BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0095c.6
(384 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61131.1| unknown [Arabidopsis thaliana] gi|20466724|gb|AAM... 419 e-116
dbj|BAB01902.1| unnamed protein product [Arabidopsis thaliana] 387 e-106
ref|XP_467618.1| RNA recognition motif (RRM)-containing protein-... 374 e-102
emb|CAD41861.2| OSJNBa0041A02.8 [Oryza sativa (japonica cultivar... 104 4e-21
gb|AAM20329.1| putative plastid protein [Arabidopsis thaliana] g... 103 1e-20
ref|NP_910332.1| putative plastid protein [Oryza sativa (japonic... 101 4e-20
gb|AAM66959.1| plastid protein [Arabidopsis thaliana] 99 2e-19
emb|CAB06698.1| plastid protein [Arabidopsis thaliana] gi|253705... 99 2e-19
gb|AAM19941.1| At2g33430/F4P9.20 [Arabidopsis thaliana] gi|24594... 99 2e-19
ref|XP_550517.1| putative DAL1 protein [Oryza sativa (japonica c... 99 2e-19
emb|CAA75116.1| DAL1 protein [Arabidopsis thaliana] gi|2440031|e... 98 5e-19
gb|AAO30077.1| unknown protein [Arabidopsis thaliana] gi|3668082... 94 7e-18
ref|NP_177494.1| RNA recognition motif (RRM)-containing protein ... 89 2e-16
gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thalian... 82 2e-14
ref|XP_472414.1| OJ000126_13.13 [Oryza sativa (japonica cultivar... 81 6e-14
gb|AAM65001.1| DAG protein, putative [Arabidopsis thaliana] 77 7e-13
ref|NP_565646.2| RNA recognition motif (RRM)-containing protein ... 77 7e-13
dbj|BAC42171.1| unknown protein [Arabidopsis thaliana] gi|288275... 77 9e-13
ref|XP_507568.1| PREDICTED OJ1119_D01.18 gene product [Oryza sat... 76 2e-12
ref|NP_910645.1| RNA recognition motif (RRM)-containing protein-... 76 2e-12
>gb|AAM61131.1| unknown [Arabidopsis thaliana] gi|20466724|gb|AAM20679.1| unknown
protein [Arabidopsis thaliana]
gi|25084257|gb|AAN72206.1| unknown protein [Arabidopsis
thaliana] gi|18402803|ref|NP_566672.1| RNA recognition
motif (RRM)-containing protein [Arabidopsis thaliana]
Length = 374
Score = 419 bits (1078), Expect = e-116
Identities = 216/373 (57%), Positives = 276/373 (73%), Gaps = 32/373 (8%)
Query: 27 LPNKSYHSNLPSSSSSSISCNRFFT---------------------IIAAAAATTYPSFT 65
+ + S+ + +SSSS I NRFF ++ +++A + P +
Sbjct: 5 IASTSFFVPISNSSSSHIINNRFFPSFYSPNLNFGTFRKTSLSSSHLVFSSSAISAPPSS 64
Query: 66 PSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFC 125
T N +WMVL+DKPP V SKS ++DYYV+ L V+G+EK+AQ+ +YDAS+DTHFGFC
Sbjct: 65 TVLTRNSYWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFC 124
Query: 126 CDIDEEISSQLASLPGVLSVRPDPDFNSLKKDYSLSSGQAGLSSGLQTRTNMLFPAGNSK 185
C IDE+ S QLASLPGV+S+RP+ D++S KK+Y + S + G+S LF G K
Sbjct: 125 CHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGIGSHK-GVS---------LFDHGTVK 174
Query: 186 HWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDC 245
HW+VR+DKPGV +VTKAQ+VD+ Q+L+KV+ NEKDAQMC+YHVSW+++FGFCC+LDE
Sbjct: 175 HWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQSDFGFCCDLDERS 234
Query: 246 AQDLAGVPGVSSVQPDDNFESENKNYE-DSLSVPNSSEASQEASLRTKKLFVTGLSFYTS 304
A +LAGVPGV +V PD++FES NK+YE DS + S+ ++TKKLF+TGLSFYTS
Sbjct: 235 AVELAGVPGVLAVVPDNSFESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTS 294
Query: 305 EKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGWMIV 364
EKTLRAAFEGFGELV+VK+I+DKISKRSKGYAF+EYTTEEAAG ALKEMNGKIINGWMIV
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIV 354
Query: 365 VDVAKTNPPRFNR 377
VDVAKT P R NR
Sbjct: 355 VDVAKTKPFRQNR 367
>dbj|BAB01902.1| unnamed protein product [Arabidopsis thaliana]
Length = 396
Score = 387 bits (993), Expect = e-106
Identities = 198/353 (56%), Positives = 259/353 (73%), Gaps = 32/353 (9%)
Query: 27 LPNKSYHSNLPSSSSSSISCNRFFT---------------------IIAAAAATTYPSFT 65
+ + S+ + +SSSS I NRFF ++ +++A + P +
Sbjct: 5 IASTSFFVPISNSSSSHIINNRFFPSFYSPNLNFGTFRKTSLSSSHLVFSSSAISAPPSS 64
Query: 66 PSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFC 125
T N +WMVL+DKPP V SKS ++DYYV+ L V+G+EK+AQ+ +YDAS+DTHFGFC
Sbjct: 65 TVLTRNSYWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFC 124
Query: 126 CDIDEEISSQLASLPGVLSVRPDPDFNSLKKDYSLSSGQAGLSSGLQTRTNMLFPAGNSK 185
C IDE+ S QLASLPGV+S+RP+ D++S KK+Y + S + G+S LF G K
Sbjct: 125 CHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGIGSHK-GVS---------LFDHGTVK 174
Query: 186 HWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDC 245
HW+VR+DKPGV +VTKAQ+VD+ Q+L+KV+ NEKDAQMC+YHVSW+++FGFCC+LDE
Sbjct: 175 HWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQSDFGFCCDLDERS 234
Query: 246 AQDLAGVPGVSSVQPDDNFESENKNYE-DSLSVPNSSEASQEASLRTKKLFVTGLSFYTS 304
A +LAGVPGV +V PD++FES NK+YE DS + S+ ++TKKLF+TGLSFYTS
Sbjct: 235 AVELAGVPGVLAVVPDNSFESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTS 294
Query: 305 EKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEMNGKI 357
EKTLRAAFEGFGELV+VK+I+DKISKRSKGYAF+EYTTEEAAG ALKEMNGK+
Sbjct: 295 EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKV 347
>ref|XP_467618.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
(japonica cultivar-group)] gi|46390865|dbj|BAD16369.1|
RNA recognition motif (RRM)-containing protein-like
[Oryza sativa (japonica cultivar-group)]
gi|46390469|dbj|BAD15930.1| RNA recognition motif
(RRM)-containing protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 399
Score = 374 bits (961), Expect = e-102
Identities = 199/368 (54%), Positives = 264/368 (71%), Gaps = 18/368 (4%)
Query: 10 SVNPNRSQVHQLPTNITLPNKSYHSNLPSSSSSSISCNRFFTIIAAAAATTYPSFTPSTT 69
+V+ + S V +++P+ S H+ R F +A+AAA++ P ++
Sbjct: 15 AVSTSTSAVATAAQTVSIPHLSPHTRRRRQ--------RRFLRLASAAASSPPPLPAASA 66
Query: 70 --HNRHWMVLMDKPPL----GVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFG 123
H W+V+M++PP G +S+++ +D+YV TL V+GS++EAQM +YDASWD +
Sbjct: 67 QPHCSRWVVVMERPPAPAGGGEVSRAEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYE 126
Query: 124 FCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDYSLSSG--QAGLSSGLQTRTNMLFPA 181
F C+ID+E S LA +PGVL+V+PD D + + + SG A L + +N +
Sbjct: 127 FSCEIDDEASRDLAKMPGVLAVKPDTDKVDMSEKDNHGSGLSAANLGNFSDAVSNHSSSS 186
Query: 182 GNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCEL 241
G ++ WLVRM+KPGVEVVTKAQ+VD+Y Q L KV+GNEKDAQ+ IYH+SW+ ++GFCC +
Sbjct: 187 GENEFWLVRMEKPGVEVVTKAQMVDHYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHI 246
Query: 242 DEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSVPNSSEASQEASLRTKKLFVTGLSF 301
DE+CA++LA V GV SVQPD NF S+NKNY+ S SSEA+Q A ++TK+LFVTGLSF
Sbjct: 247 DEECAKELADVSGVLSVQPDTNFGSDNKNYKGDDSF-KSSEATQ-AEVKTKRLFVTGLSF 304
Query: 302 YTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEMNGKIINGW 361
YTSEKTLRAAFE FGELV+VK+I+DKISKRSKGYAFIEYTTEEA GAALK MNG+IINGW
Sbjct: 305 YTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQIINGW 364
Query: 362 MIVVDVAK 369
MIVVDVAK
Sbjct: 365 MIVVDVAK 372
>emb|CAD41861.2| OSJNBa0041A02.8 [Oryza sativa (japonica cultivar-group)]
gi|50928485|ref|XP_473770.1| OSJNBa0041A02.8 [Oryza
sativa (japonica cultivar-group)]
Length = 223
Score = 104 bits (260), Expect = 4e-21
Identities = 60/149 (40%), Positives = 88/149 (58%), Gaps = 10/149 (6%)
Query: 146 RPDPDFNSLKKDYSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIV 205
RP+ ++ L+ SGQ G T LFP + +HWL+ MDKPG E TK Q++
Sbjct: 55 RPESSYSPLR------SGQGG--DRAPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMI 106
Query: 206 DYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFE 265
D Y Q L KV+G+E++A+ IY+VS + FGF CE+DE+ + L G+PGV V PD +
Sbjct: 107 DCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVD 166
Query: 266 SENKNYEDSLSVPNSSEASQEASLRTKKL 294
+ENK+Y L V + E Q + R +++
Sbjct: 167 AENKDYGAELFV--NGEIVQRSPERQRRV 193
Score = 89.4 bits (220), Expect = 2e-16
Identities = 42/86 (48%), Positives = 61/86 (70%)
Query: 73 HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
HW+++MDKP +K Q+ID Y++TL V+GSE+EA+ +Y+ S + +FGF C+IDEE
Sbjct: 87 HWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEET 146
Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
S++L LPGVL V PD ++ KDY
Sbjct: 147 SNKLEGLPGVLFVLPDSYVDAENKDY 172
>gb|AAM20329.1| putative plastid protein [Arabidopsis thaliana]
gi|17381078|gb|AAL36351.1| putative plastid protein
[Arabidopsis thaliana] gi|15223247|ref|NP_174536.1|
plastid developmental protein DAG, putative [Arabidopsis
thaliana] gi|12322451|gb|AAG51246.1| plastid protein,
putative; 23108-24430 [Arabidopsis thaliana]
gi|25370553|pir||D86451 probable plastid protein,
23108-24430 [imported] - Arabidopsis thaliana
Length = 229
Score = 103 bits (256), Expect = 1e-20
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 158 YSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
YS + S T LFP + +HWL+ MDKPG E TK Q++D Y Q L K++G
Sbjct: 67 YSPLKSGSNFSDRAPTEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIG 126
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + FGF CE+DE+ + L G+PGV + PD + ENK+Y L V
Sbjct: 127 SEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFV 186
Query: 278 PNSSEASQEASLRTKKL 294
+ E Q R +K+
Sbjct: 187 --NGEIVQRPPERQRKI 201
Score = 88.6 bits (218), Expect = 3e-16
Identities = 41/86 (47%), Positives = 60/86 (69%)
Query: 73 HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
HW+++MDKP +K Q+ID YV+TL ++GSE+EA+ +Y+ S + +FGF C+IDEE
Sbjct: 95 HWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGFGCEIDEET 154
Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
S++L LPGVL + PD + KDY
Sbjct: 155 SNKLEGLPGVLFILPDSYVDQENKDY 180
>ref|NP_910332.1| putative plastid protein [Oryza sativa (japonica cultivar-group)]
gi|24413962|dbj|BAC22214.1| putative plastid protein
[Oryza sativa (japonica cultivar-group)]
Length = 227
Score = 101 bits (251), Expect = 4e-20
Identities = 57/137 (41%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 160 LSSGQAGLSSGLQTRTNM--LFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
+ SG G G + T M LFP + +HWL+ MDKPG E TK Q++D Y Q L KV+G
Sbjct: 66 MRSGGGGGGGGDRAPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLG 125
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + FGF CE+DE+ + L G+PGV V PD + E K+Y L V
Sbjct: 126 SEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFV 185
Query: 278 PNSSEASQEASLRTKKL 294
+ E Q + R +++
Sbjct: 186 --NGEIVQRSPERQRRV 200
Score = 88.2 bits (217), Expect = 4e-16
Identities = 42/86 (48%), Positives = 60/86 (68%)
Query: 73 HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
HW+++MDKP +K Q+ID Y++TL V+GSE+EA+ +Y+ S + +FGF C+IDEE
Sbjct: 94 HWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEET 153
Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
S++L LPGVL V PD + KDY
Sbjct: 154 SNKLEGLPGVLFVLPDSYVDPEYKDY 179
>gb|AAM66959.1| plastid protein [Arabidopsis thaliana]
Length = 219
Score = 99.4 bits (246), Expect = 2e-19
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 158 YSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
YS + + S T LFP + +HWL+ MDKPG E TK Q++D Y Q L KV+G
Sbjct: 58 YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVG 117
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + GF CE+DE+ + L G+PGV V PD + ENK+Y L V
Sbjct: 118 SEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFV 177
Query: 278 PNSSEASQEASLRTKKL 294
+ E Q + R +++
Sbjct: 178 --NGEIVQRSPERQRRV 192
Score = 87.0 bits (214), Expect = 9e-16
Identities = 58/166 (34%), Positives = 86/166 (50%), Gaps = 25/166 (15%)
Query: 15 RSQVHQLPTNITLPNKSYHSNLPSS---SSSSISCN-RFFTIIAAA--AATTYPSFTPST 68
R L +N+TL +PSS S + C+ RFF+I A + +TY +
Sbjct: 9 RHLTRALLSNVTLMAPP---RIPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGS 65
Query: 69 THN----------------RHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMC 112
+ HW+++MDKP +K Q+ID Y++TL V+GSE+EA+
Sbjct: 66 NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKR 125
Query: 113 LYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDY 158
+Y+ S + + GF C+IDEE S++L LPGVL V PD + KDY
Sbjct: 126 IYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDY 171
>emb|CAB06698.1| plastid protein [Arabidopsis thaliana] gi|25370552|pir||T52623 DAG
protein homolog [imported] - Arabidopsis thaliana
Length = 198
Score = 99.4 bits (246), Expect = 2e-19
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 158 YSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
YS + + S T LFP + +HWL+ MDKPG E TK Q++D Y Q L KV+G
Sbjct: 37 YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVG 96
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + GF CE+DE+ + L G+PGV V PD + ENK+Y L V
Sbjct: 97 SEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFV 156
Query: 278 PNSSEASQEASLRTKKL 294
+ E Q + R +++
Sbjct: 157 --NGEIVQRSPERQRRV 171
Score = 86.7 bits (213), Expect = 1e-15
Identities = 53/145 (36%), Positives = 79/145 (53%), Gaps = 22/145 (15%)
Query: 36 LPSS---SSSSISCN-RFFTIIAAA--AATTYPSFTPSTTHN----------------RH 73
+PSS S + C+ RFF+I A + +TY + + H
Sbjct: 6 IPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGSNFSDRPPTEMAPLFPGCDYEH 65
Query: 74 WMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEIS 133
W+++MDKP +K Q+ID Y++TL V+GSE+EA+ +Y+ S + + GF C+IDEE S
Sbjct: 66 WLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGFGCEIDEETS 125
Query: 134 SQLASLPGVLSVRPDPDFNSLKKDY 158
++L LPGVL V PD + KDY
Sbjct: 126 TKLEGLPGVLFVLPDSYVDPENKDY 150
>gb|AAM19941.1| At2g33430/F4P9.20 [Arabidopsis thaliana] gi|2459425|gb|AAB80660.1|
plastid protein [Arabidopsis thaliana]
gi|17933285|gb|AAL48226.1| At2g33430/F4P9.20
[Arabidopsis thaliana] gi|15226108|ref|NP_180901.1|
plastid developmental protein DAG, putative [Arabidopsis
thaliana] gi|25370551|pir||D84745 plastid protein
[imported] - Arabidopsis thaliana
Length = 219
Score = 99.4 bits (246), Expect = 2e-19
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 158 YSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
YS + + S T LFP + +HWL+ MDKPG E TK Q++D Y Q L KV+G
Sbjct: 58 YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVG 117
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + GF CE+DE+ + L G+PGV V PD + ENK+Y L V
Sbjct: 118 SEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFV 177
Query: 278 PNSSEASQEASLRTKKL 294
+ E Q + R +++
Sbjct: 178 --NGEIVQRSPERQRRV 192
Score = 87.0 bits (214), Expect = 9e-16
Identities = 58/166 (34%), Positives = 86/166 (50%), Gaps = 25/166 (15%)
Query: 15 RSQVHQLPTNITLPNKSYHSNLPSS---SSSSISCN-RFFTIIAAA--AATTYPSFTPST 68
R L +N+TL +PSS S + C+ RFF+I A + +TY +
Sbjct: 9 RHLTRALLSNVTLMAPP---RIPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGS 65
Query: 69 THN----------------RHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMC 112
+ HW+++MDKP +K Q+ID Y++TL V+GSE+EA+
Sbjct: 66 NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKR 125
Query: 113 LYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDY 158
+Y+ S + + GF C+IDEE S++L LPGVL V PD + KDY
Sbjct: 126 IYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDY 171
>ref|XP_550517.1| putative DAL1 protein [Oryza sativa (japonica cultivar-group)]
gi|55296199|dbj|BAD67917.1| putative DAL1 protein [Oryza
sativa (japonica cultivar-group)]
Length = 165
Score = 99.0 bits (245), Expect = 2e-19
Identities = 54/128 (42%), Positives = 77/128 (59%), Gaps = 2/128 (1%)
Query: 167 LSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCI 226
LS T LFP + +HWL+ MDKPG E TK Q++D Y Q L KV+G+E++A+ I
Sbjct: 13 LSRRAPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKI 72
Query: 227 YHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSVPNSSEASQE 286
Y+VS + FGF CE+DE+ + L G+PGV V PD + E K+Y L V + E Q
Sbjct: 73 YNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFV--NGEIVQR 130
Query: 287 ASLRTKKL 294
+ R +++
Sbjct: 131 SPERQRRV 138
Score = 88.2 bits (217), Expect = 4e-16
Identities = 42/86 (48%), Positives = 60/86 (68%)
Query: 73 HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
HW+++MDKP +K Q+ID Y++TL V+GSE+EA+ +Y+ S + +FGF C+IDEE
Sbjct: 32 HWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEET 91
Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
S++L LPGVL V PD + KDY
Sbjct: 92 SNKLEGLPGVLFVLPDSYVDPEYKDY 117
>emb|CAA75116.1| DAL1 protein [Arabidopsis thaliana] gi|2440031|emb|CAA75115.1| DAL1
protein [Arabidopsis thaliana]
Length = 219
Score = 97.8 bits (242), Expect = 5e-19
Identities = 54/137 (39%), Positives = 80/137 (57%), Gaps = 2/137 (1%)
Query: 158 YSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
YS + + S T LFP + +HWL+ MDKPG E TK +++D Y Q L KV+G
Sbjct: 58 YSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKHEMIDCYIQTLAKVVG 117
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + GF CE+DE+ + L G+PGV V PD + ENK+Y L V
Sbjct: 118 SEEEAKKRIYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFV 177
Query: 278 PNSSEASQEASLRTKKL 294
+ E Q + R +++
Sbjct: 178 --NGEIVQRSPERQRRV 192
Score = 85.5 bits (210), Expect = 2e-15
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 25/166 (15%)
Query: 15 RSQVHQLPTNITLPNKSYHSNLPSS---SSSSISCN-RFFTIIAAA--AATTYPSFTPST 68
R L +N+TL +PSS S + C+ RFF+I A + +TY +
Sbjct: 9 RHLTRALLSNVTLMAPP---RIPSSVHYGGSRLGCSTRFFSIRCGANRSGSTYSPLNSGS 65
Query: 69 THN----------------RHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMC 112
+ HW+++MDKP +K ++ID Y++TL V+GSE+EA+
Sbjct: 66 NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKHEMIDCYIQTLAKVVGSEEEAKKR 125
Query: 113 LYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDY 158
+Y+ S + + GF C+IDEE S++L LPGVL V PD + KDY
Sbjct: 126 IYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDY 171
>gb|AAO30077.1| unknown protein [Arabidopsis thaliana] gi|3668082|gb|AAC61814.1|
unknown protein [Arabidopsis thaliana]
gi|18253009|gb|AAL62431.1| unknown protein [Arabidopsis
thaliana] gi|15226934|ref|NP_181067.1| plastid
developmental protein DAG, putative [Arabidopsis
thaliana] gi|25370550|pir||B84766 hypothetical protein
At2g35240 [imported] - Arabidopsis thaliana
Length = 232
Score = 94.0 bits (232), Expect = 7e-18
Identities = 49/120 (40%), Positives = 70/120 (57%)
Query: 158 YSLSSGQAGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMG 217
YS + S T LFP + +HWL+ M+KPG E K Q++D Y Q L K++G
Sbjct: 70 YSPLKSGSNFSDRPPTEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVG 129
Query: 218 NEKDAQMCIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNYEDSLSV 277
+E++A+ IY+VS + FGF CE+DE+ + L G+PGV V PD + E K+Y L V
Sbjct: 130 SEEEARKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFV 189
Score = 85.5 bits (210), Expect = 2e-15
Identities = 41/86 (47%), Positives = 59/86 (67%)
Query: 73 HWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEI 132
HW+++M+KP K Q+ID YV+TL ++GSE+EA+ +Y+ S + +FGF C+IDEE
Sbjct: 98 HWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCERYFGFGCEIDEET 157
Query: 133 SSQLASLPGVLSVRPDPDFNSLKKDY 158
S++L LPGVL V PD + KDY
Sbjct: 158 SNKLEGLPGVLFVLPDSYVDPEFKDY 183
>ref|NP_177494.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana] gi|25406274|pir||A96762 probable RNA-binding
glycine-rich protein T9L24.48 [imported] - Arabidopsis
thaliana gi|11120799|gb|AAG30979.1| RNA-binding
glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis
thaliana]
Length = 181
Score = 89.0 bits (219), Expect = 2e-16
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 275 LSVPNSSEASQEASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKG 334
LS +SS +S KL+V+GLSF T+E TLR FE FG L+ + +++DK++ R KG
Sbjct: 60 LSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKG 119
Query: 335 YAFIEYTTEEAAGAALKEMNGKIINGWMIVVDVAKTNPPRFNRGHARP 382
+AF+ Y TEE A A++ M+GK ++G +I V+ AKT R + A+P
Sbjct: 120 FAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKT---RSDMSRAKP 164
>gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|25408558|pir||F84793 probable
RNA-binding protein [imported] - Arabidopsis thaliana
gi|15224298|ref|NP_181287.1| RNA-binding protein,
putative [Arabidopsis thaliana]
Length = 142
Score = 82.4 bits (202), Expect = 2e-14
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 287 ASLRTKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAA 346
++L + +LFV+GLS T+ + L+ AF FG+LV +VI D+ S RSKG+ F+ Y T E A
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDA 88
Query: 347 GAALKEMNGKIINGWMIVVDVAKTNPPR 374
A EMN K ++GW+I VD A+ PR
Sbjct: 89 EKAKAEMNAKFLDGWVIFVDPARPREPR 116
>ref|XP_472414.1| OJ000126_13.13 [Oryza sativa (japonica cultivar-group)]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa
(japonica cultivar-group)] gi|38344030|emb|CAE01512.2|
OJ991214_12.1 [Oryza sativa (japonica cultivar-group)]
Length = 137
Score = 80.9 bits (198), Expect = 6e-14
Identities = 35/84 (41%), Positives = 59/84 (69%)
Query: 291 TKKLFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAAL 350
T +LF+ GLS + +E +L AF +G++++ ++ DK++ R KG+ F+++ +EEAA A
Sbjct: 36 TYRLFIGGLSQFATEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAK 95
Query: 351 KEMNGKIINGWMIVVDVAKTNPPR 374
+EMNGK++NG +I VD+AK R
Sbjct: 96 EEMNGKVLNGRVIYVDIAKAKMNR 119
>gb|AAM65001.1| DAG protein, putative [Arabidopsis thaliana]
Length = 232
Score = 77.4 bits (189), Expect = 7e-13
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 39 SSSSSISCNRFFTIIAAAAATTYPSFTPSTTHNR-----------HWMVLMDKPPLGVIS 87
S S++ S R + AA + Y S ++ R HW+++M+ P S
Sbjct: 44 SISTAGSRRRVAIVKAATVDSDYSSKRSNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPS 103
Query: 88 KSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRP 147
+ Q+ID Y+ TL TV+GS +EA+ +Y S T+ GF C IDEE S + LPGVL V P
Sbjct: 104 RDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLP 163
Query: 148 DPDFNSLKKDY 158
D + KDY
Sbjct: 164 DSYIDVKNKDY 174
Score = 68.9 bits (167), Expect = 2e-10
Identities = 33/104 (31%), Positives = 58/104 (55%)
Query: 168 SSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIY 227
S+ + R ++ P + HWL+ M+ P ++ Q++D Y L V+G+ ++A+ +Y
Sbjct: 71 SNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMY 130
Query: 228 HVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNY 271
S T GF C +DE+ ++ G+PGV V PD + +NK+Y
Sbjct: 131 AFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDY 174
>ref|NP_565646.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 116
Score = 77.4 bits (189), Expect = 7e-13
Identities = 37/90 (41%), Positives = 63/90 (69%), Gaps = 3/90 (3%)
Query: 294 LFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEM 353
LFV G+SF ++E+TL AF +G++++V VI+DKI R KG+A++ ++++E A AL E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 354 NGKIINGWMIVVD---VAKTNPPRFNRGHA 380
N ++++G ++++D AK NPP HA
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTKPNHA 112
>dbj|BAC42171.1| unknown protein [Arabidopsis thaliana] gi|28827520|gb|AAO50604.1|
putative DAG protein [Arabidopsis thaliana]
gi|15220382|ref|NP_172610.1| plastid developmental
protein DAG, putative [Arabidopsis thaliana]
gi|6554182|gb|AAF16628.1| T23J18.10 [Arabidopsis
thaliana]
Length = 232
Score = 77.0 bits (188), Expect = 9e-13
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 66 PSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGSEKEAQMCLYDASWDTHFGFC 125
P +N HW+++M+ P S+ Q+ID Y+ TL TV+GS +EA+ +Y S T+ GF
Sbjct: 83 PGCDYN-HWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQ 141
Query: 126 CDIDEEISSQLASLPGVLSVRPDPDFNSLKKDY 158
C IDEE S + LPGVL V PD + KDY
Sbjct: 142 CTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDY 174
Score = 68.9 bits (167), Expect = 2e-10
Identities = 33/104 (31%), Positives = 58/104 (55%)
Query: 168 SSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQMCIY 227
S+ + R ++ P + HWL+ M+ P ++ Q++D Y L V+G+ ++A+ +Y
Sbjct: 71 SNSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMY 130
Query: 228 HVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNY 271
S T GF C +DE+ ++ G+PGV V PD + +NK+Y
Sbjct: 131 AFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDY 174
>ref|XP_507568.1| PREDICTED OJ1119_D01.18 gene product [Oryza sativa (japonica
cultivar-group)] gi|51964686|ref|XP_507127.1| PREDICTED
OJ1119_D01.18 gene product [Oryza sativa (japonica
cultivar-group)] gi|50940961|ref|XP_480008.1| putative
DAG protein [Oryza sativa (japonica cultivar-group)]
gi|38636775|dbj|BAD03018.1| putative DAG protein [Oryza
sativa (japonica cultivar-group)]
Length = 229
Score = 76.3 bits (186), Expect = 2e-12
Identities = 44/113 (38%), Positives = 63/113 (54%), Gaps = 7/113 (6%)
Query: 52 IIAAAAATTYPS------FTPSTTHNRHWMVLMDKPPLGVISKSQVIDYYVKTLQTVMGS 105
++AAAA S P +N HW+++M+ P ++ Q+ID Y+ TL TV+GS
Sbjct: 59 VVAAAAGAGTGSEQRETILLPGCDYN-HWLIVMEFPKDPAPTREQMIDTYLNTLATVLGS 117
Query: 106 EKEAQMCLYDASWDTHFGFCCDIDEEISSQLASLPGVLSVRPDPDFNSLKKDY 158
+EA+ +Y S T+ GF C +DEE S + LPGVL V PD + KDY
Sbjct: 118 MEEAKKNMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDY 170
Score = 75.9 bits (185), Expect = 2e-12
Identities = 37/107 (34%), Positives = 60/107 (55%)
Query: 165 AGLSSGLQTRTNMLFPAGNSKHWLVRMDKPGVEVVTKAQIVDYYAQILTKVMGNEKDAQM 224
AG +G + R +L P + HWL+ M+ P T+ Q++D Y L V+G+ ++A+
Sbjct: 64 AGAGTGSEQRETILLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKK 123
Query: 225 CIYHVSWKTNFGFCCELDEDCAQDLAGVPGVSSVQPDDNFESENKNY 271
+Y S T GF C +DE+ ++ G+PGV V PD + +NK+Y
Sbjct: 124 NMYAFSTTTYTGFQCTVDEETSEKFKGLPGVLWVLPDSYIDVKNKDY 170
>ref|NP_910645.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
(japonica cultivar-group)] gi|28564803|dbj|BAC57733.1|
RNA recognition motif (RRM)-containing protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 133
Score = 75.9 bits (185), Expect = 2e-12
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 294 LFVTGLSFYTSEKTLRAAFEGFGELVQVKVIIDKISKRSKGYAFIEYTTEEAAGAALKEM 353
LFV+GL+ T+ LR AF FG++++ +VI D+IS S+G+ F++Y T E AG +K M
Sbjct: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
Query: 354 NGKIINGWMIVVDVAK 369
+GK ++GW+I + AK
Sbjct: 97 DGKFLDGWVIFAEYAK 112
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,577,687
Number of Sequences: 2540612
Number of extensions: 26856632
Number of successful extensions: 81053
Number of sequences better than 10.0: 4377
Number of HSP's better than 10.0 without gapping: 3273
Number of HSP's successfully gapped in prelim test: 1104
Number of HSP's that attempted gapping in prelim test: 73807
Number of HSP's gapped (non-prelim): 7230
length of query: 384
length of database: 863,360,394
effective HSP length: 130
effective length of query: 254
effective length of database: 533,080,834
effective search space: 135402531836
effective search space used: 135402531836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0095c.6