BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0083.15
(489 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 369 e-100
dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|983838... 357 6e-97
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris] 357 6e-97
ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cu... 338 2e-91
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi... 337 7e-91
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 336 1e-90
ref|NP_909547.1| putative polyprotein [Oryza sativa (japonica cu... 334 3e-90
emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa (japonica cultiva... 333 7e-90
ref|XP_474120.1| OSJNBa0010D21.11 [Oryza sativa (japonica cultiv... 332 2e-89
emb|CAE04098.3| OSJNBa0096F01.7 [Oryza sativa (japonica cultivar... 331 4e-89
gb|AAQ56480.1| putative polyprotein [Oryza sativa (japonica cult... 331 4e-89
gb|AAQ56433.1| putative gag-pol precursor [Oryza sativa (japonic... 331 4e-89
ref|NP_917378.1| P0445H04.33 [Oryza sativa (japonica cultivar-gr... 330 5e-89
gb|AAT77305.1| putative polyprotein [Oryza sativa (japonica cult... 330 5e-89
ref|NP_914621.1| putative polyprotein [Oryza sativa (japonica cu... 330 6e-89
gb|AAP53392.1| putative polyprotein [Oryza sativa (japonica cult... 330 8e-89
gb|AAX95184.1| retrotransposon protein, putative, unclassified [... 330 8e-89
emb|CAE06012.3| OSJNBa0016O02.22 [Oryza sativa (japonica cultiva... 330 8e-89
gb|AAK55777.1| Putative polyprotein [Oryza sativa] 330 8e-89
gb|AAX96661.1| retrotransposon protein, putative, unclassified [... 330 8e-89
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 369 bits (947), Expect = e-100
Identities = 181/400 (45%), Positives = 251/400 (62%)
Query: 90 SGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGH 149
+G LP + +A K+ +A+ +T++ L+KR F+ P L+CL A YVLAE+HEG G+
Sbjct: 627 TGTLPGDPKQAHKVRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGN 686
Query: 150 HLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQ 209
H GGRSLA + GYYWPT++K+AA +VK+CD CQR+A + H P L S+ PWPF Q
Sbjct: 687 HSGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQ 746
Query: 210 WGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGV 269
WGMD++ P TAP K+L+VA DY++KW+EAE A+ V +F +KN+I RFG+P
Sbjct: 747 WGMDIVRPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806
Query: 270 LITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGD 329
+I DNG QF S FR+ L+I+ +++ +PQ+NGQAE+ N+ ++ L+KRL AKG
Sbjct: 807 IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866
Query: 330 WAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGE 389
W E+L VLWAYRTTP TG +P+ L +G +AVIP EI P+ T + + LG
Sbjct: 867 WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWTNAAKQSDANMQLGR 926
Query: 390 DLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAA 449
+LD E R A+ R +Q A+ YN+KV RS G LVL+ GK A
Sbjct: 927 NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGKFQA 986
Query: 450 KWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
WEGPY V +A+ GAY L+ L G + R WN +NL++YY
Sbjct: 987 NWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>dbj|BAA99310.1| orf764 [Beta vulgaris subsp. vulgaris] gi|9838386|ref|NP_063998.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 357 bits (915), Expect = 6e-97
Identities = 177/406 (43%), Positives = 252/406 (61%)
Query: 84 VQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIH 143
+Q L+G LP+++ AK + R + WY I L+KR S PLL+C ++ + E
Sbjct: 358 IQEYKLTGKLPDDQTIAKAVKRDSHWYIIYQGQLYKRSDSYPLLRCTSESEKLPAMEEAP 417
Query: 144 EGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVS 203
EG CG+H+GG++L+ +V+R G YWPT+ KD +VK+CD CQ+ A + + P L +++
Sbjct: 418 EGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCDKCQKFAPVMNQPANDLCPILN 477
Query: 204 PWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRR 263
P PF QWGMD+LGPF TA G KYL+VAVDY+TKWIEAEP I + +V+ F +KN+I R
Sbjct: 478 PIPFAQWGMDILGPFTTASGGRKYLIVAVDYFTKWIEAEPTKFIKARQVRSFIWKNIITR 537
Query: 264 FGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRL 323
FG+P ++ D+GTQF +D IK +V HPQ+NGQAE+AN+ IL L+K+L
Sbjct: 538 FGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANKQILLALQKKL 597
Query: 324 GDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQN 383
+ KG WA+ + VLWA RTT TG+SP+ L FG EAV+P E+ PS R +D N
Sbjct: 598 EEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVN 657
Query: 384 DQLLGEDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTE 443
+QL+ E LD L E R A + K + YN++V R GDLVL+ + +
Sbjct: 658 EQLMREALDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKGNV 717
Query: 444 RGKLAAKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
GK A WEGPY++ E G+YKL T+ G+ + ++NA L++Y+
Sbjct: 718 HGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLKNSFNADVLKKYF 763
>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
Length = 764
Score = 357 bits (915), Expect = 6e-97
Identities = 177/406 (43%), Positives = 252/406 (61%)
Query: 84 VQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIH 143
+Q L+G LP+++ AK + R + WY I L+KR S PLL+C ++ + E
Sbjct: 358 IQEYKLTGKLPDDQTIAKAVKRDSHWYIIYQGQLYKRSDSYPLLRCTSESEKLPAMEEAP 417
Query: 144 EGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVS 203
EG CG+H+GG++L+ +V+R G YWPT+ KD +VK+CD CQ+ A + + P L +++
Sbjct: 418 EGICGNHIGGKALSHEVMRRGNYWPTMVKDCLRYVKKCDKCQKFAPVMNQPANDLCPILN 477
Query: 204 PWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRR 263
P PF QWGMD+LGPF TA G KYL+VAVDY+TKWIEAEP I + +V+ F +KN+I R
Sbjct: 478 PIPFAQWGMDILGPFTTASGGRKYLIVAVDYFTKWIEAEPTKFIKARQVRSFIWKNIITR 537
Query: 264 FGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRL 323
FG+P ++ D+GTQF +D IK +V HPQ+NGQAE+AN+ IL L+K+L
Sbjct: 538 FGIPQCIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANKQILLALQKKL 597
Query: 324 GDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQN 383
+ KG WA+ + VLWA RTT TG+SP+ L FG EAV+P E+ PS R +D N
Sbjct: 598 EEHKGLWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVN 657
Query: 384 DQLLGEDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTE 443
+QL+ E LD L E R A + K + YN++V R GDLVL+ + +
Sbjct: 658 EQLMREALDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKGNV 717
Query: 444 RGKLAAKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
GK A WEGPY++ E G+YKL T+ G+ + ++NA L++Y+
Sbjct: 718 HGKFTANWEGPYQICEQVAPGSYKLMTVEGEPLKNSFNADVLKKYF 763
>ref|XP_476195.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46981243|gb|AAT07561.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1459
Score = 338 bits (867), Expect = 2e-91
Identities = 171/402 (42%), Positives = 249/402 (61%), Gaps = 6/402 (1%)
Query: 89 LSGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCG 148
+S LPE++ EA+++ A Y +++ L+K G + PLLKC+ K+ ++ EIHEG CG
Sbjct: 1062 VSNKLPEKEEEARRVQLMARKYKVIDGQLYKSGVTAPLLKCVTKEEGMQMVVEIHEGICG 1121
Query: 149 HHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFH 208
H RS+A KV+R G YWPT+ KD ++K C CQ+ APP L + WPF+
Sbjct: 1122 AHQAPRSVASKVIRQGIYWPTIMKDTEQYIKTCRACQKVGSSSKAPPKELQPIPPVWPFY 1181
Query: 209 QWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPG 268
+WG+D++GP A G L++++VA++Y+++WIEAE +A ITSA +Q+F +KN+I RFG+P
Sbjct: 1182 RWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVARITSAAMQKFVWKNIICRFGIPK 1241
Query: 269 VLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRL-GDAK 327
++ DNG QF S+ F+DL GLH+K F SV HPQTNG E AN ++ ++KRL G +K
Sbjct: 1242 EIVCDNGKQFESEKFKDLCQGLHLKINFASVGHPQTNGAVERANGKVVEAIKKRLEGSSK 1301
Query: 328 GDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLL 387
G W E L VLWA RTT TG +P+RL +G E + P+E+ S R + +++Q
Sbjct: 1302 GKWPEDLLSVLWALRTTVVWATGMTPFRLVYGDEPMTPSEVGVNSPRVIFY--QEDEQGR 1359
Query: 388 GEDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKL 447
L++L E R A + + +YNKKV R+ GDLVL+ GKL
Sbjct: 1360 KVSLEMLDEIRVEALQKMEAYTEGTRKQYNKKVRPRNIEEGDLVLKKV---LNEVAVGKL 1416
Query: 448 AAKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
+KWEGP+ V + GAYKL L G+E+ TWNA +L+++Y
Sbjct: 1417 ESKWEGPFIVRKKMEIGAYKLAHLDGEELNHTWNAISLKKFY 1458
>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411637|pir||F84528 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1787
Score = 337 bits (863), Expect = 7e-91
Identities = 175/399 (43%), Positives = 244/399 (60%), Gaps = 3/399 (0%)
Query: 93 LPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLG 152
+P++K A++L R++ YT+ ++ L + + LL CL + A V+ EIHEG+ G+H G
Sbjct: 1389 VPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEEAQQVMREIHEGAGGNHSG 1448
Query: 153 GRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQWGM 212
GR+LA K+ + G YWPT+ D V +C+ CQ HA H P L + + P+PF +W M
Sbjct: 1449 GRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPSEVLQTAMPPYPFMRWAM 1508
Query: 213 DLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGVLIT 272
D++ PF + KY++V DY+TKW EAE A I S VQ F +KN+I G+P ++T
Sbjct: 1509 DIIRPFPASRQ-KKYILVMTDYFTKWFEAESYARIQSKEVQNFVWKNIICHHGLPYEIVT 1567
Query: 273 DNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRLGDAKGDWAE 332
DNGTQFTS F I+ ++ +PQ NGQAE+ N+ IL GL+KRL + KG WA+
Sbjct: 1568 DNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGAWAD 1627
Query: 333 QLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGF--DLNQNDQLLGED 390
+LD VLW+YRTTP +T +P+ LT+G EA+ P E P+ R + D NDQ+L ++
Sbjct: 1628 ELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDN 1687
Query: 391 LDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAK 450
LD L E+R A R +Q AA YNKKV R FA GDLVL+ + GKL A
Sbjct: 1688 LDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAH 1747
Query: 451 WEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
WEGPY + + G Y+L T+ G IPR+WN+ NL+RYY
Sbjct: 1748 WEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 336 bits (861), Expect = 1e-90
Identities = 173/403 (42%), Positives = 249/403 (60%), Gaps = 8/403 (1%)
Query: 89 LSGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCG 148
+S LPE++ EAK++ + Y +V L+K G + PLLKC+ ++ ++ EIHEG CG
Sbjct: 1604 VSAQLPEKEEEAKRIQLMSKKYKVVEGQLYKSGVTAPLLKCVTREEGMKMVVEIHEGLCG 1663
Query: 149 HHLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFH 208
H S+A KV+R G YWPT+ KD ++K C CQ+ + APP L + WPF+
Sbjct: 1664 AHQAPWSVASKVIRQGIYWPTIMKDTEKYIKTCKACQKFGPMTKAPPKELQPIPPVWPFY 1723
Query: 209 QWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPG 268
+WG+D++GP A G L++++VA++Y+++WIEAE +A ITSA VQ+F +KN+I RFG+P
Sbjct: 1724 RWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVARITSAAVQKFVWKNIICRFGIPK 1783
Query: 269 VLITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRL-GDAK 327
++ DNG QF S F+D+ GL+++ F SV HPQTNG E AN I+ ++KRL G AK
Sbjct: 1784 EIVCDNGKQFESGKFQDMCKGLNLQINFASVGHPQTNGVVERANGKIMEAIKKRLEGSAK 1843
Query: 328 GDWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLL 387
G W E L VLWA RTT +TG +P+RL +G EA+ P+E+ S R +Q D+
Sbjct: 1844 GKWPEDLLSVLWALRTTVVRSTGMTPFRLVYGDEAMTPSEVGAHSPRMI---FDQKDEEG 1900
Query: 388 GE-DLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGK 446
E L++L E R A + + YN+KV R GDLVL+ GK
Sbjct: 1901 REITLEMLDEIRVEALEKMASYTEGTKSYYNQKVKTRPIEEGDLVLKKV---LNEVAVGK 1957
Query: 447 LAAKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
L +KWEGP+ V + T TGA+KL L G+E+ TWNA +L+++Y
Sbjct: 1958 LESKWEGPFIVKKKTETGAFKLAYLDGEELKHTWNAVSLKKFY 2000
>ref|NP_909547.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27764667|gb|AAO23092.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 658
Score = 334 bits (857), Expect = 3e-90
Identities = 175/401 (43%), Positives = 243/401 (59%), Gaps = 7/401 (1%)
Query: 90 SGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGH 149
+GWLP+++AEAK+L RA+ Y +V+ L++ G PLL+C++ + EIH+G CG
Sbjct: 263 AGWLPDDEAEAKRLQIRATKYKLVSGQLYRSGTLQPLLRCISFAEGEEMAREIHQGLCGA 322
Query: 150 HLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQ 209
H R++A KV R G YWPT+ K A+ +K+C+ CQRH AP L + WPF +
Sbjct: 323 HQAARTVASKVFREGVYWPTVLKVCAEQIKKCESCQRHGRSQSAPHYNLQPIAPIWPFAR 382
Query: 210 WGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGV 269
WG+D++GPF A K+++VA++Y+++WIEAEPL ITSA VQ+F +KN+I RFGVP
Sbjct: 383 WGLDIIGPFSVARNGYKFVIVAIEYFSRWIEAEPLGAITSAAVQKFVWKNIICRFGVPKE 442
Query: 270 LITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRL-GDAKG 328
ITDNG QF S FR++ +GL+++ RF SV HPQ+NG AE N IL L+KRL G AKG
Sbjct: 443 FITDNGKQFDSDKFREMCEGLNLEIRFASVAHPQSNGAAERTNGKILEALKKRLEGAAKG 502
Query: 329 DWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLG 388
W E+L VLWA RTTP T SP+ L +G EA+ PAE+ S R + ++
Sbjct: 503 KWPEELLSVLWALRTTPTRPTKFSPFMLLYGDEAMTPAELGANSPRVMFSGGEEGHEV-- 560
Query: 389 EDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLA 448
L+LL R A + YNKKV G L+L+ A GKL
Sbjct: 561 -SLELLEGVRVEALEHMHKYATSTSATYNKKVRPTELMPGHLILRKK---ANLVAVGKLE 616
Query: 449 AKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
+KWEG Y + + TG++ L TL G+E +WNA +L+R+Y
Sbjct: 617 SKWEGQYLIKHKSRTGSFCLATLEGEEFDHSWNAASLKRFY 657
>emb|CAD40172.2| OSJNBa0061A09.11 [Oryza sativa (japonica cultivar-group)]
gi|50921873|ref|XP_471297.1| OSJNBa0061A09.11 [Oryza
sativa (japonica cultivar-group)]
Length = 2030
Score = 333 bits (854), Expect = 7e-90
Identities = 195/496 (39%), Positives = 267/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1544 LRHVPRRDNMMADELSRLASSRAQTPP-GAFEERLAQPSARPDPLGETDAPDRPPRPVGV 1602
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1603 QA--SGPKGSAPSSLRLITWIAEIQAYLTDKTLPEDREGSERVRRISKRYVLVEGTLYRR 1660
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1661 AANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1720
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L ++ WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1721 CRACQFHAKQIHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPE 1780
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1781 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1839
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1840 HPESNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1896
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1897 FFLVYGAEAVLPSELTLKSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1956
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRVV G+ +L+T G
Sbjct: 1957 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVVGVPRPGSIRLDTGDG 2013
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 2014 TELPNPWNIEHLRRFY 2029
>ref|XP_474120.1| OSJNBa0010D21.11 [Oryza sativa (japonica cultivar-group)]
gi|38345498|emb|CAD41709.2| OSJNBa0010D21.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1884
Score = 332 bits (851), Expect = 2e-89
Identities = 195/496 (39%), Positives = 267/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1398 LRHVPRRDNMMVDELSRLASSRAQT-PLGAFEERLAQPSARPDPLGETDAPDRPPRPVGV 1456
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1457 QA--SGPEGSAPSSLRLIAWIAEIQAYLTDKTLPEDREGSERVHRISKRYVLVEGTLYRR 1514
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1515 AANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1574
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L ++ WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1575 CRACQFHAKQIHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPE 1634
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S +
Sbjct: 1635 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFVDYCEDMGIKLCFASPD 1693
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1694 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRETGETP 1750
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1751 FFLVYGAEAVLPSELTLKSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1810
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRVV G+ +L T G
Sbjct: 1811 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVVGVPRPGSIRLATGDG 1867
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 1868 TELPNPWNIEHLRRFY 1883
>emb|CAE04098.3| OSJNBa0096F01.7 [Oryza sativa (japonica cultivar-group)]
Length = 1946
Score = 331 bits (848), Expect = 4e-89
Identities = 195/496 (39%), Positives = 265/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1460 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERLAQPSARPDPLGETDAPDRPPRPVGV 1518
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1519 QA--SGPEGSAPNSLRLIAWIAEIQAYLTDKTLPEDREGSERVHRISKRYVLVEGTLYRR 1576
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1577 AANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1636
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L ++ WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1637 CRACQFHAKQIHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDRFTKWPE 1696
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1697 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1755
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1756 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1812
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1813 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1872
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRVV G+ +L T G
Sbjct: 1873 RYHQRHVRARSLCVNDLVLRRVQTRAGLS---KLSPMWEGPYRVVGVPRPGSIRLATGDG 1929
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 1930 TELPNPWNIEHLRRFY 1945
>gb|AAQ56480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2027
Score = 331 bits (848), Expect = 4e-89
Identities = 194/496 (39%), Positives = 266/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1541 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERITQPSARPDPLGETDAPDRPPRPVGV 1599
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1600 QA--SGPEGSAPSSLRLIAWISEIQAYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRR 1657
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1658 AANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1717
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1718 CRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 1777
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1778 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1836
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1837 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1893
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1894 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDCLEERRRRAALRAARYQQSLR 1953
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V+ RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 1954 RYHQRHVLARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSVRLATGDG 2010
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 2011 TELPNPWNIEHLRRFY 2026
>gb|AAQ56433.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 979
Score = 331 bits (848), Expect = 4e-89
Identities = 194/496 (39%), Positives = 266/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 493 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERITQPSARPDPLGETDAPDRPPRPVGV 551
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 552 QA--SGPEGSAPSSLRLIAWISEIQAYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRR 609
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 610 AANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 669
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 670 CRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 729
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 730 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 788
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 789 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 845
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 846 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDCLEERRRRAALRAARYQQSLR 905
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V+ RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 906 RYHQRHVLARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSVRLATGDG 962
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 963 TELPNPWNIEHLRRFY 978
>ref|NP_917378.1| P0445H04.33 [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 330 bits (847), Expect = 5e-89
Identities = 194/496 (39%), Positives = 265/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1544 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERLTQPSARPDPLGETDAPDRPPRPVGV 1602
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1603 QA--SGPEGSAPSSLRLIAWISEIQAYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRR 1660
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1661 AANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1720
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1721 CRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 1780
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1781 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1839
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1840 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1896
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1897 FFLVYGAEAVLPSELTLRSPRATMYCETDQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1956
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 1957 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSIRLATGDG 2013
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 2014 TELPNPWNIEHLRRFY 2029
>gb|AAT77305.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 986
Score = 330 bits (847), Expect = 5e-89
Identities = 173/401 (43%), Positives = 242/401 (60%), Gaps = 7/401 (1%)
Query: 90 SGWLPEEKAEAKKLVRRASWYTIVNDDLFKRGFSTPLLKCLAKDRAAYVLAEIHEGSCGH 149
+GWLP ++AEAK+L RA+ Y +V+ L++ G PL+ C++ + EIH+G CG
Sbjct: 591 TGWLPVDEAEAKRLQLRATKYKMVSGQLYRSGVLQPLVCCISFAEGEEMAKEIHQGLCGA 650
Query: 150 HLGGRSLARKVLRAGYYWPTLEKDAADHVKQCDPCQRHADLHHAPPARLSSLVSPWPFHQ 209
H R++A KV R G YWPT+ K + +K+C+ CQRH AP L + WPF +
Sbjct: 651 HQAARTMASKVFRQGLYWPTVMKVCVEQIKKCESCQRHGRSQAAPQYDLQPIAPIWPFAR 710
Query: 210 WGMDLLGPFDTAPG*LKYLVVAVDYYTKWIEAEPLATITSARVQRFFYKNVIRRFGVPGV 269
WG+D++GPF A K+++VAV+Y+++WIEAEPL ITSA VQ+F +KN+I FGVP
Sbjct: 711 WGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPLGAITSAAVQKFVWKNIICHFGVPKE 770
Query: 270 LITDNGTQFTSKGFRDLLDGLHIKQRFTSVEHPQTNGQAESANRVILRGLRKRL-GDAKG 328
ITDNG QF S FR++ + L+++ RF SV HPQ+NG AE N IL L+KRL G AKG
Sbjct: 771 FITDNGKQFDSDKFREMCEALNLEIRFASVAHPQSNGAAERTNGKILEALKKRLEGAAKG 830
Query: 329 DWAEQLDHVLWAYRTTPHSTTGESPYRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLG 388
W E+L VLWA RTTP T SP+ L +G +A+IPAE+ S R F + + +
Sbjct: 831 KWPEELLSVLWALRTTPIRPTKFSPFMLLYGDDAMIPAELGANSPRVM-FSGGEEGREVS 889
Query: 389 EDLDLLAERRAIANCRELIAKQEAAIRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLA 448
+L A+ + + A YNKKV G LVL+ A GKL
Sbjct: 890 LELLEAVRVEALEHMHKYATSTSAT--YNKKVRPTELMPGHLVLRKK---ANPLAVGKLE 944
Query: 449 AKWEGPYRVVEATGTGAYKLETLAGKEIPRTWNATNLRRYY 489
+KWEGPY + + TG+++L TL G+E +WNA +L+R+Y
Sbjct: 945 SKWEGPYIIKHKSRTGSFRLATLEGEEFDHSWNAASLKRFY 985
>ref|NP_914621.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2030
Score = 330 bits (846), Expect = 6e-89
Identities = 194/496 (39%), Positives = 264/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1544 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERLTQPSARPDPLGETDAPDRPPRPVGV 1602
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +Q LPE++ ++++ R + Y +V L++R
Sbjct: 1603 QA--SGPEGSAPSSLRLIAWISEIQTYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRR 1660
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ K++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1661 AANGILLKCIPKEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1720
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1721 CRACQFHAKQIHQPAQALQIIPLSWPFAAWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 1780
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1781 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1839
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1840 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1896
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1897 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1956
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 1957 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSVRLATGDG 2013
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 2014 TELPNPWNIEHLRRFY 2029
>gb|AAP53392.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533606|ref|NP_921105.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23396194|gb|AAN31788.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 2027
Score = 330 bits (845), Expect = 8e-89
Identities = 194/496 (39%), Positives = 265/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1541 LRHVPRRDNMVADELSRLASSRAQTPP-GAFEERLTQPSARPDPLGETDAPDRPPRPVGV 1599
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1600 QA--SGPEGSAPSSLRLIAWISEIQAYLTDKTLPEDREGSERVQRISKRYVLVEGTLYRR 1657
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1658 AANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1717
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1718 CRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 1777
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1778 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1836
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1837 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1893
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1894 FFLVYGAEAVLPSELTLRSPRATMYCEVDQDQLRRDDLDYLEERRRHAALRAARYQQSLR 1953
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 1954 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVISVPRPGSIRLATGDG 2010
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 2011 TELPNPWNIEHLRRFY 2026
>gb|AAX95184.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 963
Score = 330 bits (845), Expect = 8e-89
Identities = 194/496 (39%), Positives = 264/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + R AR PL PRP G
Sbjct: 477 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERLTRPSARPDPLGETDAPDRPPRPVGV 535
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +Q LPE++ ++++ R + Y +V L++R
Sbjct: 536 QA--SGPEGSAPSSLRLIAWISEIQTYLTDETLPEDREGSERVQRISKRYVLVEGTLYRR 593
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 594 AANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 653
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 654 CRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 713
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 714 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 772
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 773 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 829
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 830 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 889
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 890 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSVRLATGDG 946
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 947 TELPNPWNIEHLRRFY 962
>emb|CAE06012.3| OSJNBa0016O02.22 [Oryza sativa (japonica cultivar-group)]
gi|50924956|ref|XP_472817.1| OSJNBa0016O02.22 [Oryza
sativa (japonica cultivar-group)]
Length = 2027
Score = 330 bits (845), Expect = 8e-89
Identities = 191/493 (38%), Positives = 263/493 (52%), Gaps = 11/493 (2%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1541 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERLAQPSARPDPLGETDAPDRPPRPVGV 1599
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1600 QA--SGPEGSAPNSLRLIAWIAEIQAYLTDKTLPEDREGSERVHRISKRYVLVEGTLYRR 1657
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1658 AANGILLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1717
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L ++ WPF WG+D+LGPF APG +YL VA+D +TKW+E
Sbjct: 1718 CRACQFHAKQIHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDRFTKWLE 1777
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1778 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1836
Query: 301 HPQTNGQAESANRVILRGLRKR----LGDAKGDWAEQLDHVLWAYRTTPHSTTGESPYRL 356
HP++NGQ E AN IL+GL+ + L W E+L VLWA RTTP TGE+P+ L
Sbjct: 1837 HPRSNGQVERANAEILKGLKTKTFNILKKHGNSWIEELPAVLWANRTTPSRATGETPFFL 1896
Query: 357 TFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAAIRY 416
+G EAV+P+E+ S R + +QL +DLD L ERR A R +Q +
Sbjct: 1897 VYGAEAVLPSELTLRSPRATMYCEADQNQLRRDDLDYLEERRRRAALRAARYQQSLRRYH 1956
Query: 417 NKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAGKEI 476
V RS DLVL+ A + KL+ WEGPYRV+ G+++L T G E+
Sbjct: 1957 QHHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSFRLATGDGTEL 2013
Query: 477 PRTWNATNLRRYY 489
P WN +LRR+Y
Sbjct: 2014 PNPWNIEHLRRFY 2026
>gb|AAK55777.1| Putative polyprotein [Oryza sativa]
Length = 1992
Score = 330 bits (845), Expect = 8e-89
Identities = 193/496 (38%), Positives = 265/496 (52%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + + AR PL PRP G
Sbjct: 1506 LRHVPRRDNMMADELSRLASSRAQTPP-GAFEERLAQPSARPDPLGETDAPDRPPRPVGV 1564
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +QA LPE++ ++++ R + Y +V L++R
Sbjct: 1565 QA--SGPEGSAPSSLRLIAWIAEIQAYLTDKTLPEDREGSERVHRISKRYVLVEGTLYRR 1622
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1623 AANGVLLKCIPREQGVVLLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1682
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L ++ WPF WG+D+LGPF APG +YL VA+D +TKW +
Sbjct: 1683 CRACQFHAKQIHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAIDKFTKWPK 1742
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1743 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1801
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN +L+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1802 HPRSNGQVERANAEVLKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1858
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1859 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1918
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRVV G+ +L T G
Sbjct: 1919 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVVGVPRLGSIRLATGDG 1975
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN LRR+Y
Sbjct: 1976 TELPNPWNIERLRRFY 1991
>gb|AAX96661.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 2027
Score = 330 bits (845), Expect = 8e-89
Identities = 194/496 (39%), Positives = 264/496 (53%), Gaps = 17/496 (3%)
Query: 1 IRDAQEEIHMLRARLRQLEEQETQSRPCPRFPRKRRRTGARSHPLTTRKHAAGHPRPSGW 60
+R +M+ L +L Q+ P F + R AR PL PRP G
Sbjct: 1541 LRHVPRRDNMIADELSRLASSRAQTPP-GAFEERLTRPSARPDPLGETDAPDRPPRPVGV 1599
Query: 61 PAIHRGAHPGAGAHLRLGIGLLAVQASTLSGWLPEEKAEAKKLVRRASWYTIVNDDLFKR 120
A G A + LRL + +Q LPE++ ++++ R + Y +V L++R
Sbjct: 1600 QA--SGPEGSAPSSLRLIAWISEIQTYLTDETLPEDREGSERVQRISKRYVLVEGTLYRR 1657
Query: 121 GFSTPLLKCLAKDRAAYVLAEIHEGSCGHHLGGRSLARKVLRAGYYWPTLEKDAADHVKQ 180
+ LLKC+ +++ +LA+IHEG CG H R+L K R G+YWPT DA D V++
Sbjct: 1658 AANGILLKCIPQEQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVRR 1717
Query: 181 CDPCQRHADLHHAPPARLSSLVSPWPFHQWGMDLLGPFDTAPG*LKYLVVAVDYYTKWIE 240
C CQ HA H P L + WPF WG+D+LGPF APG +YL VA+D +TKW E
Sbjct: 1718 CRACQFHAKQIHQPAQALQIIPLSWPFAVWGLDILGPFKRAPGGFEYLYVAIDKFTKWPE 1777
Query: 241 AEPLATITSARVQRFFYKNVIRRFGVPGVLITDNGTQFTSKGFRDLLDGLHIKQRFTSVE 300
A P+ I +F K + RFGVP +ITDNGTQFTS+ F D + + IK F S
Sbjct: 1778 AYPVVKIDKHSALKFI-KGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPA 1836
Query: 301 HPQTNGQAESANRVILRGLR-------KRLGDAKGDWAEQLDHVLWAYRTTPHSTTGESP 353
HP++NGQ E AN IL+GL+ K+ GD+ W E+L VLWA RTTP TGE+P
Sbjct: 1837 HPRSNGQVERANAEILKGLKTKTFNILKKHGDS---WIEELPAVLWANRTTPSRATGETP 1893
Query: 354 YRLTFGTEAVIPAEIREPSARTAGFDLNQNDQLLGEDLDLLAERRAIANCRELIAKQEAA 413
+ L +G EAV+P+E+ S R + DQL +DLD L ERR A R +Q
Sbjct: 1894 FFLVYGAEAVLPSELTLRSPRATMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLR 1953
Query: 414 IRYNKKVVLRSFAAGDLVLQNASIGARSTERGKLAAKWEGPYRVVEATGTGAYKLETLAG 473
+ + V RS DLVL+ A + KL+ WEGPYRV+ G+ +L T G
Sbjct: 1954 RYHQRHVRARSLCVDDLVLRRVQTRAGLS---KLSPMWEGPYRVIGVPRPGSVRLATGDG 2010
Query: 474 KEIPRTWNATNLRRYY 489
E+P WN +LRR+Y
Sbjct: 2011 TELPNPWNIEHLRRFY 2026
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 858,557,649
Number of Sequences: 2540612
Number of extensions: 37468797
Number of successful extensions: 95783
Number of sequences better than 10.0: 4099
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 2089
Number of HSP's that attempted gapping in prelim test: 88949
Number of HSP's gapped (non-prelim): 4785
length of query: 489
length of database: 863,360,394
effective HSP length: 132
effective length of query: 357
effective length of database: 527,999,610
effective search space: 188495860770
effective search space used: 188495860770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0083.15