BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0083.13
(195 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD81987.1| hypothetical protein [Oryza sativa (japonica cul... 36 0.52
gb|AAA82043.1| Rep 35 0.89
ref|NP_064411.1| HLA-B associated transcript 2 [Mus musculus] gi... 34 2.6
emb|CAI44182.1| hypothetical protein [Acidianus rod-shaped virus 1] 34 2.6
dbj|BAD90525.1| mKIAA4178 protein [Mus musculus] 34 2.6
gb|AAH53522.1| HLA-B associated transcript 2 [Mus musculus] 34 2.6
gb|EAA38979.1| GLP_205_38349_33706 [Giardia lamblia ATCC 50803] 33 3.4
emb|CAD71786.1| hypothetical protein-transmembrane prediction [R... 33 4.4
gb|AAK54244.1| centrosome-associated AKAP350-binding protein TAC... 33 4.4
gb|AAM10051.1| similar to SRC2 dbj|BAA19769 [Arabidopsis thalian... 33 4.4
gb|AAO25635.1| TACC3 [Oryctolagus cuniculus] 33 4.4
gb|EAA73873.1| hypothetical protein FG06299.1 [Gibberella zeae P... 33 5.8
gb|EAL17857.1| hypothetical protein CNBL1190 [Cryptococcus neofo... 33 5.8
dbj|BAA75913.1| uridylyl transferase [Pseudomonas aeruginosa] 33 5.8
gb|AAH60668.1| BAT2 protein [Homo sapiens] 32 7.6
emb|CAI95572.1| OTTHUMP00000068361 [Homo sapiens] gi|56206352|em... 32 7.6
ref|XP_540029.1| PREDICTED: similar to hypothetical protein [Can... 32 7.6
emb|CAI18313.1| HLA-B associated transcript 2 [Homo sapiens] 32 7.6
ref|XP_527074.1| PREDICTED: similar to TCOF1 protein [Pan troglo... 32 7.6
sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 (HLA-B-asso... 32 7.6
>dbj|BAD81987.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 227
Score = 36.2 bits (82), Expect = 0.52
Identities = 23/76 (30%), Positives = 29/76 (37%), Gaps = 6/76 (7%)
Query: 5 ETKGHRPIRPC------HVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASHP 58
E HR +RPC H E + H PP G +QR P + H + + S
Sbjct: 52 EVSRHRRLRPCPPPSTLHTEPEPRRRQPHPPPSTVHIGARRQRPRPPSGARHRQPRPSST 111
Query: 59 PQDKMTSPEAYLKALR 74
PQ TS L R
Sbjct: 112 PQPAATSSTLELNCRR 127
>gb|AAA82043.1| Rep
Length = 360
Score = 35.4 bits (80), Expect = 0.89
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 3/70 (4%)
Query: 11 PIRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASH---PPQDKMTSPE 67
P+R HVR++ VT + A RG A++ P G K+ +H PP SP
Sbjct: 154 PVRDQHVRQDVVTTRNRRRTGAGNRGAARRARPDGYGLALAKTWRAHPQAPPWCHRHSPT 213
Query: 68 AYLKALRAEA 77
A+ L A A
Sbjct: 214 AWAAILAAPA 223
>ref|NP_064411.1| HLA-B associated transcript 2 [Mus musculus]
gi|3941737|gb|AAC82480.1| BAT2 [Mus musculus]
Length = 2157
Score = 33.9 bits (76), Expect = 2.6
Identities = 25/92 (27%), Positives = 35/92 (37%), Gaps = 14/92 (15%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 587 PVEPQLPSKEGPEPPEEVPPPTTPPAPKMEPKGDGVGSTRQPPSQGLGYPKYQKSLPPRF 646
Query: 62 KMTSPEAYLKALRAEALDCNLYYSYQTQVTAP 93
+ E LK + + + Q Q TAP
Sbjct: 647 QRQQQEQLLKQQQQQQ-----QWQQQQQGTAP 673
>emb|CAI44182.1| hypothetical protein [Acidianus rod-shaped virus 1]
Length = 590
Score = 33.9 bits (76), Expect = 2.6
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 50 HPKSQASHPPQDKMTSPEAYLKALRAEALDCNLYYSYQTQVTAPGRIRSLVSGLLTEDLD 109
+PK + P K+ +PE Y +L +L + YQT+ T R L+S +TE +
Sbjct: 94 YPKIVSQIPQLQKLVAPELYAPSLFKVKYQLSLVHKYQTE-TINALARFLISH-VTEFMP 151
Query: 110 PQLKAGLLTFLELTEEMWEL 129
P L AG +T + ++ + L
Sbjct: 152 PNLVAGGMTTVSGSQNLKSL 171
>dbj|BAD90525.1| mKIAA4178 protein [Mus musculus]
Length = 1796
Score = 33.9 bits (76), Expect = 2.6
Identities = 25/92 (27%), Positives = 35/92 (37%), Gaps = 14/92 (15%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 582 PVEPQLPSKEGPEPPEEVPPPTTPPAPKMEPKGDGVGSTRQPPSQGLGYPKYQKSLPPRF 641
Query: 62 KMTSPEAYLKALRAEALDCNLYYSYQTQVTAP 93
+ E LK + + + Q Q TAP
Sbjct: 642 QRQQQEQLLKQQQQQQ-----QWQQQQQGTAP 668
>gb|AAH53522.1| HLA-B associated transcript 2 [Mus musculus]
Length = 2158
Score = 33.9 bits (76), Expect = 2.6
Identities = 25/92 (27%), Positives = 35/92 (37%), Gaps = 14/92 (15%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 587 PVEPQLPSKEGPEPPEEVPPPTTPPAPKMEPKGDGVGSTRQPPSQGLGYPKYQKSLPPRF 646
Query: 62 KMTSPEAYLKALRAEALDCNLYYSYQTQVTAP 93
+ E LK + + + Q Q TAP
Sbjct: 647 QRQQQEQLLKQQQQQQ-----QWQQQQQGTAP 673
>gb|EAA38979.1| GLP_205_38349_33706 [Giardia lamblia ATCC 50803]
Length = 1547
Score = 33.5 bits (75), Expect = 3.4
Identities = 32/120 (26%), Positives = 52/120 (42%), Gaps = 5/120 (4%)
Query: 61 DKMTSPEAYLKALR-AEALDCNL-YYSYQTQVTAPGRIRSLVSGLLTEDLDPQLKAGLLT 118
DK+ +++ K + E NL YY+Y Q GRI + G+L LD L +
Sbjct: 1369 DKLAYMDSFNKLYKHVELYAQNLAYYNYGVQELDRGRIAYSIGGML---LDAVLGDLVQY 1425
Query: 119 FLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIEAELTSLLATREGLDRD 178
L LT++ HRR L G+ S+ + K + T A++ + + G +D
Sbjct: 1426 TLRLTKKQSAQHRRMLLTESSTGGIAESSLDCKAQHAVTSISSTAQMCASAGDQHGTPKD 1485
>emb|CAD71786.1| hypothetical protein-transmembrane prediction [Rhodopirellula
baltica SH 1] gi|32471116|ref|NP_864109.1| hypothetical
protein-transmembrane prediction [Rhodopirellula baltica
SH 1]
Length = 356
Score = 33.1 bits (74), Expect = 4.4
Identities = 38/138 (27%), Positives = 57/138 (40%), Gaps = 34/138 (24%)
Query: 43 PPGNDTYHPK----SQASHPPQDKMTSPEAYLKALRAEALDCNLYYSYQTQVTAPGRIRS 98
P G T PK SQ S Q M + A +++R E N+ Y ++ R R
Sbjct: 61 PEGLPTPEPKLATDSQLSELAQTAMRAAAAQRESMRLE----NMVKRYDMELEQAKRERG 116
Query: 99 LVSGLLTEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTM 158
+ LLT L EE WE +++L+ + +V A + E M
Sbjct: 117 ALLDLLT----------------LAEEAWEQKQKQLDQD------KVRAAKLGSE----M 150
Query: 159 GEIEAELTSLLATREGLD 176
E+ AEL +L T+E L+
Sbjct: 151 REVSAELATLAGTKERLE 168
>gb|AAK54244.1| centrosome-associated AKAP350-binding protein TACC4 [Oryctolagus
cuniculus]
Length = 454
Score = 33.1 bits (74), Expect = 4.4
Identities = 23/81 (28%), Positives = 35/81 (42%)
Query: 107 DLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIEAELT 166
DLD ++A LEL ELH + LE+ ++ G E + E AE+
Sbjct: 259 DLDAAVQAAQQENLELRSRCEELHTKNLEMGKIMDGFEGIVYQAMEEVQRQKEAARAEVQ 318
Query: 167 SLLATREGLDRDLGAVHLRYN 187
+L RE L DL + ++
Sbjct: 319 KVLKDREQLAADLSSTEKSFS 339
>gb|AAM10051.1| similar to SRC2 dbj|BAA19769 [Arabidopsis thaliana]
gi|18390752|ref|NP_563785.1| C2 domain-containing
protein [Arabidopsis thaliana]
gi|15451132|gb|AAK96837.1| similar to SRC2 [Arabidopsis
thaliana] gi|8778551|gb|AAF79559.1| F22G5.35
[Arabidopsis thaliana]
Length = 352
Score = 33.1 bits (74), Expect = 4.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 17 VRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASHPPQDKMTSP 66
++ + +H PP+ + + L P GN Y P PPQ +T+P
Sbjct: 135 IKDRPIPPPQHPPPRPQSQPLDYYSAPQGNHYYSPSPPPPPPPQAPITAP 184
>gb|AAO25635.1| TACC3 [Oryctolagus cuniculus]
Length = 736
Score = 33.1 bits (74), Expect = 4.4
Identities = 23/81 (28%), Positives = 35/81 (42%)
Query: 107 DLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGEETGTMGEIEAELT 166
DLD ++A LEL ELH + LE+ ++ G E + E AE+
Sbjct: 541 DLDAAVQAAQQENLELRSRCEELHTKNLEMGKIMDGFEGIVYQAMEEVQRQKEAARAEVQ 600
Query: 167 SLLATREGLDRDLGAVHLRYN 187
+L RE L DL + ++
Sbjct: 601 KVLKDREQLAADLSSTEKSFS 621
>gb|EAA73873.1| hypothetical protein FG06299.1 [Gibberella zeae PH-1]
gi|46123843|ref|XP_386475.1| hypothetical protein
FG06299.1 [Gibberella zeae PH-1]
Length = 761
Score = 32.7 bits (73), Expect = 5.8
Identities = 21/78 (26%), Positives = 40/78 (50%)
Query: 94 GRIRSLVSGLLTEDLDPQLKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHKGE 153
G +++ G L P + A LT ++ E++ EL R+ + WG ++ ++++
Sbjct: 648 GFFSNIIGGGLWSRGTPSVTAKTLTVEDMNEQLDELLRQSIYNFTHRWGSLMNDSQNRKP 707
Query: 154 ETGTMGEIEAELTSLLAT 171
+ ++EAEL SLL T
Sbjct: 708 GVKPIAKVEAELESLLMT 725
>gb|EAL17857.1| hypothetical protein CNBL1190 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 534
Score = 32.7 bits (73), Expect = 5.8
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 29 PPKARGRGLAKQRDPPGNDTYHPKSQASHPPQDKMTSP 66
P + RGRG A R G P S PPQD +SP
Sbjct: 469 PARGRGRGKAYSRGRSGGGGPRPTSDTRTPPQDGQSSP 506
>dbj|BAA75913.1| uridylyl transferase [Pseudomonas aeruginosa]
Length = 900
Score = 32.7 bits (73), Expect = 5.8
Identities = 27/92 (29%), Positives = 37/92 (39%), Gaps = 3/92 (3%)
Query: 6 TKGHRPIRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHP--KSQASHPPQDKM 63
T+ HRP R C E + P R RGLA + DPP H Q +HP + +
Sbjct: 645 TQRHRPGR-CRAVMEPARRRLLPAPHRRRRGLAHRGDPPAPGRRHAAGADQGNHPARVRE 703
Query: 64 TSPEAYLKALRAEALDCNLYYSYQTQVTAPGR 95
+ +L+ A L + Q PGR
Sbjct: 704 RFADLHLRRRPARFLRGHRGRHGPAQPEHPGR 735
>gb|AAH60668.1| BAT2 protein [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 7.6
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 588 PVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRF 647
Query: 62 KMTSPEAYLK 71
+ E LK
Sbjct: 648 QRQQQEQLLK 657
>emb|CAI95572.1| OTTHUMP00000068361 [Homo sapiens] gi|56206352|emb|CAI18500.1| HLA-B
associated transcript 2 [Homo sapiens]
gi|55961561|emb|CAI17699.1| HLA-B associated transcript
2 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 7.6
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 588 PVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRF 647
Query: 62 KMTSPEAYLK 71
+ E LK
Sbjct: 648 QRQQQEQLLK 657
>ref|XP_540029.1| PREDICTED: similar to hypothetical protein [Canis familiaris]
Length = 1469
Score = 32.3 bits (72), Expect = 7.6
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 18 RKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKSQASHPP------------QDKMTS 65
R A A R +P + G+G + QRD P + P ++ P +++
Sbjct: 83 RVPASAAGRASPGASAGKGASSQRDSPPGPRWLPSRRSGDAPPTPGRAFATARQREQRGR 142
Query: 66 PEAYLKALRAEALDCNLYYSYQTQVTA 92
P +L+ALRA L + S++ Q TA
Sbjct: 143 PRPFLRALRAPGLR-EAHSSHRGQSTA 168
>emb|CAI18313.1| HLA-B associated transcript 2 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 7.6
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 588 PVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRF 647
Query: 62 KMTSPEAYLK 71
+ E LK
Sbjct: 648 QRQQQEQLLK 657
>ref|XP_527074.1| PREDICTED: similar to TCOF1 protein [Pan troglodytes]
Length = 1720
Score = 32.3 bits (72), Expect = 7.6
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 25/177 (14%)
Query: 12 IRPCHVRKEAVTAKRHTPPKARGRGLAKQRDPPGNDTYHPKS------------------ 53
+ P + + T K + P LA + DP G P+
Sbjct: 1435 LTPANSQASKATPKLDSSPSVSST-LAAKDDPDGKQEAKPQQAAGMLSPKTGGKEAASGT 1493
Query: 54 --QASHPPQDKMTSPEAYLKALRAEALDCNLYYSYQTQVTAPGRIRSLVSGLLTEDLDPQ 111
Q S P+ +P+A AL++ C L + ++++ V +LTE L+ +
Sbjct: 1494 TPQKSRKPKKGAGNPQASTLALQSNIAQCLLGQPWPLN---EAQVQASVVKVLTELLEQE 1550
Query: 112 LKAGLLTFLELTEEMWELHRRRLEVNMLIWGLEVSATEHK-GEETGTMGEIEAELTS 167
K + T E + + WE +R+L + L S + K G G + E TS
Sbjct: 1551 RKKVVDTTKESSRKGWESRKRKLSGDQLAARTPRSKKKKKLGAREGGEASVSPEKTS 1607
>sp|P48634|BAT2_HUMAN Large proline-rich protein BAT2 (HLA-B-associated transcript 2)
(G2) gi|179345|gb|AAA35586.1| HLA-B-associated
transcript 2 (BAT2) gi|179339|gb|AAA35585.1|
HLA-B-associated transcript 2 (BAT2)
Length = 2142
Score = 32.3 bits (72), Expect = 7.6
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 11 PIRPCHVRKEAVTAKRHTPP---------KARGRGLAKQRDPPGNDTYHPKSQASHPPQD 61
P+ P KE PP + +G G+ R PP +PK Q S PP+
Sbjct: 576 PVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRF 635
Query: 62 KMTSPEAYLK 71
+ E LK
Sbjct: 636 QRQQQEQLLK 645
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,276,347
Number of Sequences: 2540612
Number of extensions: 13949667
Number of successful extensions: 36513
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 36491
Number of HSP's gapped (non-prelim): 48
length of query: 195
length of database: 863,360,394
effective HSP length: 121
effective length of query: 74
effective length of database: 555,946,342
effective search space: 41140029308
effective search space used: 41140029308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0083.13