BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0096b.4
(1566 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsi... 1187 0.0
gb|AAO23078.1| polyprotein [Glycine max] 1173 0.0
dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thalia... 1073 0.0
gb|AAL75999.1| putative polyprotein [Zea mays] 1072 0.0
gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cul... 1060 0.0
ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|1545160... 1060 0.0
ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sa... 1050 0.0
emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultiva... 1026 0.0
ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cu... 1020 0.0
emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar... 1014 0.0
gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cult... 1003 0.0
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 991 0.0
gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cult... 990 0.0
gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japon... 978 0.0
gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidop... 969 0.0
gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana] 968 0.0
gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] 967 0.0
ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cu... 958 0.0
gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japon... 911 0.0
ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|1545160... 869 0.0
>gb|AAF13073.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 1187 bits (3070), Expect = 0.0
Identities = 643/1448 (44%), Positives = 883/1448 (60%), Gaps = 60/1448 (4%)
Query: 97 KKVELPMFDGDDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENL 156
+ V+ P ++G + W+ R E F T E + A C+ G ++ ++ E+
Sbjct: 229 RTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEEKLEKAVSCLTGASVTWWRCSKDREQIY 288
Query: 157 TWERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYF 216
TW F+ + R+ + L +RQ GTVEEY FE LT +P + F
Sbjct: 289 TWREFQEKFMLRFRPSRGSSAVDHLLNVRQTGTVEEYRERFEELTVDLPHVTSDILESAF 348
Query: 217 LHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANR 276
L+GL+ +R +V V ++ I++IA+ +E +
Sbjct: 349 LNGLRRSLRDQV---VRCRPVNLADIVEIAKLIESQ------------------------ 381
Query: 277 SGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPE-KNRSTPRDRGFTHLSY 335
R++ V+ TN+ N G QP +R T R G
Sbjct: 382 ---ERNAVSYQVRNQARTNTAPFNNQVSTGSRVVDRAPTRQPFIPSRDTTRASGSG---- 434
Query: 336 NELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEES-- 393
E R C CG + H+C ++L+ L + +E E+E E + EEE
Sbjct: 435 ----EARNSNPCRYCGDRWFQGHKCKPQKLKGLAITEEVEEESPLIEELNEPLTEEEGDP 490
Query: 394 --SEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGK 451
+EG M+LS + ++ Q++K+ G I +V+L+DSGAT NF+S +LV + G
Sbjct: 491 EPAEG-FKVMTLSSLNDESQE--QSMKMRGYIGNTKVVLLVDSGATCNFISEALVREKGW 547
Query: 452 TVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTL 511
V T S + +G G ++ GKC ++ + D LF+LG++D+VLG WL L
Sbjct: 548 LVTQTRSFGVKVGGGRIIKSSGKCVDIPLEVQGIEFVQDYYLFDLGDLDLVLGFSWLAGL 607
Query: 512 GDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSG--YLGKEKVQLEK 569
G+ NW +S+ G WV+L G + +++++M ++G YL + E
Sbjct: 608 GETRANWRDLRISWQIGRTWVSLYGDPDLCRGQISMRSMERVIKYTGTAYLLELASLFES 667
Query: 570 DNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQ 629
+ Q + +L+++ VFQ P+ LPP RN++HAITL+EG PVN+RPYRY Q
Sbjct: 668 KKQEEQTALQPAIQRLLDQYQGVFQTPQLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQ 727
Query: 630 KNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPI 689
KNEIE V+E+L +IR S S +SSPV+LVKKKD WR CVDYRALN+ATIPDK+PIP+
Sbjct: 728 KNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPV 787
Query: 690 IEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPST 749
IEELLDEL GA FSKLDLKSGY Q+R+K DV KTAF+THEGHYEFLVMPFGL NAPST
Sbjct: 788 IEELLDELKGATVFSKLDLKSGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPST 847
Query: 750 FQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFG 809
FQS+MND+FR LRK VLVFFDDILVYS D +HL+HL+ VL +L AN KKC FG
Sbjct: 848 FQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHLKHLETVLQLLHLHQFYANFKKCTFG 907
Query: 810 REKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAK 869
++ YLGH+IS QGV DP KVE++ WP PK+V +RGFLG TGYYR+F+++YG+IA+
Sbjct: 908 STRISYLGHIISEQGVATDPEKVEAMLQWPLPKSVTELRGFLGFTGYYRRFVKNYGQIAR 967
Query: 870 PLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQ 929
PL + KKN F+W+E A AF+ LK ++ PVL LPDF +EFT+E DASG+G+GA+L Q
Sbjct: 968 PLRDQLKKNSFDWNEAATSAFQALKAAVSALPVLVLPDFQQEFTVETDASGMGIGAVLSQ 1027
Query: 930 EKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQ 989
KR IA+ S+A + +S YE+EL+A+ A+ W+ YL + F + TDQRSL+ LL+Q
Sbjct: 1028 NKRLIAFLSQAFSSQGRIRSVYERELLAIVKAVTKWKHYLSSKEFIIKTDQRSLRHLLEQ 1087
Query: 990 KVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMG-SHVDWLGGKDL 1048
K V+ QQ WA+KL G + I YKPG NK ADALSR T L Q+ + + L
Sbjct: 1088 KSVSTIQQRWASKLSGLKYRIEYKPGVDNKVADALSRRPPTEALSQLTITGPPTIDLTAL 1147
Query: 1049 KEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTP 1108
K E+ +D EL +I+K+ + +T +G++ +G LV+P SP I ML +FHT+P
Sbjct: 1148 KAEIQQDHELSQILKNWAQGDHHDSDFTVADGLIYRKGCLVIPVGSPFIPKMLEKFHTSP 1207
Query: 1109 QGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERI 1168
GGH G +T++RL + VYWRG++ V +++K C +CQ KY SP GLL PLPIP++I
Sbjct: 1208 IGGHEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPIPQQI 1267
Query: 1169 WEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGV 1228
W D+S+DF+ GLP S F ILVVVDRLSKY+HFIPLKHP+TAK+V E F +++V+LHG
Sbjct: 1268 WSDVSLDFVEGLPSSNRFNCILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGF 1327
Query: 1229 PSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQ 1288
P+++VSDRD IF+S FW ELFKLQGT L+ STAYHP++DGQ+EVVNRCLE+YLRCF +
Sbjct: 1328 PNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRR 1387
Query: 1289 PKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERD 1348
P +W W+PWAEYWYNT +H++T TPF+ VYGR PP + R+ T V++ L +RD
Sbjct: 1388 PTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRD 1447
Query: 1349 EALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKY 1408
L +LR L AQ +MK+ AD+ R D +F I EWV++KLR +RQ SV R KL+ +Y
Sbjct: 1448 GMLVELRENLEIAQAQMKKAADKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRY 1507
Query: 1409 YGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEEL-----PDLEGDGG 1463
+GP+ V+ R+G VAY+L+LP S +HPVFHVS LK+AV +EL P LE + G
Sbjct: 1508 FGPFKVLHRIGQVAYKLQLPEHSTIHPVFHVSQLKRAVPPSFTPQELPKILSPTLEWNTG 1567
Query: 1464 ILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAY 1523
P ++L R Q S ++L+QW G E+TWE + + Q+P F LEDK
Sbjct: 1568 ----PEKLLDIR--QSNTNSGPEVLVQWSGLSTLESTWEPLLTLVQQYPDFDLEDKVSLL 1621
Query: 1524 GEGIDRTQ 1531
IDR Q
Sbjct: 1622 RGSIDRLQ 1629
>gb|AAO23078.1| polyprotein [Glycine max]
Length = 1552
Score = 1173 bits (3035), Expect = 0.0
Identities = 628/1465 (42%), Positives = 898/1465 (60%), Gaps = 48/1465 (3%)
Query: 70 ADHGSGSGKGSMTRLTGDVLSEFRQSAKKVELPMFDGDDPAGWISRAEVYFRVQDTPPEV 129
+ HG+ + + R S F+ + K++ P FDG + WI +AE +F TP
Sbjct: 77 SSHGASNSQKEQQR------SSFQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDAD 130
Query: 130 RASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYGGQGDGDVYEQLTELRQRGT 189
R +A + ++ + ++ L E +W+ F AL +G L +L Q T
Sbjct: 131 RLIIASVHLDQDVVPWYQMLQKTEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSAT 190
Query: 190 VEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSRMKILQIARAV 249
V EY F L ++ L + L F+ GL+ EI R + M + K + +A+
Sbjct: 191 VNEYYMQFTALVNRVDGLSAEAILDCFVSGLQEEIS---RDVKAMEPRTLTKAVALAKLF 247
Query: 250 ERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNG 309
E + + P ++ N A SN S+ + +++ N N
Sbjct: 248 EEK--------YTSPPKTKTFSNLARNFTSNTSATQKYPPTNQK--------NDNPKPNL 291
Query: 310 PRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLI 369
P P R++ +S E+ RR+K LC+ C F P H+CP++Q+ +L
Sbjct: 292 P--PLLPTPSTKPFNLRNQNIKKISPAEIQLRREKNLCYFCDEKFSPAHKCPNRQVMLLQ 349
Query: 370 MEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIV 429
+E+ +E + ++ + EE + + + +SL+ + G + TI+ G + G+ +
Sbjct: 350 LEETDEDQTDEQVM----VTEEANMDDDTHHLSLNAMR--GSNGVGTIRFTGQVGGIAVK 403
Query: 430 ILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCV 489
IL+D G++ NF+ + L V P+LR+ +G+G +G ++L + + V
Sbjct: 404 ILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGIVQQLPLHIQGQEVKV 463
Query: 490 DAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQ- 548
L ++ D++LG WL TLG + ++ T+ F+ K++TLQG E L
Sbjct: 464 PVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITLQGEGNSEATQAQLHH 523
Query: 549 ------TMISRAGFSGYLGKEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPK 602
T F+ L +++V E K + EL ++L ++ VF P LPP+
Sbjct: 524 FRRLQNTKSIEECFAIQLIQKEVP-EDTLKDLPTNIDPELAILLHTYAQVFAVPASLPPQ 582
Query: 603 RNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKK 662
R + HAI LK+G GPV VRPYRYPH QK++IE ++E+L G+I+ S S FS P++LVKK
Sbjct: 583 REQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQPSNSPFSLPILLVKK 642
Query: 663 KDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDV 722
KD SWR C DYRALN T+ D FP+P ++ELLDELHGA+YFSKLDL+SGYHQ+ V+ ED
Sbjct: 643 KDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLDLRSGYHQILVQPEDR 702
Query: 723 HKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPS 782
KTAFRTH GHYE+LVMPFGL NAP+TFQ LMN IF+ LRK VLVFFDDIL+YS W
Sbjct: 703 EKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILIYSASWKD 762
Query: 783 HLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPK 842
HL+HL+ VL L++ L A KC FG +V+YLGH +SG GV ++ +KV++V WPTP
Sbjct: 763 HLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPN 822
Query: 843 NVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPV 902
NVK +RGFLGLTGYYR+FI+ Y IA PLT+L +K+ F W+ +A+ AF LKK +T +PV
Sbjct: 823 NVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPV 882
Query: 903 LALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAI 962
L+LPDFS+ F +E DASG+GVGA+L Q PIAYFSK L R +SAY +EL+A+ A+
Sbjct: 883 LSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEAL 942
Query: 963 QHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGAD 1022
+R YLLG F + TDQRSLK L+ Q + T EQQ W K LG+DF+I YKPGK N+ AD
Sbjct: 943 SKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAAD 1002
Query: 1023 ALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGIL 1082
ALSR+ L H +L ++L+ + D L++++++ + D+S YT G+L
Sbjct: 1003 ALSRM---FMLAWSEPHSIFL--EELRARLISDPHLKQLMETYKQGADAS-HYTVREGLL 1056
Query: 1083 LYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQC 1142
++ R+V+P E +++ +L E+H++P GGH+G RT RL A YW M+ V+ ++++C
Sbjct: 1057 YWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKC 1116
Query: 1143 DVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHF 1202
+CQ+ K + P GLLQPLPIP+++WED++MDFITGLP S G I+VV+DRL+KYAHF
Sbjct: 1117 LICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHF 1176
Query: 1203 IPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAY 1262
IPLK Y +K VAE F IV+LHG+P SIVSDRD +F S FW+ LFKLQGT L MS+AY
Sbjct: 1177 IPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAY 1236
Query: 1263 HPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGR 1322
HP+SDGQSEV+N+CLE YLRCF + PK WV +PWAE+WYNT +H S G+TPF +YGR
Sbjct: 1237 HPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGR 1296
Query: 1323 PPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGE 1382
PPT+TR V+++L +RD L +L++ L RAQ MK+ AD+KR D SF IG+
Sbjct: 1297 EPPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGD 1356
Query: 1383 WVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLL 1442
V VKL+ +RQ S V R KL+ +Y+GP+ V+A++G VAY+L+LP +++HPVFHVS L
Sbjct: 1357 EVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQL 1416
Query: 1443 KKAVGTYHEGE-ELPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATW 1501
K GT + LP + G +++P ++LA+R + I+QIL+QW+ +EATW
Sbjct: 1417 KPFNGTAQDPYLPLPLTVTEMGPVMQPVKILASRIIIRGHNQIEQILVQWENGLQDEATW 1476
Query: 1502 EDVDMIKSQFPSFCLEDKARAYGEG 1526
ED++ IK+ +P+F LEDK GEG
Sbjct: 1477 EDIEDIKASYPTFNLEDKVVFKGEG 1501
>dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana]
gi|12322008|gb|AAG51046.1| gypsy/Ty-3 retroelement
polyprotein; 69905-74404 [Arabidopsis thaliana]
Length = 1499
Score = 1073 bits (2774), Expect = 0.0
Identities = 615/1546 (39%), Positives = 893/1546 (56%), Gaps = 91/1546 (5%)
Query: 5 RQNKGASKEMEAKIATLEAELSGVKSTLTTMERNQ----ETLIALLEKSIGKTKVDDDST 60
++ G KE+E ++ L++ ++ +++T+ + L A+L +S VD+ ST
Sbjct: 7 QEGDGKGKEVELEVP-LDSRVTRLETTVAEQHKEMMKQFADLYAVLSRSTAGKMVDEQST 65
Query: 61 GDNVTPAKEADHGSGSGKGSMTR------LTGDVLSEFRQSAK--KVELPMFDGDDPAGW 112
D P + SG R + D + + + K++ P FDG W
Sbjct: 66 LDRSAPRSSQSMENRSGYPDPYRDARHQQVRSDHFNAYNNLTRLGKIDFPRFDGTRLKEW 125
Query: 113 ISRAEVYFRVQDTPPEVRASLAQLCMEG--PTIH--FFNSLLSEEENLTWERFKCALLER 168
+ + E +F V TP +++ +A + + T H F S + E W+ + L ER
Sbjct: 126 LFKVEEFFGVDSTPEDMKVKMAAIHFDSHASTWHQSFIQSGVGLEVLYDWKGYVKLLKER 185
Query: 169 YGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRV 228
+ D D +L L++ + +Y FE + ++ L E+ + +L GL+ + + V
Sbjct: 186 FEDDCD-DPMAELKHLQETDGIIDYHQKFELIKTRV-NLSEEYLVSVYLAGLRTDTQMHV 243
Query: 229 RSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDWVFV 288
R + L + + E+ + +P ++ NR+ +G +
Sbjct: 244 RMFQPQ---TVRHCLFLGKTYEK-------AHPKKPANTTWSTNRSAPTGG-------YN 286
Query: 289 KGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCF 348
K KE S + + G G QP+K +S E+ +RR KGLC+
Sbjct: 287 KYQKEGESKTDHY----GNKGNFKPVSQQPKK------------MSQQEMSDRRSKGLCY 330
Query: 349 KCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQ 408
C + P H K+ ++ M+ +EE E E++ +++ ++S ++S +
Sbjct: 331 FCDEKYTPEHYLVHKKTQLFRMDVDEEFEDARE----ELVNDDDEHMPQISVNAVSGIAG 386
Query: 409 VGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQ 468
+T+++ G I ILIDSG+THNF+ + KLG V R+++ DG +
Sbjct: 387 Y-----KTMRVKGTYDKKIIFILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVADGRK 441
Query: 469 ARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSG 528
R +GK + D L L +DMVLG++WL TLG + + K M F
Sbjct: 442 LRVEGKVTDFSWKLQTTTFQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFN 501
Query: 529 HKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQL-----EKDNKGVTGV------ 577
++ V L G V Q + L +++VQL ++ ++ G
Sbjct: 502 NQKVLLHGLTSGSVREVKAQKLQK-------LQEDQVQLAMLCVQEVSESTEGELCTINA 554
Query: 578 ------QQAELDMILERHSVVFQAPKGLPPKRNKQ-HAITLKEGEGPVNVRPYRYPHHQK 630
+++ ++ +L + +F P LPP R K H I L EG PVN RPYRY HQK
Sbjct: 555 LTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQK 614
Query: 631 NEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPII 690
NEI+ V++LL G ++ S+S ++SPV+LVKKKD +WR+CVDYR LN T+ D FPIP+I
Sbjct: 615 NEIDKLVEDLLTNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLI 674
Query: 691 EELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTF 750
E+L+DEL GA FSK+DL++GYHQVR+ +D+ KTAF+TH GH+E+LVMPFGL NAP+TF
Sbjct: 675 EDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATF 734
Query: 751 QSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGR 810
Q LMN IF+ LRK VLVFFDDILVYS H +HL++V ++R L A KC F
Sbjct: 735 QGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAV 794
Query: 811 EKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKP 870
KVEYLGH IS QG+E DP+K+++V WP P +K +RGFLGL GYYR+F+R +G IA P
Sbjct: 795 PKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGP 854
Query: 871 LTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQE 930
L LTK + FEW+ AQ+AFE LK L +PVL+LP F K+F +E DA G G+GA+LMQE
Sbjct: 855 LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE 914
Query: 931 KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQK 990
P+AY S+ L + L S YEKEL+A+ A++ WR YLL HF + TDQRSLK LL+Q+
Sbjct: 915 GHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQR 974
Query: 991 VVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRV--NETLELRQMGSHVDWLGGKDL 1048
+ T QQ W KLL FD+EI Y+ GK N ADALSRV +E L + D L KD+
Sbjct: 975 LNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLL--KDI 1032
Query: 1049 KEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTP 1108
+ + D +LQ II ++ DS +++ IL + ++V+P + +T+L H +
Sbjct: 1033 QAGYANDSQLQDIITALQRDPDSKKYFSWSQNILRRKSKIVVPANDNIKNTILLWLHGSG 1092
Query: 1109 QGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERI 1168
GGHSG T++R+ YW+GM +Q +++ C CQ+ K ++ GLLQPLPIP+ I
Sbjct: 1093 VGGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTI 1152
Query: 1169 WEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGV 1228
W ++SMDFI GLP S G I+VVVDRLSK AHFI L HPY+A +VA + + +LHG
Sbjct: 1153 WSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGC 1212
Query: 1229 PSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQ 1288
P+SIVSDRD +F S FWRE F LQG LK+++AYHP+SDGQ+EVVNRCLETYLRC D+
Sbjct: 1213 PTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDR 1272
Query: 1289 PKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERD 1348
P+ W W+ AEYWYNT +H+S+ +TPFE+VYG+ PP ++ GE++V V + L ER+
Sbjct: 1273 PQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQERE 1332
Query: 1349 EALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKY 1408
+ L L+ L RAQ RMKQFAD+ R++R F IG++V+VKL+ +RQ+SVV R KL+ KY
Sbjct: 1333 DMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKY 1392
Query: 1409 YGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIEP 1468
+GPY ++ R G VAY+L LP S+VHPVFHVS LK VG LP + D + P
Sbjct: 1393 FGPYKIIDRCGEVAYKLALPSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQDVFEKV-P 1451
Query: 1469 TEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSF 1514
+V+ + V QG+++ ++L++W + EEATWE + ++ FP F
Sbjct: 1452 EKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFPEF 1497
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 1072 bits (2772), Expect = 0.0
Identities = 603/1452 (41%), Positives = 821/1452 (56%), Gaps = 105/1452 (7%)
Query: 98 KVELPMFDGD-DPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENL 156
K++ P +DG DP W+++ E +FR Q T R LA ++G ++ +L +E
Sbjct: 472 KIDFPTYDGSVDPLNWLNQCEQFFRGQRTLVTDRTWLASYHLKGAAQTWYYALEQDEGMP 531
Query: 157 TWERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYF 216
TW RFK R+G G +L L TV++Y F + +L +Q F
Sbjct: 532 TWGRFKEVCTLRFGPPVRGTRLSELARLPFTSTVQDYADRFNAMLGHTRKLDAQQKAELF 591
Query: 217 LHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANR 276
+ GL IR V ++ DL + +ARA E+ AR
Sbjct: 592 VGGLPDHIRADV-AIRDPQDLQ--SAMYLARAFEQRAAAQTTPPPAR------------- 635
Query: 277 SGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQP----EKNRSTPRDRGFTH 332
G+ SR G P A P + + R F
Sbjct: 636 ----------------------GFRQSRPGLPAPPRPLTAPPTAAAQPAGTAAPARPFRR 673
Query: 333 LSYNELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIME-----DEEEKEGGGNLLAVEV 387
L+ E ERR++GLCF C + H CP R+ +E D+E +E G +L
Sbjct: 674 LTPAEQQERRRQGLCFNCDEPYVRGHVCP----RLFYLENDDYIDDEPQEEGADLQIA-- 727
Query: 388 IEEEESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVH 447
+E+E S ++S G P + L I G +V L+DSG+T NF+S L+
Sbjct: 728 LEQEPPSRAAAIIPTVSLHALAGVRTPNAMLLPVSINGHRLVALVDSGSTTNFMSVGLMS 787
Query: 448 KLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEW 507
+L P++++ + +G +G + + + G +D LG D++LG E+
Sbjct: 788 RLQLPSTPHPTIKVQVANGDNIPCQGMARSVDLRVGTEQFSIDCIGLTLGTFDVILGFEF 847
Query: 508 LRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQL 567
LR LG ++ + D+ +MSF G + + G G G + +
Sbjct: 848 LRLLGPILWDCDRLSMSFTKGGRHIIWSG-----------------LGAPGAVPPQPAAC 890
Query: 568 EKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPH 627
+ Q LD +L + +VF P+GLPP R H I L G PV VRPYRYP
Sbjct: 891 VVSSTPT----QPLLDDLLRQFELVFAEPQGLPPARPYDHRIHLLPGAAPVAVRPYRYPQ 946
Query: 628 HQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPI 687
QK+E+E Q +L G+IR STS FS+PV+LV+K D+SWR C+DYRALN T DKFPI
Sbjct: 947 LQKDELERQCSAMLAQGIIRPSTSPFSAPVLLVRKPDNSWRFCIDYRALNAKTSKDKFPI 1006
Query: 688 PIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAP 747
P+++ELLDELHGA +F+KLDL+SGYHQVR+ DV KTAFRTHEGHYEFLVMPFGL NAP
Sbjct: 1007 PVVDELLDELHGAHFFTKLDLRSGYHQVRMHPADVEKTAFRTHEGHYEFLVMPFGLSNAP 1066
Query: 748 STFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCL 807
+TFQ+LMND+ R LRK VLVFFDDIL+YSK W HL+H+ VL LR+ L R KC
Sbjct: 1067 ATFQALMNDVLRPYLRKYVLVFFDDILIYSKTWAEHLQHISIVLHALRDHQLHLKRSKCS 1126
Query: 808 FGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKI 867
FG V YLGH+IS GV +D +KVE+V+SWP P + +G+RGFLGL GYYRKFIRD+G I
Sbjct: 1127 FGARSVAYLGHVISAAGVAMDAAKVEAVSSWPAPHSARGLRGFLGLAGYYRKFIRDFGVI 1186
Query: 868 AKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAIL 927
A PLT L +++ F W + Q AF+ LK LTT PVL +P+F K F ++CDASG G GA+L
Sbjct: 1187 AAPLTRLLRRDAFTWDDDTQAAFQQLKTALTTGPVLQMPNFEKTFVVDCDASGTGFGAVL 1246
Query: 928 MQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELL 987
Q P+A+FS+ R+L +AYE+EL+ L A++HWRPYL GRHF V TD SLK LL
Sbjct: 1247 HQGAGPVAFFSRPFVTRHLKLAAYERELIGLVQAVRHWRPYLWGRHFAVRTDHYSLKYLL 1306
Query: 988 QQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMG---------- 1037
Q++ T+ Q W +KL GFDFE+ Y+PG+LN ADALSR + L G
Sbjct: 1307 DQRLSTVPQHQWLSKLFGFDFEVEYRPGRLNVAADALSRRDAELLQPSAGELGAAAALAL 1366
Query: 1038 SHVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLI 1097
S + D++ + + R+ + + + + + E+G+LL+ R+ +P L
Sbjct: 1367 SGPSFAFLDDIRRATATSPDSSRLCQQLQD-GTLTAPWRLEDGLLLHGSRIYVPNHGDLR 1425
Query: 1098 HTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGG 1157
H + H+ GH G +T RL A Y G ++ V D+V+ C CQR K P G
Sbjct: 1426 HQAILLAHS---AGHEGIQKTLHRLRAEFYVPGDRTLVADWVRTCTTCQRNKTETLQPAG 1482
Query: 1158 LLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEV 1217
LLQPL +P ++W D+SMDFI GLPK G IL VVDR SKYAHFIPL HPYTA SVA
Sbjct: 1483 LLQPLQVPSQVWADISMDFIEGLPKVGGKSVILTVVDRFSKYAHFIPLGHPYTAASVARA 1542
Query: 1218 FGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCL 1277
F IVRLHG PSSIVSDRDP+F + WR+LFK G L+MSTA+HP++DGQSEVVN+ +
Sbjct: 1543 FFDGIVRLHGFPSSIVSDRDPVFTGHVWRDLFKCAGVSLRMSTAFHPQTDGQSEVVNKVI 1602
Query: 1278 ETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRV 1337
YLRC D+P+ WV W+ WAEY YNT FH + TPFEVVYGRPPP I + G R
Sbjct: 1603 AMYLRCVTGDRPRAWVDWLSWAEYCYNTSFHTALRATPFEVVYGRPPPPILPYQAGSART 1662
Query: 1338 EAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVV 1397
A ++ L +RD L ++R +L +AQ K++ D D + G+WV+++L +S+
Sbjct: 1663 AAAEELLRDRDNILAEVRQRLVQAQQLSKRYYDAGHRDMELADGDWVWLRLLHRPVQSLE 1722
Query: 1398 TRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEE--- 1454
R KL +Y GP+ V+ R+G VAY+L+LP G+++H VFHV LLK+ H+GE
Sbjct: 1723 PRAKGKLGPRYAGPFRVLERIGKVAYRLELPEGARLHDVFHVGLLKR-----HKGEPPEQ 1777
Query: 1455 ---LPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQF 1511
LP ++ +G +L P +VL + Q + IL+QW+G PEEATWE +D + +
Sbjct: 1778 RAGLPPVQ-NGRLLPAPLKVLRAQ----QRRGTWHILVQWQGLSPEEATWEPLDDFRGLY 1832
Query: 1512 PSFCLEDKARAY 1523
P F LED+ A+
Sbjct: 1833 PDFQLEDELFAH 1844
>gb|AAP52878.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532578|ref|NP_920591.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217201|gb|AAK92545.1| Putative retroelement [Oryza
sativa]
Length = 1476
Score = 1060 bits (2742), Expect = 0.0
Identities = 619/1510 (40%), Positives = 836/1510 (54%), Gaps = 89/1510 (5%)
Query: 28 VKSTLTTMERNQETLIALLEKSIGKTKVDDDSTGDNVTPAKEADHGSGSGKGSMTRLTGD 87
+KSTL T+ + TL +L S TK +D+T A A + + + + T +G
Sbjct: 5 LKSTLETLAK---TLASLQSSSEATTKAIEDNT-----QAIAALSVARTTEKASTESSGT 56
Query: 88 VLSEFRQSAKKVELPMFDGD-DPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFF 146
+ + E P +DG DP +I+R E +F Q P R +A ++ ++
Sbjct: 57 PAPDRPPKHWRPEFPKYDGKTDPLAFINRCESFFIQQHVIPAERTWMASYNLQDGAQLWY 116
Query: 147 NSLLSEEENLTWERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPR 206
+ E TWERFK L RYG +L+ R+ TVE+Y F+ L + R
Sbjct: 117 MHVQDNEGTPTWERFKELLNLRYGPPLRSVPLFELSACRRTSTVEDYQDRFQALLPRAGR 176
Query: 207 LPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTR 266
L E Q + F GL + +V+ S + + +AR E
Sbjct: 177 LEEAQQVQLFTGGLLPPLSLQVQQQ---KPASLEEAMSLARQFEL--------------- 218
Query: 267 SSLGGNRANRSGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPR 326
++F T S G + A P +P T
Sbjct: 219 ---------------MEPYLF----PATTSARGVLPTPAPR--PSTGPVVKPAPATVTVE 257
Query: 327 DRGFTHLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVE 386
R LS + ERR+ GLC+ C + H K+L + EGG +
Sbjct: 258 GRPVKRLSQAQQEERRRLGLCYNCDEKYSRSHNKVCKRLFFV--------EGGAIEEGDD 309
Query: 387 VIEEE-ESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSL 445
+E++ E + E SL V + KP I L + +V L+D+G+THNF+
Sbjct: 310 TVEDDTEEATVEAPVFSLHAVAGIPLGKP--ILLQVTLGAASLVALVDTGSTHNFIGEDA 367
Query: 446 VHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGI 505
+ G V P L T+ +G + G + I VD + L DMVLG
Sbjct: 368 ALRTGLPVQPRPRLTATVANGEKVSCPGVLRRAPITIQGMAFDVDLYVMPLAGYDMVLGT 427
Query: 506 EWLRTLGDMIVNWDKKTMSFWSGHK-----WVTLQGHEEQEGLLVALQTMISRAGFSGYL 560
+W+ LG I WD T + H+ W +L H+ + V+ T + A S
Sbjct: 428 QWMAHLGTTIA-WDVTTGTVSFQHQGRTVSWQSLPPHQRADVHAVSTGTSLVAATGSS-- 484
Query: 561 GKEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNV 620
+ + A LD +L VF P+GLPP R + HAI L G PV V
Sbjct: 485 ---------SSTPAPTTEPALLDGLLGSFDDVFAEPRGLPPPRGRDHAIHLLPGAPPVAV 535
Query: 621 RPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKAT 680
RPYRYP K+E+E Q ++E G+IR STS+FSSPV+LVKK D SWR CVDYRALN T
Sbjct: 536 RPYRYPVAHKDELERQCAVMMEQGLIRRSTSAFSSPVLLVKKADGSWRFCVDYRALNAIT 595
Query: 681 IPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMP 740
I D +PIP+++ELLDELHGA++F+KLDL+SGYHQVR++ EDV KTAFRTH+G YEFLVMP
Sbjct: 596 IKDAYPIPVVDELLDELHGAKFFTKLDLRSGYHQVRMRAEDVAKTAFRTHDGLYEFLVMP 655
Query: 741 FGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLV 800
FGL NAP+TFQ+LMNDI R LR+ VLVFFDDIL+YS W HL H++ VL +LR+ L
Sbjct: 656 FGLCNAPATFQALMNDILRIYLRRFVLVFFDDILIYSNTWADHLRHIRAVLLLLRQHRLF 715
Query: 801 ANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKF 860
R KC FG + YLGH+I GV +DP+KV++V WP P++ + VRGFLGL GYYRKF
Sbjct: 716 VKRSKCAFGVSSISYLGHIIGATGVSMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKF 775
Query: 861 IRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASG 920
+ DYG IA PLT LTKK GF WS++ AF LK +TT+PVLALPDF K F +ECDAS
Sbjct: 776 VHDYGTIAAPLTALTKKEGFRWSDEVATAFHALKHAVTTAPVLALPDFVKPFVVECDAST 835
Query: 921 VGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQ 980
G GA+L+Q+K P+A+FS+ + R+ + +AYE+EL+ L LAI+HWRPYL GR F V TD
Sbjct: 836 HGFGAVLLQDKHPLAFFSRPVAPRHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDH 895
Query: 981 RSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSR--VNETLELRQMGS 1038
SLK LL Q++ T+ Q +W KLLGFDF + YK G N ADALSR +E L
Sbjct: 896 YSLKYLLDQRLATIPQHHWVGKLLGFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAP 955
Query: 1039 HVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIH 1098
D++ + E I+ + S + +G+++++ RL +P SPL+H
Sbjct: 956 RFDYI---ERLRAAQTTEPALVAIRDAIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLH 1012
Query: 1099 TMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGL 1158
+L HT GH G RT RL + + M+ VQ+FV+ CD CQR K PGGL
Sbjct: 1013 EILAAIHT---DGHEGVQRTLHRLRRDFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGL 1069
Query: 1159 LQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVF 1218
L PLP+P +W D+ +DF+ LP+ G IL VVDR SKY HFIPL HPYTA+SVA+ F
Sbjct: 1070 LLPLPVPTTVWADIGLDFVEALPRVGGKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAF 1129
Query: 1219 GKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLE 1278
+IVRLHG+P S+VSDRDP+F S+FWREL +L GTK+ M+TA HP+SDGQ+E N+ +
Sbjct: 1130 YADIVRLHGIPQSMVSDRDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIV 1189
Query: 1279 TYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVE 1338
YLRCF D+P+ WV W+PWAEY YNT + S TPF VVYGR PP I + GETRV
Sbjct: 1190 MYLRCFTGDRPRQWVRWLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVA 1249
Query: 1339 AVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVT 1398
AV + + +RDE L +R +L +AQ K++ D+ S+ +G+ V ++LR S+
Sbjct: 1250 AVARSMADRDEFLADVRYRLEQAQATHKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQ 1309
Query: 1399 RIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDL 1458
KL +Y+GPY VV + VA +L+LPP +K+H VFHV LLKK VG
Sbjct: 1310 VSKGKLKPRYFGPYRVVEVINPVAVRLELPPRAKLHDVFHVGLLKKFVGAAPPSPPALPA 1369
Query: 1459 EGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLED 1518
G I EP V +R + ++Q+L+ WKG+ ATWED+D K ++P+F LED
Sbjct: 1370 VHHGAIDPEPERVTRSRL----ARGVRQVLVHWKGESAASATWEDLDTFKERYPAFQLED 1425
Query: 1519 KARAYGEGID 1528
+ A EG D
Sbjct: 1426 EL-ALEEGRD 1434
>ref|XP_470219.1| Putative retroelement [Oryza sativa] gi|15451607|gb|AAK98731.1|
Putative retroelement [Oryza sativa]
Length = 1461
Score = 1060 bits (2740), Expect = 0.0
Identities = 590/1436 (41%), Positives = 825/1436 (57%), Gaps = 95/1436 (6%)
Query: 100 ELPMFDG-DDPAGWISRAEVYFRVQDTPPEVRASLAQL-CMEGPTIHFFNSLLSEEENLT 157
+ P +DG DP +I+R E +F Q E + +A +EG + + E T
Sbjct: 70 DFPHYDGKSDPLIFINRCESFFLQQRIMQEEKVWMASHNLLEGAQLWYMQVQEDERGTPT 129
Query: 158 WERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFL 217
W RFK L RYG +L+ R+ GTVE+Y F+ L + RL E+Q + F
Sbjct: 130 WTRFKELLNLRYGPPLRSAPLFELSSCRRTGTVEDYQDRFQALLPRAGRLDEEQRVQLFT 189
Query: 218 HGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRS 277
GL + +V+ + + M + + +E+ T A P ++ G +
Sbjct: 190 GGLLPPLSLQVQMQNPQSLAAAMSLARQFELIEQYT--------AVPAKAP--GRGVLPA 239
Query: 278 GSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRD-RGFTHLSYN 336
+ R + P A+P +T D R L+
Sbjct: 240 PAPRPQLAL-----------------------PAPAGAAKPAPPAATAADNRPVRRLNQA 276
Query: 337 ELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEG 396
E ERR+ GLCF C + H K+L + ++E++E E+ +
Sbjct: 277 EQEERRRLGLCFNCDEKYSRGHNKVCKRLFFVDSVEDEDEEA-----------PEDEVDA 325
Query: 397 ELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDT 456
E SL V V P +++ + +V L+D+G+THNF+ S + G +V
Sbjct: 326 EAPVFSLHAVAGVAVGHPILLRVQ--LGATTLVALVDTGSTHNFIGESAAARTGLSVQPR 383
Query: 457 PSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIV 516
P + T+ +G + G + I P VD + L D+VLG +W+ LG M
Sbjct: 384 PRMTATVANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLAGYDIVLGTQWMAKLGRM-- 441
Query: 517 NWDKKT--MSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKDNKGV 574
+WD T ++F + + QG Q+G V
Sbjct: 442 SWDVTTRALTFDLEGRTICWQGAPNQDGPAVR---------------------------A 474
Query: 575 TGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIE 634
+ L +L+ + VF P GLPP+R + HAI LK+G PV VRPYRYP K+E+E
Sbjct: 475 ASADDSLLGGLLDSFADVFTEPTGLPPQRGRDHAIVLKQGTSPVAVRPYRYPAAHKDELE 534
Query: 635 NQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELL 694
Q ++ G++R S S+FSSPV+LVKK D SWR CVDYRALN T+ D FPIP+++ELL
Sbjct: 535 RQCAAMISQGIVRRSDSAFSSPVLLVKKADSSWRFCVDYRALNALTVKDAFPIPVVDELL 594
Query: 695 DELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLM 754
DELHGAR+FSKLDL+SGYHQVR++ ED+HKTAFRTH+G YEFLVMPFGL NAP+TFQ+LM
Sbjct: 595 DELHGARFFSKLDLRSGYHQVRMRPEDIHKTAFRTHDGLYEFLVMPFGLCNAPATFQALM 654
Query: 755 NDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVE 814
ND+ R LR+ VLVFFDDIL+YS W HL HL+ VL +LRE L R KC FG + V
Sbjct: 655 NDVLRSFLRRFVLVFFDDILIYSDTWADHLRHLRAVLTVLREHKLFIKRSKCAFGVDSVA 714
Query: 815 YLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTEL 874
YLGH+IS GV +DP+KV+++ WP P++ + VRGFLGL GYYRKF+ +YG IA PLT L
Sbjct: 715 YLGHVISAAGVAMDPAKVQAIREWPQPRSARAVRGFLGLAGYYRKFVHNYGTIAAPLTAL 774
Query: 875 TKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPI 934
KK GF W+E A AF+ LK ++++P+LA+PDF+K FT+ECDAS G GA+L+Q+ P+
Sbjct: 775 LKKEGFAWTEAATAAFDALKAAVSSAPILAMPDFTKAFTVECDASSHGFGAVLIQDGHPL 834
Query: 935 AYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTM 994
A+FS+ + R+ + +AYE+EL+ L LA++HWRPYL GRHF V TD SLK LL Q++ T+
Sbjct: 835 AFFSRPVAPRHRALAAYERELIGLVLAVRHWRPYLWGRHFTVKTDHYSLKYLLDQRLSTI 894
Query: 995 EQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLE---LRQMGSHVDWLGGKDLKEE 1051
Q +W KLLGFDF + YKPG N ADALSR + T + L D++ + L++
Sbjct: 895 PQHHWVGKLLGFDFTVEYKPGAANTVADALSRRDTTEDASVLVLSAPRFDFI--ERLRQA 952
Query: 1052 VSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGG 1111
D L + + + ++ +G++L+ GRL LP SPL+ +L H + G
Sbjct: 953 QDVDPALVALQAEIRSGTRAG-PWSMADGMVLFAGRLYLPPASPLLQEVLRAVH---EEG 1008
Query: 1112 HSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWED 1171
H G RT RL + ++ MKS VQDFV+ C+VCQR K P GLL PLP+P+ +W D
Sbjct: 1009 HEGVQRTLHRLRRDFHFPNMKSVVQDFVRTCEVCQRYKAEHLQPAGLLLPLPVPQGVWTD 1068
Query: 1172 LSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSS 1231
+++DF+ LP+ +G IL VVDR SKY HFIPL HPY+A+SVA+VF EIVRLHGVP S
Sbjct: 1069 VALDFVEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQVFFAEIVRLHGVPQS 1128
Query: 1232 IVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKT 1291
+VSDRDP+F S FW EL +L GTKL M+TA+HP+SDGQSE NR + YLRC D+P+
Sbjct: 1129 MVSDRDPVFTSAFWSELMRLVGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQ 1188
Query: 1292 WVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEAL 1351
W+ W+PWAE+ +NT + S TPF VVYGR PP+I + G+TRV AV K + ER E L
Sbjct: 1189 WLRWLPWAEFVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKSMEERSEFL 1248
Query: 1352 RQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGP 1411
+R +L +AQ K++ D+ SF +G+WV ++LR S+ + KL +Y+GP
Sbjct: 1249 EDIRYRLEQAQAIQKKYYDKSHRAVSFQVGDWVLLRLRQRAPASLSLAVSGKLKPRYFGP 1308
Query: 1412 YPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEG-EELPDLEGDGGILIEPTE 1470
Y + + VA +L LP G+++H VFH+ LLKK G + LP++ G + EP
Sbjct: 1309 YRIAEMINEVAARLALPAGARLHDVFHIGLLKKWHGAPPDAPPPLPNVH-HGAVACEPER 1367
Query: 1471 VLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAYGEG 1526
V+ R + ++Q+L+QWKG ATWED + +++P+ LED+ G G
Sbjct: 1368 VIKARL----ARGVRQVLVQWKGTSAASATWEDREPFFARYPALQLEDELPLDGGG 1419
>ref|NP_917151.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1495
Score = 1050 bits (2714), Expect = 0.0
Identities = 597/1467 (40%), Positives = 838/1467 (56%), Gaps = 87/1467 (5%)
Query: 62 DNVTPAKEADHGSGSGK-GSMTRLTGDVLSEFRQSAKKVELPMFDGD-DPAGWISRAEVY 119
DN P +AD S + G T + L K+E P +DG DP W++R E
Sbjct: 77 DNTPPQDDADARSRRDQHGDDTAIDNSFLPR-----AKLEFPTYDGKGDPLPWLNRCET- 130
Query: 120 FRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYGGQGDGDVYE 179
FR Q TP + A L + G ++ + +W RF + R+G
Sbjct: 131 FRGQKTPETRKVWYASLHLIGDAQLWYYRIELNSGEPSWRRFVQLVHTRFGPPMTDSPLG 190
Query: 180 QLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSR 239
+LT LR+ GTVE Y+ +F L + L E Q + F GL ++ V S
Sbjct: 191 ELTALRRTGTVENYVNSFLALACRDVELSESQQVQLFTAGLVNPLKTDV---ALCRPRSL 247
Query: 240 MKILQIARAVE-RETMGDGGSGHAR----PTRSSLGGNRANRSGSNRSSDWVFVKGSKET 294
+ +ARA E R T+G R P S + A+ S S S+D
Sbjct: 248 DDAIMLARAYEQRATLGPTDPSAPRTGRVPRPSLPASSAASASASTTSADVAA------- 300
Query: 295 NSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAF 354
S A G P + PR R LS E+ +RR +GLC+ C +
Sbjct: 301 --------STAAGKQPLVS---------ALPRKR----LSPAEMAQRRSEGLCYNCDEKY 339
Query: 355 HPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQVGKDKP 414
H+C + +I E+ + + I +E S + L + + K
Sbjct: 340 VAGHRCKKSFVIEVISFPEDTGDEEDSTPEAHAITLDEPS------IFLHALAGISAPKF 393
Query: 415 QTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGK 474
TIK+ + +V L+DSG+THNF++ ++ H+ + P L + + +G + + G+
Sbjct: 394 NTIKVWARLGSQELVALLDSGSTHNFINDAIAHQASVPLQRRPGLSVAVANGDRVPSPGR 453
Query: 475 CKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTL 534
C + G+H +D LG D+VLG +WL TLG + ++ +++++F H VT
Sbjct: 454 CPPQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLGPTLWDFSRQSLAFGPAHDRVTW 513
Query: 535 QGHEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKDNKGVTGVQQAELDMILERHSVVFQ 594
+ +A A G G L LD++ + +F
Sbjct: 514 TSIDAAPAPALA-------AAIDGQPGDLMTDL--------------LDVLKD----LFT 548
Query: 595 APKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFS 654
P GLPP+R+ H I L+ G V VRPYRY H QK+E+E Q ++L GVIR S+S+FS
Sbjct: 549 EPHGLPPERHLCHRIRLEAGVSAVAVRPYRYAHIQKDELERQCDDMLRHGVIRPSSSAFS 608
Query: 655 SPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQ 714
SP +L+KK D SWR CVDYRALN TI DKFPIP+ EEL DEL GA++F+KLD++SGYHQ
Sbjct: 609 SPALLIKKCDGSWRFCVDYRALNDKTIKDKFPIPVAEELFDELRGAKFFTKLDMRSGYHQ 668
Query: 715 VRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDIL 774
V + +DVHKTAFRTH+G +EFLVMPFGL NAP+TFQ+LMND+ LR+ VLVFFDDIL
Sbjct: 669 VLMHPDDVHKTAFRTHQGLFEFLVMPFGLTNAPATFQALMNDVLLPFLRRFVLVFFDDIL 728
Query: 775 VYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVES 834
+YS W HL H++ VL L++ L R KC FG V YLGH+ISG GV +D SKV++
Sbjct: 729 IYSSSWSEHLRHVRTVLQTLQDHCLHLKRSKCEFGLTSVAYLGHVISGDGVAMDRSKVQA 788
Query: 835 VTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLK 894
V WP PK V+ VRGFLGL GYYR+FIRD+G IA PLT L +K GF WS++A AF L+
Sbjct: 789 VLDWPVPKTVRAVRGFLGLAGYYRRFIRDFGAIAAPLTALLRKEGFRWSDEAAAAFRKLQ 848
Query: 895 KKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKE 954
LT +PVL LPDF+++F +ECDASG G+GA+L Q P+A+FS + R+ +AYE+E
Sbjct: 849 HALTAAPVLQLPDFNRDFIVECDASGTGLGAVLHQGGGPVAFFSMPIAPRHAKLAAYERE 908
Query: 955 LMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKP 1014
L+ L A++HWRPYL GR F + TD SL+ LL Q++ T+ Q +WA+KLLGFDF + YKP
Sbjct: 909 LIGLVKAVRHWRPYLWGRRFIIRTDHYSLRFLLDQRLSTIPQHHWASKLLGFDFAVEYKP 968
Query: 1015 GKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLG 1074
G N ADALSR +E L + S + D++ EV+ L + + +
Sbjct: 969 GTANVVADALSRRDEHLAEAFVLSAPHFSLLDDVRREVASTPSLASLRDDI-IRGAKPPP 1027
Query: 1075 YTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSA 1134
+ +++G+++ + R+ +P SPL+ +L H GH G +T RL A+ + +
Sbjct: 1028 WAFKDGLIVLKDRVFIPESSPLLPAVLELAH---GHGHEGTQKTMFRLRADFHVPRDRVL 1084
Query: 1135 VQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVD 1194
VQDFV+ C CQR K P GLLQ LP+P +W D++MDF+ GLP+ G IL VVD
Sbjct: 1085 VQDFVRACLTCQRNKTEHLQPAGLLQSLPVPSAVWADIAMDFVEGLPRVHGKTVILTVVD 1144
Query: 1195 RLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGT 1254
R SK+AHFIPL HPYTA +VA F +IVRLHGVPSSIVSDRDP+F S FW ELF+L G
Sbjct: 1145 RFSKFAHFIPLSHPYTATTVAAAFFGDIVRLHGVPSSIVSDRDPVFTSKFWTELFRLAGV 1204
Query: 1255 KLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVT 1314
+L +++A+HP+SDGQSEV N+ + YLRC D+P+ W+ W+PWAEY YNT + AS T
Sbjct: 1205 QLNLTSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRQWLRWLPWAEYCYNTSYQASLRTT 1264
Query: 1315 PFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRS 1374
PF VVYGR PP++ + G T + AVQ+ + +RD+ L +R +L +AQ KQ D+K
Sbjct: 1265 PFHVVYGRSPPSLRSYEPGSTCLPAVQRSMQDRDQFLVAIRDRLEQAQQVYKQAYDKKHR 1324
Query: 1375 DRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVH 1434
+ +F +G+WV+++L S+ TR KL K+YGPY +VA +G+VAY+L+LPPG+++H
Sbjct: 1325 ELNFDVGDWVWLRLLHRPMASLDTRGRGKLGPKFYGPYQIVACIGSVAYRLRLPPGARLH 1384
Query: 1435 PVFHVSLLKKAVGTYHEGEELPDL--EGDGGILIEPTEVLATRTVQLQGQSIKQILIQWK 1492
VFHV LLK G LP L G + +EP V +R + ++Q+L+QWK
Sbjct: 1385 DVFHVGLLKPFRG--EPPSTLPPLPPTQHGQVCLEPQSVSRSRL----ARGVRQVLVQWK 1438
Query: 1493 GQQPEEATWEDVDMIKSQFPSFCLEDK 1519
+ +A+W +D ++ +P F LED+
Sbjct: 1439 NKPAADASWLSLDEFRALYPDFQLEDE 1465
>emb|CAE05990.1| OSJNBa0004L19.22 [Oryza sativa (japonica cultivar-group)]
Length = 1586
Score = 1026 bits (2653), Expect = 0.0
Identities = 561/1447 (38%), Positives = 832/1447 (56%), Gaps = 99/1447 (6%)
Query: 98 KVELPMFDGDDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLT 157
++E+P+F G+DP W+ + E ++ + TP E +LA ++G + ++ + + +T
Sbjct: 207 RLEIPLFSGEDPIDWLKQCEKFYEISGTPAEQWVNLAIAHLQGKAMKWYRGIGIPWQLIT 266
Query: 158 WERFKCALLERYGGQGDGDVYEQLTELRQRG-TVEEYITAFE----YLTAQIPRLPEKQF 212
W ++ + R+ + E ++Q TVE+YI FE + + P L E+
Sbjct: 267 WPQWCAMVSTRFSAADTHEAVELFQNVKQYNQTVEQYIDKFEEYVDLVRREHPYLQEQYL 326
Query: 213 LGYFLHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGN 272
F+ GL+G+I+ V GH
Sbjct: 327 NSCFIGGLRGDIKHDV------------------------------CGH----------- 345
Query: 273 RANRSGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTH 332
+ S W + N+ N N R QA P + R+ +RG
Sbjct: 346 ---KPQGLLESYWYTKNYERAANARKNLLNF----NRNRFQNQAGPIQGRNVV-NRG--- 394
Query: 333 LSYNELMERRQKGLCFKCGGAFHPMHQCPDKQ-LRVLIMEDEEEKEGG--GNLLAVEV-- 387
E +E++++ C+ C + P HQC K+ L L+ME EE K+ G G L +
Sbjct: 395 -QPREQVEKKEERKCWFCKEPWFPKHQCKVKKALNALLMEGEEGKDEGEEGELTGNQEDC 453
Query: 388 -IEEEES---SEGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVST 443
+E+EE+ E + M +S G +P T ++ I G V L+DSG+T F+
Sbjct: 454 KLEKEEAPPDDENQEELMFVSHNAVYGTTRPDTFSVIIQINGRRAVGLVDSGSTSTFMDQ 513
Query: 444 SLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVL 503
+ +V T + ++ + G + +++ + EL+ + L D++L
Sbjct: 514 DYAVRNHCPLVSTDAKKVVVAGGGELKSEVQVPELVYQIQGETFSNKFNIIPLKGYDVIL 573
Query: 504 GIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKE 563
G +W+ + ++ K+ + G K V +Q +R G ++ +
Sbjct: 574 GADWIYKYSPITLDLKKRELGITKGEKTVVIQD--------------FTRPGKHLWVDSK 619
Query: 564 KVQ--LEKDNKG----VTGVQQAE--------LDMILERHSVVFQAPKGLPPKRNKQHAI 609
KV L K G +T V++ E + IL+ V + PKGLPP+RN H I
Sbjct: 620 KVDQILRKGGLGCLFQITRVKEEETSHEIPEDIKEILQEFPAVLKDPKGLPPRRNCDHVI 679
Query: 610 TLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRM 669
TLK G P N+RPYR PH+QK +E + EL+E I+ S +SSP ++V+KKD SWR+
Sbjct: 680 TLKSGAEPPNLRPYRVPHYQKEAMEKIIAELIESKEIQVSDIPYSSPAVMVRKKDGSWRL 739
Query: 670 CVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRT 729
CVDYR LN T+ +KFP+PIIE+LLDEL+GA+ FSKLDL+SGYHQ+R+ +D+ KTAFRT
Sbjct: 740 CVDYRQLNAQTVKNKFPMPIIEDLLDELNGAKVFSKLDLRSGYHQIRMATQDIPKTAFRT 799
Query: 730 HEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQE 789
H GHYE+ VMPFGL NAP+TFQSLMN + LRK VLVFFDDIL+YSKDW H EH+++
Sbjct: 800 HLGHYEYQVMPFGLTNAPTTFQSLMNQVLAPFLRKYVLVFFDDILIYSKDWAEHKEHIRQ 859
Query: 790 VLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRG 849
V+ +L E LV KKC FG V YLGH+IS GV DP KVE + ++PTPK+V +R
Sbjct: 860 VMKVLEENKLVVKLKKCAFGLPSVTYLGHIISQDGVATDPKKVEKIATYPTPKSVTDLRK 919
Query: 850 FLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFS 909
FLG+TGYYR+FI++YG + +PL ++ KK GF+W + EAFETLK + TSPVL+LPDF+
Sbjct: 920 FLGMTGYYRRFIKNYGIVCRPLHDMLKKEGFQWEREQTEAFETLKTHMCTSPVLSLPDFT 979
Query: 910 KEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYL 969
KEF IE DA G G+GA+LMQ RP+AYFSK LG + ++S YEKE MA+ A++ WR Y+
Sbjct: 980 KEFVIEADACGNGIGAVLMQSGRPLAYFSKTLGPKAAAQSIYEKEAMAILEALKKWRHYV 1039
Query: 970 LGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNE 1029
LG + TDQ+SLK ++ Q++V Q KL+ +D+ I YK GK N ADALSR+
Sbjct: 1040 LGSRLIIKTDQQSLKFMMNQRLVEGIQHKLLLKLMEYDYSIEYKAGKENLVADALSRIPP 1099
Query: 1030 TLELRQMGSHV-DWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRL 1088
+ + + + + +W+ +D++ D + +I+ + + D+ Y+ E G+L Y+GR+
Sbjct: 1100 AEQCQAITTVIPEWV--RDIQRSYEGDVQAHKILSLIGTEGDTDGSYSQEAGLLRYKGRI 1157
Query: 1089 VLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQ 1148
+ + + ++ +H++ GGHSG TY R+ + YW G+K AV+ F+++C +CQ
Sbjct: 1158 YVGENTEIREELIRSYHSSAFGGHSGMRATYHRIKSLFYWPGLKKAVEGFIRECPICQVT 1217
Query: 1149 KYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHP 1208
K GLL PL +P+ W ++MDF+ GLPKS G + ILVVVDRL+KYAHFI + HP
Sbjct: 1218 KAEHIHIPGLLDPLEVPDMAWAHITMDFVEGLPKSNGKDVILVVVDRLTKYAHFIAMAHP 1277
Query: 1209 YTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDG 1268
YT + V E+F I RLHG+P +I++DRD IF S ++E+FK +LK ST+YHP++DG
Sbjct: 1278 YTVEQVVELFMNNIHRLHGMPMAIITDRDRIFTSQLFQEIFKSMKVRLKFSTSYHPQTDG 1337
Query: 1269 QSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTIT 1328
Q+E VN+CLE+YLR +P W W+ AE+WYNT +H S +TPF+ +YG PPP I
Sbjct: 1338 QTERVNQCLESYLRSMTFQEPTRWHSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQIN 1397
Query: 1329 RWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKL 1388
+ E + + ++D +++L+ L AQ R+K +ADR RS+R+ ++G+ V++KL
Sbjct: 1398 EFSVPCNVSEEARVTIEQKDAIIQKLKYSLTEAQRRIKHYADRNRSERTLAVGDMVYLKL 1457
Query: 1389 RAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGT 1448
+ +RQ + R KL +K+YGP+ ++ +VG VAY+L+LP GS +HPVFHVS LKK +G+
Sbjct: 1458 QPYRQTAFGIRGSLKLRSKFYGPFKIMEKVGRVAYKLQLPEGSNIHPVFHVSQLKKHIGS 1517
Query: 1449 YH-EGEELPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMI 1507
LP + DG I EP VL R + G ++ Q L+ W P EATWED MI
Sbjct: 1518 RAVPMANLPSVGPDGQIKTEPVAVLKRRMIPRGGVAVTQWLVLWHNLSPSEATWEDASMI 1577
Query: 1508 KSQFPSF 1514
+S FPSF
Sbjct: 1578 QSMFPSF 1584
>ref|NP_908986.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1382
Score = 1020 bits (2637), Expect = 0.0
Identities = 572/1434 (39%), Positives = 798/1434 (54%), Gaps = 90/1434 (6%)
Query: 99 VELPMFDGD-DPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLT 157
++ P +DG DP +++R E YF Q E + +A +E ++ L +E
Sbjct: 1 MDFPRYDGTTDPLIFVNRCESYFHQQRIMEEEKVWMASYNLEDVAQLWYIQLQEDEGTPR 60
Query: 158 WERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFL 217
W RFK L R+G +L E R+ GTV+EY +F+ L + L E Q + F
Sbjct: 61 WNRFKDLLHLRFGPPLRSAPLFELAECRRTGTVKEYQNSFQALLPRAGPLQEAQLVQLFT 120
Query: 218 HGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRS 277
GL + VR + + M + AR VE + ARP L R
Sbjct: 121 GGLLPPLSHAVRIHNPQSLAAAMSL---ARQVELMELDKPAPVPARPAPRGLLPALPQRL 177
Query: 278 GSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNE 337
+ P +A+P K LS E
Sbjct: 178 ALPAPP-----------------------ASAPVAKMEAKPVKR-----------LSQEE 203
Query: 338 LMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGE 397
ERR+ GLC+ C + H ++ R + D G L E + +GE
Sbjct: 204 QAERRRLGLCYNCDEKYSRGH---NRVCRRIFYID------GVTLTDAEDAALDADQDGE 254
Query: 398 LSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTP 457
SL V G T+++ ++ + + L+D+ +THNF++ + + P
Sbjct: 255 APVFSLQAV--AGVPICDTMQVRVMLGAVTLTALLDTSSTHNFIAEEAARRTNLAIQPKP 312
Query: 458 SLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVN 517
L T+ +G + + G ++ I VD + L D+VLG +W+ TLG + +
Sbjct: 313 RLTATVANGEKIQCPGVLRQAPITIDGEEFHVDLFVMPLAGYDLVLGTQWMVTLGPITWD 372
Query: 518 WDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKDNKGVTGV 577
+ +TMSF + G+ V + +R + V
Sbjct: 373 FTARTMSF-------------SRHGMEVRWSDVAAR--------------PEPTVAVIAA 405
Query: 578 QQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQV 637
+ LD +L VF P GLPP+R + H+I LK G PV VRPYRY K+E+E Q
Sbjct: 406 SEVLLDGLLASFEGVFAEPSGLPPQRARDHSIVLKPGALPVAVRPYRYLAAHKDELELQC 465
Query: 638 KELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDEL 697
++E G++R S S+FSSPV+LVKK D SWR CVDYRALN T+ D FPIP+I+ELLDEL
Sbjct: 466 AAIIEQGIVRRSDSAFSSPVLLVKKPDGSWRFCVDYRALNALTVKDAFPIPVIDELLDEL 525
Query: 698 HGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDI 757
HGAR+F+KLDL+SGYHQVR++ DVHKTAF TH+G YEFLVMPFGL NAP TFQ+LMND+
Sbjct: 526 HGARFFTKLDLRSGYHQVRMRPADVHKTAFHTHDGLYEFLVMPFGLCNAPVTFQALMNDV 585
Query: 758 FRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLG 817
R LR+ VLVFFDDIL+YSK W HL H++ VL L+ L R KC F V YLG
Sbjct: 586 LRPFLRRFVLVFFDDILIYSKTWADHLRHIRAVLSELQRHQLFLKRAKCAFASASVAYLG 645
Query: 818 HMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKK 877
H+IS GV +DP+KV++V WP P++ + VR FLGL GYYRKF+ +YG IA PLT L KK
Sbjct: 646 HVISEAGVAMDPAKVQAVRDWPAPRSARAVRSFLGLAGYYRKFVHNYGAIAAPLTALLKK 705
Query: 878 NGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYF 937
+ F WS +A AF+ LK +TT+PVLA+PDFSK F +ECDAS G GA+L+Q+ P+A+F
Sbjct: 706 DSFSWSGEAATAFDALKAAVTTAPVLAMPDFSKPFIVECDASSHGFGAVLVQDSHPVAFF 765
Query: 938 SKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQ 997
S+ + R+ + +AYE+EL+ A++HWRPYL GR F V TD SLK LL Q++ T+ Q
Sbjct: 766 SRPVAPRHRALAAYERELIGFVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATIPQH 825
Query: 998 NWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEEVSKDEE 1057
+W KLLGFDF + YKPG N ADALSR + + + D + + +
Sbjct: 826 HWVGKLLGFDFTVEYKPGHANAVADALSRRDTPEDGTILALSAPRF---DFVDRLRHAQT 882
Query: 1058 LQRIIKSVHEKKDS---SLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSG 1114
+ ++HE+ S +L + +G++ Y GRL +P SPL+ ++ H + GH G
Sbjct: 883 TDPALVAMHEELTSGSQALPWAAVDGMIQYSGRLYIPPASPLLPELMAAVH---EEGHEG 939
Query: 1115 FYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSM 1174
RT RL + ++ MK VQD V+ C CQR K P GLL PLP+P+ +W D+++
Sbjct: 940 VQRTLHRLRRDFHFPNMKQLVQDLVRACPTCQRYKSEHLHPAGLLLPLPVPQGVWTDIAL 999
Query: 1175 DFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVS 1234
DF+ LP+ +G IL VVDR SKY HFIPL HPY+A++VA+ F +IVRLHG+P SIVS
Sbjct: 1000 DFVEALPRVRGKSVILTVVDRFSKYCHFIPLSHPYSAETVAQAFFADIVRLHGMPQSIVS 1059
Query: 1235 DRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVI 1294
DRD +F S+FWREL L GTKL M+TA+HP+SDGQSE NR + YLRC D+P+ W+
Sbjct: 1060 DRDTVFTSHFWRELMWLVGTKLHMTTAFHPQSDGQSESANRVIVMYLRCLTGDRPRQWLQ 1119
Query: 1295 WIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQL 1354
W+PWAEY +NT + S TPF VVYGR PP+I + G+TRV AV K + ERD+ L +
Sbjct: 1120 WLPWAEYVFNTAYQTSLRDTPFRVVYGRDPPSIRSYEPGDTRVAAVAKTMEERDKFLADI 1179
Query: 1355 RLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPV 1414
R +L +AQ K+ D+ ++ +G+W ++LR S+ + KL ++YGPY +
Sbjct: 1180 RSRLEQAQATQKRHYDKAHRHVTYQVGDWALLRLRQRAASSLPQTVAGKLRPRFYGPYRI 1239
Query: 1415 VARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIEPTEVLAT 1474
+ VA +L LPP +++H VFH+ LLKK G+ + G ++ EP + T
Sbjct: 1240 TELINDVAVRLALPPRARLHDVFHIGLLKKFHGSPPDAPPPLPAVHHGAVVPEPERAVKT 1299
Query: 1475 RTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAYGEGID 1528
R + ++Q+LIQWKG+ P ATWED D +++P F L D+ A EG D
Sbjct: 1300 RL----ARGVRQLLIQWKGESPASATWEDADAFIAKYPDFQLGDEL-ALDEGGD 1348
>emb|CAE01900.2| OSJNBa0059D20.8 [Oryza sativa (japonica cultivar-group)]
gi|50930431|ref|XP_474743.1| OSJNBa0059D20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1463
Score = 1014 bits (2621), Expect = 0.0
Identities = 577/1428 (40%), Positives = 802/1428 (55%), Gaps = 85/1428 (5%)
Query: 97 KKVELPMFDGD-DPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEEN 155
KK + P +DG DP ++++ E YFR T E R +A ++ T ++ LL +E
Sbjct: 58 KKWDFPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGT 117
Query: 156 LTWERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGY 215
TW RFK + R+G +L+E R+ GTVEEY F+ L + RL E Q +
Sbjct: 118 PTWGRFKELVNLRFGPPLRSAPLFELSECRRTGTVEEYSNRFQALLPRAGRLDESQRVQL 177
Query: 216 FLHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRAN 275
F GL + VR + M + + +ER+ RP L RA
Sbjct: 178 FTGGLLPPLSHAVRIHHPETLAAAMSLARQVELMERD----------RPAPPPL---RAP 224
Query: 276 RSGSNRS-SDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLS 334
G + + + + + + + G N R+ PE
Sbjct: 225 PRGLLPAPAPRLALPAPAQQLALPAPPAAAPQGRDAANPRRLTPE--------------- 269
Query: 335 YNELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESS 394
E+ ER ++GLCF C F H ++ R L D E + +A+E +
Sbjct: 270 --EMAERCRQGLCFNCNEKFTRGH---NRFCRRLFFVDGVEIDD----VAIEGDAAAAAG 320
Query: 395 EGELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVV 454
+ E SL V G TI+L + ++ L+D G+TH+F+ + G +
Sbjct: 321 DTEAPVFSLHAV--AGVPIADTIQLQVTVGDASLLALLDGGSTHSFIGEEAARRAGLPIQ 378
Query: 455 DTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDM 514
+P + + +G + G ++ D + L D+VLG WL TLG +
Sbjct: 379 SSPRMTAIVANGERVACPGVIRDAAFTINGSTFHTDLFVMPLAGFDVVLGTRWLGTLGPI 438
Query: 515 IVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKDNKGV 574
+ ++ ++M+F +++G R + G L + +
Sbjct: 439 VWDFTSRSMAF-------------QRDG---------QRFAWKGVASTSTTHL----RTL 472
Query: 575 TGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIE 634
LD +L + VF P GLPP R + HAI LK PV VRPYRYP K+E+E
Sbjct: 473 AAASGTLLDELLVAYEDVFGEPTGLPPPRGRDHAIVLKPSSAPVAVRPYRYPAAHKDELE 532
Query: 635 NQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELL 694
Q ++E GV+R S S FSSPV+LVKK D SWR CVDYRALN T+ D FPIP++
Sbjct: 533 RQCAAMIEQGVVRRSDSPFSSPVLLVKKADGSWRFCVDYRALNALTVKDAFPIPVV---- 588
Query: 695 DELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLM 754
DELHGAR+F+KLDL+SGYHQVR++ EDVHKTAFRTH+G YEFLVMPFGL NAP+TFQ+LM
Sbjct: 589 DELHGARFFTKLDLRSGYHQVRMRPEDVHKTAFRTHDGLYEFLVMPFGLCNAPATFQALM 648
Query: 755 NDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVE 814
ND+ R LR+ VLVFFDDIL+YS+ W HL HL+ VL +LR+ L R KC FG V
Sbjct: 649 NDVLRPFLRRFVLVFFDDILIYSETWTDHLRHLRTVLSVLRQHRLFVKRSKCTFGSPSVS 708
Query: 815 YLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTEL 874
YLGH+IS GV +DP+KV+++ W P++ + VR FLGL GYYRKF+ +YG IA PLT L
Sbjct: 709 YLGHVISEAGVAMDPAKVQAIHEWLVPRSARAVRSFLGLAGYYRKFVHNYGTIAAPLTAL 768
Query: 875 TKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPI 934
TKK+GF W+E AF+ LK +T++PVLA+PDF+K FT+E DAS G GA+L+Q+ P+
Sbjct: 769 TKKDGFSWTEDTAAAFDALKAAVTSAPVLAMPDFAKPFTVEGDASTHGFGAVLVQDGHPV 828
Query: 935 AYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTM 994
A+FS+ + +R+ + +AYE+EL+ L A++HWRPYL GR F V TD SLK LL Q++ T+
Sbjct: 829 AFFSRPVVLRHRALAAYERELIGLVHAVRHWRPYLWGRRFVVKTDHYSLKYLLDQRLATI 888
Query: 995 EQQNWAAKLLGFDFEISYKPGKLNKGADALSR--VNETLELRQMGSHVDWLGGKDLKEEV 1052
Q +W KLLGFDF + YKPG N ADALSR E L D++ L +
Sbjct: 889 PQHHWVGKLLGFDFAVEYKPGAANTVADALSRRDTEEGAILALSAPRFDFI--SKLHDAQ 946
Query: 1053 SKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGH 1112
+D L + V + + + +L Y L +P SPL ++ H + GH
Sbjct: 947 RQDPALTALRDEVSAGTRTG-PWALVDDLLQYNSWLYIPPASPLAREIIEATH---EDGH 1002
Query: 1113 SGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDL 1172
G RT RL + MK VQD+V+ C VCQR K SP GLL PLP+P+ +W D+
Sbjct: 1003 EGVKRTMHRLRREFHIPNMKQLVQDWVRSCAVCQRYKSEHLSPAGLLLPLPVPQGVWTDI 1062
Query: 1173 SMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSI 1232
++DFI LP+ +G IL VVDR SKY HFIPL HPY+A+SVA+ F EIV LHGVP S+
Sbjct: 1063 ALDFIEALPRVRGKSVILTVVDRFSKYCHFIPLAHPYSAESVAQAFFAEIVHLHGVPQSM 1122
Query: 1233 VSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTW 1292
VSDRDPIF S FWREL +L GTKL M+TA+HP+SDGQSE NR + YLRC D+P+ W
Sbjct: 1123 VSDRDPIFTSTFWRELMRLMGTKLHMTTAFHPQSDGQSEAANRVIIMYLRCLTGDRPRQW 1182
Query: 1293 VIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALR 1352
+ W+PWAE+ +NT + +S TPF VVYGR PP+I + G+TRV AV K + ER E L
Sbjct: 1183 LRWLPWAEFIFNTAYQSSLRDTPFRVVYGRDPPSIRSYEAGDTRVAAVAKSMEERAEFLF 1242
Query: 1353 QLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPY 1412
+R +L +AQ K D+ ++ +G+W ++LR S+ KL ++YGPY
Sbjct: 1243 DIRYRLEQAQAVQKLHYDKHHRHVAYQVGDWALLRLRQRPTTSLPQSGTGKLKPRFYGPY 1302
Query: 1413 PVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEG-EELPDLEGDGGILIEPTEV 1471
+ + VA +L+LP G+++H VFH+ LLKK G LP L G I EP
Sbjct: 1303 RITELINDVAVRLELPAGARLHDVFHIGLLKKFHGPPPGAPPALPPLH-HGAIAPEPERA 1361
Query: 1472 LATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDK 1519
+ R + ++Q L+QWKG+ P ATWED++++++++P+ LED+
Sbjct: 1362 VRFRL----ARGVRQALVQWKGESPASATWEDIEVLRAKYPALQLEDE 1405
>gb|AAV24812.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1475
Score = 1003 bits (2593), Expect = 0.0
Identities = 564/1451 (38%), Positives = 814/1451 (55%), Gaps = 84/1451 (5%)
Query: 86 GDVLSEFRQSAKKVELPMFDGDDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHF 145
G+ +E ++E+P+F G+DP W+ + E +F + TP + +LA + G + +
Sbjct: 85 GNQYAEAVLKGPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKW 144
Query: 146 FNSLLSEEENLTWERFKCALLERYGGQGDGDVYEQLTELRQRGT-VEEYITAFEYLTAQI 204
F + + + W ++ + R+ + + E ++Q GT VE+YI FE +
Sbjct: 145 FGGIGLPWQVIAWPQWCSMVCTRFSAASEHEAIELFQNVKQFGTTVEQYIDKFEDYVDLV 204
Query: 205 ----PRLPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSG 260
P L E+ F+ GL+ +I+ V L
Sbjct: 205 KRDHPYLQEQYLTSCFIGGLRADIKYDVCGQKPQGLLETY-------------------- 244
Query: 261 HARPTRSSLGGNRANRSGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEK 320
A R +G NR N + GGN RN
Sbjct: 245 WAANARKMVGNFNRNR------------------------NQNPLGGNQGRN------AN 274
Query: 321 NRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQ-LRVLIMEDE--EEKE 377
+R R G +RR++ C+ C + P HQC KQ + L+ ED+ E+KE
Sbjct: 275 HRGQNRGEG----------DRREEKKCWFCKEPWFPRHQCKIKQAIHALLEEDDGQEDKE 324
Query: 378 G---GGNLLAVEVIEEEESSEGELSS---MSLSQVEQVGKDKPQTIKLLGLIQGLPIVIL 431
GG+ + EE +SE E + M +SQ G +P T +L I G V L
Sbjct: 325 TSNTGGDEEEKKETEESATSENESPTEELMYISQTAVQGTSRPDTFSVLIKINGRTAVGL 384
Query: 432 IDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDA 491
+DSG+T F+ + + +T + ++ + G + +T ++
Sbjct: 385 VDSGSTTTFMDQDYALRNYYPLKNTDTKKVVVAGGGELKTDVMVPDISYEIQGECFTNQF 444
Query: 492 QLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMI 551
+L L D++LG +W+ + ++ ++ + G+K + LQ + +
Sbjct: 445 KLLPLKGYDIILGADWIYNYSPISLDLKQRILGITKGNKVILLQDFTKPNKHFQISGKRL 504
Query: 552 SRAGFSGYLGKE-KVQLEKDNKGVTG-VQQAELDMILERHSVVFQAPKGLPPKRNKQHAI 609
+ G LG +V + + G V ++ I+++ V + PKGLPPKR H I
Sbjct: 505 EKMLKKGALGMVIQVNVMSETVEEEGHVIPEDISDIIQQFPAVLKEPKGLPPKRECDHVI 564
Query: 610 TLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRM 669
L+ G P N+RPYR PH+QK +EN + EL+E I+ S S +SSP ++V+KKD SWRM
Sbjct: 565 NLQSGAVPPNIRPYRVPHYQKEAMENIINELIESKEIQTSDSPYSSPAVMVRKKDGSWRM 624
Query: 670 CVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRT 729
CVDYR LN T+ +KFP+PIIE+LLDEL+GAR FSKLDL+SGYHQ+R+ E+DVHKTAFRT
Sbjct: 625 CVDYRQLNAQTVKNKFPMPIIEDLLDELNGARIFSKLDLRSGYHQIRMAEKDVHKTAFRT 684
Query: 730 HEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQE 789
H GHYE+ VMPFGL N P+TFQSLMN + LR+ VLVFFDDIL+YSK HLEH++
Sbjct: 685 HLGHYEYQVMPFGLTNDPATFQSLMNHVLAPFLRRFVLVFFDDILIYSKTRAEHLEHVKL 744
Query: 790 VLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRG 849
V+ L++ LV KKC FG V YLGH+IS GV DP KV + +WPTPK+V VR
Sbjct: 745 VMQALQDNHLVIKLKKCAFGLASVSYLGHVISQDGVATDPKKVGKIKNWPTPKDVTDVRK 804
Query: 850 FLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFS 909
FLG+TGYYR+FI+ YG I +P+ ++ KKNGF+W AFETLK KL TSPVLALPDF
Sbjct: 805 FLGMTGYYRRFIQGYGTICRPIHDMLKKNGFQWGADQTTAFETLKHKLRTSPVLALPDFD 864
Query: 910 KEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYL 969
+ FTIE DA GVG+GA+LMQ RPIA+FSKALG + +S YEKE MA+ A++ WR Y+
Sbjct: 865 QAFTIEADACGVGIGAVLMQGGRPIAFFSKALGPKAAGQSIYEKEAMAILEALKKWRHYV 924
Query: 970 LGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNE 1029
LG + TDQ+SLK ++ Q++V Q KL+ +D+ I YK GK N ADALSR+ +
Sbjct: 925 LGSKLIIKTDQQSLKFMMGQRLVEGIQHKLLLKLMEYDYTIEYKSGKENLVADALSRLPQ 984
Query: 1030 TLELRQMGSHV-----DWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLY 1084
+ + +W+ D++ D + +I+ + D Y E G+L Y
Sbjct: 985 KEAVADRCHPMTVVIPEWI--VDIQRSYENDVQAHKILSLIGTAADPDREYKLEAGLLKY 1042
Query: 1085 EGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDV 1144
+GR+ + + + ++T +H++ GGHSG T+ R+ YW GM+ V+ F+++C
Sbjct: 1043 KGRIYVGEATDIRRQLITTYHSSSFGGHSGMRATHHRIKMLFYWHGMRGEVERFIRECPT 1102
Query: 1145 CQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIP 1204
CQ K GLL PL IP+ W ++MDFI GLPKS+G + ILVVVDRL+KYAHFI
Sbjct: 1103 CQITKSEHVHIPGLLNPLEIPDMAWTHITMDFIEGLPKSQGKDVILVVVDRLTKYAHFIA 1162
Query: 1205 LKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHP 1264
L HPY + V E F I +LHG+P I++DRD IF S+ ++E+FK KL+ STAYHP
Sbjct: 1163 LAHPYDVEQVVEAFMNNIHKLHGMPMVIITDRDRIFTSSLFQEIFKAMKVKLRFSTAYHP 1222
Query: 1265 ESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPP 1324
+ DGQ+E VN+CLE+YLR +P W W+ AE+WYNT FH + +TPF+ +YG P
Sbjct: 1223 QMDGQTERVNQCLESYLRNMTFQEPHKWYSWLALAEWWYNTTFHTAIQMTPFKAMYGYSP 1282
Query: 1325 PTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWV 1384
P I + E + + E++ L +L+ LA AQ RMK FAD+ R++R+ +G+ V
Sbjct: 1283 PQINEFSVPCNISEEARVTIEEKEAILNKLKNSLADAQHRMKYFADKNRTERNLEVGDMV 1342
Query: 1385 FVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKK 1444
++KL+ +RQ + R KL +K+YGP+ V+ ++G +AY+L+LP +++HPVFHVS LKK
Sbjct: 1343 YLKLKPYRQSAFGIRGSLKLRSKFYGPFKVLQKIGQLAYKLQLPDDAQIHPVFHVSQLKK 1402
Query: 1445 AVGTYH-EGEELPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWED 1503
+G + LP + DG I EP VL R V +G ++ Q LI W+ P EATWED
Sbjct: 1403 HLGKHAIPMSNLPSVGPDGQIKTEPLAVLQRRMVPRKGVAVTQWLILWQNLSPAEATWED 1462
Query: 1504 VDMIKSQFPSF 1514
+I++ FPSF
Sbjct: 1463 ASVIQAMFPSF 1473
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 991 bits (2562), Expect = 0.0
Identities = 574/1503 (38%), Positives = 855/1503 (56%), Gaps = 72/1503 (4%)
Query: 63 NVTPAK-EADHGSGSGKGSMTRLTGDVLSE-FRQSAKKVELPMFDGDDPAGWISRAEVYF 120
NV+P + GSG G M G+V + K++ P FDG DP W + E YF
Sbjct: 144 NVSPVPLHSCENFGSGFGEMD---GEVEERHYSHRVPKLDFPKFDGTDPQDWRMKCEHYF 200
Query: 121 RVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYGGQGDGDVYEQ 180
V +T P + +A + G + S + WE F AL +++ + Q
Sbjct: 201 DVNNTYPGLWVRVAIIYFSGRAASWLRSTKAHVRFPNWEDFCAALSDKFDRDQHELLIRQ 260
Query: 181 LTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSRM 240
+ +RQ GTV EY F+ L ++ + Y H + ++R++V L R
Sbjct: 261 MDGIRQSGTVWEYYEQFDELMNKLLVYDPVVNMHYLTHRFTEGLYRKIRNVVL---LQRP 317
Query: 241 KILQIARAV---ERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDWVFVKGSKETNSG 297
+ L+ A AV + E + + + S GN RS +N ++G+ +
Sbjct: 318 RDLESALAVALLQEEVLETADEVTGKEVKKS-EGNSLGRSVAN-------LRGAYPLPTP 369
Query: 298 SGYNNSRAGG--NGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAFH 355
R+GG G +++ + + E RS+ + + L +RR +GLC+ C +
Sbjct: 370 P----MRSGGINMGIKSEEKKESEVRRSSGTNERLSSLK----AQRRAQGLCYICAEKWS 421
Query: 356 PMHQCPD-------KQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQ 408
P H+C + ++L ++ E E+ G V+E+ L ++SL V+
Sbjct: 422 PTHKCSNTVQLHAVQELFTVLHESVED----GLSTTDHVVEQT------LMAVSLQAVQ- 470
Query: 409 VGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQ 468
G + +++LG IQG I+IL+DSG++ +F+S + L + +++ + G++
Sbjct: 471 -GTETGGCMRMLGQIQGKEILILVDSGSSASFISKRVASSLMGVLEQPVHVQVMVAGGAK 529
Query: 469 ARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSG 528
+ H + ++ EL N DM+LG++WL M V+W K++
Sbjct: 530 LHCCSEILNCEWTIQGHVFFTNLKVLELNNYDMILGMDWLMQHSPMTVDWTTKSLIIAYA 589
Query: 529 HKWVTLQG---HEEQEGLLVA--LQTMISRAGFSGYLGKEKVQLEKDNKGVTGVQQAELD 583
+ L G EQ + + L+ + R S + V + + + V Q
Sbjct: 590 GTQIQLYGVRSDTEQCAHISSKQLRELNDRTAVSNLVQFCSVFALEYQEQIPEVVQT--- 646
Query: 584 MILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEG 643
+L S VF PKGLPP R H I L G GPVNVRPYRY QKNEIE+QV+E+L
Sbjct: 647 -VLTEFSSVFDEPKGLPPIRQFDHTIPLLPGAGPVNVRPYRYTPIQKNEIESQVQEMLSK 705
Query: 644 GVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYF 703
G+I+ S+S FSSPV+LVKKKD SWR CVDYR LN T+ +K+P+P+I+ELLDEL GA++F
Sbjct: 706 GIIQPSSSPFSSPVLLVKKKDGSWRFCVDYRHLNAITVKNKYPLPVIDELLDELAGAQWF 765
Query: 704 SKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLR 763
SKLDL+SGYHQ+R+ +D HKTAF+TH GH+EF V+PFGL +AP+TFQ +MN + LLR
Sbjct: 766 SKLDLRSGYHQIRMHPDDEHKTAFQTHHGHFEFRVLPFGLTSAPATFQGVMNSVLATLLR 825
Query: 764 KRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQ 823
+ VLVF DDIL+YSK H++HL+ V IL + L R KC F ++++ YLGH+I
Sbjct: 826 RCVLVFVDDILIYSKSLEEHVQHLKTVFQILLKHQLKVKRTKCSFAQQELAYLGHIIQPN 885
Query: 824 GVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNG-FEW 882
GV DP K++ + WP P +VK +R FLGL+GYYRKF+R+YG ++KPLT L +K + W
Sbjct: 886 GVSTDPEKIQVIQHWPAPTSVKELRSFLGLSGYYRKFVRNYGILSKPLTNLLRKGQLYIW 945
Query: 883 SEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALG 942
+ + ++AF+ LK+ L T+ VLA+PDF F +E DAS G+GA+LMQ P+A+ S+ALG
Sbjct: 946 TAETEDAFQALKQALITALVLAMPDFQTPFVVETDASDKGIGAVLMQNNHPLAFLSRALG 1005
Query: 943 VRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAK 1002
+R+ S YEKE +A+ LA+ HWRPYL F + TD RSL L +Q++ T Q K
Sbjct: 1006 LRHPGLSTYEKESLAIMLAVDHWRPYLQHDEFFIRTDHRSLAFLTEQRLTTPWQHKALTK 1065
Query: 1003 LLGFDFEISYKPGKLNKGADALSRV--NETLELRQMGSHV-DWLGGKDLKEEVSKDEELQ 1059
LLG ++I +K G N ADALSR ++ +EL + V +W+ D+ S D +
Sbjct: 1066 LLGLRYKIIFKKGIDNSAADALSRYPGSDRVELSALSVAVPEWIN--DIVAGYSSDPDAC 1123
Query: 1060 RIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTY 1119
++++ + ++ NG+L ++ RL + + +L HT GGHSG TY
Sbjct: 1124 SKVQTLCINSGAVPNFSLRNGVLYFQNRLWVGHNVDVQQRILANLHTAAVGGHSGIQVTY 1183
Query: 1120 RRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITG 1179
+R+ W +++ V +V+ C VCQ+ K G+LQPLP+P+ W+ +S+DF+ G
Sbjct: 1184 QRVKQLFAWPRLRATVVQYVQACSVCQQAKSEHVKYPGMLQPLPVPDHAWQIVSLDFVEG 1243
Query: 1180 LPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPI 1239
LPKS F ILVVVD+ SKY+HF+PL HP++A VAE + + I RLHG+P S++SDRD I
Sbjct: 1244 LPKSASFNCILVVVDKFSKYSHFVPLTHPFSALDVAEAYMQHIHRLHGLPQSLISDRDRI 1303
Query: 1240 FVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWA 1299
F S W LF+L GT+L+MS++YHP++DGQ+E VN+CLET+LRCF+ P W W+ A
Sbjct: 1304 FTSTLWTTLFRLAGTQLRMSSSYHPQTDGQTERVNQCLETFLRCFVHACPSQWSRWLALA 1363
Query: 1300 EYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLA 1359
EYWYNT FH++ G TPFEV+YG P R + + + L ER++ +R L
Sbjct: 1364 EYWYNTSFHSALGTTPFEVLYGHKPRYFGLSASAACRSDDLVEWLHEREKMQALIRDHLL 1423
Query: 1360 RAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVG 1419
RAQ RMKQ AD+ RS+RSF++G+WV++KL+ Q+SVVTR KL+ ++YGP+ V+ +VG
Sbjct: 1424 RAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTRANRKLSFRFYGPFQVLDKVG 1483
Query: 1420 AVAYQLKLPPGSKVHPVFHVSLLKKAVG-TYHEGEELPDLEGDGGILIEPTEVLATRTVQ 1478
VAY+L LP S +HPV HVS LKKA+ T LP L+ + P ++L R ++
Sbjct: 1484 TVAYRLDLPSSSLIHPVVHVSQLKKALAPTEQVHSPLPVLDPTNATHVCPAQILDRRFIR 1543
Query: 1479 LQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAYGEGIDRTQGPQQASD 1538
+ ++QI ++W G P TWE+ ++ +FP+ A A+G+ TQG
Sbjct: 1544 KGSKLVEQIQVRWTGDAPAATTWENPQELRRRFPT------APAWGQA--GTQGGGNVMP 1595
Query: 1539 APL 1541
AP+
Sbjct: 1596 API 1598
>gb|AAP53789.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534400|ref|NP_921502.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1611
Score = 990 bits (2559), Expect = 0.0
Identities = 560/1461 (38%), Positives = 817/1461 (55%), Gaps = 102/1461 (6%)
Query: 86 GDVLSEFRQSAKKVELPMFDGDDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHF 145
G+ +E ++E+ +F G+DP W+ + E +F + TP + +LA + G +
Sbjct: 219 GNQYAEAVIKGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKW 278
Query: 146 FNSLLSEEENLTWERFKCALLERYGGQGDGDVYEQLTELRQRG-TVEEYITAFEYLTAQI 204
F + + +TW ++ + R+ + E ++Q G TVE+YI FE +
Sbjct: 279 FRGVGLPWQVITWPQWCAMVCTRFSTANTHEAVELFQNVKQYGMTVEQYIDKFEEYMDLV 338
Query: 205 ----PRLPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSRMKILQIARAVERETMGDGGSG 260
P L E F F+ GL+G+I+ V L
Sbjct: 339 RRDHPYLQEPYFTSCFISGLRGDIKHDVCGQKPQGLLE---------------------- 376
Query: 261 HARPTRSSLGGNRANRSGSNRSSDWVFVKGSKETNS---GSGYNNSR--AGGNGPRNDRQ 315
S W K NS + +N +R GGN +N
Sbjct: 377 ----------------------SYWYAKNYEKAANSRKAAANFNRNRLQTGGNTGKN--- 411
Query: 316 AQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKCGGAFHPMHQCPDKQ-LRVLIMEDEE 374
N+ PR G +++++ C+ C + P HQC KQ + L++E+EE
Sbjct: 412 ---VYNKGQPRQEG----------DKKEEKKCWFCKEPWFPRHQCKVKQAIHALLVENEE 458
Query: 375 ----------EKEGGGNLLAVEVIEEEESSEGELSSMSLSQVEQVGKDKPQTIKLLGLIQ 424
E+E G ++ E+ E+ + EL MS+SQ G +P T ++ +
Sbjct: 459 SVEVEEDSVEEEEIKGEKQGEKLPEQTENVQEEL--MSISQSAVYGLTRPDTFSVMIKVN 516
Query: 425 GLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAG- 483
G V L+DSG+T F+ + K T+ +T ++ + G G+ K +I+ G
Sbjct: 517 GKKAVGLVDSGSTTTFMDSKFAIKSQCTLENTKMRKVIVAGG------GELKSELIVPGM 570
Query: 484 -----NHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHE 538
L L D++LG +W+ + ++ K+ M G + + +Q
Sbjct: 571 EYEIQGESFTNSFNLLSLERYDIILGADWIFKYSPITLDLRKREMKITKGGRELEIQDFT 630
Query: 539 EQEGLLVALQTMISRAGFSGYLGKE-KVQLEKDNKGVTGVQQAELDMILERHSVVFQAPK 597
+ + + G LG ++ D V ++ ++L+ V + PK
Sbjct: 631 KPGKYFQVSNKKMGKMIKKGALGCVIQINAITDQSNVEVGIPKDIQIVLQSFPKVLKEPK 690
Query: 598 GLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPV 657
GLPP+R+ H I LK G P N+RPYR PH QK +E+ + EL IR S S + SP
Sbjct: 691 GLPPRRSCDHVINLKVGSEPPNLRPYRVPHFQKGAMEDIITELFRTQEIRISDSPYVSPA 750
Query: 658 ILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRV 717
++V+KKD SWR+CVDYR LN TI +KFP+PIIE+LLDELHGA+ FSKLDL+SGYHQ+R+
Sbjct: 751 VMVRKKDGSWRLCVDYRQLNAQTIKNKFPMPIIEDLLDELHGAKVFSKLDLRSGYHQIRM 810
Query: 718 KEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYS 777
E D+ KTAFRTH GHYE+ VMPFGL NAP+TFQ+LMN + LRK VLVFF DIL+YS
Sbjct: 811 AEGDIPKTAFRTHLGHYEYNVMPFGLTNAPATFQALMNQVLAPFLRKFVLVFFADILIYS 870
Query: 778 KDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTS 837
K HLEH++ V+ L LV KKC FG ++V YLGH+IS +GV DP K+ + +
Sbjct: 871 KTQSEHLEHIKLVMQALSANQLVVRLKKCEFGLDRVSYLGHIISSEGVSTDPKKISDIKN 930
Query: 838 WPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKL 897
PKNV VR FLG+ GYYR+FI+ YG I +PL +L KK+GF+W + QEAFE LK+K+
Sbjct: 931 RKPPKNVTEVREFLGMAGYYRRFIKGYGVICRPLHDLLKKDGFKWGDTQQEAFELLKEKM 990
Query: 898 TTSPVLALPDFSKEFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMA 957
SPVLALPDFS+ F IE DA G+G+GA+LMQ+ RP+AYFSKALG + ++S YEKE +A
Sbjct: 991 CNSPVLALPDFSQPFVIETDACGIGIGAVLMQKGRPLAYFSKALGPKAAAQSVYEKEAIA 1050
Query: 958 LGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKL 1017
+ A++ WR Y+LG + TDQ+SLK ++ Q++V Q KL+ FD+ I YK GK
Sbjct: 1051 ILEALKKWRHYILGGSLIIKTDQQSLKFMMSQRLVEGIQHKLLLKLMEFDYVIEYKSGKE 1110
Query: 1018 NKGADALSRVNETLELRQMGSHV---DWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLG 1074
N ADALSR E + + V +W+ +D+K +D +I+ + D
Sbjct: 1111 NLVADALSRSPNLKEEQCLPITVVVPEWV--QDIKRSYEEDIFAHKILSLIETDGDPERH 1168
Query: 1075 YTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSA 1134
Y E+G+L Y+GR+ + + + +L +H + GGHSG TY R+ YW G+K
Sbjct: 1169 YKLESGLLKYKGRIYVGETTEIRMLLLEAYHASYFGGHSGIRATYHRIKQLFYWPGLKKQ 1228
Query: 1135 VQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVD 1194
V+ ++++C CQ K GLL PL +P+ W ++MDFI GLPKS+G + ILVVVD
Sbjct: 1229 VEHYIRECPTCQITKAEHIHIPGLLNPLEVPDMAWTHITMDFIEGLPKSQGKDVILVVVD 1288
Query: 1195 RLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGT 1254
RL+KYAHF+ L HPYT + V ++F I +LHG+P IV+DRD +F SNF++E+FK Q
Sbjct: 1289 RLTKYAHFLALSHPYTVEQVVQIFMDNIHKLHGMPMVIVTDRDRVFTSNFFQEIFKTQKV 1348
Query: 1255 KLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVT 1314
KL+ STA+HP++DGQ+E VN+CLE+YLR +P+ W W+ AE+WYNT +H S +T
Sbjct: 1349 KLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMT 1408
Query: 1315 PFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRS 1374
PF+ +YG PPP IT + E + L ++ L++L+ + AQ R+K +AD+ RS
Sbjct: 1409 PFQALYGYPPPQITEFAIPCNMSEEARVTLEDKALILQKLKSSIGEAQRRIKFYADKGRS 1468
Query: 1375 DRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVH 1434
+R+ +G+ V++KL+ +RQ ++ R KL +KYYGP+ V+ ++GAVAY+L+LP G+ +H
Sbjct: 1469 ERTLELGDMVYLKLQPYRQVAMGIRGSLKLRSKYYGPFKVIEKMGAVAYKLQLPDGAGIH 1528
Query: 1435 PVFHVSLLKKAVGTYH-EGEELPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKG 1493
PVFHVS LKK +G LP + DG I EP VL R + + + Q LI W+
Sbjct: 1529 PVFHVSQLKKHLGARAIPMPNLPAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWEN 1588
Query: 1494 QQPEEATWEDVDMIKSQFPSF 1514
P EATWED I++ FP+F
Sbjct: 1589 LTPAEATWEDASYIQAAFPNF 1609
>gb|AAP54595.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37536012|ref|NP_922308.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|10140673|gb|AAG13508.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1608
Score = 978 bits (2528), Expect = 0.0
Identities = 587/1563 (37%), Positives = 847/1563 (53%), Gaps = 94/1563 (6%)
Query: 12 KEMEAKIATLEAELSGVKSTLTTMERNQETLIALLEKSIGKTKVDDDSTGDNVT---PAK 68
K +E ++ +E ++ + S L T+ + LE SI + D+ G T P +
Sbjct: 44 KSLEVRLPAVEKKVEILSSDLATLNHK----VQQLESSIQRQPSGDEFAGKVTTAVLPKE 99
Query: 69 EADHGSG----------------SGKGSMTRLTGD--VLSEFRQSAKKVELPMFDGDDPA 110
E ++ S + +T +G+ + S + P F+GD+P
Sbjct: 100 ELNYHSTPFIKGQRDPEFASPDQQNQDGLTFQSGNSGLGGGIAGSIPPMSCPQFNGDNPQ 159
Query: 111 GWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYG 170
W S EVYF + P+ +A L G + S+ S+ TW + R+
Sbjct: 160 LWKSNCEVYFDIYGIHPQNWVKIATLNFCGNAAFWLQSVRSQLAGATWFELCDRVCGRFA 219
Query: 171 GQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRVRS 230
+ Q + Q +V +Y+ F+ + Q+ YF+ ++ +R
Sbjct: 220 RDRKQALIRQWIHITQTSSVADYVDRFDSIMHQLMAYGGSNDPAYFVTKFVDGLKDHIRV 279
Query: 231 MVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDWVFVKG 290
+V V+R D A +L G ++ + N ++ ++ K
Sbjct: 280 VVM---------------VQRPQDLDSACTVALLQEEALEGVQSVSNKKNETTTFLKTKP 324
Query: 291 SKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKGLCFKC 350
S S + S N + R + K R D+ SY RR KGLCF C
Sbjct: 325 SHNLTSPTFQARSIPFTN-IEDKRGVEFSKGRD---DKVSALRSY-----RRSKGLCFVC 375
Query: 351 GGAFHPMHQCPDK-QLRVL------IMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSL 403
G + H+C QL V+ + D EE N + E EE S +S +L
Sbjct: 376 GEKWGRDHKCATTVQLHVVEELINALKTDPEE-----NCNSEGAPESEEDSLMAISFQAL 430
Query: 404 SQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITL 463
+ G D ++I+L G +Q +++L+DSG+TH+F+ L +L ++++ +
Sbjct: 431 N-----GTDSSKSIRLRGWVQNTELLMLVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQV 485
Query: 464 GDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTM 523
DGSQ + H D +L LG+ D +LG++WL M V+W
Sbjct: 486 ADGSQLFCDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWV---- 541
Query: 524 SFWSGHKWVTLQGHEEQ---EGLLVALQTM--ISRAGFSGYLGKEKVQL-----EKDNKG 573
HKW+ Q H + +G+ L T IS G K V +
Sbjct: 542 -----HKWIAFQHHGQAVQLQGIHPQLSTCFPISNDQLQGMSKKGAVMCLVHLNVAETLT 596
Query: 574 VTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNEI 633
T V + + IL +F P LPPKRN H I L EG PVN+RPYRY K+EI
Sbjct: 597 ATTVPEI-VQPILNEFQEIFSEPTELPPKRNCDHHIPLVEGAKPVNLRPYRYKPALKDEI 655
Query: 634 ENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEEL 693
E QV E+L GVI+ S+S FSSP +LVKKKD +WR+C+DYR LN T+ K+P+P+I+EL
Sbjct: 656 ERQVAEMLRSGVIQPSSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDEL 715
Query: 694 LDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQSL 753
LDEL G+++FSKLDL++GYHQ+R+ E D +KTAF+TH GHYE+ VM FGL AP+TF S
Sbjct: 716 LDELAGSKWFSKLDLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLSA 775
Query: 754 MNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREKV 813
MN+ +LRK LVFFDDIL+YS HL+H++ VL +L KC F ++++
Sbjct: 776 MNETLSPVLRKFALVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQQEI 835
Query: 814 EYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLTE 873
YLGH+I GV DP+K++ V SWP P +K +RGFLGL GYYRKF+R +G I+KPLT+
Sbjct: 836 SYLGHVIGAAGVATDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLISKPLTQ 895
Query: 874 LTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEKR 932
L KK F+W+ + + AF+ LK+ L +PVLALPDFSK FTIE DAS VG+GA+L QEK
Sbjct: 896 LLKKGIPFKWTPEIESAFQQLKQALVAAPVLALPDFSKHFTIETDASDVGIGAVLSQEKH 955
Query: 933 PIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKVV 992
PIAY S+ALG + S YEKE MA+ LA++HWRPYL F + TD SL L +Q++
Sbjct: 956 PIAYLSRALGPKTRGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTEQRLH 1015
Query: 993 TMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETL-ELRQMGSHV-DWLGGKDLKE 1050
T QQ KLLG ++I Y+ G N ADALSR + E+ + + W+ ++L +
Sbjct: 1016 TPWQQKAFTKLLGLQYKICYRKGVSNAAADALSRRESPISEVAAISECIPSWM--QELMQ 1073
Query: 1051 EVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQG 1110
D + ++++ + +S Y GIL Y+G++ + + L H ++ E H TP G
Sbjct: 1074 GYQLDGQSKQLLAELAISPNSRKDYQLCQGILKYKGKIWVGNNTALQHKLVNELHATPLG 1133
Query: 1111 GHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWE 1170
GHSGF TYR++ + W GMK +++ ++ C VC + K + GLLQPLP+P W+
Sbjct: 1134 GHSGFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGAWQ 1193
Query: 1171 DLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPS 1230
+S+DFI GLP+S + ILVVVD+ SKY+HFIPL HP+ A VA+ F K I +LHG+P
Sbjct: 1194 TISLDFIEGLPRSSHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHGLPR 1253
Query: 1231 SIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPK 1290
+I+SDRD IF S FW +LF GT L MS+AYHP+SDGQ+E VN+CLE YLRCF+ P
Sbjct: 1254 AIISDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLRCFVHAAPH 1313
Query: 1291 TWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLERDEA 1350
W W+ AE+WYNT FH++ TPFEV+YG P + + ++ + + ER
Sbjct: 1314 KWSSWLYLAEFWYNTSFHSTLNKTPFEVLYGYTPSHFGIGLD-DCQIADLHEWHTERKFM 1372
Query: 1351 LRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAKYYG 1410
+ L+ L RAQ +MK AD+KRS R F++G+WV++KL+ + Q V R KLA +YYG
Sbjct: 1373 QQLLQQHLNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYG 1432
Query: 1411 PYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIEPTE 1470
P+ V++RVG VAY ++LP S +HPVFHVS LK AVG + ++ +L G L P +
Sbjct: 1433 PFQVMSRVGTVAYHIQLPATSSIHPVFHVSQLKAAVGFSKKVQD--ELPTSLGALQVPFQ 1490
Query: 1471 VLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAYGEGIDRT 1530
L R V+ +S+ Q+L W P E+TWED++ + ++FP +A GI R
Sbjct: 1491 FLDKRLVKKGNRSVLQLLTHWYHSSPSESTWEDMEDLFARFPRALAWGQASFQDWGIVRP 1550
Query: 1531 QGP 1533
P
Sbjct: 1551 SQP 1553
>gb|AAG51464.1| gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]
gi|25403233|pir||G86474 probable protein gypsy/Ty3
element polyprotein [imported] - Arabidopsis thaliana
Length = 1447
Score = 969 bits (2504), Expect = 0.0
Identities = 583/1537 (37%), Positives = 845/1537 (54%), Gaps = 158/1537 (10%)
Query: 8 KGASKEMEAKIATLEAELSG-VKSTLTTMERNQETLIALLEKSIGKTKVDDDSTGDNVTP 66
KG E E IAT +L V +M ++ +++ + ++ K + + D P
Sbjct: 13 KGKGVEKEDLIATRMTKLEEMVAEQHKSMLKHMADMMSAMSRTTAKRVTEGEKVLDRSVP 72
Query: 67 AKEADHGSGSGKGSMTRLTGDVLSEFRQSAK---------------KVELPMFDGDDPAG 111
+ SG R D +FR K++ P FDG
Sbjct: 73 RSSTSSMARSGFVEHQR---DFQRDFRPEMVRQEVNNQYGNLTRLGKIDFPRFDGSRINE 129
Query: 112 WISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENL----TWERFKCALLE 167
W+ + E +F V TP E++ + + + + +S + L W + L +
Sbjct: 130 WLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEYVKLLKD 189
Query: 168 RYGGQGDGDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGR 227
R+ D D +L +L++ + EY FE + ++ L E+ + +L GL+ + +
Sbjct: 190 RFEDACD-DPMAELKKLQETDGIVEYHQQFELIKVRL-NLSEEYLVSVYLAGLRTDTQMH 247
Query: 228 VRSMV--TMADLSRMKILQIARAVERETMGDGGSGHARPTRSSLGGNRANRSGSNRSSDW 285
VR T+ D L++ + ER A P ++ SS W
Sbjct: 248 VRMFEPKTVRDC-----LRLGKYYER----------AHPKKTV-------------SSTW 279
Query: 286 VFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDRGFTHLSYNELMERRQKG 345
K T SG Y +P K D HL G
Sbjct: 280 ----SQKGTRSGGSY----------------RPVKEVEQKSD----HL-----------G 304
Query: 346 LCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEGELSSMSLSQ 405
LC+ C F P H K+ ++ M+ +EE E AVEV+ +++ + + +S++
Sbjct: 305 LCYFCDEKFTPEHYLVHKKTQLFRMDVDEEFED-----AVEVLSDDDHEQKPMPQISVNA 359
Query: 406 VEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGD 465
V + K +K G + + ILIDSG+THNF+ +++ KLG V ++ + D
Sbjct: 360 VSGISGYKTMGVK--GTVDKRDLFILIDSGSTHNFIDSTVAAKLGCHVESAGLTKVAVAD 417
Query: 466 GSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSF 525
G + G+ K + D L L VDMVLG++WL TLG + + K M F
Sbjct: 418 GRKLNVDGQIKGFTWKLQSTTFQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQF 477
Query: 526 WSGHKWVTLQG-----------HEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKDNKGV 574
+ ++ V L G H+ Q+ T + + +E V E+ G
Sbjct: 478 FYKNQRVWLHGIITGSVRDIKAHKLQK-------TQADQIQLAMVCVREVVSDEEQEIGS 530
Query: 575 TG------VQQAELDMILERHSVVFQAPKGLPPKRNKQ-HAITLKEGEGPVNVRPYRYPH 627
V+++ + I+E VF P LPP R K H I L EG PVN RPYRY
Sbjct: 531 ISALTSDVVEESVVQNIVEEFPDVFAEPTDLPPFREKHDHKIKLLEGANPVNQRPYRYVV 590
Query: 628 HQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPI 687
HQK+EI+ V+++++ G I+ S+S F+SPV+LVKKKD +WR+CVDY LN T+ D+F I
Sbjct: 591 HQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLI 650
Query: 688 PIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAP 747
P+IE+L+DEL G+ FSK+DL++GYHQVR+ +D+ KTAF+TH GH+E+LVM FGL NAP
Sbjct: 651 PLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAP 710
Query: 748 STFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCL 807
+TFQSLMN +FR LRK VLVFFDDIL+YS H EHL+ V ++R L A K
Sbjct: 711 ATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK-- 768
Query: 808 FGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKI 867
E+LGH IS + +E DP+K+++V WPTP VK VRGFLG GYYR+F+R++G I
Sbjct: 769 ------EHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGYYRRFVRNFGVI 822
Query: 868 AKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAIL 927
A PL LTK +GF WS +AQ AF+TLK L +PVLALP F K+F +E DA G G+ A+L
Sbjct: 823 AGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRAVL 882
Query: 928 MQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELL 987
MQ+ P+AY S+ L + L S YEKEL+A A++ WR YLL HF + TDQRSLK LL
Sbjct: 883 MQKGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLL 942
Query: 988 QQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKD 1047
+Q++ T QQ W KLL FD+EI Y+ GK N ADALSRV + L S V+ K+
Sbjct: 943 EQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSEVLHMALSIVECDFLKE 1002
Query: 1048 LKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTT 1107
++ D L+ II ++ + D+ Y++ IL + ++V+P + + + +L H +
Sbjct: 1003 IQVAYESDGVLKDIISALQQHPDAKKHYSWSQDILRRKSKIVVPNDVEITNKLLQWLHCS 1062
Query: 1108 PQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPER 1167
GG SG +++R+ + YW+GM +Q F++ C CQ+ K ++ GLLQPLPIP++
Sbjct: 1063 GMGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDK 1122
Query: 1168 IWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHG 1227
IW D+SMDFI GLP S G I+VVVDRLSK AHF+ L HPY+A +VA+ F + + HG
Sbjct: 1123 IWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHG 1182
Query: 1228 VPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIAD 1287
P+SIVSDRD +F S+FW+E FKLQG +L+MS+AYHP+SDGQ+EVVNRCLE YLRC
Sbjct: 1183 CPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHA 1242
Query: 1288 QPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELLER 1347
+P W W+P AEYWYNT +H+S+ +TPFE+VYG+ PP ++ G+++V V + L ER
Sbjct: 1243 RPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQER 1302
Query: 1348 DEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLAAK 1407
+ L L+ L RAQ RMKQFAD+ R++R+F IG++V+VKL+ +RQ+SVV R+ KL+ K
Sbjct: 1303 ENMLLFLKFHLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPK 1362
Query: 1408 YYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEGDGGILIE 1467
Y+GPY ++ + G V VG +LP + D + E
Sbjct: 1363 YFGPYKIIEKCGEV-----------------------MVGNVTTSTQLPSVLPD---IFE 1396
Query: 1468 --PTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWE 1502
P +L + V+ QG++ +L++W G+ EEATW+
Sbjct: 1397 KAPEYILERKLVKRQGRAATMVLVKWIGEPVEEATWK 1433
>gb|AAF79797.1| T32E20.30 [Arabidopsis thaliana]
Length = 1397
Score = 968 bits (2502), Expect = 0.0
Identities = 536/1202 (44%), Positives = 726/1202 (59%), Gaps = 118/1202 (9%)
Query: 337 ELMERRQKGLCFKCGGAFHPMHQCPDKQLRVLIMEDEEEKEGGGNLLAVEVIEEE-ESSE 395
+L E+R+KG+CF+C G + H+CP+K+LRVL + + E E +L +EEE S
Sbjct: 294 KLDEKRRKGICFRCDGPWSKEHKCPNKELRVLTVINGFEME----VLESNSVEEEFHDSV 349
Query: 396 GELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVD 455
+ + +S S +G TIK+ G I H T
Sbjct: 350 AQFAELSFSSY--MGLPSYTTIKMKGSI-----------------CKGEWCH----TQFY 386
Query: 456 TPSLRITLGDGSQARTKGKCKE----LMIIAGNH-PLCVDAQLFELGNVDMVLGIEWLRT 510
P+ I LG G + G C + L + G L +LG VD++LGI WLRT
Sbjct: 387 FPNFHIRLGTGITVQGLGLCDKVTMTLPVGCGQELELTTHFITLDLGPVDVILGIAWLRT 446
Query: 511 LGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQLEKD 570
LGD VNW++ +SF + VTL+G E + ++L++ ++
Sbjct: 447 LGDCKVNWERHELSFLYHGRTVTLRGDPELDTFKMSLKSFSTKFR--------------- 491
Query: 571 NKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQK 630
+Q EL++ L H Q KGLPP + +HAI+L G ++VRPYRYPH K
Sbjct: 492 ------LQNKELEVSLNSH----QNLKGLPPIKGNEHAISLLPGTRAISVRPYRYPHAHK 541
Query: 631 NEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPII 690
+E V E+L+ G+IR S S FSSPV+LVKKKD SWR CVDYRALN+ATIP+KFPIP+I
Sbjct: 542 EAMEGLVSEMLDNGIIRASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATIPNKFPIPMI 601
Query: 691 EELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTF 750
++LLDELHGA FSKLDL++GYHQ+R+K ED+ KT FRTH+GH+EFLVMPFGL NAP+TF
Sbjct: 602 DQLLDELHGAIIFSKLDLRAGYHQIRMKVEDIEKTTFRTHDGHFEFLVMPFGLSNAPATF 661
Query: 751 QSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGR 810
QS MND+ R LRK VLVFFDDIL+YS++ H EHL VL +L E ANRKK
Sbjct: 662 QSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYANRKKPY--- 718
Query: 811 EKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKP 870
H+ QGV DP+K ++T W TP++VK +RGFLGLTGYYR+F++ YG +A+P
Sbjct: 719 -------HIT--QGVSTDPTKTVAMTKWVTPQSVKELRGFLGLTGYYRRFLKGYGTLARP 769
Query: 871 LTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQE 930
LTEL KK+ F WSE AQEAF+ LK+ ++T+PVLALPDF K G ++
Sbjct: 770 LTELLKKDSFVWSESAQEAFDALKRAMSTAPVLALPDFGKVH-----------GLTSKEQ 818
Query: 931 KRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQK 990
+P+ YE+ELMA+ L+IQ W+ YL+GR F + TDQ+SLK L +Q+
Sbjct: 819 LKPV----------------YERELMAIVLSIQKWKHYLMGRRFVLHTDQKSLKFLQEQR 862
Query: 991 VVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNE-----TLELRQMGSHVDWLGG 1045
V+M+ Q W KLL ++F+I YK G NK AD LSR+ + + L + L
Sbjct: 863 EVSMDYQKWLTKLLHYEFDILYKLGVDNKAADGLSRMVQPTGSFSSMLLMAFTVPTVLQL 922
Query: 1046 KDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFH 1105
DL EE+ + LQ ++K K + YT + G L + RL++P++S + +L E+H
Sbjct: 923 HDLYEEIDSNAHLQHLVKECLSAKQGTSAYTVKEGRLWKKQRLIIPKDSKFLPLILAEYH 982
Query: 1106 TTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIP 1165
+ GGHSG +T +R+ + +W GM +Q FV +C++CQRQKY SP GLLQPLPIP
Sbjct: 983 SGLLGGHSGVLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLLQPLPIP 1042
Query: 1166 ERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRL 1225
++WED+S+DF+ GLP DRLSKY HFI LKHP+ A VA +F E+V+L
Sbjct: 1043 TQVWEDISLDFVEGLP------------DRLSKYGHFIGLKHPFNAVDVARIFIHEVVKL 1090
Query: 1226 HGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFI 1285
HG P+SIVSDRD F+S+FW++ FKL GTKLK STA+HP++DGQ+EV+NR LETYLRCF
Sbjct: 1091 HGFPASIVSDRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLETYLRCFA 1150
Query: 1286 ADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAVQKELL 1345
+ PKTW ++P AE WYN+ FH + TPF+V+YGR PP I R+ T+ ++ L
Sbjct: 1151 SAHPKTWFQYLPRAELWYNSSFHTTIKTTPFKVLYGRDPPPIMRFEANSTKNCELEGLLK 1210
Query: 1346 ERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLA 1405
+RD L ++ L AQ MK D+ R + F VF+KLR +RQ SV R+ KLA
Sbjct: 1211 QRDLMLADIKEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSVTKRVCQKLA 1270
Query: 1406 AKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPD-LEGDGGI 1464
AKY+GP+ ++ R+G VAY+LKLP GSK+H VFHVS LK+ +G +H+ LP+ L D
Sbjct: 1271 AKYFGPFEIMERIGKVAYRLKLPEGSKIHLVFHVSQLKQVLGDHHQVIPLPEVLTADNEF 1330
Query: 1465 LIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKARAYG 1524
++ P VL TR + + L+ W+G E TWE +K QFP L+DK G
Sbjct: 1331 VVVPEAVLETR---YNEDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPGLALQDKLHVEG 1387
Query: 1525 EG 1526
G
Sbjct: 1388 GG 1389
Score = 94.0 bits (232), Expect = 4e-17
Identities = 64/251 (25%), Positives = 121/251 (47%), Gaps = 8/251 (3%)
Query: 9 GASKEMEAKIATLEAELSGVKSTLTTMERN----QETLIALLEKSIGKTKVDDDSTGDNV 64
G + +A+++TL++++ + + + + + L LL G V +
Sbjct: 35 GKIRSSDARLSTLDSKIGSLDDKMGSQDLKFGAIERKLELLLNSMPGIATVQEVGGTSQT 94
Query: 65 TPAKEADHGSGSGKGSMTRLTGDVLSEFRQSA-KKVELPMFDGDDPAGWISRAEVYFRVQ 123
P + DH + + G + R++ K VE+PMFDG GWI+R E +FR
Sbjct: 95 LPPRSQDHRNQVRVSQLEPCRGVIRPRIRENLLKNVEMPMFDGSGIYGWIARVERFFRSG 154
Query: 124 DTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYGGQGDGDVYEQLTE 183
+ +L + + G + ++N +S + ++W + K L+ R+G + L
Sbjct: 155 GYNEAEQLALVSVSVSGEALSWYNWAISRGDFVSWLKLKSGLMLRFGNLKLRGPSQSLFC 214
Query: 184 LRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFLHGLKGEIRGRVRSMVTMADLSRMKIL 243
++Q G+V EY+ FE L++Q+ L +++ G FL+GL GE++ V M +L M +
Sbjct: 215 IKQTGSVAEYVQRFEDLSSQVGGLDDQKLEGIFLNGLTGEMQELVH-MHKPQNLPEM--V 271
Query: 244 QIARAVERETM 254
+AR++E M
Sbjct: 272 AVARSMETSVM 282
>gb|AAL76001.1| putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 967 bits (2500), Expect = 0.0
Identities = 556/1446 (38%), Positives = 808/1446 (55%), Gaps = 87/1446 (6%)
Query: 98 KVELPMFDGDDPAGWISRAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLT 157
+V P FDGD+P W + E YF + D P + +A + G + S+ L+
Sbjct: 174 RVNFPQFDGDNPQLWKTLCENYFDMYDVEPYMWIRVATMHFIGRAASWLQSVGRRVCMLS 233
Query: 158 WERFKCALLERYGGQGDGDVYEQLTELRQRGTVEEYITAF----EYLTAQIPRLPEKQFL 213
W F L +R+G + + QL + Q GTV EY+ F ++L+A +
Sbjct: 234 WSEFCRQLQDRFGREQHESLIRQLFHIHQSGTVAEYVEQFSILVDHLSAYEANADPLYYT 293
Query: 214 GYFLHGLKGEIRG-----RVRSMVTMADLSRMKILQIARAVERETMGDGGSGHARPTRSS 268
F+ GL+ +I+ R ++ T L+ ++ + A R + S HA P
Sbjct: 294 MRFIDGLRDDIKAVIMVQRPSNLDTACSLALVQ--EEATTARRWRRSEPSSSHAGP---- 347
Query: 269 LGGNRANRSGSNRSSDWVFVKGSKETNSGSGYNNSRAGGNGPRNDRQAQPEKNRSTPRDR 328
++G S+ + T S S +K S R R
Sbjct: 348 -------KTGVQLSASTKWTSNKDSTQSAS------------------HSDKLESLRRFR 382
Query: 329 GFTHLSYNELMERRQKGLCFKCGGAFHPMHQCP-DKQLRVLIMEDEEEKEGGGNLLAVEV 387
R KGLC KC ++P H+C QL + E +LL E
Sbjct: 383 -------------RAKGLCDKCAEKWNPGHKCAATAQLHAM--------EEVWSLLVDEE 421
Query: 388 IEEEESSEGELSS----MSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVST 443
+ E + S E + +++S+ G QT+KL G IQ P++ILIDSG++H F++
Sbjct: 422 VPESDLSPPEPAPEQLFVTISKSAWTGSTGRQTLKLNGSIQNHPLLILIDSGSSHTFLND 481
Query: 444 SLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVL 503
L L +L++ + +G+ K + N D L DMV+
Sbjct: 482 QLRPHLQGVTSMASTLQVQVANGAMVTCHYKLLQAQWQIQNCSFTSDVSFLPLPYYDMVV 541
Query: 504 GIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKE 563
G++WL + M V+W +K + V LQG+ ++ + + S
Sbjct: 542 GMDWLESFSPMRVDWAQKWLIIPYQGSSVLLQGNTAGVPADTVIELLFMESASS------ 595
Query: 564 KVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPY 623
V D+ + +L++ S VF P+GLPP R+ HAI L EG PV+VRPY
Sbjct: 596 -VSSSPDS-------HPAIQALLQQFSSVFAEPQGLPPSRDCDHAIPLVEGAQPVSVRPY 647
Query: 624 RYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPD 683
RYP K++IE QV+E+L GVI+ S SSF+SPV+LVKKKD +WR CVDYR LN T+
Sbjct: 648 RYPPALKDKIEKQVQEMLHQGVIQKSNSSFASPVLLVKKKDMTWRFCVDYRYLNALTLKS 707
Query: 684 KFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGL 743
K+P+P+ ++L+DEL +++FSKLDL++GYHQ+ +K + +KTAF+TH GHYEF VM FGL
Sbjct: 708 KYPVPVFDQLIDELAHSKWFSKLDLRAGYHQILLKPGEEYKTAFQTHVGHYEFRVMAFGL 767
Query: 744 MNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANR 803
AP+TF S MN+ + +LRK LVFFDDIL+YSK + HL HLQ+VL +L
Sbjct: 768 TGAPNTFLSAMNETLKPVLRKCALVFFDDILIYSKSFEEHLLHLQKVLQLLLSDNWKVKL 827
Query: 804 KKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRD 863
KC F + YLGH+IS QGV PSK+++++SW P + K +R FLGL G+YRKF++
Sbjct: 828 SKCEFAKTNTAYLGHIISEQGVSTYPSKIQAISSWAVPTSAKELRCFLGLAGFYRKFVKH 887
Query: 864 YGKIAKPLTELTKKNG-FEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVG 922
+G I++PL +L KK+ F W+ +AFE LK+ L T+PVLALPDFS+ F I DAS G
Sbjct: 888 FGIISRPLFDLLKKHTLFVWTVDHSKAFEVLKQALVTAPVLALPDFSQPFCIHTDASYYG 947
Query: 923 VGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRS 982
VGA+LMQ P+A+ SKALG +N S YEKE MA+ LAI WR YL F + TD RS
Sbjct: 948 VGAVLMQSGHPLAFLSKALGPKNQGLSTYEKEYMAIILAIAQWRSYLQLAEFIIYTDHRS 1007
Query: 983 LKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSR-VNETLELRQMGSHV- 1040
L +L +Q++ T+ QQ KL G ++I Y+ G N ADALSR V E + V
Sbjct: 1008 LAQLNEQRLHTIWQQKMYTKLAGLQYKIVYRKGVDNGAADALSRKVQEDSHCCAISHSVP 1067
Query: 1041 DWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTM 1100
WL +++ E KD ++++ + ++ GI+ ++ R+ L L +
Sbjct: 1068 TWL--QEVVEGYDKDPTSKQLLAQLILNSADKAPFSLHQGIIRHKNRIWLGGNLQLQQKV 1125
Query: 1101 LTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQ 1160
L H T GGHSG TY ++ YW GM++ V +V+ C VCQ+ K + GLLQ
Sbjct: 1126 LQAMHDTAVGGHSGAPATYHKVKQMFYWPGMRADVLQYVQSCTVCQQSKPDRAKYPGLLQ 1185
Query: 1161 PLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGK 1220
PL +P + W +S+DFI GLP+S + ILVVVD+ SKY HF+PL HP+TA VA VF
Sbjct: 1186 PLEVPPQAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPFTAAKVARVFLD 1245
Query: 1221 EIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETY 1280
+ +LHG+P +I+SDRD IF S+FW++LF++ GT L MS++YHP+SDGQ+E +N+CLET+
Sbjct: 1246 NVYKLHGLPVNIISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQTERLNQCLETF 1305
Query: 1281 LRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGETRVEAV 1340
LRC++ P W W+ AEYWYNT H++ G TPFEV+YG P + +
Sbjct: 1306 LRCYVHTCPSRWSAWLSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPEL 1365
Query: 1341 QKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRI 1400
+ L ER+ + ++L L RAQDRMK+ AD++RS+R FS+G+WV++KL+ + Q SV TR
Sbjct: 1366 ETWLKERELMTKVIKLHLHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYIQSSVATRS 1425
Query: 1401 YAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGEELPDLEG 1460
KL+ K++GP+ + R+G+VAY+L LP S +HP+FHVS LK+ +G + P L
Sbjct: 1426 NHKLSFKFFGPFQITDRLGSVAYRLALPASSSIHPIFHVSQLKRVIG--RDQRASPQLPQ 1483
Query: 1461 DGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKA 1520
D G + PT +L R + G+ I Q+ + W G + ATWEDV+ ++++FP + D+A
Sbjct: 1484 DVGPIQVPTRILQRRFIDRGGELIAQVKVVWSGMTEDLATWEDVEALRARFPKALIWDQA 1543
Query: 1521 RAYGEG 1526
A G+G
Sbjct: 1544 GARGQG 1549
>ref|NP_908831.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1522
Score = 958 bits (2477), Expect = 0.0
Identities = 522/1189 (43%), Positives = 716/1189 (59%), Gaps = 27/1189 (2%)
Query: 341 RRQKGLCFKCGGAFHPMHQC---PDKQLRVLIMEDEEEKEGGGNLLAVEVIEEEESSEG- 396
RR GLCFKCG + P H C QL+ + E ++L E+++ + E
Sbjct: 323 RRTHGLCFKCGEKYSPAHTCGKTEGAQLKTM------EVSSSDDVLTDEILDVVTAFEQL 376
Query: 397 ELSSMSLSQVEQVGKDKPQTIKLLGLIQGLPIVILIDSGATHNFVSTSLVHKLGKTVVDT 456
+M LS G +++L L ++IL+DSG++H+F++ L KL +
Sbjct: 377 PDDNMLLSLQAVAGTSATHSLQLRALAGNQVVIILVDSGSSHSFINADLCSKLNLSTDPI 436
Query: 457 PSLRITLGDGSQARTKGKCKELMIIAGNHPLCVDAQLFELGNVDMVLGIEWLRTLGDMIV 516
P + + +G + + + E ++ +G D+VLG++WL M
Sbjct: 437 PVSTVKVANGETLQCEAQVSEFSWWIQGCTFVSSLKVLSMGGHDIVLGMDWLSKFSPMTC 496
Query: 517 NWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTMISRAGFSGYLGKEKVQLEK----DNK 572
NW + + F K V LQG + + L L + S +G + L +
Sbjct: 497 NWADRWLEFTYQGKLVKLQGIQSHQ--LQYLSEVSSDQMMKWQVGNDIWALAVVDCLSSP 554
Query: 573 GVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYRYPHHQKNE 632
A + +L+++S VFQ GLPP R H+I L G PVN RPYRY QK+E
Sbjct: 555 LCDSAVPASIQDVLQKYSSVFQPSAGLPPHRELDHSIPLVPGAIPVNSRPYRYSPAQKDE 614
Query: 633 IENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDKFPIPIIEE 692
IE QV+E+LE G+I S S F+SPV+LVKKKD++WR CVDYR LN TI +KFP+PI++E
Sbjct: 615 IEKQVQEMLESGLISRSCSPFASPVLLVKKKDNTWRFCVDYRRLNAITIKNKFPLPIVDE 674
Query: 693 LLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLMNAPSTFQS 752
LLDEL G R+FSKLDL+SGYHQ+R+KE D KTAF+TH GH++F VMPFGL NAP+TFQ
Sbjct: 675 LLDELAGTRFFSKLDLRSGYHQIRMKETDEEKTAFKTHHGHFQFRVMPFGLTNAPATFQC 734
Query: 753 LMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRKKCLFGREK 812
LMN IF LRK VLVF DDILVYS +H HL VL +L++ L A KC F +
Sbjct: 735 LMNSIFEPYLRKFVLVFMDDILVYSPSLETHAIHLDTVLQVLQQHQLSAKLSKCSFAASQ 794
Query: 813 VEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDYGKIAKPLT 872
+EYLGH+IS GV DP K + WP P NV +RGFLGLTGYYRKF+++YG IAKPLT
Sbjct: 795 LEYLGHIISADGVATDPEKTRIMRDWPVPTNVTELRGFLGLTGYYRKFVKNYGVIAKPLT 854
Query: 873 ELTKKNG-FEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGVGAILMQEK 931
L +KN F W++ A AF LK + ++PVLALPDF+K F +E DA G+GA+L QE
Sbjct: 855 VLLQKNAKFIWTDSANSAFLQLKHAMCSTPVLALPDFTKTFVLETDACATGIGAVLSQEG 914
Query: 932 RPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSLKELLQQKV 991
PIA++SKALG+ N S YEKE +A+ +AI WR YLL F + TD +SL L Q +
Sbjct: 915 HPIAFYSKALGMANQKLSIYEKEFLAIMMAIDKWRSYLLRGPFTIKTDHQSLCHLDDQIL 974
Query: 992 VTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVNETLELRQMGSHVDWLGGKDLKEE 1051
+ Q+ KL+G ++ YK G NK ADALSRV L G + W+ +++
Sbjct: 975 GSELQRKAMTKLIGLQYKFQYKRGVDNKSADALSRVGH-LFATVSGPYPKWI--QEVVNS 1031
Query: 1052 VSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLTEFHTTPQGG 1111
+ D + Q+++ + + G+ G++ ++ + S L ++ FH++P GG
Sbjct: 1032 YATDADAQQLLTELAVSSPNDKGFMLSGGLIKKHDKIWVGANSGLQSKLIAVFHSSPIGG 1091
Query: 1112 HSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPLPIPERIWED 1171
HSG + TY RL W GMK AV++FV+QC VCQ+ K+ GLLQPLPIPE W+D
Sbjct: 1092 HSGIHATYHRLKKLFVWTGMKQAVEEFVQQCGVCQQAKHEHCKYPGLLQPLPIPEGSWQD 1151
Query: 1172 LSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEIVRLHGVPSS 1231
+SMDFI GLP SKG ILVVVDR +KYAHF+ LKHP++A VAE+F + +L+G+P S
Sbjct: 1152 ISMDFIEGLPLSKGANTILVVVDRFTKYAHFLSLKHPFSASQVAELFLDRVAQLYGMPKS 1211
Query: 1232 IVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLRCFIADQPKT 1291
IVSDRD +F S+FW+ LF G L MSTAYHP+SDGQ+E VN+CLE YLRC +A+ P
Sbjct: 1212 IVSDRDRVFTSSFWKTLFARFGIPLNMSTAYHPQSDGQTERVNQCLEMYLRCAVANTPSK 1271
Query: 1292 WVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPP-----PTITRWIQGETRVEAVQKELLE 1346
W W+P A++WYNT FH S +P + +YG P P+++ E+ LL+
Sbjct: 1272 WASWLPLAQFWYNTSFHTSLKCSPHKALYGSDPSYGLLPSLSVEASDESSSSKDATALLK 1331
Query: 1347 -RDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIYAKLA 1405
R L+ LARAQ+ MKQ AD KR+ R F +G+ VF+KL+ + Q SVV R KLA
Sbjct: 1332 ARSFYSSTLQHHLARAQNHMKQVADSKRTLRVFQVGDSVFLKLQPYAQTSVVNRPCHKLA 1391
Query: 1406 AKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTY-HEGEELPDLEGDGGI 1464
KY+GP+P++ RVG+VAY+L+LPP S+VH VFHVS LK +V ++ LPD+
Sbjct: 1392 MKYFGPFPILERVGSVAYKLQLPPASQVHSVFHVSQLKPSVPSHVPVYTSLPDVVALDVE 1451
Query: 1465 LIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPS 1513
+ PTE+L R V+ +I Q+ ++W ATWED D+I+++FP+
Sbjct: 1452 DLIPTEILDCRMVKKGNAAIVQVRVRWGSLPDNMATWEDYDVIRTRFPA 1500
Score = 64.7 bits (156), Expect = 2e-08
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 55 VDDDSTGDNVTPAKEADHGSGSGKGSMTRLTGDVLSEFRQSAKKVELPMFDGDDPAGWIS 114
+ D+ + P E + SG+ + R DV R K++ P FDG D W+
Sbjct: 89 LSQDAASTSTQPPPEVEVPVRSGQPPV-RDNSDVQGR-RSWVPKMDFPKFDGTDVCVWVD 146
Query: 115 RAEVYFRVQDTPPEVRASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYGGQGD 174
E YF + + S A L M G H++ + E TWE+ + A+L +
Sbjct: 147 NCETYFALYQITEGFKVSAASLNMIGDAAHWYQAWKQERGWPTWEQLREAVLNEFEINIK 206
Query: 175 GDVYEQLTELRQRGTVEEYITAFEYLTAQIPRLPEKQFLGYFL-----HGLKGEIR 225
E+L L Q GTV EY + F L I RL + G FL GLK E+R
Sbjct: 207 RAKMEELLLLTQTGTVSEYRSKFLQLVYHI-RLYDPATSGLFLVSRFVMGLKDELR 261
>gb|AAP52741.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532304|ref|NP_920454.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|20270059|gb|AAM18147.1| Putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|18958673|gb|AAL82656.1| retrotransposon protein,
putative, unclassified [Oryza sativa (japonica
cultivar-group)]
Length = 1338
Score = 911 bits (2354), Expect = 0.0
Identities = 495/1127 (43%), Positives = 669/1127 (58%), Gaps = 77/1127 (6%)
Query: 431 LIDSGATHNFVSTSLVHKLGKTVVDTPSLRITLGDGSQARTKGKCKELMIIAGNHPLCVD 490
LIDSG H F+S ++G+ L +T+ +G + G ++ +
Sbjct: 276 LIDSGLMHTFLSQDTAARVGRAPQPRMGLNVTVANGDKVACPGVFPDMPL---------- 325
Query: 491 AQLFELGNVDMVLGIEWLRTLGDMIVNWDKKTMSFWSGHKWVTLQGHEEQEGLLVALQTM 550
+ G E+ + D V TMSFW L GH+ L A
Sbjct: 326 ----------QIAGEEFATDVYDFTV----LTMSFWHRVTLHGLPGHQRPRALACA---- 367
Query: 551 ISRAGFSGYLGKEKVQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAIT 610
A LD +LE + VF P GLPP R++ H I
Sbjct: 368 ---------------------------PAALLDSLLEEFADVFTEPTGLPPARDRSHRIQ 400
Query: 611 LKEGEGPVNVRPYRYPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMC 670
L G PV VRPYRYP K+E+E Q + + E G+I STS+FSSPV+LVKK D SWR C
Sbjct: 401 LLPGTAPVAVRPYRYPVRHKDELERQCRVMEENGLIHRSTSAFSSPVLLVKKADGSWRFC 460
Query: 671 VDYRALNKATIPDKFPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTH 730
V+YRALN+ T+ DK+PIP+++ELLDELHGA FSKLDL+SGYHQVR+ +D+ KTAFRTH
Sbjct: 461 VNYRALNERTVKDKYPIPVVDELLDELHGAAIFSKLDLRSGYHQVRMHPDDIDKTAFRTH 520
Query: 731 EGHYEFLVMPFGLMNAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEV 790
+G YEFLV+PFGL NA +TFQSLMND+ R LR+ VLVFFDDILVYS W SHL+HL+ V
Sbjct: 521 DGLYEFLVIPFGLTNALATFQSLMNDVLRPFLRRFVLVFFDDILVYSPTWTSHLQHLRTV 580
Query: 791 LGILREQGLVANRKKCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGF 850
L L KC FG V YLGH+IS G +D +K+++V WP P++ K +RGF
Sbjct: 581 FTALWAAQLFVKHTKCSFGDPSVAYLGHIISQHGFAMDAAKIQAVAEWPRPRSPKELRGF 640
Query: 851 LGLTGYYRKFIRDYGKIAKPLTELTKKNGFEWSEKAQEAFETLKKKLTTSPVLALPDFSK 910
LGL YYRKFI+D+G +A PLT+L +K+ F W+ +AF+ LK LTT+PVL+LPDF++
Sbjct: 641 LGLASYYRKFIQDFGSVAAPLTQLLRKDSFAWAPATDDAFQRLKLALTTTPVLSLPDFNR 700
Query: 911 EFTIECDASGVGVGAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLL 970
F +ECDASG G GA+L Q + PIAYFS+ + R+ + +AYE+EL++L A++HWRPYL
Sbjct: 701 PFVVECDASGTGFGAVLHQGEDPIAYFSRPIATRHHALAAYERELISLVQAVRHWRPYLW 760
Query: 971 GRHFKVTTDQRSLKELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALS--RVN 1028
GR F V TD SLK LL Q++ T+ Q +W +KLLGFDF + YKPGK N ADALS
Sbjct: 761 GRQFIVKTDHYSLKFLLDQRLSTIPQHHWVSKLLGFDFVVEYKPGKQNAAADALSCRAAP 820
Query: 1029 ETLELRQMGSHVDWLGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRL 1088
++ D L KD++ D LQ + ++ ++ + +G++ Y+ R+
Sbjct: 821 DSQAFVLSTPTFDLL--KDIRTAGDTDPALQALRDEINSGTRTT-PWAVIDGLVTYKRRI 877
Query: 1089 VLPRESPLIHTMLTEFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQ 1148
+P SP + ++ H GH G +T RL + + + V D ++ C CQR
Sbjct: 878 YIPPGSPWVSVVVAAAH---DDGHEGIQKTLHRLRRDFHTPDDRRVVHDHIQGCLTCQRN 934
Query: 1149 KYLASSPGGLLQPLPIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHP 1208
K P GLL PLP+P IW D++MDF+ GLP+ G IL VVDR SKYAH I L H
Sbjct: 935 KTDHLHPAGLLLPLPVPSAIWSDVAMDFVEGLPRVGGKSVILTVVDRFSKYAHLIALAHS 994
Query: 1209 YTAKSVAEVFGKEIVRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDG 1268
YTA++VA F +IVRLHGVP SIVSDRDP+F S FW LF TKL STA+HP+SDG
Sbjct: 995 YTAETVARAFFVDIVRLHGVPESIVSDRDPVFTSAFWTALFTATCTKLHRSTAFHPQSDG 1054
Query: 1269 QSEVVNRCLETYLRCFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTIT 1328
QS+ VN+ + LRC D+ + W+ W+PWAEY YNT FHA+ TPF++VYGR PP+I
Sbjct: 1055 QSKAVNKAIAMCLRCMTGDRSRQWLRWLPWAEYIYNTSFHAALRDTPFKLVYGRDPPSIR 1114
Query: 1329 RWIQGETRVEAVQKELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKL 1388
+ E RV AV + + ERD L +RL+L +AQ K++ D+K + SF +G WV++++
Sbjct: 1115 AYDASELRVAAVAQSIEERDAFLADVRLRLEQAQQYAKRYYDQKHREVSFEVGAWVWLRV 1174
Query: 1389 RAHRQKSVVTRIYAKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGT 1448
R S+ + KL ++YGPY VVA + VAY+L LPPG+++H VFHV LLK VG
Sbjct: 1175 RHRVPASLPEAVKGKLRPRFYGPYRVVAVINEVAYRLALPPGTRLHDVFHVGLLKPFVGV 1234
Query: 1449 YHEGE-ELPDLEGDGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMI 1507
LP ++ G P +VL R + ++Q+L+QW+G +WED+D
Sbjct: 1235 SPSAPLALPPIQ-HGAAQPVPRQVLRARL----ARGVRQLLVQWEGLPASATSWEDLDDF 1289
Query: 1508 KSQFPSFCLEDKARAYGE-----GIDRTQGPQQASDAPLIADGAVGP 1549
++++PSF L D+ G GI + QQA L A A+GP
Sbjct: 1290 RNRYPSFQLADELLIEGGRDVMWGIPFRRRKQQAG---LGAGRAIGP 1333
Score = 58.5 bits (140), Expect = 2e-06
Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 23/210 (10%)
Query: 24 ELSGVKSTLTTMERNQETLIALLEKSIG--KTKVDDDST----------------GDNVT 65
ELSG+ + + +R Q I LE ++ DD S GD
Sbjct: 22 ELSGLITDIDQQQRTQTLAINRLENGARAPSSRFDDLSDVGDRNGGRFAHHNVGRGDRYG 81
Query: 66 PAKEADHGSGSGKGSMTRLTGDVLSEFRQSAKKVELPMFDG-DDPAGWISRAEVYFRVQD 124
+ HG G G GD + K++ P FDG DP +++R E +FR Q
Sbjct: 82 RGGDGFHGHGRPGGHRFDGDGDRPPRYH----KLDFPKFDGRGDPLPFLNRCEQFFRGQR 137
Query: 125 TPPEVRASLAQLCMEGPTIHFFNSLLSEEENLTWERFKCALLERYGGQGDGDVYEQLTEL 184
TP + + LA + ++ L + E +W RF L RYG +L
Sbjct: 138 TPEDNKVWLASYHLLDGAQQWYTRLERDHEPPSWHRFSELLNMRYGPPLHSTPLGELAAC 197
Query: 185 RQRGTVEEYITAFEYLTAQIPRLPEKQFLG 214
R+ TV++Y F L + L E Q LG
Sbjct: 198 RRTTTVDDYAERFLDLLTRTGYLSEDQQLG 227
>ref|XP_470218.1| Putative retroelement [Oryza sativa] gi|15451608|gb|AAK98732.1|
Putative retroelement [Oryza sativa]
Length = 1923
Score = 869 bits (2246), Expect = 0.0
Identities = 448/983 (45%), Positives = 627/983 (63%), Gaps = 11/983 (1%)
Query: 565 VQLEKDNKGVTGVQQAELDMILERHSVVFQAPKGLPPKRNKQHAITLKEGEGPVNVRPYR 624
+Q++K ++ V + +L+R VFQ P +PP RN H I L EG PVN+RPYR
Sbjct: 23 LQIQKTDQTSDVVIPDSIKHVLDRFQEVFQEPTEMPPVRNCDHKIPLMEGASPVNLRPYR 82
Query: 625 YPHHQKNEIENQVKELLEGGVIRHSTSSFSSPVILVKKKDHSWRMCVDYRALNKATIPDK 684
+ K+EIE QV E+L+ GVI++S S+FSSP +LVKKKD +WR+C+DY+ LN TI K
Sbjct: 83 HTPALKDEIERQVTEMLQSGVIQNSNSAFSSPALLVKKKDGTWRLCIDYKHLNAITIKGK 142
Query: 685 FPIPIIEELLDELHGARYFSKLDLKSGYHQVRVKEEDVHKTAFRTHEGHYEFLVMPFGLM 744
+P+P+I+ELLDEL GA+YFSKLDL++GYHQ+R++ + HKTAF+TH GHYE+ VM FGL
Sbjct: 143 YPLPVIDELLDELSGAKYFSKLDLRAGYHQIRLQPGEEHKTAFQTHSGHYEYRVMSFGLT 202
Query: 745 NAPSTFQSLMNDIFRHLLRKRVLVFFDDILVYSKDWPSHLEHLQEVLGILREQGLVANRK 804
AP+TFQ MND +LRK LVFFDDIL+YS D PSH++HL++VL +L+ Q
Sbjct: 203 GAPATFQKAMNDTLATVLRKFTLVFFDDILIYSPDLPSHIQHLEQVLQLLQAQQWKVKLS 262
Query: 805 KCLFGREKVEYLGHMISGQGVEVDPSKVESVTSWPTPKNVKGVRGFLGLTGYYRKFIRDY 864
KC F ++++ YLGH+I GV DPSK+ V W P++VK +RGFLGL GYYRKF+R++
Sbjct: 263 KCSFAQQQLAYLGHIIGKDGVTTDPSKIADVLHWKIPQSVKQLRGFLGLAGYYRKFVRNF 322
Query: 865 GKIAKPLTELTKKN-GFEWSEKAQEAFETLKKKLTTSPVLALPDFSKEFTIECDASGVGV 923
G I KPLT+L KK F+W+ + EAF LK+ L ++PVLALPDFSK FT+E DA +G+
Sbjct: 323 GTINKPLTQLLKKGVPFKWTAQMDEAFNALKQALVSAPVLALPDFSKTFTVETDACDMGI 382
Query: 924 GAILMQEKRPIAYFSKALGVRNLSKSAYEKELMALGLAIQHWRPYLLGRHFKVTTDQRSL 983
GA+L Q++ PIA+ SKALG + S YEKE +A+ LA+ WR YL F + TD +L
Sbjct: 383 GAVLSQDRHPIAFVSKALGPKTRGLSTYEKEYLAILLAVDQWRSYLQHDEFVILTDHHNL 442
Query: 984 KELLQQKVVTMEQQNWAAKLLGFDFEISYKPGKLNKGADALSRVN-ETLELRQMGSHVDW 1042
+ Q++ T Q KL+G +++ Y+ G N ADALSR + ET + S
Sbjct: 443 MHITDQRLHTPLQHKAFTKLMGLQYKVCYRRGTSNAAADALSRRDEETNDQLWAVSECQP 502
Query: 1043 LGGKDLKEEVSKDEELQRIIKSVHEKKDSSLGYTYENGILLYEGRLVLPRESPLIHTMLT 1102
L + + DE+ Q+++ + + + G+L Y+G++ + L ++T
Sbjct: 503 LWLTAVVKGYETDEQAQQLLTELALHPTAREHFHLVQGVLRYKGKIWIGHNLSLQQQLVT 562
Query: 1103 EFHTTPQGGHSGFYRTYRRLAANVYWRGMKSAVQDFVKQCDVCQRQKYLASSPGGLLQPL 1162
H +P GGHSGF TY+R+ A W MK +Q +VK C +CQ+ K + GLLQPL
Sbjct: 563 ALHASPIGGHSGFPVTYQRVKALFAWPQMKKMIQQWVKNCTICQQAKPDLAKYPGLLQPL 622
Query: 1163 PIPERIWEDLSMDFITGLPKSKGFEAILVVVDRLSKYAHFIPLKHPYTAKSVAEVFGKEI 1222
PIPE W+ +S+DFI GLPKS+ + ILVVVD+ S+YAHF+PL HP++A VA + K I
Sbjct: 623 PIPEGAWQVVSLDFIEGLPKSERYNCILVVVDKFSRYAHFVPLSHPFSALDVAVSYMKNI 682
Query: 1223 VRLHGVPSSIVSDRDPIFVSNFWRELFKLQGTKLKMSTAYHPESDGQSEVVNRCLETYLR 1282
+LHG+P ++SDRD IF S W LF G L +S+AYHP+SDGQ++ VN+CLE +LR
Sbjct: 683 YKLHGMPKVLISDRDKIFTSKLWEFLFLKSGIALHLSSAYHPQSDGQTKRVNQCLEMFLR 742
Query: 1283 CFIADQPKTWVIWIPWAEYWYNTCFHASTGVTPFEVVYGRPPPTITRWIQGET-RVEAVQ 1341
CF P WV W+ A YWYNTCFH++ TPFEV+YG P + + ET + +
Sbjct: 743 CFTNAAPFKWVTWLHLAGYWYNTCFHSALNKTPFEVLYGHNP--LQLGVTMETCAIPDLA 800
Query: 1342 KELLERDEALRQLRLQLARAQDRMKQFADRKRSDRSFSIGEWVFVKLRAHRQKSVVTRIY 1401
L ER L+ L R Q +MK AD+ RS R F++G+WVF+KL+ + QKSV +R
Sbjct: 801 VWLHERKLMAELLQQHLHRVQQKMKFHADKNRSFREFAVGDWVFLKLQPYVQKSVASRAC 860
Query: 1402 AKLAAKYYGPYPVVARVGAVAYQLKLPPGSKVHPVFHVSLLKKAVGTYHEGE-ELPDLEG 1460
KLA K+YGP+ ++ARVG VAY+L+LP S +HPVFHVS LK A G H+ + LP
Sbjct: 861 HKLAFKFYGPFQILARVGTVAYKLQLPDDSTIHPVFHVSQLKVAHGFKHQVQSRLPKFLK 920
Query: 1461 DGGILIEPTEVLATRTVQLQGQSIKQILIQWKGQQPEEATWEDVDMIKSQFPSFCLEDKA 1520
+ P ++L R ++ +++ Q+L+ W E+ATWED + ++ +FP +A
Sbjct: 921 S---TVYPLQILDQRLIRKGNRTVSQVLVYWSDSVAEDATWEDREDLQQRFPMALAWGQA 977
Query: 1521 RAYGEGIDR--TQGPQQASDAPL 1541
GEG+ + G Q+ + A L
Sbjct: 978 TFQGEGVVKIFPDGEQENNTAEL 1000
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,763,605,683
Number of Sequences: 2540612
Number of extensions: 123886413
Number of successful extensions: 423256
Number of sequences better than 10.0: 35990
Number of HSP's better than 10.0 without gapping: 2795
Number of HSP's successfully gapped in prelim test: 33197
Number of HSP's that attempted gapping in prelim test: 373027
Number of HSP's gapped (non-prelim): 42392
length of query: 1566
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1424
effective length of database: 502,593,490
effective search space: 715693129760
effective search space used: 715693129760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Lotus: description of TM0096b.4