin heavy chain [Homo sapiens]              33  4.0
gb|AAO78620.1| conserved hypothetical protein [Bacteroides theta...    33  5.2
ref|ZP_00318564.1| COG3343: DNA-directed RNA polymerase, delta s...    32  8.8
gb|EAA22409.1| hypothetical protein [Plasmodium yoelii yoelii]         32  8.8

>emb|CAH06294.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
           gi|60680108|ref|YP_210252.1| hypothetical protein BF0539
           [Bacteroides fragilis NCTC 9343]
          Length = 982

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 51  WWIDPPCKCHGGIDSLVVPVNFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKE 103
           WW D P K H  +  +  P  +S +  +  +   LN  +W L+ W    FEKE
Sbjct: 162 WWGDVPVKTHKAL-YVDAPPTYSKTPSVKYRGIFLNDEDWGLKPWAAKTFEKE 213


>gb|AAX27075.1| unknown [Schistosoma japonicum]
          Length = 164

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 107 NKILEKDMK--CENALVSELKLEGKRAGMRS--EDVIGSETQLRKEVAKWIN--MFYSFE 160
           NK LE+D K      +    +LEGKR G        IG  T+L   + +W +   FY  E
Sbjct: 37  NKCLEEDAKKWARQCINKTEELEGKRVGKWELVGQNIGLTTELYDVLNEWADGAYFYDHE 96

Query: 161 LCKCKNIVICQNLMIILIAN 180
             KC N  +C     I+  N
Sbjct: 97  TNKCNNTELCNKYKRIVQRN 116


>ref|NP_042505.1| ORF2054 [Pinus thunbergii] gi|7484504|pir||T07584 hypothetical
            protein 2054 - Japanese black pine chloroplast
            gi|1175644|sp|P41653|YCF2_PINTH Protein ycf2
            gi|1262745|dbj|BAA04460.1| ORF2054 [Pinus thunbergii]
          Length = 2054

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 75   SHFLNNKSDQL--NIGEWFLESWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAG 132
            S   +NK++++   I +WF+          ECL NKI+ +D+   + L +  K E     
Sbjct: 956  SEMFSNKNEEIFPRIQDWFVT---------ECLKNKIVNEDIDGRSTLSNSSKEEQNIYR 1006

Query: 133  MRSEDVIGSETQLRKEVAKWINMFYSFELCKCKNIVICQNLMIILIANAECYKS 186
            +   D I S+  L K    W   F++   CK    ++   L  IL+  +  + S
Sbjct: 1007 ISQIDSIFSKWDLFKTYMPW---FFTSAWCKYIENMLLDTLSEILLHGSNPFVS 1057


>ref|YP_097872.1| hypothetical protein BF0589 [Bacteroides fragilis YCH46]
           gi|52214745|dbj|BAD47338.1| conserved hypothetical
           protein [Bacteroides fragilis YCH46]
          Length = 982

 Score = 33.5 bits (75), Expect = 3.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 51  WWIDPPCKCHGGIDSLVVPVNFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKE 103
           WW D P K H  +  +  P  +S +  +  +   LN  +W L+ W    FEKE
Sbjct: 162 WWGDVPVKTHKAL-YVDAPPTYSKTPSVKYRGIFLNDEDWGLKPWAAKTFEKE 213


>ref|NP_083893.1| hypothetical protein LOC76464 [Mus musculus]
            gi|51593321|gb|AAH80815.1| RIKEN cDNA 2310043D08 [Mus
            musculus]
          Length = 1612

 Score = 33.1 bits (74), Expect = 4.0
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 9/95 (9%)

Query: 55   PPCKCHGGIDSLVVPVNFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKECLGNKILEKDM 114
            P C    GI S+   +N S S F+N ++  +  GE      + LD E+  L       D 
Sbjct: 1503 PVCSKDPGIGSVAAKLNLSPSQFINEENLPVYPGEILSSDSVSLDIEESVL------IDT 1556

Query: 115  KCENALVSELKLEGKRAGMRS---EDVIGSETQLR 146
                +L SE K E  RA  R+   E+ + +E ++R
Sbjct: 1557 SQRESLPSENKTENCRAQKRTRVEENDVTNEKKIR 1591


>emb|CAG29718.1| immunoglobulin heavy chain [Homo sapiens]
          Length = 143

 Score = 33.1 bits (74), Expect = 4.0
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 11/53 (20%)

Query: 21 LWWMGPTILYGDSTTYRKISMEDGAIVRARWWI---DPPCK--------CHGG 62
          LWW GP ++    T     ++  G+I    WW     PP K        CHGG
Sbjct: 43 LWWSGPGLVKPSGTLSLTCAVSGGSIKSRNWWTWVRQPPGKGLEWIGEICHGG 95


>gb|AAO78620.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482] gi|29348923|ref|NP_812426.1| hypothetical
           protein BT3514 [Bacteroides thetaiotaomicron VPI-5482]
          Length = 982

 Score = 32.7 bits (73), Expect = 5.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 51  WWIDPPCKCHGGIDSLVVPVNFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKE 103
           WW D P K H  +  +  P   S +  +  +   LN  +W L+ W    FEKE
Sbjct: 162 WWADVPVKKHKTL-YVDAPATLSKTPSVKYRGIFLNDEDWGLKPWAAKTFEKE 213


>ref|ZP_00318564.1| COG3343: DNA-directed RNA polymerase, delta subunit [Oenococcus
           oeni PSU-1]
          Length = 195

 Score = 32.0 bits (71), Expect = 8.8
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 78  LNNKSDQLNIGE--WFLESWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKRAGMRS 135
           LN     +++GE  W L SW  +D   E +   + E+D K +       K  GK+A    
Sbjct: 60  LNADGSFISMGENEWALRSWFAIDSINESIHEDLDEEDEKPK-------KKRGKKAAAVE 112

Query: 136 EDVIG 140
           +DVIG
Sbjct: 113 DDVIG 117


>gb|EAA22409.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 472

 Score = 32.0 bits (71), Expect = 8.8
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 8/107 (7%)

Query: 71  NFSNSHFLNNKSDQLNIGEWFLESWLVLDFEKECLGNKILEKDMKCENALVSELKLEGKR 130
           N S+    NNKSD+ N  +   +  + L  ++ CL N +L+++      ++++LK+    
Sbjct: 85  NKSDKKSENNKSDKNNEQDESQDGGIFLIEKELCLRNDLLKEN------ILTKLKININE 138

Query: 131 AGMRSEDVIGSETQLRKEVAKWINMFYSFELCKCKNIVICQNLMIIL 177
                +D I +E     +  K +N  Y +EL +C N  + +N+  +L
Sbjct: 139 YLYNVKDKIYNEILFAVDKKKLLNK-YIYEL-QCNNFEVLKNIFFLL 183


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.322    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,590,383
Number of Sequences: 2540612
Number of extensions: 12915618
Number of successful extensions: 23612
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 23610
Number of HSP's gapped (non-prelim): 10
length of query: 186
length of database: 863,360,394
effective HSP length: 120
effective length of query: 66
effective length of database: 558,486,954
effective search space: 36860138964
effective search space used: 36860138964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)