Lotus: BLAST2 result

BLAST2 result

BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0102a.7
         (1496 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]   1364  0.0
gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cult...  1309  0.0
emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar...  1308  0.0
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul...  1307  0.0
ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cu...  1306  0.0
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult...  1305  0.0
emb|CAE75877.1| B1234D02.1 [Oryza sativa (japonica cultivar-grou...  1303  0.0
ref|XP_476280.1| putative polyprotein [Oryza sativa (japonica cu...  1303  0.0
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar...  1302  0.0
gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cult...  1301  0.0
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar...  1301  0.0
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul...  1301  0.0
ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultiva...  1299  0.0
gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cult...  1296  0.0
emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar...  1295  0.0
gb|AAQ56471.1| putative polyprotein [Oryza sativa (japonica cult...  1295  0.0
gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica ...  1294  0.0
emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa (japonica cultivar...  1293  0.0
ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultiv...  1293  0.0
gb|AAL59229.1| gag-pol [Zea mays]                                    1293  0.0

>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
          Length = 1602

 Score = 1364 bits (3531), Expect = 0.0
 Identities = 735/1531 (48%), Positives = 991/1531 (64%), Gaps = 84/1531 (5%)

Query: 25   REEAEAQRAATAALVAAQNHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDP 84
            +++ E   A     +   +    N    QR  R + A  +R + +F   +PP F G    
Sbjct: 87   QDQGEVSNAEFREAIRMLSQVVANQVGQQRGVRHEGADTSR-IREFLGMNPPSFMGSSTT 145

Query: 85   EEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYW---WRGARAMMEADHQAITWE 141
            E+ + +++EL++IF  +      +V+ A Y L   A  W   W+G R     +  + +W 
Sbjct: 146  EDPENFIEELKRIFDVMHVADTERVELAAYQLKDVARTWLDQWKGGRV---ENAPSASWA 202

Query: 142  CFRGAFLDKYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQI-DEGYM 200
             F  AFL  +FP+  + AK  +FL L+Q  ++V EY+ K   L+   RY    + D    
Sbjct: 203  NFEEAFLGHFFPRELKEAKVREFLTLKQEPLSVREYSLKFTQLS---RYAPEMVADMRNR 259

Query: 201  CERFIDGLSY---ELQRAVQPLG---LNRYQVLV-----EKTKGIEAIDNARGKF---QG 246
               F+ GLS    +  RA   +G   ++R  V V     EK +  E   + R K     G
Sbjct: 260  MSLFVAGLSRLSSKEGRAAMLIGDMDISRLMVYVQQVEEEKLRDREEFRSKRAKTGNEPG 319

Query: 247  QNKLN-------QGSGGPARTNQG----------RGDKGRYFQKKPYVRPQGRGTASGSF 289
            Q K N       +   GPA ++             G   + F+ +P V+  G      S 
Sbjct: 320  QQKGNANRPSFQERQKGPAPSSVSAPAPRYRGGHNGQNSKDFKARP-VQSSGSVAQRSSL 378

Query: 290  YPTGENAIAPRPLGVSLDGVT-CFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK 348
            +P         P G   DG T CFKC Q+GH+   CP+      N    G L    +   
Sbjct: 379  FPACARCGRTHP-GKCRDGQTGCFKCGQEGHFVKECPK------NNQGSGSLGSRTQSSS 431

Query: 349  VE--DAANVVGARRPTAGG--RVYSISGT-EAEEDDGLIRSTCEIAGNSLIALFDSGATH 403
            V   D     GA   T GG  R+Y+I+   E E    ++ +  ++    + AL D GA+ 
Sbjct: 432  VAPPDRMTPRGATSSTGGGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASL 491

Query: 404  SFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKKFIANLICLPLK 463
            SF+    A +  +   +L     VSTP  +S++      +CP     K  + +LI L + 
Sbjct: 492  SFVTPYVANKFDVLPERLCEPFCVSTPVGESILAERVYRDCPVSINHKSTMVDLIELDMV 551

Query: 464  GLDVIIGMDWLSHHHVLLDCANKVVIF--PDAGLAEFLNS-------YFSKLSLRK---- 510
              DVI+GMDWL   +  +DC  +VV F  P   + E+ +S       + S L  RK    
Sbjct: 552  DFDVILGMDWLHACYASIDCRTRVVKFQFPSEPILEWSSSSAVPKGRFISYLKARKLVSK 611

Query: 511  GALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISI 570
            G +  L        +    Q + +V+EF +VFP+D+PGIPP R+++F ID++P T PISI
Sbjct: 612  GCIYHLARVNDSSVEIPYFQSVPIVREFPEVFPDDLPGIPPEREIDFGIDLIPDTRPISI 671

Query: 571  APYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVT 630
             PYRMAPAEL ELK    DL +KGFIRPSVSPWGAPVL V+KKDG  R+C+DYRQLNKVT
Sbjct: 672  PPYRMAPAELKELK----DLLEKGFIRPSVSPWGAPVLFVRKKDGSLRICIDYRQLNKVT 727

Query: 631  IKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMP 690
            IKN YPLPRIDDL DQL+GA  FSKIDLRSGYHQ+RV++ DI KTAFRTRYGHYE+LVM 
Sbjct: 728  IKNKYPLPRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMS 787

Query: 691  FGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREKVLY 750
            FG+TNAPA FMD MNR+F P+LD FV++FIDDILIYSRN E+H  HLR VLQ L++K LY
Sbjct: 788  FGLTNAPAAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELY 847

Query: 751  ANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYYRRF 810
            A  +KCEFWL+ V FLGH++S +GI VD  K+E V  W RP + T+IRSF+GLAGYYRRF
Sbjct: 848  AKFSKCEFWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRF 907

Query: 811  IEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDAS 870
            +EGF+ IA PLTKLT+K   F W+E CE+SFQ++K+RL TAPVLTLP+  +   VYCDAS
Sbjct: 908  VEGFSSIASPLTKLTQKTGKFQWSEACEKSFQELKKRLITAPVLTLPEGTQGLVVYCDAS 967

Query: 871  YQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFSD 930
              GLGCVLMQ+ K +AY+SRQLK+HE+NYPTHDLELA VVFALK+WRHYLYG    +F+D
Sbjct: 968  RIGLGCVLMQNGKVIAYASRQLKVHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTD 1027

Query: 931  HKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADALSRQTIHVSSLMIKE- 989
            HKSL+Y+  QK LN+RQRRW+E +KDYD ++LYHPGKANVVAD+LSR ++  S+  I+E 
Sbjct: 1028 HKSLQYVLTQKALNLRQRRWLELLKDYDLSILYHPGKANVVADSLSRLSMG-STTHIEEG 1086

Query: 990  -LELIETFRDLS-LGMQVTPGKLSFGMVTIT----SDFLNEIKVKQLLDEELIEKRNLII 1043
              EL +    L+ LG++ T    + G + +T    S  ++E+K KQ  D  L+E +  + 
Sbjct: 1087 RRELAKDMHRLACLGVRFTDS--TEGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQ 1144

Query: 1044 LGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFW 1103
              +   FE G D +LR +GR+CVP+   L+  +++E H SR S+HPGSTKMY+DL+  +W
Sbjct: 1145 KQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYW 1204

Query: 1104 WPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRF 1163
            W GMKK +AE+VA C  CQ+ K+EHQ+P G+ Q++++PEWKW+ I+MDF+  LP +R++ 
Sbjct: 1205 WNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQH 1264

Query: 1164 DSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWK 1223
            DSIWVIVDR+TKSAHF+PVKTT + E  AK+Y+ EIVRLHGVP SI+SDR  +FT+ FWK
Sbjct: 1265 DSIWVIVDRMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWK 1324

Query: 1224 ALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNS 1283
            +  + LG+K+ LS+A+HPQTDGQ ERTIQ+LED+LRACV+D + +WD+ LPLIEF YNNS
Sbjct: 1325 SFQKGLGSKVSLSTAFHPQTDGQAERTIQTLEDMLRACVIDFKSNWDDHLPLIEFAYNNS 1384

Query: 1284 FHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQK 1343
            +H+SI MAPYEALYGRRCR+P+ WF+ GE  L+GP+LV Q  EKVK IQE+++T+QSRQK
Sbjct: 1385 YHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDLVHQAMEKVKVIQERLKTAQSRQK 1444

Query: 1344 SYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIAL 1403
            SY D RRR LEFE  D V+L+V+P  GV R  K  KL+P++IGPY+I++RVG VAY + L
Sbjct: 1445 SYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIVQRVGSVAYELEL 1504

Query: 1404 PPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQV 1463
            P  L+ +H V H+S L+K I DPS I+  + ++++DNLS+E  P++I +R++++LR K V
Sbjct: 1505 PQELAAVHPVFHISMLKKCIGDPSLILPTESVKIKDNLSYEEVPVQILDRQVRRLRTKDV 1564

Query: 1464 PLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
              VKV+W NQ   +ATWE EE MK++YP LF
Sbjct: 1565 ASVKVLWRNQFVEEATWEAEEDMKKRYPHLF 1595


>gb|AAP52586.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37531994|ref|NP_920299.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
            gi|22857578|gb|AAN09852.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1715

 Score = 1309 bits (3388), Expect = 0.0
 Identities = 709/1447 (48%), Positives = 939/1447 (63%), Gaps = 65/1447 (4%)

Query: 67   LNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRG 126
            L +F R  PP FS   +P EA  WL  +EK    L+ T + KV +A++ L G A  WW  
Sbjct: 302  LAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDH 361

Query: 127  ARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAK 186
             R +     + ITW  F  AF   + P    + K+ +F  L QG  +V EY ++   LA+
Sbjct: 362  FR-LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLAR 420

Query: 187  HFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQG 246
            +        +E    E+F+ GL+ EL   +       +Q LV+K   I   D      Q 
Sbjct: 421  YAPEDVRNDEERQ--EKFLGGLNDELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQK 476

Query: 247  QNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTA----SGSFYPT--GENA--IA 298
            + ++ Q      +T QG   K R     P   PQG  ++       F+    G N   +A
Sbjct: 477  KRRIAQ-----FKTQQGNNQKPR-LTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNLA 530

Query: 299  PRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIP---KVEDAANV 355
            PRP+ V        +  ++G+        P++C+NC  PGH A  C  P   KV  A N 
Sbjct: 531  PRPVAVPAQQQPAKR--EQGNK-------PVVCFNCGDPGHYADKCPKPRRVKVVPAQN- 580

Query: 356  VGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLK 415
              +  PT+  RV  ++  EA++   +I     +       LFDSGATHSF+ ++ A    
Sbjct: 581  -NSAVPTSKARVNHVAAAEAQDAPDVILGMFLVNSVPATVLFDSGATHSFLSMSFAGNHG 639

Query: 416  LEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMD 472
            +EV  L   L VSTP++++L    +    P + ++ +   F+ANLI L  K LDVI+GMD
Sbjct: 640  MEVEDLRCPLMVSTPSNQALSLQRS----PSVRIEIQGVPFLANLILLESKDLDVILGMD 695

Query: 473  WLSHHHVLLDCANKVVIFPDAGLAEFLNSYFSKL----SLRKGALSSLMSTTVMEAKENG 528
            WL+ H  ++DCAN+ V          LNSY  ++    +L   +L S ++   +E     
Sbjct: 696  WLARHKGVIDCANRKVT---------LNSYDGRVVTVHALSSESLRSRLNQITLEE---- 742

Query: 529  IQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLE 588
               I +V+E+ DVFP+D+PG+PP RD+EF ID+VPGT PI   PYRMA  EL E+K Q++
Sbjct: 743  ---IPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVD 799

Query: 589  DLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLK 648
            DL +KG+IRPS SPWGAPV+ V+KKD   R+CVDYR LN VTIKN YPLPRIDDL DQLK
Sbjct: 800  DLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLK 859

Query: 649  GAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIF 708
            GA +FSKIDLRSGYHQ+R+K+EDI KTAF TRYG +E  VM FG+TNAPA FM+ MN++F
Sbjct: 860  GATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVF 919

Query: 709  HPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGH 768
              +LD+FVVVFIDDILIYSR  EEHEEHLR  L+ LRE  LYA  +KCEFWL EVKFLGH
Sbjct: 920  MEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGH 979

Query: 769  VISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKN 828
            +IS  G+AVDPS VE+V  W +PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+
Sbjct: 980  IISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKD 1039

Query: 829  QPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYS 888
              + W+E+CEQSFQ++K RL +AP+L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+
Sbjct: 1040 VKYKWSEECEQSFQELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYA 1099

Query: 889  SRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQR 948
            SRQL+ HE+NYPTHD+ELAAVV ALKIWRHYL+G+   V++DHKSLKY+F Q DLNMRQR
Sbjct: 1100 SRQLRPHEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQSDLNMRQR 1159

Query: 949  RWMEFIKDYDFTLLYHPGKANVVADALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTP 1007
            RW+E IKDYD  + YHPGKANVVADALSR+   + +      LEL + F  L+LG+    
Sbjct: 1160 RWLELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGI---V 1216

Query: 1008 GKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVP 1067
            G+     +      +++++  Q+ D ++ E +  +  GKA  F       +    R+CVP
Sbjct: 1217 GRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVP 1276

Query: 1068 LDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIE 1127
             + +L+  IL E H +  SIHPGSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K E
Sbjct: 1277 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAE 1336

Query: 1128 HQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFN 1187
            HQKPAG+LQ L +PEWKW+ I MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++
Sbjct: 1337 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1396

Query: 1188 VEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQT 1247
               LA++Y+A IV LHGVP  IVSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQT
Sbjct: 1397 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1456

Query: 1248 ERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCW 1307
            ER  Q LED+LRAC LD   SWD+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W
Sbjct: 1457 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1516

Query: 1308 FQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTP 1367
             Q GE  + G +++++  EKVK IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP
Sbjct: 1517 DQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTP 1576

Query: 1368 TTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPS 1427
              GV R     KL P+F+GPY+I+ R G+VAY++ LP  L+ +H+V HVSQL+K +  P+
Sbjct: 1577 LRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPT 1636

Query: 1428 HIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMK 1486
                 + I+++++L++   P+RI E   ++ RN+ +   KV W N    ++TWE E+++K
Sbjct: 1637 EEANIEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELK 1696

Query: 1487 EQYPELF 1493
              +P LF
Sbjct: 1697 SAHPHLF 1703


>emb|CAE04776.3| OSJNBb0115I21.3 [Oryza sativa (japonica cultivar-group)]
            gi|50930145|ref|XP_474600.1| OSJNBb0115I21.3 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1779

 Score = 1308 bits (3385), Expect = 0.0
 Identities = 719/1485 (48%), Positives = 948/1485 (63%), Gaps = 73/1485 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 330  TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEASD 388

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 389  WLHAIEKKLDLLQCTDQDKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 447

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMC-ERFIDGL 208
             + P    + K+ +F  L QG  +V EY ++   LA   RY    +     C E+F+ GL
Sbjct: 448  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLA---RYAPEDVRNDEECQEKFLGGL 504

Query: 209  SYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKG 268
            + EL   +       +Q LV+K   I   D      Q + ++ Q      +T QG   K 
Sbjct: 505  NDELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKP 557

Query: 269  RYFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHY 320
            R     P   PQG  ++        F     N I   APRP+ V        +  ++G+ 
Sbjct: 558  R-LTLGPQSVPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAVPAQQQPAKR--EQGNK 614

Query: 321  ASHCPEGPLMCWNCNKPGHLARDCRIP---KVEDAANVVGARRPTAGGRVYSISGTEAEE 377
                   P++C+NC  PGH A  C  P   KV  A N   +  P +  RV  ++  EA+ 
Sbjct: 615  -------PVVCFNCGDPGHYADKCPKPRRVKVVPAQN--NSAVPASKARVNHVAAAEAQG 665

Query: 378  DDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVT 437
               +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP++++L  
Sbjct: 666  APDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSL 725

Query: 438  NTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAG 494
              +    P + ++ +   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN+ V      
Sbjct: 726  QRS----PSVRIEIQGVPFLANLILLKSKDLDVILGMDWLARHKGVIDCANRKVT----- 776

Query: 495  LAEFLNSYFSKL----SLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIP 550
                LNSY  ++    +L   +L S ++   +E        I +V+E+ DVFP+D+PG+P
Sbjct: 777  ----LNSYDGRVVTVHALSSESLRSRLNQITLEE-------IPIVREYPDVFPDDLPGMP 825

Query: 551  PVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLV 610
            P RD+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V
Sbjct: 826  PKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFV 885

Query: 611  KKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDE 670
            +KKD   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+E
Sbjct: 886  EKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEE 945

Query: 671  DIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNL 730
            DI KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  
Sbjct: 946  DIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTK 1005

Query: 731  EEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDR 790
            EEHEEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W +
Sbjct: 1006 EEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQ 1065

Query: 791  PKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTT 850
            PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +
Sbjct: 1066 PKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLIS 1125

Query: 851  APVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVV 910
            AP+L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHD+ELAAVV
Sbjct: 1126 APILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVV 1185

Query: 911  FALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANV 970
             ALKIWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANV
Sbjct: 1186 HALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANV 1245

Query: 971  VADALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQ 1029
            V DALSR+   + +      LEL + F  L+LG+    G+     +      +++++  Q
Sbjct: 1246 VVDALSRKGYCNATEGRQLPLELCKEFERLNLGI---VGRGFVAALEAKPTLIDQVREAQ 1302

Query: 1030 LLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHP 1089
            + D ++ E +  +  GKA  F       +    R+CVP + +L+  +L E H +  SIHP
Sbjct: 1303 INDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAVLKEAHDTLYSIHP 1362

Query: 1090 GSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSIS 1149
            GSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I 
Sbjct: 1363 GSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIG 1422

Query: 1150 MDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSI 1209
            MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  I
Sbjct: 1423 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1482

Query: 1210 VSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESW 1269
            VSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   SW
Sbjct: 1483 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1542

Query: 1270 DELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVK 1329
            D+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK
Sbjct: 1543 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1602

Query: 1330 QIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQ 1389
             IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+
Sbjct: 1603 VIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 1662

Query: 1390 IIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMR 1449
            I+ R G+VAY++ LP  L+ +H+V HVSQL+K +  P+     + I+++++L++   P+R
Sbjct: 1663 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIR 1722

Query: 1450 IEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
            I E   ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1723 ILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1767


>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
            gi|37531590|ref|NP_920097.1| putative retroelement [Oryza
            sativa (japonica cultivar-group)]
            gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
            sativa (japonica cultivar-group)]
          Length = 1449

 Score = 1307 bits (3383), Expect = 0.0
 Identities = 704/1432 (49%), Positives = 928/1432 (64%), Gaps = 44/1432 (3%)

Query: 75   PPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEAD 134
            PP FS   +P EA  WL  +EK    ++ T + KV +A++ L G A  WW   R    A 
Sbjct: 39   PPTFSSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFR-QGRAG 97

Query: 135  HQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQ 194
             + ITW+ F  AF   + P    A K+ +F  L QG  +V EY +    LA++       
Sbjct: 98   GEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVHT 157

Query: 195  IDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIEAIDNA---RGKFQGQNKLN 251
             +E    E+F++GL+ EL   +       +Q LV+K    E   N    + +   Q K  
Sbjct: 158  DEERQ--EKFLEGLNDELSYTLMSTEFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQ 215

Query: 252  QGSGGPARTNQGRGDKGRYFQ--KKPYVRPQGRGTASGSFYPTGENA-IAPRPLGVSLDG 308
            QGS    R   G      Y Q      VRPQ +   + +     EN  +  RP    +  
Sbjct: 216  QGSNQRPRLIPGP-QVPSYPQGGSSSVVRPQRQFYNNNTGNRGNENRNVVARPAATPVQN 274

Query: 309  VTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK-VEDAANVVGARRPTAGGRV 367
                K  ++G         P++C+NC  PGH A  C  P+ V++      +  P    RV
Sbjct: 275  QPVRK--EQG-------SKPVICFNCGDPGHYADKCPKPRHVKNVPVPNNSNVPAPKARV 325

Query: 368  YSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTV 427
              ++  EA+    ++  T  +       LFDSGATHSF+  + AT+  +EV  L   L V
Sbjct: 326  NHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFATKHGMEVVSLGRPLLV 385

Query: 428  STPASKSLVTNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCA 484
            +TP ++   T      CP + ++ +   F ++LI L  K LDVI+GMDWLS H  ++DCA
Sbjct: 386  NTPGNQVFSTRY----CPSVTIEIEGVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCA 441

Query: 485  NKVVIFPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPE 544
            N+ V   ++       S+F+      G + + ++          +Q I +VQ++ DVFPE
Sbjct: 442  NRKVTLTNSNGETV--SFFASSPKSHGVVLNQVA----------LQEIPIVQDYPDVFPE 489

Query: 545  DVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWG 604
            D+PG+PP RD+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWG
Sbjct: 490  DLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWG 549

Query: 605  APVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQ 664
            APV+ V+KKD   R+CVDYR LN+VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ
Sbjct: 550  APVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQ 609

Query: 665  IRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDIL 724
            +R+++EDI KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDIL
Sbjct: 610  LRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDIL 669

Query: 725  IYSRNLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVET 784
            IYS+  EEH+EHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+
Sbjct: 670  IYSKTKEEHKEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVES 729

Query: 785  VLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDM 844
            VL+W +PKTV+++RSF+GLAGYYRRFIE F+KIA P+T+L +K   + WTEDCEQSFQ++
Sbjct: 730  VLSWKQPKTVSEVRSFLGLAGYYRRFIENFSKIARPMTRLLQKEVKYKWTEDCEQSFQEL 789

Query: 845  KERLTTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDL 904
            K+RL TAPVL LP   + ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE NYPTHDL
Sbjct: 790  KKRLVTAPVLILPDSRKGFQVYCDASRLGLGCVLMQEGKVVAYASRQLRPHENNYPTHDL 849

Query: 905  ELAAVVFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYH 964
            ELAAVV ALKIWRHYLYG+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YH
Sbjct: 850  ELAAVVHALKIWRHYLYGNRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMEIHYH 909

Query: 965  PGKANVVADALSRQT-IHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLN 1023
            PGKANVVADALSR++  ++S       EL + F  L+LG+ V+ G ++   +       +
Sbjct: 910  PGKANVVADALSRKSYCNMSEGRCLPWELCQEFEKLNLGI-VSKGFVA--ALEAKPTLFD 966

Query: 1024 EIKVKQLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKS 1083
            +I+  Q+ D  + E +  +  GKA  F       +    R+CVP + EL+  I+ E H++
Sbjct: 967  QIREAQVNDPYIQEIKKNMRRGKAIGFVEDEQGTVWLGERICVPENKELKDTIMKEAHET 1026

Query: 1084 RLSIHPGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEW 1143
              SIHPGSTKMYQDLK  FWW  M++ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEW
Sbjct: 1027 LYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEW 1086

Query: 1144 KWDSISMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLH 1203
            KW+ I MDF+  LP T    DSIWV+VDRLTK AHFIPVKTT+    LA++Y+A +V LH
Sbjct: 1087 KWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYTGHKLAELYMARVVCLH 1146

Query: 1204 GVPSSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVL 1263
            GVP  IVSDR  +FTS FW+ L   LGT+L  S+AYHPQTDGQTER  Q LED+LRACVL
Sbjct: 1147 GVPKKIVSDRGSQFTSKFWQKLQSELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACVL 1206

Query: 1264 DSQESWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQ 1323
            D   SWD+ LP  EF+YNNS+ AS+ M+P EALYGR+CRTPL W Q GE  + G +++++
Sbjct: 1207 DFGGSWDKNLPYAEFSYNNSYQASLQMSPNEALYGRKCRTPLLWDQTGERQVFGTDILRE 1266

Query: 1324 TTEKVKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPK 1383
              EKVK IQE++R +QS QKSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+
Sbjct: 1267 AEEKVKIIQERLRVAQSCQKSYADNRRRDLVFEEGDYVYLRVTPLRGVHRFQTKGKLAPR 1326

Query: 1384 FIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSF 1443
            F+GP++I+ R G+VAY++ LPP ++ IHDV HVSQL+K +  P+     D I+L+++L++
Sbjct: 1327 FVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDCIELQEDLTY 1386

Query: 1444 EVAPMRIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELFT 1494
               P+RI E   ++ RN+ +   KV W N    +ATWE E+++K  +P LF+
Sbjct: 1387 VEKPVRILEVSERKTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHLFS 1438


>ref|NP_917371.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1475

 Score = 1306 bits (3380), Expect = 0.0
 Identities = 711/1461 (48%), Positives = 942/1461 (63%), Gaps = 65/1461 (4%)

Query: 53   QREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 112
            Q+ +    A     L +F R  PP FS   +P EA  WL  +EK    L+ T + KV +A
Sbjct: 48   QQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFA 107

Query: 113  TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGM 172
            ++ L G A  WW   R +     + ITW  F  AF   + P    + K+ +F  L QG  
Sbjct: 108  SHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSR 166

Query: 173  TVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTK 232
            +V EY ++   LA++        +E    E+F+ GL+ EL   +       +Q LV+K  
Sbjct: 167  SVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLGGLNDELSYPLMVGDYPDFQKLVDKA- 223

Query: 233  GIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTA-----SG 287
             I   D      Q + ++ Q      +T QG   K R     P   PQG  ++       
Sbjct: 224  -IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKPR-LTLGPQSMPQGCSSSVVRPQRQ 276

Query: 288  SFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDC 344
             F     N I   APRP+ V        +  ++G+        P++C+NC  PGH A  C
Sbjct: 277  FFNNNAGNNIRNQAPRPVAVPAQQQPAKR--EQGNK-------PVVCFNCGDPGHYADKC 327

Query: 345  RIP---KVEDAANVVGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGA 401
              P   KV  A N   +  P +  RV  ++  EA++   +I  T  +       LFDSGA
Sbjct: 328  PKPRRVKVVPAQN--NSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGA 385

Query: 402  THSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKK---FIANLI 458
            THSF+ ++ A    +EV  L   L VSTP++++L    +    P + ++ +   F+ANLI
Sbjct: 386  THSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRS----PSVRIEIQGVPFLANLI 441

Query: 459  CLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGLAEFLNSYFSKL----SLRKGALS 514
             L  K LDVI+GMDWL+ H  ++DCAN+ V          LNSY  ++    +L   +L 
Sbjct: 442  LLESKDLDVILGMDWLARHKGVIDCANRKVT---------LNSYDGRVVTVHALSSESLR 492

Query: 515  SLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYR 574
            S ++   +E        I +V+E+ DVFP+D+PG+PP RD+EF ID+VPGT PI   PYR
Sbjct: 493  SRLNQITLEE-------IPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYR 545

Query: 575  MAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNC 634
            MA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD   R+CVDYR LN VTIKN 
Sbjct: 546  MAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNK 605

Query: 635  YPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVT 694
            YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI KTAF TRYG +E  VM FG+T
Sbjct: 606  YPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLT 665

Query: 695  NAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREKVLYANAA 754
            NAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  EEHEEHLR  L+ LRE  LYA  +
Sbjct: 666  NAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFS 725

Query: 755  KCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGF 814
            KCEFWL EVK LGHVIS  G+AVDPS VE+V  W +PKTV++IRSF+GLAGYYRRFIE F
Sbjct: 726  KCEFWLSEVKLLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENF 785

Query: 815  AKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDASYQGL 874
            +KIA P+T+L +K+  + W+E+CE+SFQ++K RL +AP+L LP  ++ ++VYCDAS  GL
Sbjct: 786  SKIAKPMTRLLQKDVKYKWSEECERSFQELKSRLISAPILILPDPKKGFQVYCDASKLGL 845

Query: 875  GCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFSDHKSL 934
            GCVLMQ  K VAY+SRQL+ HE+NYPTHD+ELAAVV ALKIWRHYL+G+   V++DHKSL
Sbjct: 846  GCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSL 905

Query: 935  KYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADALSRQT-IHVSSLMIKELELI 993
            KY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVADALSR++  +V+      LEL 
Sbjct: 906  KYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADALSRKSYCNVTEGRQLPLELC 965

Query: 994  ETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLIILGKAPDFEVG 1053
            + F  L+LG+    G+     +      +++++  Q+ D ++ E +  +  GKA  F   
Sbjct: 966  KEFERLNLGI---VGRGFIAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLED 1022

Query: 1054 TDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGMKKNVAE 1113
                +    R+CVP + +L+  IL E H +  SIHPGSTKMYQDLK  FWW  MK+ +AE
Sbjct: 1023 EHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWVSMKREIAE 1082

Query: 1114 YVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIWVIVDRL 1173
            YVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I MDF+  LP T    DSIWVIVDRL
Sbjct: 1083 YVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRL 1142

Query: 1174 TKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEALGTKL 1233
            TK AHFIPVKTT++   LA++Y+A IV LHGVP  IVSDR  +FTS+FWK L E +G+KL
Sbjct: 1143 TKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKL 1202

Query: 1234 RLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNSFHASIGMAPY 1293
              S+AYHPQTDGQTER  Q LED+LRAC LD   SWD+ LP  EF+YNNS+ AS+ MAPY
Sbjct: 1203 NFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPY 1262

Query: 1294 EALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQKSYADTRRREL 1353
            EALYGR+CRTPL W Q GE  + G +++++  EKVK IQE++R +QSR KSYAD RRR+L
Sbjct: 1263 EALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDL 1322

Query: 1354 EFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDV 1413
             FE GD+V+LRVTP  GV R     KL P+F+GPY+I+ R G+VAY++ LP  L+ +H+V
Sbjct: 1323 SFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNV 1382

Query: 1414 LHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIW-NQ 1472
             HVSQL+K +  P+     + I+++++L++   P+RI E   ++ RN+ +   KV W N 
Sbjct: 1383 FHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIRILETSERRTRNRVIRFCKVQWSNH 1442

Query: 1473 VTGDATWELEEKMKEQYPELF 1493
               ++TWE E+++K  +P LF
Sbjct: 1443 SEEESTWEREDELKSAHPYLF 1463


>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
            gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
            sativa]
          Length = 1473

 Score = 1305 bits (3377), Expect = 0.0
 Identities = 718/1482 (48%), Positives = 946/1482 (63%), Gaps = 67/1482 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 24   TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEAGD 82

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 83   WLHAIEKKLDLLQCTNQEKVSFASHQLHGPASEWWDHFR-LNRITAEPITWLEFTAAFRK 141

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F+ GL+
Sbjct: 142  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLGGLN 199

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +       +Q LV+K   I   D      Q + ++ Q      +T QG   K R
Sbjct: 200  DELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKPR 252

Query: 270  YFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYA 321
                 P   PQG  ++        F     N I   APRP+             Q+    
Sbjct: 253  -LTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPA---------QQQPAK 302

Query: 322  SHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVG-ARRPTAGGRVYSISGTEAEEDDG 380
                  P++C+NC  PGH A  C  P+      V   +  P +  RV  ++  EA++   
Sbjct: 303  REQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPVQNNSAVPASKARVNHVAAAEAQDAPD 362

Query: 381  LIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTA 440
            +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP++++L    +
Sbjct: 363  VILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLQRS 422

Query: 441  CLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGLAE 497
                P + ++ K   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN+ V         
Sbjct: 423  ----PSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVT-------- 470

Query: 498  FLNSYFSKL----SLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVR 553
             LNSY  ++    +L   +L S ++   +E        I +V+E+ DVFP+D+PG+PP R
Sbjct: 471  -LNSYDGRVVTVHALSSESLRSRLNQVTLEE-------IPIVREYPDVFPDDLPGMPPKR 522

Query: 554  DMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKK 613
            D+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KK
Sbjct: 523  DIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKK 582

Query: 614  DGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQ 673
            D   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI 
Sbjct: 583  DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIP 642

Query: 674  KTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEH 733
            KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  EEH
Sbjct: 643  KTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEH 702

Query: 734  EEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKT 793
            EEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W +PKT
Sbjct: 703  EEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKT 762

Query: 794  VTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPV 853
            V++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +AP+
Sbjct: 763  VSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLVSAPI 822

Query: 854  LTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFAL 913
            L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHDL+LAAVV AL
Sbjct: 823  LILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLKLAAVVHAL 882

Query: 914  KIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVAD 973
            KIWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVAD
Sbjct: 883  KIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVAD 942

Query: 974  ALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLD 1032
            ALSR+   + +      LEL + F  L+LG+ V+ G ++   +      +++++  Q+ D
Sbjct: 943  ALSRKGYCNATEGRQLPLELCKEFERLNLGI-VSRGFVA--ALEAKPTLIDQVREAQIND 999

Query: 1033 EELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGST 1092
             ++ E +     GKA  F       +    R+CVP + +L+  IL E H +  SIHPGST
Sbjct: 1000 PDIQEIKKNRRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGST 1059

Query: 1093 KMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDF 1152
            KMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I MDF
Sbjct: 1060 KMYQDLKKRFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDF 1119

Query: 1153 VVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSD 1212
            +  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  IVSD
Sbjct: 1120 ITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSD 1179

Query: 1213 RDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDEL 1272
            R  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   SWD+ 
Sbjct: 1180 RGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKN 1239

Query: 1273 LPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQ 1332
            LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK IQ
Sbjct: 1240 LPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQ 1299

Query: 1333 EKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIE 1392
            E++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+I+ 
Sbjct: 1300 ERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKIVS 1359

Query: 1393 RVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEE 1452
            R G+VAY++ LP  L+ +HDV HVSQL+K +  P+     + I+++++L++   P+RI E
Sbjct: 1360 RRGEVAYQLELPQSLAGVHDVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIRILE 1419

Query: 1453 RRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
               ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1420 TSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1461


>emb|CAE75877.1| B1234D02.1 [Oryza sativa (japonica cultivar-group)]
            gi|38344464|emb|CAE04935.2| OSJNBa0017P10.12 [Oryza
            sativa (japonica cultivar-group)]
            gi|50921977|ref|XP_471349.1| OSJNBa0017P10.12 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1742

 Score = 1303 bits (3373), Expect = 0.0
 Identities = 717/1484 (48%), Positives = 945/1484 (63%), Gaps = 71/1484 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 293  TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEASD 351

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 352  WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 410

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F+ GL+
Sbjct: 411  THIPSGVVSLKKKEFRSLSQGTRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLGGLN 468

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +       +Q LV+K   I   D      Q + ++ Q      +T QG   K R
Sbjct: 469  DELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKPR 521

Query: 270  YFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYA 321
                 P   PQG  ++        F     N I   APRP+             Q+    
Sbjct: 522  -LTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPIAAP---------TQQQPAK 571

Query: 322  SHCPEGPLMCWNCNKPGHLARDCRIP---KVEDAANVVGARRPTAGGRVYSISGTEAEED 378
                  P++C+NC  PGH A  C  P   KV  A N   +  P +  RV  ++  EA++ 
Sbjct: 572  REQGNKPVVCFNCGDPGHYADKCPKPRRVKVVPAEN--NSAVPASKARVNHVAAAEAQDA 629

Query: 379  DGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTN 438
              +I  T  +     I LFDSGATHSF+ ++      +EV  L   L VSTP++++L   
Sbjct: 630  PDVILGTFLVNSVPAIVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSLQ 689

Query: 439  TACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGL 495
             +    P + ++ +   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN+ V       
Sbjct: 690  RS----PSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVT------ 739

Query: 496  AEFLNSYFSKL----SLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPP 551
               LNSY  ++    +L   +L S ++   +E        I +V+E+ DVFP+D+PG+PP
Sbjct: 740  ---LNSYDGRVVTVPALSSESLRSRLNQITLEE-------IPIVREYPDVFPDDLPGMPP 789

Query: 552  VRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVK 611
             RD+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+
Sbjct: 790  KRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVE 849

Query: 612  KKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDED 671
            KKD   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+ED
Sbjct: 850  KKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEED 909

Query: 672  IQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLE 731
            I KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  E
Sbjct: 910  IPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKE 969

Query: 732  EHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRP 791
            EHEEHLR  L+ LRE  LYA  +K EFWL EVKFLGHVIS  G+AVDPS VE+V  W +P
Sbjct: 970  EHEEHLRLALEKLREHQLYAKFSKREFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQP 1029

Query: 792  KTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTA 851
            KTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +A
Sbjct: 1030 KTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISA 1089

Query: 852  PVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVF 911
            P+L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHD+ELAAVV 
Sbjct: 1090 PILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDIELAAVVH 1149

Query: 912  ALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVV 971
            ALKIWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVV
Sbjct: 1150 ALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVV 1209

Query: 972  ADALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQL 1030
            ADALSR+   + +      LEL + F  L+LG+    G+     +      +++++  Q+
Sbjct: 1210 ADALSRKGYCNATEGRQLPLELCKEFERLNLGI---VGRGFVAALEAKPTLIDQVREAQI 1266

Query: 1031 LDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPG 1090
             D ++ E +  +  GKA  F       +    R+CVP + +L+  IL E H +  SIHPG
Sbjct: 1267 NDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPG 1326

Query: 1091 STKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISM 1150
            STKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I M
Sbjct: 1327 STKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGM 1386

Query: 1151 DFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIV 1210
            DF+  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  IV
Sbjct: 1387 DFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIV 1446

Query: 1211 SDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWD 1270
            SDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   SWD
Sbjct: 1447 SDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWD 1506

Query: 1271 ELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQ 1330
            + LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK 
Sbjct: 1507 KNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKI 1566

Query: 1331 IQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQI 1390
            IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+I
Sbjct: 1567 IQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHRFHTKGKLAPRFVGPYKI 1626

Query: 1391 IERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRI 1450
            + R G+VAY++ LP  L+ +H+V H+SQL+K +  P+     D I+++++L++   P+RI
Sbjct: 1627 VSRRGEVAYQLELPQSLAGVHNVFHLSQLKKCLRVPTEEANLDQIEVQEDLTYVEKPIRI 1686

Query: 1451 EERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
             E   ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1687 LESNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1730


>ref|XP_476280.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|46485886|gb|AAS98511.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1678

 Score = 1303 bits (3371), Expect = 0.0
 Identities = 713/1481 (48%), Positives = 943/1481 (63%), Gaps = 65/1481 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 229  TLAQVLAQQTQLMNMMMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEASD 287

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 288  WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 346

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F+ GL+
Sbjct: 347  THIPSGVVSLKKKEFRSLSQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLGGLN 404

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +       +Q LV+K   I   D      Q + ++ Q      +T QG   K R
Sbjct: 405  DELSYPLMVGDYPDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKPR 457

Query: 270  YFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYA 321
                 P   PQG  ++        F     N I   APRP+             Q+    
Sbjct: 458  -LTLGPQPMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAP---------TQQQPAK 507

Query: 322  SHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARRPT----AGGRVYSISGTEAEE 377
                  P++C+NC  PGH A  C  P+      VV A+  +    +  RV  ++  EA++
Sbjct: 508  REQGNKPVVCFNCGDPGHYADKCPKPR---RVKVVPAQSNSTVSASKARVNHVAAAEAQD 564

Query: 378  DDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVT 437
               +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP++++L  
Sbjct: 565  APDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSL 624

Query: 438  NTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAG 494
              +    P + ++ +   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN+ V      
Sbjct: 625  QRS----PSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVT----- 675

Query: 495  LAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRD 554
                LNSY  ++       S  + + + +     ++ I +V+E+ DVFP+D+PG+PP RD
Sbjct: 676  ----LNSYDGRVVTVHALSSEFLRSRLNQIT---LEEIPIVREYPDVFPDDLPGMPPKRD 728

Query: 555  MEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKD 614
            +EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD
Sbjct: 729  IEFRIDLVPGTTPIHTRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKD 788

Query: 615  GRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQK 674
               R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI K
Sbjct: 789  HTQRMCVDYRALNDVTIKNEYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIPK 848

Query: 675  TAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHE 734
            TAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  EEHE
Sbjct: 849  TAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHE 908

Query: 735  EHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTV 794
            EHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W +PKTV
Sbjct: 909  EHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTV 968

Query: 795  TDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVL 854
            ++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +AP+L
Sbjct: 969  SEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPIL 1028

Query: 855  TLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALK 914
             LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHD+ELAAVV ALK
Sbjct: 1029 ILPDPKKGFQVYCDASKFGLGCVLMQEGKVVAYASRQLRPHEKNYPTHDIELAAVVHALK 1088

Query: 915  IWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADA 974
            IWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVADA
Sbjct: 1089 IWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVADA 1148

Query: 975  LSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDE 1033
            LSR+   + +      LEL + F  L+LG+    G+     +      +++++  Q+ D 
Sbjct: 1149 LSRKGYCNATEGRQLPLELCKEFERLNLGI---VGRGFVAALEAKPTLIDQVREAQINDP 1205

Query: 1034 ELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTK 1093
            ++ E +  +  GKA  F       +    R+CVP + +L+  IL E H +  SIHPGSTK
Sbjct: 1206 DIQEIKKKMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTK 1265

Query: 1094 MYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFV 1153
            MYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I MDF+
Sbjct: 1266 MYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFI 1325

Query: 1154 VALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDR 1213
              LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  IVSDR
Sbjct: 1326 TGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDR 1385

Query: 1214 DPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELL 1273
              +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   SWD+ L
Sbjct: 1386 GSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNL 1445

Query: 1274 PLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQE 1333
            P  EF YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK IQE
Sbjct: 1446 PYAEFLYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQE 1505

Query: 1334 KMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIER 1393
            ++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+I+ R
Sbjct: 1506 RLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSR 1565

Query: 1394 VGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEER 1453
             G+VAY++ LP  L+ +H+V HVSQL+K +  P+     + I+++++L++   P+RI E 
Sbjct: 1566 RGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIRILET 1625

Query: 1454 RIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
              ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1626 SERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1666


>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
            gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1470

 Score = 1302 bits (3369), Expect = 0.0
 Identities = 696/1473 (47%), Positives = 933/1473 (63%), Gaps = 73/1473 (4%)

Query: 59   QAAAQTRG------LNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 112
            QA A  +G        +F R  PP F+   +P +A+ WL+ +EK  T +R     KV +A
Sbjct: 34   QAIASNQGNRGGSSFGEFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVRVREADKVIFA 93

Query: 113  TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGM 172
               L G A  WW   +   E D     WE F  AF D + P +    K+ +F +LRQG  
Sbjct: 94   ANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRKLRQGNT 153

Query: 173  TVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTK 232
            TV EY  +   LA++    R   DE    ++FI+GL+ EL+  +     + +Q L+ K  
Sbjct: 154  TVQEYLNRFTQLARYAT--RDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINK-- 209

Query: 233  GIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTASGSFY-P 291
             +  ++N R   +   K       P +T   R         +P V    R  AS +F+ P
Sbjct: 210  -VVRLENDRKVVEHNRKRRLAMNRPPQTAPQRPKGTTPSAWRPTVVTTSRPAASSNFHRP 268

Query: 292  TGENAIAPRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPK--- 348
                  AP P   +   V                  P  C+NC + GH A  C  P    
Sbjct: 269  VTIQNRAPTPNQAATGSVR-----------------PGSCFNCGEYGHFANKCPHPNKTP 311

Query: 349  VEDAANVV---GARRPTAG------------------GRVYSISGTEAEEDDGLIRSTCE 387
            +   AN     G   P AG                  G+V  +   EA+ED G++     
Sbjct: 312  IRTGANATAIHGTATPAAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMFS 371

Query: 388  IAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWM 447
            +    +  LFDSGA+HSFI +  + +  L   KL   + V +P  + +  +TAC++ P  
Sbjct: 372  LNSTPVKVLFDSGASHSFISLKASQQHNLTRVKLRQPMLVHSPGGE-IAVDTACIDVPIR 430

Query: 448  YLDKKFIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIF--PDAGLAEFLNSYFSK 505
              D  F +NL+ L  + LDVI+GMDWL+ H  ++DC  + V    P             +
Sbjct: 431  LRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPWGSDMRATMDQDPR 490

Query: 506  LSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGT 565
            L+ R G + +++           ++G+ +VQ F DVFPED+PG+PP RD+EF ID++PGT
Sbjct: 491  LTERAGGIFTMLP----------LKGMPIVQRFPDVFPEDLPGMPPDRDIEFIIDLIPGT 540

Query: 566  GPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQ 625
             PIS  PYRM   EL ELK Q+ +L +KGF+RPS SPWGA VL VKKKDG  R+CVDYR 
Sbjct: 541  APISKRPYRMPVNELEELKKQIRELQEKGFVRPSSSPWGAQVLFVKKKDGSMRMCVDYRS 600

Query: 626  LNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYE 685
            LN+VTIKN YPLPRID+L DQLKGA +FSKIDLRSGYHQ++++ EDI KTAF TRYG YE
Sbjct: 601  LNEVTIKNKYPLPRIDNLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYE 660

Query: 686  YLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLR 745
            + VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYS++ EEH EHLR VLQ LR
Sbjct: 661  FTVMSFGLTNAPAYFMNLMNKVFMEYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLR 720

Query: 746  EKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAG 805
            +  LYA  +KCEFWL+EV FLGHVIS  G+AVDP+KVE V  W  PK+VT+IRSF+GLA 
Sbjct: 721  KHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAR 780

Query: 806  YYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEV 865
            YYRRFIEGF+KIA P+T+L +K + F W+E C++SF+ +KE+LT+AP+L LP   + + +
Sbjct: 781  YYRRFIEGFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVI 840

Query: 866  YCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTF 925
            YCDAS QGLG VLMQ  K VAY+SRQL+ HE NYPTHDLELAAVV ALKIWRHYL G+  
Sbjct: 841  YCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYLIGNHC 900

Query: 926  TVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADALSRQTIHVSSL 985
             +++DHKSLKY+F Q DLN+RQRRW+E IKDYD  + YHPGKANVVADALSR+ IH + L
Sbjct: 901  DIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGKANVVADALSRK-IHCNHL 959

Query: 986  MIKEL--ELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLII 1043
             ++ +  EL E    L+L + V  G+++   + I      +I+  Q  +EE+ E +  + 
Sbjct: 960  RMEGMVPELREEIAQLNLHI-VPRGQIN--TLDIQPLLRTQIEEAQKDNEEVREVKERLA 1016

Query: 1044 LGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFW 1103
             G+A +F     ++L  K R+ VP    LR +IL E H+S  S+HPGSTKMYQDLK  +W
Sbjct: 1017 AGRAKEFSTDEKDVLWYKKRIYVPEQGGLRGLILKEAHESAYSLHPGSTKMYQDLKEGYW 1076

Query: 1104 WPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRF 1163
            WP MK++VAEYVA C  CQK K EHQ+PAG+LQ L +PEWKWD I MDF+V LP T   +
Sbjct: 1077 WPNMKRDVAEYVALCDVCQKVKAEHQRPAGLLQPLRIPEWKWDEIGMDFIVGLPKTATGY 1136

Query: 1164 DSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWK 1223
            DSIWVIVDRLTK+A FIPVKT ++   LA++Y+  IV LHGVP  I+SDR  +FTSHFW+
Sbjct: 1137 DSIWVIVDRLTKTARFIPVKTNYSSAKLAELYMTRIVCLHGVPKKIISDRGTQFTSHFWE 1196

Query: 1224 ALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNS 1283
             +HEALG+ L  S+AYHPQTDGQTERT Q LED+LRAC LD  + W+  LP  EF+YNNS
Sbjct: 1197 KVHEALGSYLAFSTAYHPQTDGQTERTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNS 1256

Query: 1284 FHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQK 1343
            F AS+ M+P EAL+GRRCRTPL W + GE  + GP+++Q+  EKV+ I+++++ +QSRQK
Sbjct: 1257 FQASLKMSPNEALFGRRCRTPLMWSETGERAVFGPDIIQEAEEKVRLIRDRLKIAQSRQK 1316

Query: 1344 SYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIAL 1403
            SYADTRRR LEF+ GD+++L+V+P  G  R     KL P+++GP+QII R G+VAY++ L
Sbjct: 1317 SYADTRRRNLEFKEGDYIYLKVSPMRGTKRFKVKGKLAPRYVGPFQIIARRGEVAYQLQL 1376

Query: 1404 PPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQV 1463
            P  ++ +H V HVSQL+K +  P      +++ + ++L++   P+RI +   K+ R+K  
Sbjct: 1377 PENIADVHPVFHVSQLKKCLRVPEEQAPLEEVHISNDLTYPEHPIRILDEAAKRTRSKVW 1436

Query: 1464 PLVKVIW-NQVTGDATWELEEKMKEQYPELFTE 1495
             + KV W N    +ATWE EE ++ +YP LF +
Sbjct: 1437 RMYKVQWSNHTEEEATWESEEFLRTEYPHLFED 1469


>gb|AAP52698.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37532218|ref|NP_920411.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
            gi|19225021|gb|AAL86497.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1722

 Score = 1301 bits (3368), Expect = 0.0
 Identities = 723/1486 (48%), Positives = 951/1486 (63%), Gaps = 75/1486 (5%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 273  TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPTFSSTTNPVEAGD 331

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 332  WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 390

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA +        +E    E+F++GL+
Sbjct: 391  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLACYAPEDVRNDEERQ--EKFLEGLN 448

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +     + +Q LV+K   I   D      Q + ++ Q      +T QG   + R
Sbjct: 449  DELSYPLMTGDYSDFQKLVDKA--IRQEDKYNRMEQKKRRMAQ-----FKTQQGNNQRPR 501

Query: 270  YF---QKKPY------VRPQGRGTASGSFYPTGENAI---APRPLGVSLDGVTCFKCNQK 317
                 Q  P+      VRPQ +      F     N I   APRP+ V           Q+
Sbjct: 502  LTLGPQSMPHGGSSSVVRPQRQ-----FFNNNAGNNIRNQAPRPVAVP---------TQQ 547

Query: 318  GHYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARR----PTAGGRVYSISGT 373
                      P++C+NC  PGH A  C  P+      VV A+     P +  RV  ++  
Sbjct: 548  QPAKREQGSKPVVCFNCGDPGHYADKCPKPR---RVKVVPAQSNSAVPASKARVNHVAAA 604

Query: 374  EAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASK 433
            EA++   +I  T  +       LFDSG THSF+ ++ A    +EV  L   L VSTP+++
Sbjct: 605  EAQDAPDVILGTFLVNSVPTTVLFDSGVTHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQ 664

Query: 434  SLVTNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVI 489
            +L    +    P + ++ K   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN KV +
Sbjct: 665  ALSLQRS----PSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTL 720

Query: 490  FPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGI 549
              + G    +++  S+ SLR    S L   T+ E        I +VQE+ DVFP+D+PG+
Sbjct: 721  TSNDGRVVTVHALSSE-SLR----SRLNQITLEE--------IPIVQEYPDVFPDDLPGM 767

Query: 550  PPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLL 609
            PP RD+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ 
Sbjct: 768  PPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIF 827

Query: 610  VKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKD 669
            V+KKD   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+
Sbjct: 828  VEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKE 887

Query: 670  EDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRN 729
            EDI KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR 
Sbjct: 888  EDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRT 947

Query: 730  LEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWD 789
             EEHEEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W 
Sbjct: 948  KEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWK 1007

Query: 790  RPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLT 849
            +PKTV++IRSF+GLAGYYRRFIE F+KIA P T+L +K+  + W+E+CEQSFQ++K RL 
Sbjct: 1008 QPKTVSEIRSFLGLAGYYRRFIENFSKIARPRTRLLQKDVKYKWSEECEQSFQELKNRLI 1067

Query: 850  TAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAV 909
            +AP+L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHDLELAAV
Sbjct: 1068 SAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAV 1127

Query: 910  VFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKAN 969
            V ALKIWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IK+YD  + YHPGKAN
Sbjct: 1128 VHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKEYDMGIHYHPGKAN 1187

Query: 970  VVADALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVK 1028
            VVADALSR+   + +      LEL + F  L+LG+ V+ G ++   +      +++++  
Sbjct: 1188 VVADALSRKGYCNATEGRQLPLELCKEFERLNLGI-VSRGFVA--TLEAKPTLIDQVREA 1244

Query: 1029 QLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIH 1088
            Q+ D ++ E +  +  GKA  F       +    R+CVP + +L+  IL E H +  SIH
Sbjct: 1245 QINDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIH 1304

Query: 1089 PGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSI 1148
            PGSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I
Sbjct: 1305 PGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEI 1364

Query: 1149 SMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSS 1208
             MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  
Sbjct: 1365 GMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKK 1424

Query: 1209 IVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQES 1268
            IVSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   S
Sbjct: 1425 IVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGS 1484

Query: 1269 WDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKV 1328
            WD+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKV
Sbjct: 1485 WDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAKEKV 1544

Query: 1329 KQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPY 1388
            K IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY
Sbjct: 1545 KIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPY 1604

Query: 1389 QIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPM 1448
            +I+ R G+VAY++ LP  L+ +H+V HVSQL+K +  P      + I+++++L++   P+
Sbjct: 1605 KIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPIEEANLEQIEVQEDLTYVEKPI 1664

Query: 1449 RIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
            RI E   ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1665 RIMEIDERKTRNRVIRFCKVQWGNHSEEESTWEREDELKSAHPHLF 1710


>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
            gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1470

 Score = 1301 bits (3367), Expect = 0.0
 Identities = 702/1459 (48%), Positives = 934/1459 (63%), Gaps = 49/1459 (3%)

Query: 59   QAAAQTRG------LNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 112
            QA A  +G        +F R  PP F+   +P EA+ WL+ +EK  T +R     KV +A
Sbjct: 34   QAIASNQGNRGGSSFGEFMRTKPPTFATADEPMEAEDWLRIIEKKLTLVRVREADKVIFA 93

Query: 113  TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGM 172
               L G A  WW   +   E      TWE F  AF + + P +    K+ +F RLRQG  
Sbjct: 94   VNQLEGPAGDWWDTYKEAREDGAGEPTWEEFTVAFRENFVPAAVMRMKKNEFRRLRQGNT 153

Query: 173  TVAEYAYKLESLAKHFRYFRGQI-DEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKT 231
            TV EY  K   LA   RY  G + DE    ++FI+GL+ EL+  +       +Q L+ K 
Sbjct: 154  TVQEYLNKFTQLA---RYAIGDLADEEEKIDKFIEGLNDELRGPMIGQDHESFQSLINKV 210

Query: 232  KGIE----AIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTASG 287
              +E     +++ R +    ++L Q    P R  +G    G     KP V    R  A  
Sbjct: 211  VRLENDQRTVEHNRKRRLAMSRLPQTV--PQRL-KGATPSG----WKPPVMVTNRPAALS 263

Query: 288  SF-YPTGENAIAPRPLGV---SLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARD 343
            +F  P       P P      +   V CF C + GHYA++CP                R 
Sbjct: 264  NFNRPVALQNRTPTPTLAAPGAKKNVDCFNCGEYGHYANNCPHPRKTPIRTGANAMTVRG 323

Query: 344  CRIPKV-EDAANVVGARRPTAG---GRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDS 399
               P V         + R T G   G+V  +   EA+ED G++     I    +  LFDS
Sbjct: 324  TTTPAVGRGLFKTPQSNRTTTGFGRGQVNHVRAEEAQEDQGVLMGMFSINSTPVKVLFDS 383

Query: 400  GATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKKFIANLIC 459
            GA+HSFI +  + +  L +  L   + V +P  +  V++ AC++ P    D  F +NL+ 
Sbjct: 384  GASHSFISLKASQKHNLTLVGLRKPMIVHSPGGEITVSH-ACIDVPIRLRDVVFPSNLMV 442

Query: 460  LPLKGLDVIIGMDWLSHHHVLLDCANKVVIF--PDAGLAEFLNSYFSKLSLRKGALSSLM 517
            L  + LDVI+GMDWL+ H  ++DC  + V    P             +L+ R G + +++
Sbjct: 443  LIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPWGSDMRATMDQDPRLTERAGGIFTML 502

Query: 518  STTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAP 577
                       ++G+ VVQ F DVFPED+PG+PP RD+EF ID++PGT PIS  PYRM  
Sbjct: 503  P----------LKGMPVVQRFPDVFPEDLPGMPPDRDVEFIIDLIPGTAPISKRPYRMPV 552

Query: 578  AELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPL 637
             EL ELK Q+ +L +KGF+RPS SPWGAPVL  KKKDG  R+CVDYR LN+VTIKN YPL
Sbjct: 553  NELEELKKQIRELQQKGFVRPSSSPWGAPVLFDKKKDGSMRMCVDYRSLNEVTIKNKYPL 612

Query: 638  PRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAP 697
            PRIDDL DQLKGA +FSKIDLRSGYHQ++++ EDI KTAF TRYG YE+ VM FG+TNAP
Sbjct: 613  PRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYEFTVMSFGLTNAP 672

Query: 698  AVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREKVLYANAAKCE 757
            A FM+ MN++F  +LD+FVVVFIDDILIYS++ EEH EHLR VLQ LR+  LYA  +KCE
Sbjct: 673  AYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLRKHKLYAKFSKCE 732

Query: 758  FWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKI 817
            FWL+EV FLGHVIS  G+AVDP+KVE V  W  PK+VT+IRSF+GLAGYYRRFIEGF+KI
Sbjct: 733  FWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKI 792

Query: 818  AGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDASYQGLGCV 877
            A P+T+L +K + F W+E C++SF+ +KE+LT+AP+L LP   + + +YCDAS QGLG V
Sbjct: 793  ARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGV 852

Query: 878  LMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFSDHKSLKYL 937
            LMQ  K VAY+SRQL+ HE NYPTHDLEL AVV ALKIWRHYL G+   +++DHKSLKY+
Sbjct: 853  LMQDEKVVAYASRQLRPHEENYPTHDLELVAVVHALKIWRHYLIGNHCDIYTDHKSLKYI 912

Query: 938  FDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADALSRQTIHVSSLMIKEL--ELIET 995
            F Q DLN+RQRRW+E IKDYD  + YHPGKANVVADALSR++ H + L ++ +  EL E 
Sbjct: 913  FTQSDLNLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKS-HCNHLRMEGMVPELREE 971

Query: 996  FRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLIILGKAPDFEVGTD 1055
               L+L + V  G+++   + I      +I+  Q  +EE+ E +  +  G+A +F     
Sbjct: 972  IAQLNLHI-VPRGQIN--TLDIQPLLRTQIEEAQKDNEEVREVKERLAAGRAKEFSTDEK 1028

Query: 1056 NILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGMKKNVAEYV 1115
            ++L  K R+ VP    LR +IL E H+S  S+HP STKMYQDLK  +WWP MK++VAEYV
Sbjct: 1029 DVLWYKKRIYVPEQGGLRGLILKEAHESAYSLHPRSTKMYQDLKEGYWWPNMKRDVAEYV 1088

Query: 1116 AACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIWVIVDRLTK 1175
            A C  CQK K EHQ+PAG+LQ L +PEWKWD I MDF+V LP T   +DSIWVIVDRLTK
Sbjct: 1089 ALCDVCQKVKAEHQRPAGLLQPLRIPEWKWDEIGMDFIVGLPKTATGYDSIWVIVDRLTK 1148

Query: 1176 SAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEALGTKLRL 1235
            +A FIPVKT ++   LA++Y+  IV LHGVP  I+SDR  +FTSHFW+ +HEALG+ L  
Sbjct: 1149 TARFIPVKTNYSSAKLAELYMTRIVCLHGVPKKIISDRGTQFTSHFWEKVHEALGSYLAF 1208

Query: 1236 SSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNSFHASIGMAPYEA 1295
            S+AYHPQTDGQTERT Q LED+LRAC LD  + W+  LP  EF+YNNSF AS+ M+P EA
Sbjct: 1209 STAYHPQTDGQTERTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNSFQASLKMSPNEA 1268

Query: 1296 LYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQKSYADTRRRELEF 1355
            L+GRRCRTPL W + GE  + GP+++Q+  EKV+ I+++++ +QSRQKSYADTRRR LEF
Sbjct: 1269 LFGRRCRTPLMWSETGERAVFGPDIIQEAEEKVRLIRDRLKVAQSRQKSYADTRRRNLEF 1328

Query: 1356 EAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLH 1415
            + GD+V+L+V+P  G  R     KL P+++GP+QI  R G+VAY++ LP  ++++H V H
Sbjct: 1329 KEGDYVYLKVSPMRGTKRFKVKGKLAPRYVGPFQITARRGEVAYQLQLPENIAEVHPVFH 1388

Query: 1416 VSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIW-NQVT 1474
            VSQL+K +  P      ++I + ++L++   P+RI +   K+ R+K   + KV W N   
Sbjct: 1389 VSQLKKCLRVPEEQAPLEEIHISNDLTYPEHPIRILDEAEKRTRSKVWRMYKVQWSNHTE 1448

Query: 1475 GDATWELEEKMKEQYPELF 1493
             +ATWE EE ++ +YP LF
Sbjct: 1449 AEATWESEEFLRTEYPHLF 1467


>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
            gi|37531578|ref|NP_920091.1| putative retroelement [Oryza
            sativa (japonica cultivar-group)]
          Length = 1461

 Score = 1301 bits (3366), Expect = 0.0
 Identities = 705/1469 (47%), Positives = 931/1469 (62%), Gaps = 84/1469 (5%)

Query: 52   VQREEREQAAAQTRG--------LNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRT 103
            VQ+ + +Q   Q +         L DF R  PP FS   +P EA  WL  +EK    ++ 
Sbjct: 40   VQQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPVEAGDWLHAVEKKLDLIQC 99

Query: 104  TAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQ 163
            T + KV +A++ L G A  WW   R    A  + ITW+ F  AF   + P    A K+ +
Sbjct: 100  TEQEKVSFASHQLHGPAAEWWDHFR-QGRAGGEPITWQEFTAAFKKTHIPSGVVALKKRE 158

Query: 164  FLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNR 223
            F  L QG  +V +Y +    LA +         +    E+F++GL+ EL  A+       
Sbjct: 159  FRALNQGSRSVTKYLHDFNRLACYAP--EDVCTDEERQEKFLEGLNDELSYALMSTDFRD 216

Query: 224  YQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGR- 282
            +Q LV+  K I   DN +     + +L  G   P+    G             VRPQ + 
Sbjct: 217  FQQLVD--KAIRQEDNNQ-----RPRLVTGPQVPSYPQGG---------SSSVVRPQRQF 260

Query: 283  -GTASGSFYPTGENAIAPRPLGVSLDG-----------VTCFKCNQKGHYASHCPEGPLM 330
                +G+      N +A RP    +             V CF C   GHYA  CP+ P  
Sbjct: 261  YNNNTGNRGNDNRNVVA-RPAATPVQNQPVRREQGSKPVICFNCGDPGHYADKCPK-PRR 318

Query: 331  CWNCNKPGHLARDCRIPKVEDAANVVGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAG 390
              N   P +              NV     P    RV  ++  EA+    ++  T  +  
Sbjct: 319  VKNAPAPNNF-------------NV-----PAPKARVNHVAAAEAQNAPDVVLGTFPVNS 360

Query: 391  NSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLD 450
                 LFDSGATHSF+  + A +  +EV  L   L V+TP +++  T      CP + ++
Sbjct: 361  IPATVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTR----YCPSVTIE 416

Query: 451  KK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFPDAGLAEFLNSYFSKLS 507
             +   F ++LI L  K LDVI+GMDWLS H  ++DCAN+ V    +   E ++ + S   
Sbjct: 417  IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSN-GETVSFFASSPK 475

Query: 508  LRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGP 567
                 L+ +            +Q I +VQ++ DVFPED+PG+PP RD+EF ID+VPGT P
Sbjct: 476  SHGEVLNQV-----------ALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNP 524

Query: 568  ISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLN 627
            I   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KKD   R+CVDYR LN
Sbjct: 525  IHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALN 584

Query: 628  KVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYL 687
            +VTIKN YPLPRIDDL DQL+GA +FSKIDLRSGYHQ+R+++EDI KTAF TRYG +E  
Sbjct: 585  EVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFECT 644

Query: 688  VMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREK 747
            VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYS+  EEHEEHLR  L+ LRE 
Sbjct: 645  VMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREH 704

Query: 748  VLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYY 807
             LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+VL+W +PKTV++IRSF+GLAGYY
Sbjct: 705  QLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLGLAGYY 764

Query: 808  RRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYC 867
            RRFIE F+KIA P+T+L +K+  + WTEDCEQSFQ++K+RL TAPVL LP   + ++VYC
Sbjct: 765  RRFIENFSKIARPMTRLLQKDVKYKWTEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYC 824

Query: 868  DASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTV 927
            DAS  GLGCVLMQ  K VAY+SRQL  HE NYPTHDLELAAVV ALKIWRHYL+G+   +
Sbjct: 825  DASRHGLGCVLMQEGKVVAYASRQLCPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEI 884

Query: 928  FSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADALSRQT-IHVSSLM 986
            ++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVADALSR++  ++S   
Sbjct: 885  YTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMEIHYHPGKANVVADALSRKSYCNMSEGR 944

Query: 987  IKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLIILGK 1046
                EL + F  L+LG+ V+ G ++   +       ++I+  Q+ D ++ E +  +  GK
Sbjct: 945  CLPWELCQEFERLNLGI-VSKGFVA--TLEAKPTLFDQIREAQMNDPDIQEIKKNMRRGK 1001

Query: 1047 APDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPG 1106
            A  F       +    R+CVP + EL+  I+ E H++  SIHPGSTKMYQDLKL FWW  
Sbjct: 1002 AIGFVEDEQGTVWLGERICVPENKELKNTIMKEAHETLYSIHPGSTKMYQDLKLQFWWAS 1061

Query: 1107 MKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSI 1166
            M++ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I MDF+  LP T    DSI
Sbjct: 1062 MRREIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSI 1121

Query: 1167 WVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALH 1226
            WV+VDRLTK A FIP+KTT+    LA++Y+A +V LHGVP  IVSDR  +FTS FW+ L 
Sbjct: 1122 WVVVDRLTKVAQFIPIKTTYTGHKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQ 1181

Query: 1227 EALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNSFHA 1286
              LGT+L  S+AYHPQTDGQTER  Q LED+LRACVLD   SWD+ LP  EF+YNNS+ A
Sbjct: 1182 SELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQA 1241

Query: 1287 SIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQKSYA 1346
            S+ M+P EALYGR+CRTPL W Q GE  + G +++++  EK+K IQE++R +QSRQKSYA
Sbjct: 1242 SLQMSPNEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKMKIIQERLRVAQSRQKSYA 1301

Query: 1347 DTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPF 1406
            D RRR+L FE GD+V+LRVTP  GV R     KL P+F+GP++I+ R G+VAY++ LPP 
Sbjct: 1302 DNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRRGEVAYQLELPPS 1361

Query: 1407 LSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLV 1466
            ++ IHDV HVSQL+K +  P+       I+L+++L++   P+RI E   +  RN+ +   
Sbjct: 1362 MAGIHDVFHVSQLKKCLRVPTEEADPGRIELQEDLTYVEKPVRILEVSERNTRNRVIRFC 1421

Query: 1467 KVIW-NQVTGDATWELEEKMKEQYPELFT 1494
            KV W N    ++TWE E+++K  +P LF+
Sbjct: 1422 KVQWSNHSEEESTWEREDELKSAHPHLFS 1450


>ref|XP_471545.1| OSJNBa0019J05.6 [Oryza sativa (japonica cultivar-group)]
            gi|38346421|emb|CAD40208.2| OSJNBa0019J05.6 [Oryza sativa
            (japonica cultivar-group)]
          Length = 1616

 Score = 1299 bits (3362), Expect = 0.0
 Identities = 705/1447 (48%), Positives = 934/1447 (63%), Gaps = 65/1447 (4%)

Query: 67   LNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRG 126
            L +F R  PP FS   +P EA  WL  +EK    L+ T + KV + ++ L G A  WW  
Sbjct: 203  LAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFVSHQLHGPASEWWDH 262

Query: 127  ARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAK 186
             R +     + ITW  F  AF   + P    + K+ +F  L QG  +V EY ++   LA+
Sbjct: 263  FR-LNRTTAEPITWLEFTAAFRKTHIPLGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLAR 321

Query: 187  HFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQG 246
            +        +E    E+F+ GL+ EL   +       +Q LV+K   I   D      Q 
Sbjct: 322  YAPEDVRNDEERQ--EKFLGGLNDELSYPLMVGDHPDFQKLVDKA--IRQEDKYNRMEQK 377

Query: 247  QNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTA-----SGSFYPTGENAI---A 298
            + ++ Q      +T QG   K R     P   PQG  ++        F     N I   A
Sbjct: 378  KRRIAQ-----FKTQQGNNQKPR-LTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQA 431

Query: 299  PRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIP---KVEDAANV 355
            PRP+          +  ++G+        P++C+NC  PGH A  C  P   KV  A N 
Sbjct: 432  PRPVAAPAQQQPAKR--EQGNK-------PVVCFNCGDPGHYADKCPKPRRVKVVPAQN- 481

Query: 356  VGARRPTAGGRVYSISGTEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLK 415
              +  P +  RV  ++  EA++   +I  T  +       LFDSGATHSF+ ++ A   +
Sbjct: 482  -NSAVPASKARVNHVAAAEAQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHE 540

Query: 416  LEVSKLPFDLTVSTPASKSLVTNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMD 472
            +EV  L   L VSTP++++L    +    P + ++ +   F+ANLI L  K LDVI+GMD
Sbjct: 541  MEVEDLRRPLMVSTPSNQALSLQRS----PSVKIEIQGVPFLANLILLKSKDLDVILGMD 596

Query: 473  WLSHHHVLLDCANKVVIFPDAGLAEFLNSYFSKL----SLRKGALSSLMSTTVMEAKENG 528
            WL+ H  ++DCAN+ V          LNSY  ++    +L   +L S ++   +E     
Sbjct: 597  WLARHKGVIDCANRKVT---------LNSYDGRVVTVHALSSESLRSRLNQITLEE---- 643

Query: 529  IQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLE 588
               I +V+E+ DVFP+D+PG+PP RD+EF ID+VPGT PI   PYRMA  EL E+K Q++
Sbjct: 644  ---IPIVREYPDVFPDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVD 700

Query: 589  DLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLK 648
            DL +KG+IRPS SPWGAPV+ V+KKD   R+CVDYR LN VTIKN YPLPRIDDL DQLK
Sbjct: 701  DLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLK 760

Query: 649  GAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIF 708
            GA +FSKIDLRSGYHQ+R+K+EDI KTAF TRYG ++  VM FG+TNAPA FM+ MN++F
Sbjct: 761  GATVFSKIDLRSGYHQLRIKEEDIPKTAFTTRYGLFKCTVMSFGLTNAPAFFMNLMNKVF 820

Query: 709  HPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGH 768
              +LD+FVVVFIDDILIYSR  EEHEEHLR  L+ LRE  LYA  +KCEFWL EVKFLGH
Sbjct: 821  MEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGH 880

Query: 769  VISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKN 828
            VIS  G+AVDPS VE+V  W +PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+
Sbjct: 881  VISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKD 940

Query: 829  QPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYS 888
              + W+E+CEQSFQ++K RL +AP+L LP  ++ ++VYCD S  GLGCVLMQ  K VAY+
Sbjct: 941  VKYKWSEECEQSFQELKSRLISAPILILPDPKKGFQVYCDVSKLGLGCVLMQDGKVVAYA 1000

Query: 889  SRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQR 948
            SRQL+ HE+NYPTHD+ELAAVV ALKIWRHYL+G+   V++DHKSLKY+F Q DLNMRQR
Sbjct: 1001 SRQLRPHEKNYPTHDIELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQR 1060

Query: 949  RWMEFIKDYDFTLLYHPGKANVVADALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTP 1007
            RW+E IKDYD  + YHPGKANVVADALSR+   + +      LEL + F  L+LG+    
Sbjct: 1061 RWLELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGI---V 1117

Query: 1008 GKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVP 1067
            G+     +      +++++  Q+ D ++ E +  +  GKA  F       +    R+CVP
Sbjct: 1118 GRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGKRICVP 1177

Query: 1068 LDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIE 1127
             + +L+  IL E H +  SIHPGSTKMYQDL+  FWW  MK+ +AEYVA C  CQ+ K E
Sbjct: 1178 DNKDLKDAILKEAHDTLYSIHPGSTKMYQDLRERFWWASMKREIAEYVAVCDVCQRVKAE 1237

Query: 1128 HQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFN 1187
            HQKPAG+LQ L +PEWKW+ I MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++
Sbjct: 1238 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYS 1297

Query: 1188 VEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQT 1247
               LA++Y+A IV LHGVP  IVSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQT
Sbjct: 1298 GSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQT 1357

Query: 1248 ERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCW 1307
            ER  Q LED+LRAC LD   SWD+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W
Sbjct: 1358 ERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1417

Query: 1308 FQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTP 1367
             Q GE  + G +++++  EKVK IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP
Sbjct: 1418 DQTGERQVFGTDILREAEEKVKVIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTP 1477

Query: 1368 TTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPS 1427
              GV R     KL P+F+GPY+I  R G+VAY++ LP  L+ +H+V HVSQL+K +  P+
Sbjct: 1478 LRGVHRFHTKGKLAPRFVGPYKIASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPT 1537

Query: 1428 HIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMK 1486
                 + I+++++L++   P+RI E   ++ RN+ +   KV W N    ++TWE E+++K
Sbjct: 1538 EEANIEQIEVQEDLTYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELK 1597

Query: 1487 EQYPELF 1493
              +P LF
Sbjct: 1598 SAHPHLF 1604


>gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|37531192|ref|NP_919898.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
            gi|20177640|gb|AAM14695.1| Putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1680

 Score = 1296 bits (3353), Expect = 0.0
 Identities = 713/1486 (47%), Positives = 946/1486 (62%), Gaps = 75/1486 (5%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 231  TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEAGD 289

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 290  WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 348

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F++GL+
Sbjct: 349  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLEGLN 406

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +     + +Q LV+K   I   D      Q + ++        +  QG   K R
Sbjct: 407  DELSYPLMTEDYSDFQKLVDKA--IHQEDKYNRMEQKKRRIAH-----FKAQQGNNQKPR 459

Query: 270  YF---QKKPY------VRPQGRGTASGSFYPTGENAI---APRPLGVSLDGVTCFKCNQK 317
                 Q  P+      VRPQ +      F     N I   APRP+  S          Q+
Sbjct: 460  LTLGPQSMPHGGSSSVVRPQHQ-----FFNNNAGNNIRNQAPRPVAAS---------TQQ 505

Query: 318  GHYASHCPEGPLMCWNCNKPGHLARDCRIPK-VEDAANVVGARRPTAGGRVYSISGTEAE 376
                      P++C+NC  PGH A  C  P+ V+       +  P +  RV  ++  EA+
Sbjct: 506  QPAKREQGSKPVVCFNCGDPGHYADKCPKPRHVKVVPAQSNSAVPASKARVNHVAAAEAQ 565

Query: 377  EDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLV 436
            +   +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP++++L 
Sbjct: 566  DAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRCPLMVSTPSNQALS 625

Query: 437  TNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPD 492
               +    P + ++ +   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN KV +  +
Sbjct: 626  LQRS----PSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN 681

Query: 493  AGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPV 552
             G    +++  S+       L S ++   +E        I +V+ + DVFP+D+PG+PP 
Sbjct: 682  DGRVVTVHALSSEF------LRSRLNQITLEE-------IPIVRGYPDVFPDDLPGMPPK 728

Query: 553  RDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKK 612
            RD+EF  D+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+K
Sbjct: 729  RDIEFRKDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEK 788

Query: 613  KDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDI 672
            KD   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI
Sbjct: 789  KDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDI 848

Query: 673  QKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEE 732
             KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYS+  EE
Sbjct: 849  PKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEE 908

Query: 733  HEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPK 792
            HEEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W +PK
Sbjct: 909  HEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPK 968

Query: 793  TVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAP 852
            TV++IRSF+GLAGYYR+FIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +AP
Sbjct: 969  TVSEIRSFLGLAGYYRKFIENFSKIAKPMTRLFQKDVKYKWSEECEQSFQELKNRLISAP 1028

Query: 853  VLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFA 912
            +L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHDLELAAVV A
Sbjct: 1029 ILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHA 1088

Query: 913  LKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVA 972
            LKIWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVA
Sbjct: 1089 LKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVA 1148

Query: 973  DALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITS---DFLNEIKVK 1028
            DALSR+   + +      LEL + F  L+LG+      +S G V         +++++  
Sbjct: 1149 DALSRKGYCNATEGRQLPLELCKEFERLNLGI------VSIGFVAALEAKPTLIDQVREA 1202

Query: 1029 QLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIH 1088
            Q  D ++ E +  +  GKA  F       +    R+CVP + +L+  IL E H +  SIH
Sbjct: 1203 QTNDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTLYSIH 1262

Query: 1089 PGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSI 1148
            PGSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I
Sbjct: 1263 PGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEI 1322

Query: 1149 SMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSS 1208
             MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  
Sbjct: 1323 GMDFITGLPKTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKK 1382

Query: 1209 IVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQES 1268
            IVSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   S
Sbjct: 1383 IVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGS 1442

Query: 1269 WDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKV 1328
            WD+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKV
Sbjct: 1443 WDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKV 1502

Query: 1329 KQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPY 1388
            K IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY
Sbjct: 1503 KIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLVPRFVGPY 1562

Query: 1389 QIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPM 1448
            +I+ R G+VAY++ LP  L+++H+V HVSQL+K +  P+     + I+++++L++   P+
Sbjct: 1563 KIVSRRGEVAYQLELPQSLAEVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPI 1622

Query: 1449 RIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
            RI E   ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1623 RILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1668


>emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar-group)]
            gi|50921971|ref|XP_471346.1| OSJNBa0017P10.9 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1752

 Score = 1295 bits (3352), Expect = 0.0
 Identities = 719/1485 (48%), Positives = 947/1485 (63%), Gaps = 74/1485 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 304  TLAQVLAQQAQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPIFSSTTNPVEAGD 362

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 363  WLHTIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 421

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F++GL+
Sbjct: 422  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLEGLN 479

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +     + +Q LV+K   I   D      Q + ++ Q      +  QG   + R
Sbjct: 480  DELSYPLMTGDYHDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKVRQGNNQRPR 532

Query: 270  YFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYA 321
                 P   PQG  ++        F     N I   APRP+             Q+    
Sbjct: 533  -LTLGPQPMPQGGSSSVVHPQRQFFNNNAGNNIRNQAPRPVAAP---------TQQQPVK 582

Query: 322  SHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARR----PTAGGRVYSISGTEAEE 377
                  P++C+NC  PGH A  C  P+      VV A+     P    RV  ++  EA++
Sbjct: 583  REQGSKPVVCFNCGDPGHYADKCPKPR---RVKVVPAQSNSTVPAPKARVNHVAAAEAQD 639

Query: 378  DDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVT 437
               +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP++++L  
Sbjct: 640  APDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSL 699

Query: 438  NTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPDA 493
              +    P + ++ +   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN KV +  + 
Sbjct: 700  QRS----PSVRIEIQGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSND 755

Query: 494  GLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVR 553
            G    +++  S+ SLR    S L   T+ E        I VV+E+ DVFP+D+PG+PP R
Sbjct: 756  GRVVTVHALSSE-SLR----SRLNQITLEE--------IPVVREYPDVFPDDLPGMPPKR 802

Query: 554  DMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKK 613
            D+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KK
Sbjct: 803  DIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKK 862

Query: 614  DGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQ 673
            D   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI 
Sbjct: 863  DHTQRMCVDYRTLNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIP 922

Query: 674  KTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEH 733
            KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  EEH
Sbjct: 923  KTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEH 982

Query: 734  EEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKT 793
            EEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W +PKT
Sbjct: 983  EEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISA-GVAVDPSNVESVTNWKQPKT 1041

Query: 794  VTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPV 853
             ++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +AP+
Sbjct: 1042 ASEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPI 1101

Query: 854  LTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFAL 913
            L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHDLELAAVV AL
Sbjct: 1102 LILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHAL 1161

Query: 914  KIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVAD 973
            KIWR+YL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVAD
Sbjct: 1162 KIWRYYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVAD 1221

Query: 974  ALSRQTI-HVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITS---DFLNEIKVKQ 1029
            ALSR+   + +      LEL + F  L+LG+      +S G V         +++++  Q
Sbjct: 1222 ALSRKGYCNATEGRQLPLELCKEFERLNLGI------VSRGFVAALEAKPTLIDQVREAQ 1275

Query: 1030 LLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHP 1089
            + D +++E +  +  GKA  F       +    R+CVP + +L+  IL E H +  SIHP
Sbjct: 1276 INDPDILEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKETHDTLYSIHP 1335

Query: 1090 GSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSIS 1149
            GSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I 
Sbjct: 1336 GSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIG 1395

Query: 1150 MDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSI 1209
            MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  I
Sbjct: 1396 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1455

Query: 1210 VSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESW 1269
            VSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC LD   SW
Sbjct: 1456 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSW 1515

Query: 1270 DELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVK 1329
            D+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK
Sbjct: 1516 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVK 1575

Query: 1330 QIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQ 1389
             IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+
Sbjct: 1576 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 1635

Query: 1390 IIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMR 1449
            I+ R G+VAY++ LP  L+ +H+V HVSQL+K +  P+     + I+++++L++   P+ 
Sbjct: 1636 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIH 1695

Query: 1450 IEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
            I E   ++ RN+ +   KV W N    ++TWE EE++K  +P LF
Sbjct: 1696 ILEIDERRTRNRVIRFCKVQWSNHSEEESTWEREEELKSAHPHLF 1740


>gb|AAQ56471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|34015262|gb|AAQ56454.1| putative polyprotein [Oryza
            sativa (japonica cultivar-group)]
          Length = 1735

 Score = 1295 bits (3351), Expect = 0.0
 Identities = 717/1482 (48%), Positives = 946/1482 (63%), Gaps = 67/1482 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 286  TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPIFSSTTNPVEAGD 344

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 345  WLHAIEKKLDLLQCTDQEKVSFASHQLHGSASEWWDHFR-LNRTTAEPITWLEFTAAFRK 403

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F+ GL+
Sbjct: 404  THIPSRVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLGGLN 461

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +       +Q LV+K   I   D      Q + ++        +  QG   K R
Sbjct: 462  DELSYPLMVGDYPDFQKLVDKA--IRQEDKYNCMEQRKRRIAH-----FKAQQGSNQKPR 514

Query: 270  YFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYA 321
             F   P   PQG  ++        F     N I   APRP+             Q+    
Sbjct: 515  -FTLGPQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAP---------TQQQPAK 564

Query: 322  SHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARR----PTAGGRVYSISGTEAEE 377
                  P++C+NC  PGH A  C  P+      VV A+     P +  RV  ++  EA++
Sbjct: 565  REQGSKPVVCFNCGDPGHYADKCPKPR---RVKVVPAQSNSAVPASKARVNHVAAAEAQD 621

Query: 378  DDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVT 437
               +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP++++L  
Sbjct: 622  APDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSNQALSL 681

Query: 438  NTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPDA 493
              +    P + ++ K   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN KV +  + 
Sbjct: 682  QRS----PSVRIEIKGVPFVANLILLESKDLDVILGMDWLARHRGVIDCANRKVTLTSND 737

Query: 494  GLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVR 553
            G    +++  S+ SLR    S L   T+ E        I +V+E+ DVFP+D+PG+PP R
Sbjct: 738  GRVVTVHALSSE-SLR----SRLNQITLEE--------IPIVREYPDVFPDDLPGMPPKR 784

Query: 554  DMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKK 613
            D+EF ID+VPGT PI   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KK
Sbjct: 785  DIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKK 844

Query: 614  DGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQ 673
            D   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ+R+K+EDI 
Sbjct: 845  DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIKEEDIP 904

Query: 674  KTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEH 733
            KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  EEH
Sbjct: 905  KTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEH 964

Query: 734  EEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKT 793
            EEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE+V  W +PKT
Sbjct: 965  EEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKT 1024

Query: 794  VTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPV 853
            V++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +AP+
Sbjct: 1025 VSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKSRLISAPI 1084

Query: 854  LTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFAL 913
            L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHDLELAAVV AL
Sbjct: 1085 LILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHAL 1144

Query: 914  KIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVAD 973
            KIW HYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVAD
Sbjct: 1145 KIWCHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIHYHPGKANVVAD 1204

Query: 974  ALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLD 1032
            ALSR+   + +      LEL + F  L+LG+ V+ G ++   +      +++++  Q+ D
Sbjct: 1205 ALSRKGYCNATEGRQLPLELCKEFERLNLGI-VSRGFVA--ALEAKPTLIDQVREAQIND 1261

Query: 1033 EELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGST 1092
             ++ E +  +  GKA  F       +    R+CVP + +L+  IL E H +  SIHPGST
Sbjct: 1262 PDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGST 1321

Query: 1093 KMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDF 1152
            K+YQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I MDF
Sbjct: 1322 KVYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDF 1381

Query: 1153 VVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSD 1212
            +  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  IVSD
Sbjct: 1382 ITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSD 1441

Query: 1213 RDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDEL 1272
            R  +FTS+FWK L E + +KL  S+AYHPQTDGQTER  Q LED+LRAC LD   SWD+ 
Sbjct: 1442 RGSQFTSNFWKKLQEEMVSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKN 1501

Query: 1273 LPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQ 1332
            LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK IQ
Sbjct: 1502 LPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQ 1561

Query: 1333 EKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIE 1392
            E++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+I+ 
Sbjct: 1562 ERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHRFHTKGKLAPRFVGPYKIVS 1621

Query: 1393 RVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEE 1452
            R G+VAY++ LP  L+ +H+V HVSQL+K +  P+     + I+++++L++   P+RI  
Sbjct: 1622 RRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIRILA 1681

Query: 1453 RRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
               ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1682 TSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1723


>gb|AAP53838.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
            gi|37534498|ref|NP_921551.1| putative gag-pol protein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1470

 Score = 1294 bits (3348), Expect = 0.0
 Identities = 696/1473 (47%), Positives = 929/1473 (62%), Gaps = 73/1473 (4%)

Query: 59   QAAAQTRG------LNDFKRQDPPKFSGGFDPEEADLWLQELEKIFTFLRTTAEMKVDYA 112
            QA A  +G        +F R  PP F+   +P +A+ WL+ +EK  T +R     KV +A
Sbjct: 34   QAIANNQGNRGGLSFGEFMRTKPPTFATAEEPMDAEDWLRIIEKKLTLVRVREADKVIFA 93

Query: 113  TYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSARAAKEAQFLRLRQGGM 172
               L G A  WW   +   E D     WE F  AF D + P +    K+ +F RLRQG  
Sbjct: 94   ANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNT 153

Query: 173  TVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLSYELQRAVQPLGLNRYQVLVEKTK 232
            TV EY  +   LA++    R   DE    ++FI+GL+ EL+  +     + +Q L+ K  
Sbjct: 154  TVQEYLNRFTQLARYAT--RDLADEEEKIDKFIEGLNDELRGPMIGQDHDSFQSLINK-- 209

Query: 233  GIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGRYFQKKPYVRPQGRGTASGSFY-P 291
             +  ++N R   +   K         +T   R         +P V    R  AS +F+ P
Sbjct: 210  -VVRLENDRKVVEHNRKRRLAMNRTPQTAPQRPKWTTSSAWRPTVVTTSRPAASSNFHRP 268

Query: 292  TGENAIAPRPLGVSLDGVTCFKCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKVE- 350
                  AP P   +   V                  P  C+NC + GH A  C  P    
Sbjct: 269  VTIQNRAPAPNQAATGSVR-----------------PGSCFNCGEYGHFANKCPHPNKTP 311

Query: 351  -----DAANVVGARRPTAG------------------GRVYSISGTEAEEDDGLIRSTCE 387
                 +A  + G   P AG                  G+V  +   EA+ED G++     
Sbjct: 312  IRTGTNATAIHGTATPAAGRGLFRTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMFS 371

Query: 388  IAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVTNTACLECPWM 447
            +    +   FDSGA+HSFI +  + +  L   KL   + V +P  + +  +TAC++ P  
Sbjct: 372  LNSTPVKVPFDSGASHSFISLKASQQHNLTRVKLRQPMLVHSPGGE-IAVDTACIDVPIR 430

Query: 448  YLDKKFIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIF--PDAGLAEFLNSYFSK 505
              D  F +NL+ L  + LDVI+GMDWL+ H  ++DC  + V    P             +
Sbjct: 431  LRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTTPWGSDMRATMDQDPR 490

Query: 506  LSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVRDMEFTIDIVPGT 565
            L+ R G + +++           ++G+ VVQ F DVFPED+PG+PP RD+EF ID++PGT
Sbjct: 491  LTERAGGIFTMLP----------LKGMPVVQRFPDVFPEDLPGMPPDRDIEFIIDLIPGT 540

Query: 566  GPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKKDGRSRLCVDYRQ 625
             PIS  PYRM   EL ELK Q+ +L +KGF+RPS SPWGAPVL VKKKD   R+CVDYR 
Sbjct: 541  APISKRPYRMPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDSSMRMCVDYRS 600

Query: 626  LNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQKTAFRTRYGHYE 685
            LN+VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGYHQ++++ EDI KTAF TRYG YE
Sbjct: 601  LNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYGLYE 660

Query: 686  YLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEHEEHLRQVLQVLR 745
            + VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYS++ EEH EHLR VLQ LR
Sbjct: 661  FTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHAEHLRLVLQKLR 720

Query: 746  EKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKTVTDIRSFIGLAG 805
            +  LYA  +KCEFWL+EV FLGHVIS  G+AVDP+KVE V  W  PK+VT+IRSF+GLA 
Sbjct: 721  KHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAE 780

Query: 806  YYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPVLTLPQEEEPYEV 865
            YYRRFIE F+KIA P+T+L +K + F W+E C++SF+ +KE+LT+AP+L LP   + + +
Sbjct: 781  YYRRFIEWFSKIARPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVI 840

Query: 866  YCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGSTF 925
            YCDAS QGLG VLMQ  K VAY+SRQL+ HE NYPTHDLELAAVV ALKIWRHYL G+  
Sbjct: 841  YCDASRQGLGGVLMQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYLIGNHC 900

Query: 926  TVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVADALSRQTIHVSSL 985
             +++DHKSLKY+F Q DLN+RQRRW+E IKDYD  + YHPGKANVVADALSR++ H + L
Sbjct: 901  DIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKS-HCNHL 959

Query: 986  MIKEL--ELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKVKQLLDEELIEKRNLII 1043
             ++ +  EL E    L+L + V  G+++   + I      +I+  Q  +EE+ E +  + 
Sbjct: 960  RMEGMVPELREEIAQLNLHI-VPHGQIN--TLDIQPLLRTQIEEAQKDNEEVREVKERLA 1016

Query: 1044 LGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHPGSTKMYQDLKLNFW 1103
             G+A +F     N+L  K R+ VP    LR +IL E H+S  S+HPGSTKMYQDLK  +W
Sbjct: 1017 AGRAKEFSTDEKNVLWYKKRIYVPEQGGLRGLILKEAHESAYSLHPGSTKMYQDLKEGYW 1076

Query: 1104 WPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSISMDFVVALPATRKRF 1163
            WP MK++VAEYVA C  CQK K EHQ+PAG+LQ L +PEWKWD I MDF+V LP T   +
Sbjct: 1077 WPNMKRDVAEYVALCDVCQKVKAEHQRPAGLLQPLRIPEWKWDEIGMDFIVGLPKTATGY 1136

Query: 1164 DSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSIVSDRDPKFTSHFWK 1223
            DSIWVIVDRLTK+A FIPVKT ++   LA++Y+  IV LHG+P  I+SDR  +FTSHFW+
Sbjct: 1137 DSIWVIVDRLTKTARFIPVKTNYSSAKLAELYMTRIVCLHGIPKRIISDRGTQFTSHFWE 1196

Query: 1224 ALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESWDELLPLIEFTYNNS 1283
             +HEALG+ L  S+AYHPQTDGQTERT Q LED+LRAC LD  + W+  LP  EF+YNNS
Sbjct: 1197 KVHEALGSYLTFSTAYHPQTDGQTERTNQVLEDMLRACALDFSKDWERCLPYAEFSYNNS 1256

Query: 1284 FHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVKQIQEKMRTSQSRQK 1343
            F AS+ M+P EAL+GRRCRTPL W + GE  + GP+++Q+  EKV  I+++++ +QSRQK
Sbjct: 1257 FQASLRMSPNEALFGRRCRTPLMWSETGERAVFGPDIIQEAEEKVHLIRDRLKVAQSRQK 1316

Query: 1344 SYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQIIERVGKVAYRIAL 1403
            SYADTRRR LEF+ GD+V+L+V+P  G  R     KL P+++GP+QII R G+VAY++ L
Sbjct: 1317 SYADTRRRNLEFKEGDYVYLKVSPMRGTKRFKVKGKLAPRYVGPFQIIARRGEVAYQLQL 1376

Query: 1404 PPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMRIEERRIKQLRNKQV 1463
            P  ++ +H V HVSQL+K +         ++I + ++L++   P+RI +   K+ R+K  
Sbjct: 1377 PENIADVHPVFHVSQLKKCLRVSEEQAPLEEIHISNDLTYPKHPIRILDEAEKRTRSKVW 1436

Query: 1464 PLVKVIWNQVTGD-ATWELEEKMKEQYPELFTE 1495
             + KV W+  T D ATWE EE ++ +YP LF +
Sbjct: 1437 HMYKVQWSNHTEDEATWESEEFLRTEYPHLFED 1469


>emb|CAD40358.2| OSJNBa0093P23.4 [Oryza sativa (japonica cultivar-group)]
            gi|50922619|ref|XP_471670.1| OSJNBa0041M21.9 [Oryza
            sativa (japonica cultivar-group)]
            gi|38343985|emb|CAD40451.2| OSJNBa0041M21.9 [Oryza sativa
            (japonica cultivar-group)]
          Length = 1543

 Score = 1293 bits (3347), Expect = 0.0
 Identities = 714/1485 (48%), Positives = 946/1485 (63%), Gaps = 73/1485 (4%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +  EA  
Sbjct: 98   TLAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPIFSSTTNLVEAGD 156

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 157  WLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITWLEFTAAFRK 215

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F++GL+
Sbjct: 216  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQ--EKFLEGLN 273

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNARGKFQGQNKLNQGSGGPARTNQGRGDKGR 269
             EL   +     + +Q LV+K   I   D      Q + ++ Q      +T QG   K R
Sbjct: 274  DELSYPLMTGDYSDFQKLVDKA--IRQEDKYNRMEQKKRRIAQ-----FKTQQGNNQKPR 326

Query: 270  YFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKGHYA 321
                 P   PQG  ++        F     N I   APRP+             Q+    
Sbjct: 327  -LTLGPQSVPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAP---------TQQQPAK 376

Query: 322  SHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARR----PTAGGRVYSISGTEAEE 377
                  P++C+NC  PGH A  C  P+      VV A+     P +  RV  ++  EA++
Sbjct: 377  REQGSKPVVCFNCGDPGHYADKCPKPR---RVKVVPAQSNSTVPASKARVNHVAAAEAQD 433

Query: 378  DDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKSLVT 437
               +I  T  +       LFDSGATHSF+ ++      +EV  L   L VSTP++++L  
Sbjct: 434  APDVILGTFLVNSVPATVLFDSGATHSFLSMSFVGNHGMEVEDLRRPLMVSTPSNQALSL 493

Query: 438  NTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCAN-KVVIFPDA 493
              +    P + ++ +   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN KV +  + 
Sbjct: 494  QRS----PSVRIEIQGIPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSND 549

Query: 494  GLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGIPPVR 553
            G    +++  S+       L S ++   +E        I +V+E+ DVFP+D+PG+PP R
Sbjct: 550  GQVVTVHALSSEF------LRSRLNQITLEE-------IPIVREYPDVFPDDLPGMPPKR 596

Query: 554  DMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLLVKKK 613
            D+EF ID+VPGT  I   PYRMA  EL E+K Q++DL +KG+IRPS SPWGAPV+ V+KK
Sbjct: 597  DIEFRIDLVPGTTLIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKK 656

Query: 614  DGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKDEDIQ 673
            D   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA IFSKIDLRSGYHQ+R+K+EDI 
Sbjct: 657  DHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATIFSKIDLRSGYHQLRIKEEDIP 716

Query: 674  KTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRNLEEH 733
            KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYSR  EEH
Sbjct: 717  KTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEH 776

Query: 734  EEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWDRPKT 793
            EEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS VE++  W +PKT
Sbjct: 777  EEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNVESITNWKQPKT 836

Query: 794  VTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLTTAPV 853
            V++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ++K RL +AP+
Sbjct: 837  VSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQELKNRLISAPI 896

Query: 854  LTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAVVFAL 913
            L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+ HE+NYPTHDLELAAVV AL
Sbjct: 897  LILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPHEKNYPTHDLELAAVVHAL 956

Query: 914  KIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKANVVAD 973
            KIWRHYL+G+   V++DHKSLKY+F Q DLNMRQRRW+E IKDYD  + YHPGKANVVAD
Sbjct: 957  KIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMRQRRWLELIKDYDMRIHYHPGKANVVAD 1016

Query: 974  ALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITS---DFLNEIKVKQ 1029
            ALSR+   + +      LEL + F  L+LG+      +S G VT        +++++  Q
Sbjct: 1017 ALSRKGNCNATEGRQLPLELCKEFERLNLGI------VSRGFVTALEAKPTLIDQVRKAQ 1070

Query: 1030 LLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSIHP 1089
            + D ++ E +  +  GKA  F       +    ++CVP + +L+  IL E H +  SIHP
Sbjct: 1071 INDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGEKICVPDNKDLKDAILKEAHDTLYSIHP 1130

Query: 1090 GSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDSIS 1149
            GSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +PEWKW+ I 
Sbjct: 1131 GSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIG 1190

Query: 1150 MDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPSSI 1209
            MDF+  LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV LHGVP  I
Sbjct: 1191 MDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKI 1250

Query: 1210 VSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQESW 1269
            VSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q L+D+LRAC LD   SW
Sbjct: 1251 VSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILKDMLRACALDFGGSW 1310

Query: 1270 DELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEKVK 1329
            D+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++++  EKVK
Sbjct: 1311 DKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGECQVFGTDILREAEEKVK 1370

Query: 1330 QIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGPYQ 1389
             IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL P+F+GPY+
Sbjct: 1371 IIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYK 1430

Query: 1390 IIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAPMR 1449
            I+ R G+VAY++ LP  L+ +H+V HVSQL+K +  P+     + I+++++L++   P+R
Sbjct: 1431 IVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDLTYVEKPIR 1490

Query: 1450 IEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
            I E   ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1491 ILEIDERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1535


>ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultivar-group)]
            gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1473

 Score = 1293 bits (3347), Expect = 0.0
 Identities = 715/1493 (47%), Positives = 941/1493 (62%), Gaps = 89/1493 (5%)

Query: 35   TAALVAAQ-----NHAEENARRVQREEREQAAAQTRGLNDFKRQDPPKFSGGFDPEEADL 89
            T A V AQ     N   +  +  Q +    A  Q + L +F R  PP FS   +P EA  
Sbjct: 24   TLAQVLAQQTQLMNMVMQQFQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSSTTNPVEAGD 82

Query: 90   WLQELEKIFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLD 149
            WL  +EK    L+ T + KV +A++ L G A  WW   R +     + ITW  F  AF  
Sbjct: 83   WLHAIEKKLDLLQCTDQEKVSFASHQLHGSASEWWDHFR-LNRTTAEPITWLEFTAAFPK 141

Query: 150  KYFPKSARAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQIDEGYMCERFIDGLS 209
             + P    + K+ +F  L QG  +V EY ++   LA++        +E    E+F+ GL+
Sbjct: 142  THIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFYRLARYASEDVRNDEERQ--EKFLGGLN 199

Query: 210  YELQRAVQPLGLNRYQVLVEKTKGIEAIDNA---RGKFQGQNKLNQGSGGPARTNQGRGD 266
             EL   +       +Q LV+K    E   N    R +     K  QGS    R   G   
Sbjct: 200  DELSYPLMVGDYPDFQKLVDKAIRQEDKYNCMEQRKRRIAHFKAQQGSNQKPRLTLG--- 256

Query: 267  KGRYFQKKPYVRPQGRGTA-----SGSFYPTGENAI---APRPLGVSLDGVTCFKCNQKG 318
                    P   PQG  ++        F     N I   APRP+             Q+ 
Sbjct: 257  --------PQSMPQGGSSSVVRPQRQFFNNNAGNNIRNQAPRPVAAPA---------QQQ 299

Query: 319  HYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARR----PTAGGRVYSISGTE 374
                     P++C+NC  PGH A  C  P+      VV A+     PT+  RV  ++  E
Sbjct: 300  PAKREQGSKPVVCFNCGDPGHYADKCPKPR---RVKVVPAQSNSAVPTSKARVNHVAAAE 356

Query: 375  AEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPASKS 434
            A++   +I  T  +       LFDSGATHSF+ ++ A    +EV  L   L VSTP+ ++
Sbjct: 357  AQDAPDVILGTFLVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSDQT 416

Query: 435  LVTNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVIFP 491
            L    +    P + ++ K   F+ANLI L  K LDVI+GMDWL+ H  ++DCAN+ V   
Sbjct: 417  LSLQRS----PSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRRVTLT 472

Query: 492  D---------AGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVF 542
                      A  +EFL S  ++++L +                     I +V+E+ DVF
Sbjct: 473  SNDGRVVTVHALSSEFLRSRLNQITLEE---------------------IPIVREYPDVF 511

Query: 543  PEDVPGIPPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSP 602
            P+D+PG+PP RD+EF ID+VPGT PI   PYRMA  EL  +K Q++DL +KG++RPS SP
Sbjct: 512  PDDLPGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAGVKRQVDDLLQKGYVRPSSSP 571

Query: 603  WGAPVLLVKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGY 662
            WGAPV+ V+KKD   R+CVDYR LN VTIKN YPLPRIDDL DQLKGA +FSKIDLRSGY
Sbjct: 572  WGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGY 631

Query: 663  HQIRVKDEDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDD 722
            HQ+R+K+EDI KTAF TRYG +E  VM FG+TNAPA FM+ MN++F  +LD+FVVVFIDD
Sbjct: 632  HQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDD 691

Query: 723  ILIYSRNLEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKV 782
            ILIYSR  EEHEEHLR  L+ LRE  LYA  +KCEFWL EVKFLGHVIS  G+AVDPS V
Sbjct: 692  ILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISAGGVAVDPSNV 751

Query: 783  ETVLAWDRPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQ 842
            E+V  W +PKTV++IRSF+GLAGYYRRFIE F+KIA P+T+L +K+  + W+E+CEQSFQ
Sbjct: 752  ESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQKDVKYKWSEECEQSFQ 811

Query: 843  DMKERLTTAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTH 902
            ++K RL +AP+L LP  ++ ++VYCDAS  GLGCVLMQ  K VAY+SRQL+  E+NYPTH
Sbjct: 812  ELKSRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAYASRQLRPQEKNYPTH 871

Query: 903  DLELAAVVFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLL 962
            DLELAAVV ALKIWRHYL+G+   ++ DHKSLKY+F Q DLNMRQRRW+E IKDYD  + 
Sbjct: 872  DLELAAVVHALKIWRHYLFGTRTEMYPDHKSLKYIFTQPDLNMRQRRWLELIKDYDMGIH 931

Query: 963  YHPGKANVVADALSRQ-TIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDF 1021
            YHPGKANVVADALSR+   + +      LEL + F  L+LG+ V+ G ++   +      
Sbjct: 932  YHPGKANVVADALSRKGYCNATEGRQLPLELCKEFERLNLGI-VSRGFVA--ALEAKPTL 988

Query: 1022 LNEIKVKQLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGH 1081
            +++++  Q+ D ++ E +  +  GKA  F       +    R+CVP + +L+  IL E H
Sbjct: 989  IDQVREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAH 1048

Query: 1082 KSRLSIHPGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVP 1141
             +  SIHPGSTKMYQDLK  FWW  MK+ +AEYVA C  CQ+ K EHQKPAG+LQ L +P
Sbjct: 1049 DTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIP 1108

Query: 1142 EWKWDSISMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVR 1201
            EWKW+ I MDF+ +LP T    DSIWVIVDRLTK AHFIPVKTT++   LA++Y+A IV 
Sbjct: 1109 EWKWEEIGMDFITSLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVC 1168

Query: 1202 LHGVPSSIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRAC 1261
            LHGVP  IVSDR  +FTS+FWK L E +G+KL  S+AYHPQTDGQTER  Q LED+LRAC
Sbjct: 1169 LHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRAC 1228

Query: 1262 VLDSQESWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELV 1321
             LD   SWD+ LP  EF+YNNS+ AS+ MAPYEALYGR+CRTPL W Q GE  + G +++
Sbjct: 1229 ALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDIL 1288

Query: 1322 QQTTEKVKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLT 1381
            ++  EKVK IQE++R +QSR KSYAD RRR+L FE GD+V+LRVTP  GV R     KL 
Sbjct: 1289 REAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVRRFHTKGKLA 1348

Query: 1382 PKFIGPYQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNL 1441
            P+F+GPY+I+ R G+VAY++ LP  L+ +H+V HVSQL+K +  P+     + I+++++L
Sbjct: 1349 PRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDL 1408

Query: 1442 SFEVAPMRIEERRIKQLRNKQVPLVKVIW-NQVTGDATWELEEKMKEQYPELF 1493
            ++   P+RI E   ++ RN+ +   KV W N    ++TWE E+++K  +P LF
Sbjct: 1409 TYVEKPIRILEINERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1461


>gb|AAL59229.1| gag-pol [Zea mays]
          Length = 1470

 Score = 1293 bits (3345), Expect = 0.0
 Identities = 698/1489 (46%), Positives = 950/1489 (62%), Gaps = 58/1489 (3%)

Query: 38   LVAAQNHAEENARRVQREEREQAAAQTRGLN-DFKRQDPPKFSGGFDPEEADLWLQELEK 96
            L AA    ++N +++Q+ +++Q A   R  + DF    PP FS   DP +AD WL+ + K
Sbjct: 7    LTAAVQQLQQN-QQIQQPQQQQYAPPARDKHRDFMSHHPPTFSHAVDPLDADDWLKVIGK 65

Query: 97   IFTFLRTTAEMKVDYATYLLTGEAEYWWRGARAMMEADHQAITWECFRGAFLDKYFPKSA 156
                 +     KV YA+  L G A  WW    A    +   ITW+ F+  F   + P   
Sbjct: 66   KLDITQCNDREKVLYASGRLEGAASDWWDAFTAA-HPNADTITWQEFQENFRSHHIPSGI 124

Query: 157  RAAKEAQFLRLRQGGMTVAEYAYKLESLAKHFRYFRGQID-EGYMCERFIDGLSYELQRA 215
               K+ +FL L QG M+V+EY  +   L+   RY   ++D +    ERF++GL   L   
Sbjct: 125  MKLKK-EFLSLTQGNMSVSEYRDRFTQLS---RYAPEEVDTDEKRQERFLEGLIGPLNYQ 180

Query: 216  VQPLGLNRYQVLVEKTKGIEA----IDNARGKFQGQN----KLNQGSGGPART-NQG--- 263
            +Q      +Q L+ K  G+E+    + + + KFQGQ+    + N   G   R+ NQG   
Sbjct: 181  LQSHTFPNFQTLLNKAIGLESKRKELSDHKRKFQGQSSRNTRPNNAQGSQFRSGNQGGNN 240

Query: 264  --------RGDKGRYFQKKPYVRPQGRGTASGSFYPTG---ENAIAPRPLGVSLDGVTCF 312
                    +G +    Q +    PQ    + G+         N  A     V  +G  CF
Sbjct: 241  YQVQRSGQQGQRNNQSQNQQRSNPQTNQRSGGNSQNRQGGTNNTQARNNAPVQPNG--CF 298

Query: 313  KCNQKGHYASHCPEGPLMCWNCNKPGHLARDCRIPKVEDAANVVGARRPTAGGRVYSISG 372
            KC + GHYA++CP          K  +   D   P    A N   A +  + GRV  ++ 
Sbjct: 299  KCGELGHYANNCPRRNQQ--TPQKSNNQRNDQNTPARGSAQNK--APQNQSRGRVNHVTA 354

Query: 373  TEAEEDDGLIRSTCEIAGNSLIALFDSGATHSFIDIACATRLKLEVSKLPFDLTVSTPAS 432
                ED  ++     +       LFDSGA+HSFI  +   +  +    L   L +S+P  
Sbjct: 355  ESVPEDADIVYGMFLVNSIPASVLFDSGASHSFITASFVEKHNIPKYPLKRILHISSPGG 414

Query: 433  KSLVTNTACLECPWMYLDKK---FIANLICLPLKGLDVIIGMDWLSHHHVLLDCANKVVI 489
                T++    CP + +  +   F  + + L   G+DVI+G +WL     ++ CAN  ++
Sbjct: 415  DMKATHS----CPHVNIKIQGIDFTVDPVVLGSNGIDVILGCNWLKSCDGVIRCANGTIM 470

Query: 490  FPDAGLAEFLNSYFSKLSLRKGALSSLMSTTVMEAKENGIQGIAVVQEFEDVFPEDVPGI 549
                   E +     K +  KG       T +   +E  ++ I VV E+ DVFPE++PG+
Sbjct: 471  LTSPQ-GERIQVNIDKSTDEKG------KTVINHLEEKPLENIKVVCEYPDVFPEELPGM 523

Query: 550  PPVRDMEFTIDIVPGTGPISIAPYRMAPAELTELKSQLEDLTKKGFIRPSVSPWGAPVLL 609
            PP RD+EF+I+++PGT PIS  PYRM   +L ELK Q+E+L +KGFIRPS SPWGAPVL 
Sbjct: 524  PPDRDIEFSIELLPGTAPISKRPYRMDVKDLVELKKQIEELLEKGFIRPSSSPWGAPVLF 583

Query: 610  VKKKDGRSRLCVDYRQLNKVTIKNCYPLPRIDDLMDQLKGAAIFSKIDLRSGYHQIRVKD 669
            V KKDG  R+CVDYR LN+VTIKN YPLPRI+DL DQ+KGA +FSKIDLRSGYHQ++++ 
Sbjct: 584  VNKKDGSRRMCVDYRSLNEVTIKNKYPLPRIEDLFDQMKGAKVFSKIDLRSGYHQLKIRA 643

Query: 670  EDIQKTAFRTRYGHYEYLVMPFGVTNAPAVFMDYMNRIFHPFLDRFVVVFIDDILIYSRN 729
            ED+ KTAF TRYG YE+LVM FG+TNAPA FM+ MN++F  +LD+FVVVFIDDILIYS N
Sbjct: 644  EDVPKTAFTTRYGLYEFLVMSFGLTNAPAYFMNLMNKVFMEYLDQFVVVFIDDILIYSSN 703

Query: 730  LEEHEEHLRQVLQVLREKVLYANAAKCEFWLEEVKFLGHVISKEGIAVDPSKVETVLAWD 789
             E HE+HLR VLQ LR+  LYA  +KC+FWL+EV FLGH+++  GI VDP K+  +L W 
Sbjct: 704  EEAHEDHLRLVLQKLRDNQLYAKFSKCDFWLKEVAFLGHIVTDGGIKVDPGKISEILNWK 763

Query: 790  RPKTVTDIRSFIGLAGYYRRFIEGFAKIAGPLTKLTRKNQPFAWTEDCEQSFQDMKERLT 849
            +PK  + IRSF+GLAGYYRRFIEGF+K+  PLT L  K + F W E C+  F+++K+RLT
Sbjct: 764  QPKDASKIRSFLGLAGYYRRFIEGFSKLVKPLTSLLEKGKEFKWDEACQNCFEELKKRLT 823

Query: 850  TAPVLTLPQEEEPYEVYCDASYQGLGCVLMQHRKAVAYSSRQLKIHERNYPTHDLELAAV 909
            TAP+L +P   + ++VYCDAS+ GLGCVLMQ  K +AY+SRQL+ HE+NYPTHDLELAAV
Sbjct: 824  TAPILVMPDIHKGFDVYCDASHLGLGCVLMQEGKVIAYASRQLRKHEKNYPTHDLELAAV 883

Query: 910  VFALKIWRHYLYGSTFTVFSDHKSLKYLFDQKDLNMRQRRWMEFIKDYDFTLLYHPGKAN 969
            V ALKIWRHY+ G+   +F+DHKSLKY+F QK+LN+RQRRW+E IKDYD  + YHPGKAN
Sbjct: 884  VHALKIWRHYMIGNKCKIFTDHKSLKYIFTQKELNLRQRRWLELIKDYDLEIQYHPGKAN 943

Query: 970  VVADALSR--QTIHVSSLMIKELELIETFRDLSLGMQVTPGKLSFGMVTITSDFLNEIKV 1027
            VVADALSR  Q  ++++ ++ + EL      L+LG       +   ++ + S    EI+ 
Sbjct: 944  VVADALSRKGQVNNITTHLMSQ-ELCWEMERLNLGFL---NNVEATVMEVESTLEEEIRK 999

Query: 1028 KQLLDEELIEKRNLIILGKAPDFEVGTDNILRCKGRVCVPLDMELRRMILDEGHKSRLSI 1087
             Q  DE++ E + LI LGKAPDF       +  K R+CVP    LR++IL E H S  SI
Sbjct: 1000 GQESDEKIKEIKALIGLGKAPDFTEDEQGTIWFKKRICVPEIEHLRQLILREAHDSAYSI 1059

Query: 1088 HPGSTKMYQDLKLNFWWPGMKKNVAEYVAACLTCQKAKIEHQKPAGMLQSLDVPEWKWDS 1147
            HPGSTKMYQDLK  +WW G+K++VA +VA C  CQ+ K EHQ+PAG+LQ L VPEWKW+ 
Sbjct: 1060 HPGSTKMYQDLKEKYWWYGLKRDVATHVALCDVCQRVKAEHQRPAGLLQPLKVPEWKWEE 1119

Query: 1148 ISMDFVVALPATRKRFDSIWVIVDRLTKSAHFIPVKTTFNVEALAKVYVAEIVRLHGVPS 1207
            ISMDF+V LP TR  +DSIWVIVDRLTK AHFIPVKTT++   LA++Y++ IV LHGVP 
Sbjct: 1120 ISMDFIVGLPRTRDGYDSIWVIVDRLTKVAHFIPVKTTYSGAQLAELYMSRIVCLHGVPK 1179

Query: 1208 SIVSDRDPKFTSHFWKALHEALGTKLRLSSAYHPQTDGQTERTIQSLEDLLRACVLDSQE 1267
             IVSDR  +FTS FWK LHE++ TKL  SSAYHPQTDGQTERT Q LED+LRAC L    
Sbjct: 1180 KIVSDRGTQFTSRFWKRLHESMDTKLNFSSAYHPQTDGQTERTNQVLEDMLRACALKHGR 1239

Query: 1268 SWDELLPLIEFTYNNSFHASIGMAPYEALYGRRCRTPLCWFQDGEHLLVGPELVQQTTEK 1327
            SWD+ LP  EF+YNNS+ AS+ MAP+EALYGR+CRTPL W Q GE  + GPE++Q+  ++
Sbjct: 1240 SWDKSLPYAEFSYNNSYQASLKMAPFEALYGRKCRTPLYWNQTGESQVFGPEILQEAEKQ 1299

Query: 1328 VKQIQEKMRTSQSRQKSYADTRRRELEFEAGDHVFLRVTPTTGVGRAIKSRKLTPKFIGP 1387
            V+ I+E ++T+QSRQKSYAD RRREL FE GD V+L+V+P  G+ R     KL+P++IGP
Sbjct: 1300 VQIIRENLKTAQSRQKSYADNRRRELMFEVGDFVYLKVSPMRGMKRFKVKGKLSPRYIGP 1359

Query: 1388 YQIIERVGKVAYRIALPPFLSKIHDVLHVSQLRKYIPDPSHIIKEDDIQLRDNLSFEVAP 1447
            ++I+ER G+VAY++ LP  LS +HDV HVSQL+K +  P   +  +++ + ++L++   P
Sbjct: 1360 FKILERKGEVAYQLELPDRLSDVHDVFHVSQLKKCLRVPEEQLPMEELNVNEDLTYSEYP 1419

Query: 1448 MRIEERRIKQLRNKQVPLVKVIWNQVTGD-ATWELEEKMKEQYPELFTE 1495
            +RI E   +  R+K + + KV W+  + D ATWE E++++ ++P+LF+E
Sbjct: 1420 VRILETSRRITRSKVINMCKVQWSHHSEDEATWEREDELRAEFPQLFSE 1468


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,527,123,991
Number of Sequences: 2540612
Number of extensions: 109791313
Number of successful extensions: 400920
Number of sequences better than 10.0: 39544
Number of HSP's better than 10.0 without gapping: 3627
Number of HSP's successfully gapped in prelim test: 35921
Number of HSP's that attempted gapping in prelim test: 317773
Number of HSP's gapped (non-prelim): 51346
length of query: 1496
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1355
effective length of database: 505,134,102
effective search space: 684456708210
effective search space used: 684456708210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)

Lotus: description of TM0102a.7