BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0101.14
(1733 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62347.1| CTV.20 [Poncirus trifoliata] 802 0.0
gb|AAK68664.1| ORF I polyprotein [petunia vein clearing virus] g... 347 2e-93
ref|NP_917589.1| sumilar to Oryza sativa chromosome 10, OSJNBb00... 347 3e-93
ref|XP_483246.1| hypothetical protein [Oryza sativa (japonica cu... 345 6e-93
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 345 1e-92
gb|AAO67368.1| polyprotein 1 [Petunia vein clearing virus] 345 1e-92
sp|Q02964|POL_CAMVE Enzymatic polyprotein [Contains: Aspartic pr... 332 5e-89
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus] 332 9e-89
sp|P03555|POL_CAMVC Enzymatic polyprotein [Contains: Aspartic pr... 332 9e-89
gb|AAA21736.1| reverse transcriptase 331 2e-88
emb|CAA23460.1| unnamed protein product [Cauliflower mosaic viru... 330 2e-88
emb|CAH68829.1| polyprotein [Carnation etched ring virus] 328 1e-87
gb|AAW56089.1| polyprotein [Horseradish latent virus] 327 2e-87
sp|P03556|POL_CAMVD Enzymatic polyprotein [Contains: Aspartic pr... 327 3e-87
sp|Q00962|POL_CAMVN Enzymatic polyprotein [Contains: Aspartic pr... 326 4e-87
gb|AAD37341.1| reverse transcriptase [Cauliflower mosaic virus] 326 4e-87
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote... 322 5e-86
gb|AAA46350.1| ORF5; putative 321 1e-85
emb|CAA28360.1| unnamed protein product [Carnation etched ring v... 317 2e-84
gi|57547619 TPA: hypothetical protein [Rice tungro bacilliform v... 310 3e-82
>gb|AAN62347.1| CTV.20 [Poncirus trifoliata]
Length = 3148
Score = 802 bits (2071), Expect = 0.0
Identities = 428/910 (47%), Positives = 587/910 (64%), Gaps = 50/910 (5%)
Query: 701 NSLIFTIAQHFVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTFLTRVYTREDSQQAFWK 760
N+ + + Q+ GDPS ++D++ +LL NL+C+ L DF+ YK TF TR++ R+D+ WK
Sbjct: 1951 NTELQNVTQYSDGDPSHLRDKNAELLHNLRCRKLSDFQLYKTTFFTRLFLRDDANHTTWK 2010
Query: 761 EKFLAGLPKSFGDKVREKLRSQNPGGEIPYQTLSYGQLIAIIQRVALKICQDDKIQQQLT 820
EKFLA LP G+KVR +++ IPY L+YG+L++ + + LKICQD K+Q++L
Sbjct: 2011 EKFLACLPTLLGEKVRNFIKALYDN-RIPYDELTYGELVSFVNKEGLKICQDLKLQKRLK 2069
Query: 821 KEKSQNRRDLGTFCEQFGI--------QGCPKKPKPRKHDPPPKQQWRRNSSRNHDHRKP 872
+E Q++R+LG+FC+QF + C K R + K + R H
Sbjct: 2070 QEIRQSKRELGSFCKQFNYDPFKASTSKDCNGKCSSRPYKKHYKSKSHRKLFLGHRENFY 2129
Query: 873 KPRSKPHSTQAAKNPPENR-----PSQGKNVTCYNCGKPGHISRYCRLKRRISELHLEPE 927
K ++P+ + + P K C+ CG GH ++YC++ R++ EL L+ +
Sbjct: 2130 KKPTRPYKKSRFPRKKDFKATPKTPFNFKEAICHRCGIKGHTAKYCKMNRKLHELGLDDD 2189
Query: 928 IEDKINNLLIQTSDEEESASSDS------EVSEDLNQIQNDDDPQSSS---SINVLTNEQ 978
I KI L+I++S+ E S S DS E+ + + N D +S S INVLT +Q
Sbjct: 2190 ILSKIAPLMIESSNSESSMSGDSDSLQIDELIDSDTSVSNSSDSESESYLKKINVLTKDQ 2249
Query: 979 DLLFRAINSIPDPDEKKIYLERLKFTLE-DKPPKNPITTNKFNLRDTFRRLEKSTIKPVT 1037
+ + I DP+ +K YLE+L T++ +K + + K N D L+K K
Sbjct: 2250 ETFLELVKHISDPNLQKEYLEKLLKTMDFNKAETSKVPIVKKNSYDLTEILDKKKTKKSV 2309
Query: 1038 --IQDLQSEVHTLQAEVKSLKQIQISQ----QLILDKLTEENSEESSSSSSTPNSASNNN 1091
IQDLQ E+ +++E+K LK+ Q S QL+L K +++S+ S+ S + +N
Sbjct: 2310 PNIQDLQKEIKDIKSEIKDLKEKQKSDSETIQLLLQKHLQDDSDNESTHSENHIEQNVDN 2369
Query: 1092 VG----DFLEIINNVIIQKFYINIKIIIG-DFILETPALFDTGANSSCISEGLIPTRYFE 1146
+ DFL ++ V +K+ I +I DF ++ ALFDTGA+ +CI + ++P R+ E
Sbjct: 2370 IESVPHDFLFVLKQVTTRKYLIKATLIFSNDFAIDAIALFDTGADLNCIRQDIVPKRFHE 2429
Query: 1147 KTTEKLSAAEGSKLIIKYKIPSAIIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYN 1206
KT E+LSAA SKL + K+ A I N+ E +T F+L ++ H VI+GTPFI + PY
Sbjct: 2430 KTKERLSAANNSKLKVDSKV-EASIHNNGFEFKTSFILTNDIHHAVILGTPFINLITPYT 2488
Query: 1207 TDEKGITVQHLGKPILFKFSKPPFSKTLNI--------------ISYKEKQINFLKEEIS 1252
+ I+ + K I+F F + P ++ LNI I+ K+ + FL++++S
Sbjct: 2489 VNYDSISFKVKNKKIIFPFIEKPKTRNLNIVKACSIYQNRINNLINSKQNDLTFLQKDLS 2548
Query: 1253 HKSIEVQLQQPSVKTRIGNILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTK 1312
+ IE LQ+ +K +I + I+ IC+DLP+AFW RK HMV+LPYE F +KQIPTK
Sbjct: 2549 LQRIENDLQRDFIKRKIFDFKTLIEKEICADLPSAFWNRKQHMVDLPYENSFDEKQIPTK 2608
Query: 1313 ARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKP 1372
ARPIQMN +L + C++EINDL++K LI +S+SPWSCA FYVNK +EIERGTPRLVINYKP
Sbjct: 2609 ARPIQMNMDLERHCKEEINDLVKKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKP 2668
Query: 1373 LNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYE 1432
LN+AL WIRYPIPNKKDLL +LH A IFSKFDMKSGFWQIQ+ KDRYKTAFTVPFGQYE
Sbjct: 2669 LNKALKWIRYPIPNKKDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYE 2728
Query: 1433 WNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKK 1492
W VMPFGLKNAPSEFQRIMN+I+NPYS+F IVYIDDVLIFS SIDQHFKHL TF +K
Sbjct: 2729 WTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSNSIDQHFKHLKTFYFATRK 2788
Query: 1493 NGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLN 1552
GLA+S +KVSLFQTKIRFLGH+I +GTI PI R++ F DKFPD+I+DKTQLQRFLG LN
Sbjct: 2789 AGLAISNSKVSLFQTKIRFLGHHISKGTITPIERSLAFADKFPDKILDKTQLQRFLGSLN 2848
Query: 1553 YVADFCPQLS 1562
YV DFCP +S
Sbjct: 2849 YVLDFCPNIS 2858
Score = 454 bits (1167), Expect = e-125
Identities = 216/285 (75%), Positives = 245/285 (85%)
Query: 1292 KSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATF 1351
K HMV+LPYE F +KQIPTKARPIQMN +L + C++EINDL++K LI +S+SPWSCA F
Sbjct: 1123 KQHMVDLPYENSFDEKQIPTKARPIQMNMDLERHCKEEINDLVKKGLIVKSRSPWSCAAF 1182
Query: 1352 YVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQ 1411
YVNK +EIERGTPRLVINYKPLN+AL WIRYPIPNKKDLL +LH A IFSKFDMKS FWQ
Sbjct: 1183 YVNKNSEIERGTPRLVINYKPLNKALKWIRYPIPNKKDLLQKLHSAFIFSKFDMKSVFWQ 1242
Query: 1412 IQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLI 1471
IQ+ K+RYKTAFTVPFGQYEW VMPFGLKNAPSEFQRIMN+I+NPYS+F IVYIDDVLI
Sbjct: 1243 IQIHPKERYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLI 1302
Query: 1472 FSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFT 1531
FS SIDQHFKHL TF +K GLA+S +KVSLFQTKIRFLGH+I +GTI PI R++ F
Sbjct: 1303 FSNSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIERSLAFA 1362
Query: 1532 DKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDRLKKDP 1576
DKFPD+I+DKTQLQRFLG LNYV DFCP +S + K LHDRLKK P
Sbjct: 1363 DKFPDKILDKTQLQRFLGSLNYVLDFCPNISRLSKPLHDRLKKKP 1407
Score = 150 bits (379), Expect = 4e-34
Identities = 80/213 (37%), Positives = 116/213 (53%), Gaps = 52/213 (24%)
Query: 625 KILQNMTMVATAYETSNNCPEYLIVEILVADFCGQLKGWWDNYLTEDEKNQILTAVKTDE 684
++LQ MTM A AY+T + + I EIL+A F GQLK
Sbjct: 671 RVLQQMTMAANAYKTQSGTSDMAIAEILIAGFTGQLK----------------------- 707
Query: 685 EGNPIIEDGKLISDAVNSLIFTIAQHFVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTF 744
GDPS ++D++ +LL NL+C+ L DF+ YK TF
Sbjct: 708 ----------------------------GDPSHLRDKNAELLHNLRCRKLSDFQLYKTTF 739
Query: 745 LTRVYTREDSQQAFWKEKFLAGLPKSFGDKVREKLRSQNPGGEIPYQTLSYGQLIAIIQR 804
TR++ R+D+ WKEKFLAGLP G+KVR +++ IPY L+YGQL++ + +
Sbjct: 740 FTRLFLRDDANHTTWKEKFLAGLPTLLGEKVRNSIKALY-DNRIPYDELTYGQLVSFVNK 798
Query: 805 VALKICQDDKIQQQLTKEKSQNRRDLGTFCEQF 837
LKICQD K+Q++L +E Q++R+LG+FC+QF
Sbjct: 799 EGLKICQDLKLQKRLKQELRQSKRELGSFCKQF 831
Score = 149 bits (376), Expect = 8e-34
Identities = 96/278 (34%), Positives = 153/278 (54%), Gaps = 17/278 (6%)
Query: 942 EEESASSDSEVSEDLNQIQNDDDPQSSS---SINVLTNEQDLLFRAINSIPDPDEKKIYL 998
+ +S D + D + + N D +S S IN+LT +Q+ + I DP+ +K YL
Sbjct: 847 DSDSLQIDELIDSDTS-VSNSSDSESESYLKKINILTKDQETFLELVKHISDPNLQKEYL 905
Query: 999 ERLKFTLE-DKPPKNPITTNKFNLRDTFRRLEKSTIKPVT--IQDLQSEVHTLQAEVKSL 1055
E+L T++ +K + + K N D L+K K IQDLQ E+ +++E+K L
Sbjct: 906 EKLLKTMDFNKAETSKVPIVKKNSYDLTEILDKKKTKKSVPNIQDLQKEIKDIKSEIKDL 965
Query: 1056 KQIQISQ----QLILDKLTEENSEESSSSSSTPNSASNNNVG----DFLEIINNVIIQKF 1107
K+ Q S QL+L K +++S+ S+ S + +N+ DFL ++ V +K+
Sbjct: 966 KEKQKSDSETIQLLLQKHLQDDSDNESTHSENHIEQNVDNIESVPHDFLFVLKQVTTRKY 1025
Query: 1108 YINIKIIIG-DFILETPALFDTGANSSCISEGLIPTRYFEKTTEKLSAAEGSKLIIKYKI 1166
I +I DF ++ ALFDTGA+ +CI + ++P R+ EKT E+LSAA SKL + K+
Sbjct: 1026 LIKATLIFSNDFAIDAIALFDTGADLNCIRQDIVPKRFHEKTKERLSAANNSKLKVDSKV 1085
Query: 1167 PSAIIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFP 1204
A I N+ E +T F+L ++ H VI+GTPFI + P
Sbjct: 1086 -EASIHNNGFEFKTSFILTNDIHHAVILGTPFINLITP 1122
>gb|AAK68664.1| ORF I polyprotein [petunia vein clearing virus]
gi|14575753|ref|NP_127504.1| ORF I polyprotein [petunia
vein clearing virus]
Length = 2179
Score = 347 bits (890), Expect = 2e-93
Identities = 190/483 (39%), Positives = 287/483 (59%), Gaps = 12/483 (2%)
Query: 1259 QLQQPSVKTRIGNILENIQSSICSDLPNAFWERKSH--------MVELPYEKDFSDKQIP 1310
+L Q + + + + I++ +C+D F + SH ++LP++K+ + P
Sbjct: 1328 RLFQLTTSNELQQLEDVIKNQLCADSHVDFLSKCSHPLWLNQDFFIQLPFKKN--ENINP 1385
Query: 1311 TKARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINY 1370
TKA MN E LQ KE ++L Q LI S S W+C FYVNK++E RG RLVINY
Sbjct: 1386 TKASHSGMNPEHLQLAIKECDELQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINY 1445
Query: 1371 KPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQ 1430
+PLN L ++PIPNK L + L AK+FSKFD+KSGFWQ+ + +R KT F +P
Sbjct: 1446 QPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRH 1505
Query: 1431 YEWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVI 1490
++W VMPFGLK APS FQ+ M +IF P +VYIDD+L+FS++++ H K LN FIS++
Sbjct: 1506 FQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLV 1565
Query: 1491 KKNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGC 1550
KK G+ +S K+ L Q KI+FLG + GT P KFPD + Q+Q+FLG
Sbjct: 1566 KKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGI 1625
Query: 1551 LNYVADFCPQLSTIIKLLHDRLKKDPPPWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKI 1610
+NY+ DF P+++ I L D LKK PP W N VKQ+K + + L++P+ + KI
Sbjct: 1626 VNYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPS-EGKKI 1684
Query: 1611 VETDASDIGFGGILKQKIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDL 1670
++TDASD + +L ++ +I F S + ++Q+Y + KE+LA+ I KF + L
Sbjct: 1685 LQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFL 1744
Query: 1671 INQTFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLT 1730
I+ FLV +D ++ +++ + K + + + RW S + FE++++KG N L DFL+
Sbjct: 1745 IHTNFLVEMDMRAFPKMIRLNPKIVPNSQLL-RWAQWFSPYQFEVKHLKGKDNILADFLS 1803
Query: 1731 REY 1733
R +
Sbjct: 1804 RPH 1806
Score = 47.0 bits (110), Expect = 0.006
Identities = 70/322 (21%), Positives = 124/322 (37%), Gaps = 57/322 (17%)
Query: 646 YLIVEILVADFCGQLKGWWDNYLTEDEKNQILTAVKTDEEGNPIIEDGKLISDAVNSLIF 705
+LI+ A G L+ WW N + D+KN+ LT+ D N I
Sbjct: 887 FLILSEFTARLSGTLREWW-NSVGPDDKNRFLTS--QDFTWN----------------IR 927
Query: 706 TIAQHFVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTFLTRVYTR------EDSQQAFW 759
+ +F GD S K+ + +KC S Y + R + R
Sbjct: 928 ILYSYFCGDQSQNKEELRRQIFEMKCLS------YDRKKIDRHFQRMIKLFYHIGGDISL 981
Query: 760 KEKFLAGLPKSFGDKVREKLRSQNPGGEIPYQTLSYGQL-IAIIQRVALKICQDDKIQQQ 818
K+ F++ LP +++ ++ + S Q+ + I++ A + D +++
Sbjct: 982 KQAFISSLPPILSERISALIKERGT---------SVTQMHVGDIRQTAFYVLDDLCSKRK 1032
Query: 819 LTKEKSQNRRDLGTFCEQF-----GIQGCPKKPKPRKHDPPPKQQWRRNSSRNHDHRKPK 873
+ + RDL C + G +GC P + ++++ S + D R+ +
Sbjct: 1033 FFNQMKKMSRDLEKACTKSDLIIKGDKGCSGYCNPSRRRK--YKRFKLPSFKERDGRQYR 1090
Query: 874 PRSKPHSTQAAKNPPENRPSQGKNVTCYNCGKPGHISRYCRLKRRISELHLEPEIEDKIN 933
R + +P +C+ CGK GH SR C ++ + L EI+ K
Sbjct: 1091 KRRRFFRRSKTSKAMRQKPR-----SCFTCGKIGHFSRNCPQNKK--SIKLISEIQ-KYT 1142
Query: 934 NLLIQTSDEEESASSDSEVSED 955
+ I+ D E S + E SED
Sbjct: 1143 GIDIE-DDLESVFSIEDEPSED 1163
>ref|NP_917589.1| sumilar to Oryza sativa chromosome 10, OSJNBb0036B06.4 [Oryza sativa
(japonica cultivar-group)] gi|20804792|dbj|BAB92476.1|
hypothetical protein [Oryza sativa (japonica
cultivar-group)] gi|18677105|dbj|BAB84832.1| hypothetical
protein [Oryza sativa (japonica cultivar-group)]
Length = 1634
Score = 347 bits (889), Expect = 3e-93
Identities = 242/741 (32%), Positives = 379/741 (50%), Gaps = 69/741 (9%)
Query: 540 NTSASSLNNIEERESDDQ--SVRSIPVVNPVIHNSKNQWRKETKLYYPRATAPDLLLEEK 597
N A LNN++ ++ ++ +VN + S T+ YYPR T DL EE
Sbjct: 367 NELALKLNNLKVNKNINEISDNEKYDIVNKIFKPST--LTSTTRNYYPRPTYADLQFEEM 424
Query: 598 DS-SNFKSFSANNVYEWNIDGENEYGITKILQNMTMVATAYETSNNCPEYLIVEILVADF 656
N ++ + EWN+DG EY I + M M A A + N E ++V F
Sbjct: 425 PQIQNMTYYNGKEIVEWNLDGFTEYQIFTLCHQMIMYANACIANGN-KEREAANMIVIGF 483
Query: 657 CGQLKGWWDNYLTEDEKNQILTAVKTDEEGNPIIE-DGK-----LISDAVNSLIFTIAQH 710
GQLKGWW+NYL E ++ +IL AVK D++G P+ + DG ISDA+ +LI+ I H
Sbjct: 484 SGQLKGWWNNYLNETQRQEILCAVKRDDQGRPLPDRDGNGNPTGNISDALATLIYNIIYH 543
Query: 711 FVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTFLTRVYTREDSQQAFWKEKFLAGLPKS 770
F G+ I +++ + L NLKCK++ DFRWYKDTFL+++YT + Q FWKEK+++GLP
Sbjct: 544 FAGNYHDIYEKNREQLINLKCKTMSDFRWYKDTFLSKLYTLPEPNQDFWKEKYISGLPPL 603
Query: 771 FGDKVREKLRSQNPGGEIPYQTLSYGQLIAIIQRVALKICQDDKIQQQLTKEKSQNRRDL 830
F +KVR LR + GG I Y L G++ IQ V ++C D KI+ QL K++ +R++
Sbjct: 604 FAEKVRNSLRKEG-GGSINYHYLDIGKITQKIQLVGAELCNDLKIKDQLKKQRILGKREM 662
Query: 831 GTFCEQFGIQGCPKKPKPRKHDPPPKQQWRRNSSRNHDHRKPKPRSKPHSTQAAKNPPE- 889
G FC QFG Q DP +R+ + + KP +SK S QA K P+
Sbjct: 663 GDFCYQFGFQ-----------DP---YVYRKRKTHSKPMTKPNDKSK-MSFQATKRKPKR 707
Query: 890 -------NRPSQGKNVTCYNCGKPGHISRYC---RLKRRISELHLEPEIEDKINNLLIQT 939
+ ++ K CY CG GHI+ C ++K+ I L L+ E ED L
Sbjct: 708 IYNKNIRTQDTESKETICYKCGLKGHIANRCFKSKVKKEIQAL-LDSESEDVKEKLEAIL 766
Query: 940 SDEEESASSDSEVSEDLNQIQ---------NDDDPQSSSSINVLTNEQDLLFRAINSIPD 990
++ + SSD E + ++N Q ++ + +S +I VLT+ ++ + +I D
Sbjct: 767 NNIDNDLSSDEEKNAEINCCQDSGCSCCEPDNSEEESDENILVLTSLEEFVLDTFETIQD 826
Query: 991 PDEKKIYLER-LKFTLEDKPP-KNPITTNKF-NLRDTFRRLEKSTIKPVTIQDLQSEVHT 1047
P+EK+ LE+ L DK K I +KF ++ + F+RL++ K + Q ++ +
Sbjct: 827 PEEKRRVLEKFLSRVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKK-----NEQPDLIS 881
Query: 1048 LQAEVKSLKQ--IQISQQLILDKLTEENSEESSSSSSTPNSASNNNVGDFLEIINNVIIQ 1105
L + K +KQ +I ++L + E P ++ VG I + Q
Sbjct: 882 LFEDQKIMKQDLEEIRKRLY---MLESKEGFHMEEKDEPIQEDDHVVG----TIQKYMKQ 934
Query: 1106 KFYINI--KIIIGDFILETPALFDTGANSSCISEGLIPTRYFEKTTEKLSAAEGSKLIIK 1163
K+Y + + I G + + L D+GA+ SCI EG+IP +YF K ++ A+G L ++
Sbjct: 935 KWYTEVMYRFIDGSY-FQHITLIDSGADVSCIREGIIPHKYFYKAAHRIRGADGRLLTVE 993
Query: 1164 YKIPSAIIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITVQHLGKPILF 1223
Y+IP I + I+T FLLV+NL VI+GTPF+ + P+ + I + + K +
Sbjct: 994 YQIPEIYICISEVCIKTSFLLVKNLKQDVILGTPFLSLIRPFLVTNEDIQFKIMDKQVSL 1053
Query: 1224 KFSKPPFSKTLNIISYKEKQI 1244
+FS +I K +Q+
Sbjct: 1054 RFSSNTDEILDQLIQTKREQV 1074
>ref|XP_483246.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|42408922|dbj|BAD10179.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1275
Score = 345 bits (886), Expect = 6e-93
Identities = 233/699 (33%), Positives = 364/699 (51%), Gaps = 65/699 (9%)
Query: 580 TKLYYPRATAPDLLLEEKDS-SNFKSFSANNVYEWNIDGENEYGITKILQNMTMVATAYE 638
T+ YYPR T DL EE N ++ + EWN+DG EY I + M M A A
Sbjct: 487 TRNYYPRPTYADLQFEEMPQIQNMIYYNGKEIVEWNLDGFTEYQIFTLCHQMIMYANACI 546
Query: 639 TSNNCPEYLIVEILVADFCGQLKGWWDNYLTEDEKNQILTAVKTDEEGNPIIE-DGK--- 694
+ N E ++V F GQLKGWW+NYL E ++ +IL AVK D++G P+ + DG
Sbjct: 547 ANGN-KEREAANMIVIGFSGQLKGWWNNYLNETQRQEILCAVKRDDQGRPLPDRDGNGNP 605
Query: 695 --LISDAVNSLIFTIAQHFVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTFLTRVYTRE 752
ISDA+ +LI+ I HF G+ I +++ + L NLKCK++ DFRWYKDTFL+++YT
Sbjct: 606 TGNISDALATLIYNIIYHFAGNYHDIYEKNREQLINLKCKTMSDFRWYKDTFLSKLYTLP 665
Query: 753 DSQQAFWKEKFLAGLPKSFGDKVREKLRSQNPGGEIPYQTLSYGQLIAIIQRVALKICQD 812
+ Q FWKEK+++GLP F +KVR LR + GG I Y L G++ IQ V ++C D
Sbjct: 666 EPNQDFWKEKYISGLPPLFAEKVRNSLRKEG-GGSINYHYLDIGKITQKIQLVGAELCND 724
Query: 813 DKIQQQLTKEKSQNRRDLGTFCEQFGIQGCPKKPKPRKHDPPPKQQWRRNSSRNHDHRKP 872
KI+ QL K++ +R++G FC QFG Q P H R+ + + KP
Sbjct: 725 LKIKDQLKKQRILGKREMGDFCYQFGFQ------DPYVH--------RKRKTHSKPMTKP 770
Query: 873 KPRSKPHSTQAAKNPPE--------NRPSQGKNVTCYNCGKPGHISRYC---RLKRRISE 921
+SK S QA K P+ + ++ K CY CG GHI+ C ++K+ I
Sbjct: 771 NDKSK-MSFQATKRKPKRIYNKNIRTQDTESKETICYKCGLKGHIANRCFKSKVKKEIQA 829
Query: 922 LHLEPEIEDKINNLLIQTSDEEESASSDSEVSEDLNQIQ---------NDDDPQSSSSIN 972
L L+ E ED L ++ + +SSD E + ++N Q ++ + +S +I
Sbjct: 830 L-LDSESEDVKEKLEAILNNIDNDSSSDEEKNAEINCCQDSGCSCCEPDNSEEESDENIL 888
Query: 973 VLTNEQDLLFRAINSIPDPDEKKIYLER-LKFTLEDKPP-KNPITTNKF-NLRDTFRRLE 1029
VLT+ ++ + +I DP+EK+ LE+ L DK K I +KF ++ + F+RL+
Sbjct: 889 VLTSLEEFVLDTFETIQDPEEKRRVLEKFLSRVKTDKDKLKKDIQKSKFLSIDEVFKRLD 948
Query: 1030 KSTIKPVTIQDLQSEVHTLQAEVKSLKQ--IQISQQLILDKLTEENSEESSSSSSTPNSA 1087
+ K + Q ++ +L + K +KQ +I ++L + E P
Sbjct: 949 EQKKK-----NEQPDLISLFEDQKIMKQDLEEIRKRLY---MLESKEGFHMEEKDEPIQE 1000
Query: 1088 SNNNVGDFLEIINNVIIQKFYINI--KIIIGDFILETPALFDTGANSSCISEGLIPTRYF 1145
++ VG I + QK+Y + + I G + + L D+GA+ +CI EG+IP +YF
Sbjct: 1001 DDHVVG----TIQKYMKQKWYTEVMYRFIDGSY-FQHITLIDSGADVNCIREGIIPHKYF 1055
Query: 1146 EKTTEKLSAAEGSKLIIKYKIPSAIIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPY 1205
K ++ A+G L ++Y+IP I + I+T FLLV+NL VI+GTPF+ + P+
Sbjct: 1056 YKAAHRIRGADGGLLTVEYQIPEIYICITEVCIKTSFLLVKNLKQDVILGTPFLSLIRPF 1115
Query: 1206 NTDEKGITVQHLGKPILFKFSKPPFSKTLNIISYKEKQI 1244
+ I + +GK + +FS ++ K +Q+
Sbjct: 1116 LVTNEDIQFKIMGKQVSLRFSSNTDEILDQLVQTKREQV 1154
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 345 bits (884), Expect = 1e-92
Identities = 188/483 (38%), Positives = 287/483 (58%), Gaps = 12/483 (2%)
Query: 1259 QLQQPSVKTRIGNILENIQSSICSDLPNAFWERKSH--------MVELPYEKDFSDKQIP 1310
+L Q + + + + I++ +C++ F + SH ++LP++++ + P
Sbjct: 1329 RLFQLTTSNELQQLEDVIKNQLCAESHVDFLSKCSHPLWLNQDFFIQLPFKRN--ENINP 1386
Query: 1311 TKARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINY 1370
TKA MN E LQ KE ++L Q LI S S W+C FYVNK++E RG RLVINY
Sbjct: 1387 TKASHSGMNPEHLQLALKECDELQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINY 1446
Query: 1371 KPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQ 1430
+PLN L ++PIPNK L + L AK+FSKFD+KSGFWQ+ + +R KT F +P
Sbjct: 1447 QPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRH 1506
Query: 1431 YEWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVI 1490
++W VMPFGLK APS FQ+ M +IF P +VYIDD+L+FS++++ H K LN FIS++
Sbjct: 1507 FQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLV 1566
Query: 1491 KKNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGC 1550
KK G+ +S K+ L Q KI+FLG + GT P KFPD + Q+Q+FLG
Sbjct: 1567 KKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGI 1626
Query: 1551 LNYVADFCPQLSTIIKLLHDRLKKDPPPWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKI 1610
+NY+ DF P+++ I L D LKK PP W N VKQ+K + + L++P+ + KI
Sbjct: 1627 VNYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPS-EGKKI 1685
Query: 1611 VETDASDIGFGGILKQKIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDL 1670
++TDASD + +L ++ +I F S + ++Q+Y + KE+LA+ I KF + L
Sbjct: 1686 LQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFL 1745
Query: 1671 INQTFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLT 1730
I+ FLV +D ++ +++ + K + + + RW S + FE++++KG N L DFL+
Sbjct: 1746 IHTNFLVEMDMRAFPKMIRLNPKIVPNSQLL-RWAQWFSPYQFEVKHLKGKDNILADFLS 1804
Query: 1731 REY 1733
R +
Sbjct: 1805 RPH 1807
Score = 47.0 bits (110), Expect = 0.006
Identities = 70/322 (21%), Positives = 124/322 (37%), Gaps = 57/322 (17%)
Query: 646 YLIVEILVADFCGQLKGWWDNYLTEDEKNQILTAVKTDEEGNPIIEDGKLISDAVNSLIF 705
+LI+ A G L+ WW N + D+KN+ LT+ D N I
Sbjct: 888 FLILSEFTARLSGTLREWW-NSVGPDDKNRFLTS--QDFTWN----------------IR 928
Query: 706 TIAQHFVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTFLTRVYTR------EDSQQAFW 759
+ +F GD S K+ + +KC S Y + R + R
Sbjct: 929 ILYSYFCGDQSQNKEELRRQIFEMKCLS------YDRKKIDRHFQRMIKLFYHIGGDISL 982
Query: 760 KEKFLAGLPKSFGDKVREKLRSQNPGGEIPYQTLSYGQL-IAIIQRVALKICQDDKIQQQ 818
K+ F++ LP +++ ++ + S Q+ + I++ A + D +++
Sbjct: 983 KQAFISSLPPILSERISALIKERGT---------SVTQMHVGDIRQTAFYVLDDLCSKRK 1033
Query: 819 LTKEKSQNRRDLGTFCEQF-----GIQGCPKKPKPRKHDPPPKQQWRRNSSRNHDHRKPK 873
+ + RDL C + G +GC P + ++++ S + D R+ +
Sbjct: 1034 FFNQMKKMSRDLEKACTKSDLIIKGDKGCSGYCNPSRRRK--YKRFKLPSFKERDGRQYR 1091
Query: 874 PRSKPHSTQAAKNPPENRPSQGKNVTCYNCGKPGHISRYCRLKRRISELHLEPEIEDKIN 933
R + +P +C+ CGK GH SR C ++ + L EI+ K
Sbjct: 1092 KRRRFFRKSKTSKAMRQKPR-----SCFTCGKIGHFSRNCPQNKK--SIKLISEIQ-KYT 1143
Query: 934 NLLIQTSDEEESASSDSEVSED 955
+ I+ D E S + E SED
Sbjct: 1144 GIDIE-DDLESVFSIEDEPSED 1164
>gb|AAO67368.1| polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 345 bits (884), Expect = 1e-92
Identities = 188/483 (38%), Positives = 287/483 (58%), Gaps = 12/483 (2%)
Query: 1259 QLQQPSVKTRIGNILENIQSSICSDLPNAFWERKSH--------MVELPYEKDFSDKQIP 1310
+L Q + + + + I++ +C++ F + SH ++LP++++ + P
Sbjct: 1329 RLFQLTTSNELQQLEDVIKNQLCAESHVDFLSKCSHPLWLNQDFFIQLPFKRN--ENINP 1386
Query: 1311 TKARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINY 1370
TKA MN E LQ KE ++L Q LI S S W+C FYVNK++E RG RLVINY
Sbjct: 1387 TKASHSGMNPEHLQLALKECDELQQFDLIEPSDSQWACEAFYVNKRSEQVRGKLRLVINY 1446
Query: 1371 KPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQ 1430
+PLN L ++PIPNK L + L AK+FSKFD+KSGFWQ+ + +R KT F +P
Sbjct: 1447 QPLNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRH 1506
Query: 1431 YEWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVI 1490
++W VMPFGLK APS FQ+ M +IF P +VYIDD+L+FS++++ H K LN FIS++
Sbjct: 1507 FQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLV 1566
Query: 1491 KKNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGC 1550
KK G+ +S K+ L Q KI+FLG + GT P KFPD + Q+Q+FLG
Sbjct: 1567 KKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGI 1626
Query: 1551 LNYVADFCPQLSTIIKLLHDRLKKDPPPWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKI 1610
+NY+ DF P+++ I L D LKK PP W N VKQ+K + + L++P+ + KI
Sbjct: 1627 VNYIRDFIPEVTEHISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQQVKSLHIPS-EGKKI 1685
Query: 1611 VETDASDIGFGGILKQKIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDL 1670
++TDASD + +L ++ +I F S + ++Q+Y + KE+LA+ I KF + L
Sbjct: 1686 LQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFL 1745
Query: 1671 INQTFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLT 1730
I+ FLV +D ++ +++ + K + + + RW S + FE++++KG N L DFL+
Sbjct: 1746 IHTNFLVEMDMRAFPKMIRLNPKIVPNSQLL-RWAQWFSPYQFEVKHLKGKDNILADFLS 1804
Query: 1731 REY 1733
R +
Sbjct: 1805 RPH 1807
Score = 48.1 bits (113), Expect = 0.003
Identities = 68/321 (21%), Positives = 122/321 (37%), Gaps = 55/321 (17%)
Query: 646 YLIVEILVADFCGQLKGWWDNYLTEDEKNQILTAVKTDEEGNPIIEDGKLISDAVNSLIF 705
+LI+ A G L+ WW N + D+KN+ LT+ D N I
Sbjct: 888 FLILSEFTARLSGTLREWW-NSVGPDDKNRFLTS--QDFTWN----------------IR 928
Query: 706 TIAQHFVGDPSLIKDRSGDLLSNLKCKSLGDFRWYKDTFLTRVYTR------EDSQQAFW 759
+ +F GD S K+ + +KC S Y + R + R
Sbjct: 929 ILYSYFCGDQSQNKEELRRQIFEMKCLS------YDRKKIDRHFQRMIKLFYHIGGDISL 982
Query: 760 KEKFLAGLPKSFGDKVREKLRSQNPGGEIPYQTLSYGQLIAIIQRVALKICQDDKIQQQL 819
K+ F++ LP +++ ++ + G + + I++ + D +++
Sbjct: 983 KQAFISSLPPILSERISALIKERGTSGTQMH--------VGDIRQTGFYVLDDLCSKRKF 1034
Query: 820 TKEKSQNRRDLGTFCEQF-----GIQGCPKKPKPRKHDPPPKQQWRRNSSRNHDHRKPKP 874
+ + RDL C + G +GC P + ++++ S + D R+ +
Sbjct: 1035 FNQMKKMSRDLEKACTKSDLIIKGDKGCSGYCNPSRRRK--YKRFKLPSFKERDGRQYRK 1092
Query: 875 RSKPHSTQAAKNPPENRPSQGKNVTCYNCGKPGHISRYCRLKRRISELHLEPEIEDKINN 934
R + +P +C+ CGK GH SR C ++ + L EI+ K
Sbjct: 1093 RRRFFRKSKTSKAMRQKPR-----SCFTCGKIGHFSRNCPQNKK--SIKLISEIQ-KYTG 1144
Query: 935 LLIQTSDEEESASSDSEVSED 955
+ I+ D E S + E SED
Sbjct: 1145 IDIE-DDLESVFSIEDEPSED 1164
>sp|Q02964|POL_CAMVE Enzymatic polyprotein [Contains: Aspartic protease ; Endonuclease;
Reverse transcriptase ] gi|293185|gb|AAA62375.1| reverse
transcriptase
Length = 679
Score = 332 bits (852), Expect = 5e-89
Identities = 223/653 (34%), Positives = 337/653 (51%), Gaps = 55/653 (8%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 38 IELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAREI 97
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITV 1214
+KIP+ II N+ ++ PF+ T +VI K +P + + V
Sbjct: 98 FKIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVIFTK---NKSYPVHIAKLTRAV 151
Query: 1215 QHLGKPILFKFSK-------PPFSKTLNIISYKEKQINFLKE--EISHKSIEVQLQQPSV 1265
+ + L K P + + N I K+I L E +S + + + Q+
Sbjct: 152 RVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLKEIAILSEGRRLSEEKLFITQQRMQ- 210
Query: 1266 KTRIGNILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQF 1325
+I +LE + S D PN + ++L SD K +P++ + +
Sbjct: 211 --KIEELLEKVCSENPLD-PNKTKQWMKASIKL------SDPSKAIKVKPMKYSPMDREE 261
Query: 1326 CQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIP 1385
K+I +LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +P
Sbjct: 262 FDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLP 321
Query: 1386 NKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPS 1445
NK +LL + KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS
Sbjct: 322 NKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPS 381
Query: 1446 EFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLF 1505
FQR M+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF
Sbjct: 382 IFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 1506 QTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTII 1565
+ KI FLG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I
Sbjct: 442 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIR 501
Query: 1566 KLLHDRLKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGIL 1624
K L +LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+L
Sbjct: 502 KPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 561
Query: 1625 K----QKIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVD 1680
K + + E I + S + A++NY + KE LA++ +I KF L FL+R D
Sbjct: 562 KAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTD 621
Query: 1681 CKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
K + + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 622 NTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 674
>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
Length = 680
Score = 332 bits (850), Expect = 9e-89
Identities = 220/647 (34%), Positives = 335/647 (51%), Gaps = 43/647 (6%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKL--SAAEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 39 IELHCFVDTGASLCIASKFVIPEEHWVNAERPILVKIADGSSITISKVCKDIDLIIAGEI 98
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITV 1214
+KIP+ II N+ ++ PF+ T +VI K +P + + V
Sbjct: 99 FKIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVIFTK---NKSYPVHIAKLTRAV 152
Query: 1215 QHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSV---KTRIGN 1271
+ + L K ++ ++ +I EEI+ S +L + + + R+
Sbjct: 153 RVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQK 212
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
I E + +CS+ P + K M SD K +P++ + + K+I
Sbjct: 213 I-EELLEKVCSENPLDPNKTKQWMKA---SIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 268
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +PNK +LL
Sbjct: 269 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELL 328
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 329 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 388
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 389 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 448
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 449 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 508
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 509 LKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 568
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL+R D K
Sbjct: 569 EGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKS 628
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 629 FVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 675
>sp|P03555|POL_CAMVC Enzymatic polyprotein [Contains: Aspartic protease ; Endonuclease;
Reverse transcriptase ]
Length = 679
Score = 332 bits (850), Expect = 9e-89
Identities = 220/647 (34%), Positives = 335/647 (51%), Gaps = 43/647 (6%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 38 IELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEI 97
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITV 1214
+KIP+ II N+ ++ PF+ T +VI K +P + + V
Sbjct: 98 FKIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVIFTK---NKSYPVHITKLTRAV 151
Query: 1215 QHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSV---KTRIGN 1271
+ + L K ++ ++ +I EEI+ S +L + + + R+
Sbjct: 152 RVGIEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQK 211
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
I E + +CS+ P + K M SD K +P++ + + K+I
Sbjct: 212 I-EELLEKVCSENPLDPNKTKQWMKA---SIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 267
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +PNK +LL
Sbjct: 268 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELL 327
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 328 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 387
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 388 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 447
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 448 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 507
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 508 LKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 567
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL+R D K
Sbjct: 568 EGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKS 627
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 628 FVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 674
>gb|AAA21736.1| reverse transcriptase
Length = 680
Score = 331 bits (848), Expect = 2e-88
Identities = 219/647 (33%), Positives = 333/647 (50%), Gaps = 43/647 (6%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 39 IELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEI 98
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITV 1214
+KIP+ II N+ ++ PF+ T +VI K +P + V
Sbjct: 99 FKIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVIFAK---NKSYPVHIANVTRAV 152
Query: 1215 QHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSV---KTRIGN 1271
+ + L K ++ ++ +I EEI+ S +L + + + R+
Sbjct: 153 RVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQK 212
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
I E + +CS+ P + K M SD K +P++ + + K+I
Sbjct: 213 I-EELLEKVCSENPLDPNKTKQWMKA---SIKLSDPNKAIKVKPMKYSPMDREEFDKQIK 268
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +PNK +LL
Sbjct: 269 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELL 328
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 329 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 388
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 389 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 448
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 449 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 508
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 509 LKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 568
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL R D K
Sbjct: 569 EGINTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPAHFLTRTDNTHFKS 628
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA L+ + F++E+IKG+ N DFL+RE+
Sbjct: 629 FVNLNYKGDSKLGRNIRWQAWLNHYSFDVEHIKGTDNHFVDFLSREF 675
>emb|CAA23460.1| unnamed protein product [Cauliflower mosaic virus]
gi|130592|sp|P03554|POL_CAMVS Enzymatic polyprotein
[Contains: Aspartic protease ; Endonuclease; Reverse
transcriptase ] gi|9626943|ref|NP_056728.1| reverse
transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 330 bits (847), Expect = 2e-88
Identities = 219/647 (33%), Positives = 335/647 (50%), Gaps = 43/647 (6%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 38 IELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIAGEI 97
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITV 1214
++IP+ II N+ ++ PF+ T +VI K +P + + V
Sbjct: 98 FRIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVIFTK---NKSYPVHIAKLTRAV 151
Query: 1215 QHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSV---KTRIGN 1271
+ + L K ++ ++ +I EEI+ S +L + + + R+
Sbjct: 152 RVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFITQQRMQK 211
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
I E + +CS+ P + K M SD K +P++ + + K+I
Sbjct: 212 I-EELLEKVCSENPLDPNKTKQWMKA---SIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 267
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +PNK +LL
Sbjct: 268 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELL 327
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 328 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 387
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 388 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 447
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 448 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 507
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 508 LKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 567
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL+R D K
Sbjct: 568 EGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKS 627
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 628 FVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 674
>emb|CAH68829.1| polyprotein [Carnation etched ring virus]
Length = 656
Score = 328 bits (841), Expect = 1e-87
Identities = 223/643 (34%), Positives = 338/643 (51%), Gaps = 54/643 (8%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEK---LSAAEG---------SKLIIK---- 1163
LE DTG++ S+ +IP Y++ T EK + A G SKL I+
Sbjct: 26 LELHCYVDTGSSLCMASKYVIPEEYWQ-TAEKPLNIKIANGKIIQLTKVCSKLPIRLGGE 84
Query: 1164 -YKIPSA---------IIKNDSLEIETPFLLVRNLTH------KVIIGTPFIKKLFPYNT 1207
+ IP+ ++ N+ ++ +PF+ + + VIIG I K + Y
Sbjct: 85 RFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIGK--ITKAYQYGV 142
Query: 1208 DEKGITVQHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSVKT 1267
KG K +K ++P + +NI S + + I E+Q+ + S
Sbjct: 143 --KGFLESMKKK---YKVNRP---EPINITSNQHLFLEEGGSNIEELCYEIQISKFSA-- 192
Query: 1268 RIGNILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQ 1327
I +LE + S D P + + +EL D + + +P+ + +
Sbjct: 193 -IEEMLERVSSENPID-PEKSKQWMTATIEL------IDPKTIVEVKPMSYSPSDREEFD 244
Query: 1328 KEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 1387
K+I + L K+I+ SKSP F V +AE RG R+V+NYK +N+A + +PNK
Sbjct: 245 KQIKEPLDLKVIKPSKSPHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNK 304
Query: 1388 KDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEF 1447
+LLA + KI+S FD KSGFWQ+ L ++ + TAFT P G Y+WNV+PFGLK APS F
Sbjct: 305 DELLALVRGKKIYSSFDCKSGFWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIF 364
Query: 1448 QRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQT 1507
QR M FN +S + VY+DD+L+FS + ++H+ H+ + +K G+ +SK K LF+
Sbjct: 365 QRHMQTAFNQHSKYCCVYVDDILVFSNTEEEHYIHVLNILRRCEKLGIILSKKKAQLFKE 424
Query: 1508 KIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKL 1567
KI FLG I QGT P N +E KFPD+I DK QLQR LG L Y +D+ P+L++I K
Sbjct: 425 KINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRSLGILTYASDYIPKLASIRKP 484
Query: 1568 LHDRLKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILKQ 1626
L +LK+D W+D + + +IK +K+ P LY P P ++ETDAS+ +GGILK
Sbjct: 485 LQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKA 544
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+E I + S + A++NY + +KE+LA+ I KF L FL+R D K+
Sbjct: 545 IHNSHEYICRYASGSFKAAERNYHSNEKELLAVFRVIYKFSIYLTPCRFLIRSDNKNFTH 604
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFL 1729
+ ++K + RWQ LS +DF++E+I G+ N DFL
Sbjct: 605 FVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 647
>gb|AAW56089.1| polyprotein [Horseradish latent virus]
Length = 679
Score = 327 bits (839), Expect = 2e-87
Identities = 225/669 (33%), Positives = 333/669 (49%), Gaps = 46/669 (6%)
Query: 1097 EIINNVIIQKFYINIKIIIGDF-ILETPALFDTGANSSCISEGLIPTRYFEKTTEKLSAA 1155
+++N YI ++ + I+E DTGA+ S+ +IP +E K++
Sbjct: 22 QVMNITNPNSIYIRGRLYFSGYKIVELDCFVDTGASLCIASKHVIPEERWEAAPRKINVK 81
Query: 1156 EGSKLIIKY----KIPSAIIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKG 1211
++ I + II + I+ F + IIG F ++ P+
Sbjct: 82 IANESTITLDKICRNLDIIIAGERFHIDVVFQQESGIDF--IIGNNFCQEYSPF------ 133
Query: 1212 ITVQHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSVKT---- 1267
+Q G + + T ++K FL E + +S Q + ++ T
Sbjct: 134 --IQFTGHIVFTMKDQYQVPITKLRRAFKRGIPGFL-ESMKKRSTAQQPEPLNISTNKTV 190
Query: 1268 ------RIGNIL----------ENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPT 1311
R G L E + +CS+ P + K M SD
Sbjct: 191 SLSRGRRFGEKLRITQERMVKIEELLEKVCSENPLDPEKSKGWMQA---SIKLSDPTKVI 247
Query: 1312 KARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYK 1371
K +P++ + + +K+I +LL K+IR SKSP F VN +AE RG R+V+NYK
Sbjct: 248 KVKPMKYSPMDREEFEKQIQELLDLKVIRPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYK 307
Query: 1372 PLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQY 1431
+N A Y +PNK +LL + KIFS FD KSGFWQ++L E+ + TAFT P G Y
Sbjct: 308 AMNDATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVRLDEESKSLTAFTCPQGHY 367
Query: 1432 EWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIK 1491
EWNV+PFG+K APS FQR M+E F + F +Y+DD+L+FS + H H+ +
Sbjct: 368 EWNVVPFGMKQAPSIFQRHMDEAFKVFRKFCCIYVDDILVFSDNEQNHQLHVAMILQKCY 427
Query: 1492 KNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCL 1551
++G+ +SK K LF+ +I FLG I QGT P + +E KFPD I K QLQRFLG L
Sbjct: 428 QHGIILSKKKAQLFKERINFLGLEIDQGTHRPQSHILEHIQKFPDIIESKLQLQRFLGVL 487
Query: 1552 NYVADFCPQLSTIIKLLHDRLKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKI 1610
Y +D+ P+L+ I K L +LK++ W+ T +K++K + P L+ P P+ I
Sbjct: 488 TYASDYIPKLAQIRKPLQAKLKENVQWRWTPEDTLYMKKVKKNLNGFPPLHHPLPEEKLI 547
Query: 1611 VETDASDIGFGGILKQKIFD---NEQI---IAFTSKHWNPAQQNYSTVKKEVLAIVLSIS 1664
+ETDASD +GGILK D NE I + S + PA+QNY + KE LA++ +I
Sbjct: 548 IETDASDNYWGGILKAIHIDLSTNESIELVCRYASGSFKPAEQNYHSNDKETLAVIRTIQ 607
Query: 1665 KFQYDLINQTFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNS 1724
KF L FLVR D K L + K + RWQ L + F++++IKG+ N
Sbjct: 608 KFSIYLTPVRFLVRTDNTHFKYFLNINYKGDSKMGRNIRWQGWLQNYVFDVDHIKGTNNC 667
Query: 1725 LPDFLTREY 1733
L DFL+RE+
Sbjct: 668 LADFLSREF 676
>sp|P03556|POL_CAMVD Enzymatic polyprotein [Contains: Aspartic protease ; Endonuclease;
Reverse transcriptase ]
Length = 674
Score = 327 bits (837), Expect = 3e-87
Identities = 219/647 (33%), Positives = 335/647 (50%), Gaps = 50/647 (7%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 40 IELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIADGSSITINKVCRDIDLIIAGEI 99
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIK-KLFPYNTDEKGIT 1213
+ IP+ II N+ ++ PF+ T +VI F K + +P + +
Sbjct: 100 FHIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVI----FTKDRTYPVHIAKLTRA 152
Query: 1214 VQHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKE--EISHKSIEVQLQQPSVKTRIGN 1271
V+ + L K ++ ++ +I L E +S + + + Q+ +I
Sbjct: 153 VRVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQ---KIEE 209
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
+LE + S D PN + ++L SD K +P++ + + K+I
Sbjct: 210 LLEKVCSENPLD-PNKTKQWMKASIKL------SDPSKAIKVKPMKYSPMDREEFDKQIK 262
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y PNK +LL
Sbjct: 263 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELL 322
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 323 TLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 382
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 383 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 442
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 443 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 502
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 503 LKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 562
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL+R D K
Sbjct: 563 EGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKS 622
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 623 FVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 669
>sp|Q00962|POL_CAMVN Enzymatic polyprotein [Contains: Aspartic protease ; Endonuclease;
Reverse transcriptase ] gi|331571|gb|AAA46358.1| reverse
transcriptase gi|445598|prf||1909346E reverse
transcriptase
Length = 680
Score = 326 bits (836), Expect = 4e-87
Identities = 220/653 (33%), Positives = 334/653 (50%), Gaps = 55/653 (8%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 39 IELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIADGSSITISKVCKDIDLIIVGVI 98
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIKKLFPYNTDEKGITV 1214
+KIP+ II N+ ++ PF+ T +VI K +P + + V
Sbjct: 99 FKIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVIFTK---NKSYPVHIAKLTRAV 152
Query: 1215 QHLGKPILFKFSK-------PPFSKTLNIISYKEKQINFLKE--EISHKSIEVQLQQPSV 1265
+ + L K P + + N I ++I L E +S + + + QQ
Sbjct: 153 RVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEKLFIT-QQRMQ 211
Query: 1266 KTRIGNILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQF 1325
KT E + +CS+ P + K M SD K +P++ + +
Sbjct: 212 KT------EELLEKVCSENPLDPNKTKQWMKA---SIKLSDPSKAIKVKPMKYSPMDREE 262
Query: 1326 CQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIP 1385
K+I +LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +P
Sbjct: 263 FDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLP 322
Query: 1386 NKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPS 1445
NK +LL + KIFS FD KSGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS
Sbjct: 323 NKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPS 382
Query: 1446 EFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLF 1505
FQR M+E F + F VY+DD+++FS + + H H+ + ++G+ +SK K LF
Sbjct: 383 IFQRHMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 442
Query: 1506 QTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTII 1565
+ KI FLG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P L+ +
Sbjct: 443 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMR 502
Query: 1566 KLLHDRLKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGIL 1624
+ L +LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+L
Sbjct: 503 QPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGML 562
Query: 1625 K----QKIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVD 1680
K + + E I + S + A++NY + KE LA++ +I KF L FL+R D
Sbjct: 563 KAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTD 622
Query: 1681 CKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
K + + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 623 NTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 675
>gb|AAD37341.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 326 bits (836), Expect = 4e-87
Identities = 218/647 (33%), Positives = 335/647 (51%), Gaps = 50/647 (7%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 40 IELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIADGSSITINKVCRDIDLIIAGEI 99
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIK-KLFPYNTDEKGIT 1213
+ IP+ II N+ ++ PF+ T +VI F K + +P + +
Sbjct: 100 FHIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVI----FTKDRTYPVHIAKLTRA 152
Query: 1214 VQHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKE--EISHKSIEVQLQQPSVKTRIGN 1271
V+ + L K ++ ++ +I L E +S + + + Q+ +I
Sbjct: 153 VRVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQ---KIEE 209
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
+LE + S D PN + ++L SD K +P++ + + K+I
Sbjct: 210 LLEKVCSENPLD-PNKTKQWMKASIKL------SDPSKAIKVKPMKYSPMDREEFDKQIK 262
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y +PNK +LL
Sbjct: 263 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELL 322
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS FD KSGFWQ+ ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 323 TLIRGKKIFSSFDCKSGFWQVLPDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 382
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 383 DEAFRVFRKFCCVYVDDILVFSNTEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 442
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 443 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 502
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 503 LKENVPWKWTKEDTLYMQKVKKNLQGFPPLHRPLPEEKLIIETDASDDYWGGMLKAIQIN 562
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL+R D K
Sbjct: 563 EGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKS 622
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 623 FVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNRFADFLSREF 669
>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
Reverse transcriptase] [Figwort mosaic virus]
gi|58813|emb|CAA29527.1| unnamed protein product [Figwort
mosaic virus] gi|130600|sp|P09523|POL_FMVD Enzymatic
polyprotein [Contains: Aspartic protease ; Endonuclease;
Reverse transcriptase ]
Length = 666
Score = 322 bits (826), Expect = 5e-86
Identities = 206/615 (33%), Positives = 318/615 (51%), Gaps = 12/615 (1%)
Query: 1127 DTGANSSCISEGLIPTRYFEKTTEKLSAAEGSKLIIKYK--IPSAIIKNDSLEIETPFLL 1184
DTGA+ S +IP +E + + + ++ +IK + +K E P +
Sbjct: 54 DTGASLCIASRYIIPEELWENSPKDIQVKIANQELIKITKVCKNLKVKFAGKSFEIPTVY 113
Query: 1185 VRNLTHKVIIGTPFIKKLFPYNTDEKGITVQHLGKPILFKFSKPPFSKTLNIISYKEKQI 1244
+ +IG F + P+ E I + +L K FS + N + +
Sbjct: 114 QQETGIDFLIGNNFCRLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVS-NPSFLENMKK 172
Query: 1245 NFLKEEISHKSIEVQLQQPSVK----TRIGNILENIQSSICSDLPNAFWERKSHMVELPY 1300
+ E+I +I + P + T +E + +CS+ P + K M
Sbjct: 173 DSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSENPIDPIKSKQWMKA--- 229
Query: 1301 EKDFSDKQIPTKARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAEIE 1360
D + +P+ + + + K+I +LL LI SKS F V +AE
Sbjct: 230 SIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERR 289
Query: 1361 RGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRY 1420
RG R+V+NYK +NQA + +PN ++LL L IFS FD KSGFWQ+ L E+ +
Sbjct: 290 RGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQK 349
Query: 1421 KTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQHF 1480
TAFT P G ++W V+PFGLK APS FQR M N F +VY+DD+++FS S H+
Sbjct: 350 LTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHY 409
Query: 1481 KHLNTFISVIKKNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIID 1540
H+ + +++K G+ +SK K +LF+ KI FLG I +GT P N +E KFPD++ D
Sbjct: 410 NHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLED 469
Query: 1541 KTQLQRFLGCLNYVADFCPQLSTIIKLLHDRLKKDPP-PWSDVHTNVVKQIKLRIKNLPC 1599
K LQRFLG L Y + P+L+ I K L +LKKD W+ ++ VK+IK + + P
Sbjct: 470 KKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPK 529
Query: 1600 LYLPNPQAFKIVETDASDIGFGGILKQKIFDNEQIIA-FTSKHWNPAQQNYSTVKKEVLA 1658
LYLP P+ I+ETDASD +GG+LK + D ++I ++S + A++NY + KE+LA
Sbjct: 530 LYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLA 589
Query: 1659 IVLSISKFQYDLINQTFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYI 1718
+ I+KF L F VR D K+ L+ ++K + + RWQ S + F++E++
Sbjct: 590 VKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQFDVEHL 649
Query: 1719 KGSTNSLPDFLTREY 1733
+G N L D LTR++
Sbjct: 650 EGVKNVLADCLTRDF 664
>gb|AAA46350.1| ORF5; putative
Length = 675
Score = 321 bits (823), Expect = 1e-85
Identities = 217/647 (33%), Positives = 333/647 (50%), Gaps = 50/647 (7%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSA--AEGSKLIIK-------------- 1163
+E DTGA+ S+ +IP ++ + A+GS + I
Sbjct: 41 IELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIADGSSITINKVCRDIDLIIAGEI 100
Query: 1164 YKIPSA---------IIKNDSLEIETPFLLVRNLTHKVIIGTPFIK-KLFPYNTDEKGIT 1213
+ IP+ II N+ ++ PF+ T +VI F K + +P + +
Sbjct: 101 FHIPTVYQQESGIDFIIGNNFCQLYEPFI---QFTDRVI----FTKDRTYPVHIAKLTRA 153
Query: 1214 VQHLGKPILFKFSKPPFSKTLNIISYKEKQINFLKE--EISHKSIEVQLQQPSVKTRIGN 1271
V+ + L K ++ ++ +I L E +S + + + Q+ +I
Sbjct: 154 VRVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQRMQ---KIEE 210
Query: 1272 ILENIQSSICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEIN 1331
+LE + S D PN + ++L SD K +P++ + + K+I
Sbjct: 211 LLEKVCSENPLD-PNKTKQWMKASIKL------SDPSKAIKVKPMKYSPMDREEFDKQIK 263
Query: 1332 DLLQKKLIRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLL 1391
+LL K+I+ SKSP F VN +AE RG R+V+NYK +N+A Y PNK +LL
Sbjct: 264 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELL 323
Query: 1392 ARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIM 1451
+ KIFS F SGFWQ+ L ++ R TAFT P G YEWNV+PFGLK APS FQR M
Sbjct: 324 TLIRGKKIFSSFHCNSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHM 383
Query: 1452 NEIFNPYSNFTIVYIDDVLIFSQSIDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRF 1511
+E F + F VY+DD+L+FS + + H H+ + ++G+ +SK K LF+ KI F
Sbjct: 384 DEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 443
Query: 1512 LGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDR 1571
LG I +GT P +E +KFPD + DK QLQRFLG L Y +D+ P+L+ I K L +
Sbjct: 444 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 503
Query: 1572 LKKDPP-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILK----Q 1626
LK++ P W+ T ++++K ++ P L+ P P+ I+ETDASD +GG+LK
Sbjct: 504 LKENVPWKWTKEDTLYMQKVKKNLQAFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 563
Query: 1627 KIFDNEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKD 1686
+ + E I + S + A++NY + KE LA++ +I KF L FL+R D K
Sbjct: 564 EGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKS 623
Query: 1687 ILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTREY 1733
+ + K + RWQA LS + F++E+IKG+ N DFL+RE+
Sbjct: 624 FVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 670
>emb|CAA28360.1| unnamed protein product [Carnation etched ring virus]
gi|19919894|ref|NP_612577.1| Enzymatic polyprotein
[Contains: Aspartic protease; Endonuclease; Reverse
transcriptase] [Carnation etched ring virus]
gi|130593|sp|P05400|POL_CERV Enzymatic polyprotein
[Contains: Aspartic protease ; Endonuclease; Reverse
transcriptase ] gi|225356|prf||1301227E ORF 5
Length = 659
Score = 317 bits (813), Expect = 2e-84
Identities = 211/634 (33%), Positives = 330/634 (51%), Gaps = 34/634 (5%)
Query: 1120 LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSAA-EGSKLIIKYKIPSAI-IKNDSLE 1177
L+ DTG++ S+ +IP Y++ + L+ K+I K+ S + I+
Sbjct: 27 LDLHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIANGKIIQLTKVCSKLPIRLGGER 86
Query: 1178 IETPFLLVRNLTHKVIIGTPFIKKLFPY---------NTDEKGITVQHLGKPILF----- 1223
P L + +++G F + P+ + +++ + + + K +
Sbjct: 87 FLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGF 146
Query: 1224 -----KFSKPPFSKTLNIISYKEKQINFLKEEISHKSIEVQLQQPSVKTRIGNILENIQS 1278
K SK + +NI S Q FL+E +H + Q S + I +LE + S
Sbjct: 147 LESMKKKSKVNRPEPINITS---NQHLFLEEGGNHVDEMLYEIQISKFSAIEEMLERVSS 203
Query: 1279 SICSDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFCQKEINDLLQKKL 1338
D P + + +EL D + K +P+ + + ++I +LL+ K+
Sbjct: 204 ENPID-PEKSKQWMTATIEL------IDPKTVVKVKPMSYSPSDREEFDRQIKELLELKV 256
Query: 1339 IRRSKSPWSCATFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAK 1398
I+ SKS F V +AE RG R+V+NYK +N+A + +PNK +LL + K
Sbjct: 257 IKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKK 316
Query: 1399 IFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQR-IMNEIFNP 1457
I+S FD KSG WQ+ L ++ + TAFT P G Y+WNV+PFGLK APS F + N N
Sbjct: 317 IYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQ 376
Query: 1458 YSNFTIVYIDDVLIFSQS-IDQHFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRFLGHNI 1516
YS + VY+DD+L+FS + +H+ H+ + +K G+ +SK K LF+ KI FLG I
Sbjct: 377 YSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEI 436
Query: 1517 HQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDRLKKDP 1576
QGT P N +E KFPD+I DK QLQRFLG L Y +D+ P+L++I K L +LK+D
Sbjct: 437 DQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDS 496
Query: 1577 P-PWSDVHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILKQKIFDNEQII 1635
W+D + + +IK +K+ P LY P P ++ETDAS+ +GGILK +E I
Sbjct: 497 TWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYIC 556
Query: 1636 AFTSKHWNPAQQNYSTVKKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKDILQKDVKNL 1695
+ S + A++NY + +KE+LA++ I KF L FL+R D K+ + ++K
Sbjct: 557 RYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGD 616
Query: 1696 ASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFL 1729
+ RWQ LS +DF++E+I G+ N DFL
Sbjct: 617 RKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>gi|57547619 TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1711
Score = 310 bits (794), Expect = 3e-82
Identities = 293/1101 (26%), Positives = 503/1101 (45%), Gaps = 126/1101 (11%)
Query: 726 LSNLKCKSLGDFRWYKDTFLTRVYTREDSQQAFWK---EKFLAGLPKSFGDKVREKLRSQ 782
L ++ +L ++ K+ +Y ++Q + K E++ LP G + E+ + +
Sbjct: 636 LKEIEKLTLTSWKGIKEFSQHYLYNATTAKQGYNKGIVERYFNKLPDPLGSMIFEEYKKE 695
Query: 783 NPGGEIPYQTLSYGQLIAIIQRVALKICQDDKIQQQLTKEKSQNRRDLGTFCEQFGIQGC 842
G EI + Q I + + KIC + Q+ + K N FC +
Sbjct: 696 TEGAEI-----NISQAITFVFKQLRKICTGIQAQRSM-KHSDYN------FCNKI----- 738
Query: 843 PKKPKPRKHDPPPKQQWRRNSSRNHDHRKPKPR--------SKP--HSTQAAKNPPENRP 892
+ P D P ++ R SRN ++ K K R P H + P+
Sbjct: 739 IQIPLSYGEDRPRNKRNHRYQSRNXNNIKTKKRYFLRRSDNRAPFLHKRNVRRYNPKK-- 796
Query: 893 SQGKNVTCYNCGKPGHISRYCRLK--RRISELHLEPE---IEDKIN-NLLIQTSDEEESA 946
+ K C+ C P H+SR C K +R S + E E I D +N N+L+ + ++
Sbjct: 797 TYDKTCRCFICNSPDHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDE 856
Query: 947 SSDSEVSEDLNQIQNDDDPQSSSSINVLTNEQDLLFRAINSIPDPDE----KKIYLERLK 1002
S S + D + N++ + ++++ L ++ + + K Y +
Sbjct: 857 SIYSIIETDEIENTNEEYESTDEELDLIDELAGLKIEXMDQLNCEHDWIRGKGDYNIKCA 916
Query: 1003 FTLEDKPPKNPIT--------------TNKFNLRDTFRRLEKSTIKPVTIQDLQSEVHTL 1048
F + N +T NK R I ++ L++ ++ L
Sbjct: 917 FCIYYPSQDNRVTCSICLKQACAECIKANKQKWRKEIELESDERILSSRVRVLENRINKL 976
Query: 1049 QAEVKSLKQIQISQQLILDKLTEENSE--ESSSSSSTPNSASNNNVGDFLEIINNVIIQK 1106
+ E+++LK I + + + +N+E E + N+A + D + N I K
Sbjct: 977 EVELENLK-INYDIKALPENKDIQNTEFKEQVITLKDSNTAKIIQLKDAITNFGNKYIVK 1035
Query: 1107 --------FYINIKIIIGDFI-LETPALFDTGANSSCISEGLIPTRYFEKTTEKLSAAEG 1157
I +K+ + + + AL DTG ++ +I +YF K E + +
Sbjct: 1036 LPFKEILGIRIPVKVKLSPKVSYKILALVDTGC-----TKNIIHDKYFIKCPEIVHTIDD 1090
Query: 1158 SKLIIK------YKIPSAIIKNDSLEIE-TPFLL----VRNL---THKVIIGTPFIKKLF 1203
+K + KI + + N + I T +++ +RNL + +IIG F+++
Sbjct: 1091 NKAEVSTDMSGIKKIHNQLAHNVEVYINGTKYIIDEITIRNLSMISDDMIIGLRFLQQSV 1150
Query: 1204 PYNT-DEKGITVQHLGKPILFKFS---------KPPFSKTLNIISYKEKQINFLKEE--- 1250
E+GIT + + KP + LN+ S + L E
Sbjct: 1151 QTTVIHEQGITFIPYQNNVPYISEVRKRGGARIKPDNLEALNLESEERINEYELSENIDI 1210
Query: 1251 --ISHKSIE---VQLQQPS------VKTRIGNILENIQS-SICSDLPNAFWERKSHMVEL 1298
IS+ +IE +Q P+ K I I++ ++ I ++P +WE+ + +
Sbjct: 1211 YYISNSNIECIGLQAFAPNWYRDIKSKKDIEKIVQRLEDIQIIGEIPMKYWEKNA----I 1266
Query: 1299 PYEKDFSDKQIPTKARPIQMNEELLQFCQKEINDLLQKKLIRRSKSPWSCATFYVNKQAE 1358
+ + + + K PI+ + ++ + I +LL+ IR S+SP A F V AE
Sbjct: 1267 ECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHAE 1326
Query: 1359 IERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKD 1418
RG R+VINYK LN Y IPNK++ + R+ +K FSKFD+K+GFWQ+++ E+
Sbjct: 1327 EVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEES 1386
Query: 1419 RYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNPYSNFTIVYIDDVLIFSQSIDQ 1478
TAFT P G YEW VMP GLKNAP+ FQR M IFN F +VYIDD+LIFS++
Sbjct: 1387 IEWTAFTCPQGHYEWLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKX 1446
Query: 1479 HFKHLNTFISVIKKNGLAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQI 1538
H HL F +++NGL +SK K+ + + K+ FLGH I +G I + +FPD +
Sbjct: 1447 HIAHLELFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAM 1506
Query: 1539 IDKTQLQRFLGCLNYVADFCPQLSTIIKLLHDRLKKDPPPW-SDVHTNVVKQIKLRIKNL 1597
DK +LQ+FLG +NY + L+ + L+ +L+K+ + + +V+ IK ++K L
Sbjct: 1507 NDKKKLQQFLGLVNYARNHINNLAKLAGPLYAKLRKNGQKYFNSEDIKLVRLIKEKVKEL 1566
Query: 1598 PCLYLPNPQAFKIVETDASDIGFGGILKQK-----IFDNEQIIAFTSKHWNPAQQNYSTV 1652
L LP +++ I+ETDAS G+G ILKQ+ E+I + S + + +
Sbjct: 1567 KPLELPLEESYFIIETDASQQGWGAILKQRPTKFSAKSEEKICRYASGSYK--LKTVNNT 1624
Query: 1653 KKEVLAIVLSISKFQYDLINQTFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFD 1712
+E++AI+ +I+ F+ L + F VR DC++ + +S + ++ I++
Sbjct: 1625 DREIMAIINAINAFRLYLGFKEFTVRTDCEAICRYYNQLNSKKSSTRRWILFEDIITGNG 1684
Query: 1713 FEI--EYIKGSTNSLPDFLTR 1731
+ + E+IKG NSLPD L+R
Sbjct: 1685 YRVIFEHIKGKDNSLPDMLSR 1705
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.339 0.149 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,765,531,020
Number of Sequences: 2540612
Number of extensions: 115897251
Number of successful extensions: 741064
Number of sequences better than 10.0: 36982
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 33413
Number of HSP's that attempted gapping in prelim test: 676398
Number of HSP's gapped (non-prelim): 60970
length of query: 1733
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1591
effective length of database: 502,593,490
effective search space: 799626242590
effective search space used: 799626242590
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 83 (36.6 bits)
Lotus: description of TM0101.14