BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0082b.8
(726 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_973758.1| zinc finger (C3HC4-type RING finger) family pro... 542 e-152
ref|NP_171898.2| zinc finger (C3HC4-type RING finger) family pro... 542 e-152
pir||D86171 hypothetical protein [imported] - Arabidopsis thalia... 442 e-122
emb|CAE03392.2| OSJNBa0004N05.16 [Oryza sativa (japonica cultiva... 425 e-117
ref|XP_475695.1| unknown protein [Oryza sativa (japonica cultiva... 330 1e-88
gb|AAV59289.1| putative BRCT domain-containing protein [Oryza sa... 326 1e-87
gb|AAQ65170.1| At4g21070 [Arabidopsis thaliana] gi|28372474|gb|A... 317 1e-84
ref|NP_193839.3| BRCT domain-containing protein / zinc finger (C... 317 1e-84
emb|CAA17526.1| putative protein (fragment) [Arabidopsis thalian... 305 4e-81
emb|CAB79107.1| putative protein (fragment) [Arabidopsis thalian... 281 4e-74
emb|CAG31752.1| hypothetical protein [Gallus gallus] 94 2e-17
ref|XP_421866.1| PREDICTED: similar to BRCA1-associated RING dom... 94 2e-17
gb|AAR89523.1| breast cancer 1 [Tetraodon nigroviridis] 93 3e-17
ref|NP_072144.1| BRCA1 associated RING domain 1 [Rattus norvegic... 91 2e-16
gb|AAT35115.1| BRCA1-associated RING domain protein 1 beta isofo... 91 2e-16
ref|NP_031551.1| BRCA1 associated RING domain 1 [Mus musculus] g... 87 3e-15
gb|AAX93130.1| unknown [Homo sapiens] 86 3e-15
dbj|BAD97129.1| BRCA1 associated RING domain 1 variant [Homo sap... 86 3e-15
ref|NP_000456.1| BRCA1 associated RING domain 1 [Homo sapiens] g... 86 3e-15
gb|AAB99978.1| BRCA1-associated RING domain protein [Homo sapiens] 86 3e-15
>ref|NP_973758.1| zinc finger (C3HC4-type RING finger) family protein / BRCT
domain-containing protein [Arabidopsis thaliana]
Length = 713
Score = 542 bits (1397), Expect = e-152
Identities = 313/755 (41%), Positives = 428/755 (56%), Gaps = 92/755 (12%)
Query: 13 LMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYA 72
LMNPW+LH QKL LELKCPLCL L +PVLLPCDH+FCDSC+ SS S C VCK+K+
Sbjct: 8 LMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHP 67
Query: 73 QTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNF 132
+ R++ F+E++++IY+SL+A+ L Q Q D +Y N
Sbjct: 68 KKARRDLRFMESVISIYKSLNAAVSVH------------LPQLQIPNDCNYKN------- 108
Query: 133 SQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRS---RVEIGD 189
+ NSN GE+ S +T +++ SGG D P P R + D
Sbjct: 109 -DALNNSNSPKHGESEDSEMT----DKDVSKRSGGTDSSSRDGSPLPTSEESDPRPKHQD 163
Query: 190 YVEMDVNQVT---------QAAVYSPPFCDTKGSDNDCSELDSDHPFNP---EILENSSL 237
+ E ++ AA ++P + + N S+ P N I +S +
Sbjct: 164 WTEKQLSDHLLLYEFESEYDAANHTPESYTEQAAKNVRDITASEQPSNAARKRICGDSFI 223
Query: 238 KRASTGKGNLKERKSQFRSESSASETDKPT----------------RDLKRKKYLTKGDD 281
+ +S N K + + +D PT +D KRK+ +T D
Sbjct: 224 QESSP---NPKTQDPTLLRLMESLRSDDPTDYVKAQNHQLPKSHTEQDSKRKRDITASDA 280
Query: 282 HIQH--VSTHHSKLVDSHCGLDL--KSGKEPGELLPANIPIDLNPSTS---ICSFCQSSE 334
H V + L+ +D K + L I L ++S IC FCQS+
Sbjct: 281 MENHLKVPKRENNLMQKSADIDCNGKCSANSDDQLSEKISKALEQTSSNITICGFCQSAR 340
Query: 335 TSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAK 394
SEATG MLHY+ G+ V GD + NVIHVH C++WAPQVY+ +T KNLKAE+ARG K
Sbjct: 341 VSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLKAELARGMK 400
Query: 395 LKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSR 454
+KC+ C LKGAALGC+VKSC+R+YHVPCA ++S CRWD E +LLLCP HS+ KFP+EKS
Sbjct: 401 IKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSVKFPNEKSG 460
Query: 455 PKKQATQEHPA--SAHLSSQLSNPLGAFHDDGKKVVFCGSALSDEEKGSIENLRVMAVVV 512
+ + P A L S P AF K++V CGSALS +K +E+L V
Sbjct: 461 HRVSRAEPLPKINPAELCSLEQTP--AF---TKELVLCGSALSKSDKKLMESLAV----- 510
Query: 513 SGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKID 572
+ AT++++W VTHVIA+TD GAC+RTLKVLM ILNG+W++
Sbjct: 511 -------------RFNATISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINAA 557
Query: 573 WIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSY 632
W+KA +K V+EEP+EI +D QGC GPK RL A N+PKLF GLKFYF GD+ Y
Sbjct: 558 WMKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKGY 617
Query: 633 KEDLEDLVEVGGGAVLTSKDKL--EAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQ 690
KEDL++LV+V GG +L ++D+L E+ + + S+ ++VYN+DPP G LG+EV+ +WQ
Sbjct: 618 KEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIWQ 677
Query: 691 RLNEAEDLAANTGSQVIGHTWILESIAACKLQPFI 725
R N+AE LA+ TGS+++GHTW+LESIA KL P I
Sbjct: 678 RANDAEALASQTGSRLVGHTWVLESIAGYKLHPVI 712
>ref|NP_171898.2| zinc finger (C3HC4-type RING finger) family protein / BRCT
domain-containing protein [Arabidopsis thaliana]
Length = 714
Score = 542 bits (1396), Expect = e-152
Identities = 313/756 (41%), Positives = 428/756 (56%), Gaps = 93/756 (12%)
Query: 13 LMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYA 72
LMNPW+LH QKL LELKCPLCL L +PVLLPCDH+FCDSC+ SS S C VCK+K+
Sbjct: 8 LMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHP 67
Query: 73 QTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNF 132
+ R++ F+E++++IY+SL+A+ L Q Q D +Y N
Sbjct: 68 KKARRDLRFMESVISIYKSLNAAVSVH------------LPQLQIPNDCNYKN------- 108
Query: 133 SQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRS---RVEIGD 189
+ NSN GE+ S +T +++ SGG D P P R + D
Sbjct: 109 -DALNNSNSPKHGESEDSEMT----DKDVSKRSGGTDSSSRDGSPLPTSEESDPRPKHQD 163
Query: 190 YVEMDVNQVT---------QAAVYSPPFCDTKGSDNDCSELDSDHPFNP---EILENSSL 237
+ E ++ AA ++P + + N S+ P N I +S +
Sbjct: 164 WTEKQLSDHLLLYEFESEYDAANHTPESYTEQAAKNVRDITASEQPSNAARKRICGDSFI 223
Query: 238 KRASTGKGNLKERKSQFRSESSASETDKPT-----------------RDLKRKKYLTKGD 280
+ +S N K + + +D PT +D KRK+ +T D
Sbjct: 224 QESSP---NPKTQDPTLLRLMESLRSDDPTDYVKAQNHQQLPKSHTEQDSKRKRDITASD 280
Query: 281 DHIQH--VSTHHSKLVDSHCGLDL--KSGKEPGELLPANIPIDLNPSTS---ICSFCQSS 333
H V + L+ +D K + L I L ++S IC FCQS+
Sbjct: 281 AMENHLKVPKRENNLMQKSADIDCNGKCSANSDDQLSEKISKALEQTSSNITICGFCQSA 340
Query: 334 ETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGA 393
SEATG MLHY+ G+ V GD + NVIHVH C++WAPQVY+ +T KNLKAE+ARG
Sbjct: 341 RVSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLKAELARGM 400
Query: 394 KLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKS 453
K+KC+ C LKGAALGC+VKSC+R+YHVPCA ++S CRWD E +LLLCP HS+ KFP+EKS
Sbjct: 401 KIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSVKFPNEKS 460
Query: 454 RPKKQATQEHPA--SAHLSSQLSNPLGAFHDDGKKVVFCGSALSDEEKGSIENLRVMAVV 511
+ + P A L S P AF K++V CGSALS +K +E+L V
Sbjct: 461 GHRVSRAEPLPKINPAELCSLEQTP--AF---TKELVLCGSALSKSDKKLMESLAV---- 511
Query: 512 VSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKI 571
+ AT++++W VTHVIA+TD GAC+RTLKVLM ILNG+W++
Sbjct: 512 --------------RFNATISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINA 557
Query: 572 DWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSS 631
W+KA +K V+EEP+EI +D QGC GPK RL A N+PKLF GLKFYF GD+
Sbjct: 558 AWMKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKG 617
Query: 632 YKEDLEDLVEVGGGAVLTSKDKL--EAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLW 689
YKEDL++LV+V GG +L ++D+L E+ + + S+ ++VYN+DPP G LG+EV+ +W
Sbjct: 618 YKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIW 677
Query: 690 QRLNEAEDLAANTGSQVIGHTWILESIAACKLQPFI 725
QR N+AE LA+ TGS+++GHTW+LESIA KL P I
Sbjct: 678 QRANDAEALASQTGSRLVGHTWVLESIAGYKLHPVI 713
>pir||D86171 hypothetical protein [imported] - Arabidopsis thaliana
gi|4204288|gb|AAD10669.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 727
Score = 442 bits (1138), Expect = e-122
Identities = 227/469 (48%), Positives = 302/469 (63%), Gaps = 34/469 (7%)
Query: 268 RDLKRKKYLTKGDDHIQH--VSTHHSKLVDSHCGLDL--KSGKEPGELLPANIPIDLNPS 323
+D KRK+ +T D H V + L+ +D K + L I L +
Sbjct: 281 QDSKRKRDITASDAMENHLKVPKRENNLMQKSADIDCNGKCSANSDDQLSEKISKALEQT 340
Query: 324 TS---ICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDE 380
+S IC FCQS+ SEATG MLHY+ G+ V GD + NVIHVH C++WAPQVY+ +
Sbjct: 341 SSNITICGFCQSARVSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGD 400
Query: 381 TCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLC 440
T KNLKAE+ARG K+KC+ C LKGAALGC+VKSC+R+YHVPCA ++S CRWD E +LLLC
Sbjct: 401 TVKNLKAELARGMKIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLC 460
Query: 441 PVHSNAKFPHEKSRPKKQATQEHPA--SAHLSSQLSNPLGAFHDDGKKVVFCGSALSDEE 498
P HS+ KFP+EKS + + P A L S P AF K++V CGSALS +
Sbjct: 461 PAHSSVKFPNEKSGHRVSRAEPLPKINPAELCSLEQTP--AF---TKELVLCGSALSKSD 515
Query: 499 KGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKV 558
K +E+L V + AT++++W VTHVIA+TD GAC+RTLKV
Sbjct: 516 KKLMESLAV------------------RFNATISRYWNPSVTHVIASTDEKGACTRTLKV 557
Query: 559 LMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFS 618
LM ILNG+W++ W+KA +K V+EEP+EI +D QGC GPK RL A N+PKLF
Sbjct: 558 LMGILNGKWIINAAWMKASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFE 617
Query: 619 GLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKL--EAKRHEFEVTSNLLIVYNLDPP 676
GLKFYF GD+ YKEDL++LV+V GG +L ++D+L E+ + + S+ ++VYN+DPP
Sbjct: 618 GLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSIVVYNIDPP 677
Query: 677 QGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQPFI 725
G LG+EV+ +WQR N+AE LA+ TGS+++GHTW+LESIA KL P I
Sbjct: 678 HGCALGEEVTIIWQRANDAEALASQTGSRLVGHTWVLESIAGYKLHPVI 726
>emb|CAE03392.2| OSJNBa0004N05.16 [Oryza sativa (japonica cultivar-group)]
gi|50926410|ref|XP_473152.1| OSJNBa0004N05.16 [Oryza
sativa (japonica cultivar-group)]
Length = 629
Score = 425 bits (1093), Expect = e-117
Identities = 269/724 (37%), Positives = 374/724 (51%), Gaps = 116/724 (16%)
Query: 12 KLMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKY 71
+ +NP +L+ QK+ LEL CP+CL L P +LPC H C C ++ G CA+CK+ Y
Sbjct: 6 RFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAICKSAY 65
Query: 72 AQTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADN 131
D+R +E +V I+RSL S S V QQ + ++I A
Sbjct: 66 RSQDLRPASHLEAIVNIHRSLS-----------STVSSMVTQQ------EAQADIPVAKT 108
Query: 132 FSQSSP---NSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPY-PMQRSRVEI 187
Q +P N NG + KS + K S+G G + VK P +R
Sbjct: 109 SFQGTPESGNRNGAEKSDQVKSYTPVASKLA-YNQSTGLAYGNVDGVKERNPALETRGAA 167
Query: 188 GDYVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDHPFNPEILENSSLKRASTGKGNL 247
DV + V P C ++ SD +LD D LE + S+ + L
Sbjct: 168 ------DVTAMPTILVQKGP-CRSQSSDGP-RDLDCDS----NDLEGELITSRSSPQSVL 215
Query: 248 KERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVDSHCGLDLKSGKE 307
K R ++A++ + R+LKR+K T DD V+
Sbjct: 216 K------REPNTANDDN---RELKRQKS-TDQDDRQPAVAGAWK---------------- 249
Query: 308 PGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRC 367
C FC SS+T+E+TGP+ HY +G+ + + A +PNV+HVH
Sbjct: 250 -------------------CEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEK 290
Query: 368 CVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVS 427
C++WAPQ +F + NL+ E+AR +K+KCS CGLKGAALGC VKSC++++HVPCA +S
Sbjct: 291 CIEWAPQAFFTGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGIS 350
Query: 428 TCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHLSSQLSNPLGAFHDDG--- 484
CRWD E +++LCP HS+ K P E+S+ K + T +S+ N H DG
Sbjct: 351 GCRWDDENFVMLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWT 410
Query: 485 ------KKVVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSD 538
+ V CGSALS +EK +L F + G TVT W S+
Sbjct: 411 ASPFLTSEWVICGSALSSQEK------------------EILDQFEHQTGITVTNGWRSN 452
Query: 539 VTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGC 598
VTHVIA TD GAC+RTLKVLMAIL G+WVL I+W+KACM+ V EEPYEIS D G
Sbjct: 453 VTHVIANTDECGACARTLKVLMAILAGKWVLNINWLKACMEAKEPVPEEPYEISSDVHGS 512
Query: 599 NGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKR 658
GP+ GRL A+ N P LF+GL FYFSG ++ +YK LEDL+ GG++L D
Sbjct: 513 FDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKVHLEDLITAAGGSILDKAD------ 566
Query: 659 HEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAA 718
++S LI+Y+++PPQGS + +R EAE+LAA GS+ + HT +L+SIA+
Sbjct: 567 ----LSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAEELAATIGSRAVPHTCVLDSIAS 622
Query: 719 CKLQ 722
C +Q
Sbjct: 623 CTVQ 626
>ref|XP_475695.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|48475075|gb|AAT44144.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 995
Score = 330 bits (845), Expect = 1e-88
Identities = 161/407 (39%), Positives = 237/407 (57%), Gaps = 28/407 (6%)
Query: 327 CSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLK 386
C+FCQ+ +E +G M+HY NGK V + NV+H H+ C++WAP VYF D++ NL
Sbjct: 606 CAFCQTDVITEESGEMVHYQNGKQVPAEFNGGANVVHSHKNCLEWAPDVYFEDDSAFNLT 665
Query: 387 AEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNA 446
E+AR ++KC+ CG+KGAALGC+ SC+R++H CA + CRWD E +++LCP+H +
Sbjct: 666 TELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAKLIPECRWDNENFVMLCPLHRST 725
Query: 447 KFPHEKSRPKKQATQEHPASAHLSSQLSNPLGAFHDDG----------KKVVFCGSALSD 496
K P+E S +KQ ++ S+ +G+ D G +K V C S+LS
Sbjct: 726 KLPNENSEQQKQPKRKTTLKGITGFSRSSQIGSNQDCGNNWKWPSGSPQKWVLCCSSLSS 785
Query: 497 EEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTL 556
EK L+ FA G ++ W+ +VTHVIA+TD +GAC RTL
Sbjct: 786 SEKE------------------LVSEFAKLAGVPISATWSPNVTHVIASTDLSGACKRTL 827
Query: 557 KVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKL 616
K LMAILNGRW++ IDW+K CM+ M ++E +E++ D G GP+ GR + +PKL
Sbjct: 828 KFLMAILNGRWIVSIDWVKTCMECMEPIDEHKFEVATDVHGITDGPRLGRCRVIDRQPKL 887
Query: 617 FSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNLLIVYNLDPP 676
F ++FY GDY SY+ L+DLV GG VL K ++ + +S+LLIVY+ +
Sbjct: 888 FDSMRFYLHGDYTKSYRGYLQDLVVAAGGIVLQRKPVSRDQQKLLDDSSDLLIVYSFENQ 947
Query: 677 QGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQP 723
+K E +R +A+ LA +G +V+ W+++SIAAC LQP
Sbjct: 948 DRAKSKAETKAADRRQADAQALACASGGRVVSSAWVIDSIAACNLQP 994
Score = 62.4 bits (150), Expect = 5e-08
Identities = 28/76 (36%), Positives = 49/76 (63%), Gaps = 2/76 (2%)
Query: 22 QKLALELKCPLC--LSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNV 79
+K+ ELK + LSL V + C+H+FC+ CL +S S S C VCK + + ++R
Sbjct: 8 EKMGRELKNLVLGSLSLLSSAVSISCNHVFCNDCLTESMKSTSSCPVCKVPFRRREMRPA 67
Query: 80 PFVENMVAIYRSLDAS 95
P ++N+V+I++S++A+
Sbjct: 68 PHMDNLVSIFKSMEAA 83
>gb|AAV59289.1| putative BRCT domain-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 799
Score = 326 bits (836), Expect = 1e-87
Identities = 161/407 (39%), Positives = 237/407 (57%), Gaps = 34/407 (8%)
Query: 327 CSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLK 386
C+FCQ+ +E +G M+HY NGK V + NV+H H+ C++WAP VYF D++ NL
Sbjct: 416 CAFCQTDVITEESGEMVHYQNGKQVPAEFNGGANVVHSHKNCLEWAPDVYFEDDSAFNLT 475
Query: 387 AEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNA 446
E+AR ++KC+ CG+KGAALGC+ SC+R++H CA + CRWD E +++LCP+H +
Sbjct: 476 TELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAKLIPECRWDNENFVMLCPLHRST 535
Query: 447 KFPHEKSRPKKQATQEHPASAHLSSQLSNPLGAFHDDG----------KKVVFCGSALSD 496
K P+E S +KQ ++ S+ +G+ D G +K V C S+LS
Sbjct: 536 KLPNENSEQQKQPKRKTTLKG------SSQIGSNQDCGNNWKWPSGSPQKWVLCCSSLSS 589
Query: 497 EEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTL 556
EK L+ FA G ++ W+ +VTHVIA+TD +GAC RTL
Sbjct: 590 SEKE------------------LVSEFAKLAGVPISATWSPNVTHVIASTDLSGACKRTL 631
Query: 557 KVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKL 616
K LMAILNGRW++ IDW+K CM+ M ++E +E++ D G GP+ GR + +PKL
Sbjct: 632 KFLMAILNGRWIVSIDWVKTCMECMEPIDEHKFEVATDVHGITDGPRLGRCRVIDRQPKL 691
Query: 617 FSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNLLIVYNLDPP 676
F ++FY GDY SY+ L+DLV GG VL K ++ + +S+LLIVY+ +
Sbjct: 692 FDSMRFYLHGDYTKSYRGYLQDLVVAAGGIVLQRKPVSRDQQKLLDDSSDLLIVYSFENQ 751
Query: 677 QGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQP 723
+K E +R +A+ LA +G +V+ W+++SIAAC LQP
Sbjct: 752 DRAKSKAETKAADRRQADAQALACASGGRVVSSAWVIDSIAACNLQP 798
>gb|AAQ65170.1| At4g21070 [Arabidopsis thaliana] gi|28372474|gb|AAO39850.1| BRCA1
[Arabidopsis thaliana] gi|19698963|gb|AAL91217.1|
unknown protein [Arabidopsis thaliana]
Length = 941
Score = 317 bits (811), Expect = 1e-84
Identities = 194/544 (35%), Positives = 270/544 (48%), Gaps = 69/544 (12%)
Query: 212 KGSDNDCSELDSDHPFNPEILENSSLK---RASTGKGNLKERKSQFRSESSASETDKPTR 268
KG + HP E SLK R S +LK+ + + ++S + +
Sbjct: 429 KGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKKLKLDSH 488
Query: 269 DLKRKKYLTKGDDHIQHVSTHHSKLVDSHCGLDLKSGKEPGELLPANIPIDLNPSTS--- 325
+ K G+ + DS GK+ + +N S+S
Sbjct: 489 MISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCSTINKSSSGGS 548
Query: 326 --------------ICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDW 371
C+FCQ SE +EA+G M HY G+ V D VIHVH+ C +W
Sbjct: 549 AHLRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEW 608
Query: 372 APQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRW 431
AP VYF D T NL E+ R ++ CS CGLKGAALGCY KSCK ++HV CA + CRW
Sbjct: 609 APNVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRW 668
Query: 432 DQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHLSSQLSNPLG----------AFH 481
D K+++LCP+ ++ K P E++ K + + P L SQ G FH
Sbjct: 669 DNVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKEP-LHSQPKQVSGKANIRELHIKQFH 727
Query: 482 DDGKKVVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTH 541
KK+V S L+ EEK ++ FA G T++K W S VTH
Sbjct: 728 GFSKKLVLSCSGLTVEEK------------------TVIAEFAELSGVTISKNWDSTVTH 769
Query: 542 VIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGG 601
VIA+ + NGAC RTLK +MAIL G+W+L IDWIKACMK V EEPYEI++D G G
Sbjct: 770 VIASINENGACKRTLKFMMAILEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREG 829
Query: 602 PKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVL----TSKDKLEAK 657
P GR AL +PKLF+GLKFY GD+ +YK L+DL+ GG +L S D EA
Sbjct: 830 PYLGRQRALKKKPKLFTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEA- 888
Query: 658 RHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIA 717
+ ++V++++P + TL QR ++AE LA + ++ +W+L+SIA
Sbjct: 889 --------STIVVFSVEP-------SKKKTLTQRRSDAEALAKSARARAASSSWVLDSIA 933
Query: 718 ACKL 721
C++
Sbjct: 934 GCQI 937
Score = 84.3 bits (207), Expect = 1e-14
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 20 HFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNV 79
H +++ ELKCP+CLSL+ V L C+H+FC++C+V S + C VCK Y + +IR
Sbjct: 6 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 65
Query: 80 PFVENMVAIYRSL-DASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPN 138
P ++++V+IY+++ DAS + Q + S +Q RD+S ++KA +
Sbjct: 66 PHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQ---VRDAS---VEKAS-------D 112
Query: 139 SNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRSRVEI 187
N G + R S + K +E+++ + G +KP + RV++
Sbjct: 113 KNRQGSRKGRASKRNEYGKTKEIDVDAPGPI----VMKPSSQTKKRVQL 157
>ref|NP_193839.3| BRCT domain-containing protein / zinc finger (C3HC4-type RING finger)
family protein (BRCA1) [Arabidopsis thaliana]
Length = 1276
Score = 317 bits (811), Expect = 1e-84
Identities = 194/544 (35%), Positives = 270/544 (48%), Gaps = 69/544 (12%)
Query: 212 KGSDNDCSELDSDHPFNPEILENSSLK---RASTGKGNLKERKSQFRSESSASETDKPTR 268
KG + HP E SLK R S +LK+ + + ++S + +
Sbjct: 764 KGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKKLKLDSH 823
Query: 269 DLKRKKYLTKGDDHIQHVSTHHSKLVDSHCGLDLKSGKEPGELLPANIPIDLNPSTS--- 325
+ K G+ + DS GK+ + +N S+S
Sbjct: 824 MISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCSTINKSSSGGS 883
Query: 326 --------------ICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDW 371
C+FCQ SE +EA+G M HY G+ V D VIHVH+ C +W
Sbjct: 884 AHLRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEW 943
Query: 372 APQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRW 431
AP VYF D T NL E+ R ++ CS CGLKGAALGCY KSCK ++HV CA + CRW
Sbjct: 944 APNVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRW 1003
Query: 432 DQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHLSSQLSNPLG----------AFH 481
D K+++LCP+ ++ K P E++ K + + P L SQ G FH
Sbjct: 1004 DNVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKEP-LHSQPKQVSGKANIRELHIKQFH 1062
Query: 482 DDGKKVVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTH 541
KK+V S L+ EEK ++ FA G T++K W S VTH
Sbjct: 1063 GFSKKLVLSCSGLTVEEK------------------TVIAEFAELSGVTISKNWDSTVTH 1104
Query: 542 VIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGG 601
VIA+ + NGAC RTLK +MAIL G+W+L IDWIKACMK V EEPYEI++D G G
Sbjct: 1105 VIASINENGACKRTLKFMMAILEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREG 1164
Query: 602 PKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVL----TSKDKLEAK 657
P GR AL +PKLF+GLKFY GD+ +YK L+DL+ GG +L S D EA
Sbjct: 1165 PYLGRQRALKKKPKLFTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEA- 1223
Query: 658 RHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIA 717
+ ++V++++P + TL QR ++AE LA + ++ +W+L+SIA
Sbjct: 1224 --------STIVVFSVEP-------SKKKTLTQRRSDAEALAKSARARAASSSWVLDSIA 1268
Query: 718 ACKL 721
C++
Sbjct: 1269 GCQI 1272
Score = 84.3 bits (207), Expect = 1e-14
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 20 HFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNV 79
H +++ ELKCP+CLSL+ V L C+H+FC++C+V S + C VCK Y + +IR
Sbjct: 341 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 400
Query: 80 PFVENMVAIYRSL-DASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPN 138
P ++++V+IY+++ DAS + Q + S +Q RD+S ++KA +
Sbjct: 401 PHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQ---VRDAS---VEKAS-------D 447
Query: 139 SNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRSRVEI 187
N G + R S + K +E+++ + G +KP + RV++
Sbjct: 448 KNRQGSRKGRASKRNEYGKTKEIDVDAPGPI----VMKPSSQTKKRVQL 492
>emb|CAA17526.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7486585|pir||T04938 hypothetical protein F7J7.10 -
Arabidopsis thaliana (fragment)
Length = 1331
Score = 305 bits (780), Expect = 4e-81
Identities = 195/569 (34%), Positives = 271/569 (47%), Gaps = 94/569 (16%)
Query: 212 KGSDNDCSELDSDHPFNPEILENSSLK---RASTGKGNLKERKSQFRSESSASETDKPTR 268
KG + HP E SLK R S +LK+ + + ++S + +
Sbjct: 794 KGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKKLKLDSH 853
Query: 269 DLKRKKYLTKGDDHIQHVSTHHSKLVDSHCGLDLKSGKEPGELLPANIPIDLNPSTS--- 325
+ K G+ + DS GK+ + +N S+S
Sbjct: 854 MISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCSTINKSSSGGS 913
Query: 326 --------------ICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDW 371
C+FCQ SE +EA+G M HY G+ V D VIHVH+ C +W
Sbjct: 914 AHLRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEW 973
Query: 372 APQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRW 431
AP VYF D T NL E+ R ++ CS CGLKGAALGCY KSCK ++HV CA + CRW
Sbjct: 974 APNVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRW 1033
Query: 432 D-------------------------QEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPAS 466
D Q K+++LCP+ ++ K P E++ K + + P
Sbjct: 1034 DNVSVAYIVEALYSPLHSSFNTFSYQQVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKE 1093
Query: 467 AHLSSQLSNPLGA----------FHDDGKKVVFCGSALSDEEKGSIENLRVMAVVVSGRG 516
L SQ G FH KK+V S L+ EEK
Sbjct: 1094 P-LHSQPKQVSGKANIRELHIKQFHGFSKKLVLSCSGLTVEEK----------------- 1135
Query: 517 EVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKA 576
++ FA G T++K W S VTHVIA+ + NGAC RTLK +MAIL G+W+L IDWIKA
Sbjct: 1136 -TVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKA 1194
Query: 577 CMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDL 636
CMK V EEPYEI++D G GP GR AL +PKLF+GLKFY GD+ +YK L
Sbjct: 1195 CMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYIMGDFELAYKGYL 1254
Query: 637 EDLVEVGGGAVL----TSKDKLEAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQRL 692
+DL+ GG +L S D EA + ++V++++P + TL QR
Sbjct: 1255 QDLIVAAGGTILRRRPVSSDDNEA---------STIVVFSVEP-------SKKKTLTQRR 1298
Query: 693 NEAEDLAANTGSQVIGHTWILESIAACKL 721
++AE LA + ++ +W+L+SIA C++
Sbjct: 1299 SDAEALAKSARARAASSSWVLDSIAGCQI 1327
Score = 84.3 bits (207), Expect = 1e-14
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 20 HFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNV 79
H +++ ELKCP+CLSL+ V L C+H+FC++C+V S + C VCK Y + +IR
Sbjct: 371 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 430
Query: 80 PFVENMVAIYRSL-DASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPN 138
P ++++V+IY+++ DAS + Q + S +Q RD+S ++KA +
Sbjct: 431 PHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQ---VRDAS---VEKAS-------D 477
Query: 139 SNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRSRVEI 187
N G + R S + K +E+++ + G +KP + RV++
Sbjct: 478 KNRQGSRKGRASKRNEYGKTKEIDVDAPGPI----VMKPSSQTKKRVQL 522
>emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
gi|5262797|emb|CAB45902.1| putative protein (fragment)
[Arabidopsis thaliana] gi|7486979|pir||T10649
hypothetical protein T13K14.230 - Arabidopsis thaliana
(fragment) gi|25407578|pir||A85240 hypothetical protein
AT4g21070 [imported] - Arabidopsis thaliana
Length = 1495
Score = 281 bits (720), Expect = 4e-74
Identities = 175/492 (35%), Positives = 233/492 (46%), Gaps = 74/492 (15%)
Query: 212 KGSDNDCSELDSDHPFNPEILENSSLK---RASTGKGNLKERKSQFRSESSASETDKPTR 268
KG + HP E SLK R S +LK+ + + ++S + +
Sbjct: 1011 KGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKKLKLDSH 1070
Query: 269 DLKRKKYLTKGDDHIQHVSTHHSKLVDSHCGLDLKSGKEPGELLPANIPIDLNPSTS--- 325
+ K G+ + DS GK+ + +N S+S
Sbjct: 1071 MISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCSTINKSSSGGS 1130
Query: 326 --------------ICSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDW 371
C+FCQ SE +EA+G M HY G+ V D VIHVH+ C +W
Sbjct: 1131 AHLRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEW 1190
Query: 372 APQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRW 431
AP VYF D T NL E+ R ++ CS CGLKGAALGCY KSCK ++HV CA + CRW
Sbjct: 1191 APNVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRW 1250
Query: 432 D-------------------------QEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPAS 466
D Q K+++LCP+ ++ K P E++ K + + P
Sbjct: 1251 DNVSVAYIVEALYSPLHSSFNTFSYQQVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKE 1310
Query: 467 AHLSSQLSNPLGA----------FHDDGKKVVFCGSALSDEEKGSIENLRVMAVVVSGRG 516
L SQ G FH KK+V S L+ EEK
Sbjct: 1311 P-LHSQPKQVSGKANIRELHIKQFHGFSKKLVLSCSGLTVEEK----------------- 1352
Query: 517 EVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKA 576
++ FA G T++K W S VTHVIA+ + NGAC RTLK +MAIL G+W+L IDWIKA
Sbjct: 1353 -TVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKA 1411
Query: 577 CMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDL 636
CMK V EEPYEI++D G GP GR AL +PKLF+GLKFY GD+ +YK L
Sbjct: 1412 CMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYIMGDFELAYKGYL 1471
Query: 637 EDLVEVGGGAVL 648
+DL+ GG +L
Sbjct: 1472 QDLIVAAGGTIL 1483
Score = 84.3 bits (207), Expect = 1e-14
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 20 HFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNV 79
H +++ ELKCP+CLSL+ V L C+H+FC++C+V S + C VCK Y + +IR
Sbjct: 588 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 647
Query: 80 PFVENMVAIYRSL-DASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPN 138
P ++++V+IY+++ DAS + Q + S +Q RD+S ++KA +
Sbjct: 648 PHMDSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQ---VRDAS---VEKAS-------D 694
Query: 139 SNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPYPMQRSRVEI 187
N G + R S + K +E+++ + G +KP + RV++
Sbjct: 695 KNRQGSRKGRASKRNEYGKTKEIDVDAPGPI----VMKPSSQTKKRVQL 739
>emb|CAG31752.1| hypothetical protein [Gallus gallus]
Length = 750
Score = 93.6 bits (231), Expect = 2e-17
Identities = 55/149 (36%), Positives = 82/149 (54%), Gaps = 10/149 (6%)
Query: 505 LRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILN 564
L ++ +S + + LL A+ + A + S VTHV+ + T+K +MA+L+
Sbjct: 544 LGILGSGLSSKQQKLLNKLATVLKARRCTEFNSTVTHVVVP---DVPMPSTVKCMMAVLS 600
Query: 565 GRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYF 624
G WVLK +W++AC++ +EE YEI GGP+ GRL+ PKLF G FYF
Sbjct: 601 GCWVLKFEWVQACLQSTVREQEEKYEIQ-------GGPQRGRLNREQLLPKLFDGCYFYF 653
Query: 625 SGDYVSSYKEDLEDLVEVGGGAVLTSKDK 653
G + S K DL +LV+ GGG +L + K
Sbjct: 654 LGSFNSHQKSDLVELVKAGGGQILVRQPK 682
Score = 37.0 bits (84), Expect = 2.3
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 13 LMNPWM---LHFQKLALELKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCK 68
+ PW ++L L C C + +PV L C+H+FC SC+ D G C VC
Sbjct: 1 MARPWAHTRAALERLERALSCSRCAGVLREPVSLGGCEHVFCLSCMGDH--VGKGCPVCH 58
Query: 69 TKYAQTDIRNVPFVENMV----AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSS 122
D++ +++MV + LDA SM +S C F ++S
Sbjct: 59 VPAWVQDMQINRQLDDMVQLCGKLRHLLDAGTSDSM-------ESTPTPMCSDFGENS 109
>ref|XP_421866.1| PREDICTED: similar to BRCA1-associated RING domain protein 1 (BARD-1)
[Gallus gallus]
Length = 1083
Score = 93.6 bits (231), Expect = 2e-17
Identities = 55/149 (36%), Positives = 82/149 (54%), Gaps = 10/149 (6%)
Query: 505 LRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILN 564
L ++ +S + + LL A+ + A + S VTHV+ + T+K +MA+L+
Sbjct: 867 LGILGSGLSSKQQKLLNKLATVLKARRCTEFNSTVTHVVVP---DVPMPSTVKCMMAVLS 923
Query: 565 GRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYF 624
G WVLK +W++AC++ +EE YEI GGP+ GRL+ PKLF G FYF
Sbjct: 924 GCWVLKFEWVQACLQSTVREQEEKYEIQ-------GGPQRGRLNREQLLPKLFDGCYFYF 976
Query: 625 SGDYVSSYKEDLEDLVEVGGGAVLTSKDK 653
G + S K DL +LV+ GGG +L + K
Sbjct: 977 LGSFNSHQKSDLVELVKAGGGQILVRQPK 1005
Score = 41.6 bits (96), Expect = 0.092
Identities = 34/126 (26%), Positives = 53/126 (41%), Gaps = 17/126 (13%)
Query: 5 GKPNNKSKLMNPWM---LHFQKLALELKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLS 60
G+P + + PW ++L L C C + +PV L C+H+FC SC+ D
Sbjct: 274 GQPGPAASMARPWAHTRAALERLERALSCSRCAGVLREPVSLGGCEHVFCLSCMGDH--V 331
Query: 61 GSECAVCKTKYAQTDIRNVPFVENMV----AIYRSLDASFCASMLQQRSNDDSRVLQQCQ 116
G C VC D++ +++MV + LDA SM +S C
Sbjct: 332 GKGCPVCHVPAWVQDMQINRQLDDMVQLCGKLRHLLDAGTSDSM-------ESTPTPMCS 384
Query: 117 TFRDSS 122
F ++S
Sbjct: 385 DFGENS 390
>gb|AAR89523.1| breast cancer 1 [Tetraodon nigroviridis]
Length = 1267
Score = 92.8 bits (229), Expect = 3e-17
Identities = 80/272 (29%), Positives = 121/272 (44%), Gaps = 38/272 (13%)
Query: 462 EHPASAHLSSQLSNPLGAFHDDGKKVVFCGSALS---DEEKGSIENLRVMA---VVVSGR 515
+H + L+S++SN +G K + GS D+E + E R +A +V SG
Sbjct: 1011 KHSSITELNSRISNTVG-LSSAAKTLKXDGSPSDGHEDKENNTPERARSLARMLLVTSGL 1069
Query: 516 G---EVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKID 572
G ++ + FA ++GATV T +VTHV+ TD C RTLK + I +WV+
Sbjct: 1070 GPSQQITVKKFAKRIGATVVSQVTPEVTHVVMHTDEQLVCERTLKYFLGIAGRKWVVSFQ 1129
Query: 573 WIKACMKVMSLVEEEPYEISLD--NQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVS 630
WI C+K L+ E +E+ D N + GP R A A+ L G F G +
Sbjct: 1130 WISECIKQKKLLNETLFEVRGDVVNGFDHQGPMKAR--ATADNNLLMKGYSICFQGPFTD 1187
Query: 631 SYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNLLIVYNLDPPQGSKLGDEVSTLWQ 690
++E +VE G V+ L+ KR TS+ LIV GS+ VS
Sbjct: 1188 MTTAEMELMVEXCGATVVQDPLLLDGKR-----TSHQLIVVQ----SGSESSRSVS---- 1234
Query: 691 RLNEAEDLAANTGSQVIGHTWILESIAACKLQ 722
+ V+ W+L+S+A +Q
Sbjct: 1235 -----------GKATVVTRGWLLDSVATYTIQ 1255
Score = 51.2 bits (121), Expect = 1e-04
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 28 LKCPLCLSLFEKPVLLPCDHLFCDSCLV----DSSLSGSECAVCKTKYAQTDIRNVPFVE 83
L+CP+CL L +PV CDH FC C++ ++ + + C VCK+K + ++ P +
Sbjct: 20 LQCPICLDLMSEPVSTKCDHQFCRFCMLKLLSNTKQNKANCPVCKSKITKRSLQESPGFQ 79
Query: 84 NMVA 87
+V+
Sbjct: 80 RLVS 83
>ref|NP_072144.1| BRCA1 associated RING domain 1 [Rattus norvegicus]
gi|13626132|sp|Q9QZH2|BARD1_RAT BRCA1-associated RING
domain protein 1 (BARD-1) gi|6003574|gb|AAF00500.1|
BRCA1-associated RING domain protein 1 [Rattus
norvegicus]
Length = 768
Score = 90.5 bits (223), Expect = 2e-16
Identities = 61/213 (28%), Positives = 97/213 (44%), Gaps = 16/213 (7%)
Query: 512 VSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKI 571
+S + + LL + + A + + VTHVI + TLK ++ ILNG WVLK
Sbjct: 568 LSSQQQKLLSKLETVLKAKKCAEFDNTVTHVIVPDEE---AQSTLKCMLGILNGCWVLKF 624
Query: 572 DWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSS 631
DW+KAC+ +EE YE+ GGP+ RL+ PKLF G F+ G++
Sbjct: 625 DWVKACLDSQEREQEEKYEVP-------GGPQRSRLNREQLLPKLFDGCYFFLGGNFKHH 677
Query: 632 YKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNL-LIVYNLDPPQGSKLGDEVSTLWQ 690
KEDL L+ GG +L+ K K ++ +VT + + Y+ P + +
Sbjct: 678 PKEDLLKLIAAAGGRILSRKPKPDS-----DVTQTINTVAYHAKPDSDQRFCTQYIVYED 732
Query: 691 RLNEAEDLAANTGSQVIGHTWILESIAACKLQP 723
N + + TW++ + A +L P
Sbjct: 733 LFNCHPERVRQGKVWMAPSTWLISCVMAFELLP 765
Score = 47.4 bits (111), Expect = 0.002
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 28 LKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMV 86
L+C C ++ +PV L C+H+FC C+ S GS C VC T D++ +++M+
Sbjct: 42 LRCSRCANILREPVCLGGCEHIFCSGCI--SDCVGSGCPVCHTPAWILDLKINRQLDSMI 99
Query: 87 AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQS--SPNSNGFGV 144
+Y L ++L DS+ T R S + + ++ N + SP S
Sbjct: 100 QLYSKLQ-----NLLHDNKGSDSK----DDTSRASLFGDAERKKNSVKMWFSPRSKKIRC 150
Query: 145 GENRKSMITMHVKPEE 160
N+ S+ T K ++
Sbjct: 151 VVNKVSVQTQPQKAKD 166
>gb|AAT35115.1| BRCA1-associated RING domain protein 1 beta isoform [Rattus
norvegicus]
Length = 602
Score = 90.5 bits (223), Expect = 2e-16
Identities = 61/213 (28%), Positives = 97/213 (44%), Gaps = 16/213 (7%)
Query: 512 VSGRGEVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKI 571
+S + + LL + + A + + VTHVI + TLK ++ ILNG WVLK
Sbjct: 402 LSSQQQKLLSKLETVLKAKKCAEFDNTVTHVIVPDEE---AQSTLKCMLGILNGCWVLKF 458
Query: 572 DWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSS 631
DW+KAC+ +EE YE+ GGP+ RL+ PKLF G F+ G++
Sbjct: 459 DWVKACLDSQEREQEEKYEVP-------GGPQRSRLNREQLLPKLFDGCYFFLGGNFKHH 511
Query: 632 YKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNL-LIVYNLDPPQGSKLGDEVSTLWQ 690
KEDL L+ GG +L+ K K ++ +VT + + Y+ P + +
Sbjct: 512 PKEDLLKLIAAAGGRILSRKPKPDS-----DVTQTINTVAYHAKPDSDQRFCTQYIVYED 566
Query: 691 RLNEAEDLAANTGSQVIGHTWILESIAACKLQP 723
N + + TW++ + A +L P
Sbjct: 567 LFNCHPERVRQGKVWMAPSTWLISCVMAFELLP 599
>ref|NP_031551.1| BRCA1 associated RING domain 1 [Mus musculus]
gi|13123974|sp|O70445|BARD1_MOUSE BRCA1-associated RING
domain protein 1 (BARD-1) gi|3170563|gb|AAC18095.1|
BRCA1-associated RING domain protein; BARD1 [Mus
musculus]
Length = 765
Score = 86.7 bits (213), Expect = 3e-15
Identities = 64/238 (26%), Positives = 103/238 (42%), Gaps = 34/238 (14%)
Query: 487 VVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAAT 546
+VF GS LS +++ + L + + A + S VTHVI
Sbjct: 558 LVFIGSGLSSQQQKMLSKLETV------------------LKAKKCMEFDSTVTHVIVPD 599
Query: 547 DANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGR 606
+ TLK ++ IL+G W+LK DW+KAC+ +EE YE+ GGP+ R
Sbjct: 600 EE---AQSTLKCMLGILSGCWILKFDWVKACLDSKVREQEEKYEVP-------GGPQRSR 649
Query: 607 LSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSN 666
L+ PKLF G F+ G++ ++DL L+ GG VL+ K K ++ +VT
Sbjct: 650 LNREQLLPKLFDGCYFFLGGNFKHHPRDDLLKLIAAAGGKVLSRKPKPDS-----DVTQT 704
Query: 667 L-LIVYNLDPPQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQP 723
+ + Y+ P + + N + + TW++ I A +L P
Sbjct: 705 INTVAYHAKPESDQRFCTQYIVYEDLFNCHPERVRQGKVWMAPSTWLISCIMAFELLP 762
Score = 44.3 bits (103), Expect = 0.014
Identities = 39/132 (29%), Positives = 57/132 (42%), Gaps = 33/132 (25%)
Query: 28 LKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMV 86
L+C C ++ ++PV L C+H+FC C+ S GS C VC T D++
Sbjct: 42 LRCSRCANILKEPVCLGGCEHIFCSGCI--SDCVGSGCPVCYTPAWILDLK--------- 90
Query: 87 AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGE 146
I R LD SM+Q S ++ + N DN S++S FG E
Sbjct: 91 -INRQLD-----SMIQLSSK-----------LQNLLHDNKDSKDNTSRASL----FGDAE 129
Query: 147 NRKSMITMHVKP 158
+K+ I M P
Sbjct: 130 RKKNSIKMWFSP 141
>gb|AAX93130.1| unknown [Homo sapiens]
Length = 777
Score = 86.3 bits (212), Expect = 3e-15
Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 487 VVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAAT 546
+V GS LS E++ + L AV++ + T+F S VTHV+
Sbjct: 570 LVLIGSGLSSEQQKMLSEL---AVILKAK--------------KYTEF-DSTVTHVVVPG 611
Query: 547 DANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGR 606
DA TLK ++ ILNG W+LK +W+KAC++ +EE YEI GP+ R
Sbjct: 612 DA---VQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIP-------EGPRRSR 661
Query: 607 LSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDK 653
L+ PKLF G FY G + K++L LV GGG +L+ K K
Sbjct: 662 LNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPK 708
Score = 43.9 bits (102), Expect = 0.019
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 31/132 (23%)
Query: 28 LKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMV 86
L+C C ++ +PV L C+H+FC +C+ S G+ C VC T D++
Sbjct: 48 LRCSRCTNILREPVCLGGCEHIFCSNCV--SDCIGTGCPVCYTPAWIQDLK--------- 96
Query: 87 AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGE 146
I R LD+ ++Q C R+ + N + + + P + F
Sbjct: 97 -INRQLDS----------------MIQLCSKLRNLLHDN--ELSDLKEDKPRKSLFNDAG 137
Query: 147 NRKSMITMHVKP 158
N+K+ I M P
Sbjct: 138 NKKNSIKMWFSP 149
>dbj|BAD97129.1| BRCA1 associated RING domain 1 variant [Homo sapiens]
Length = 777
Score = 86.3 bits (212), Expect = 3e-15
Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 487 VVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAAT 546
+V GS LS E++ + L AV++ + T+F S VTHV+
Sbjct: 570 LVLIGSGLSSEQQKMLSGL---AVILKAK--------------KYTEF-DSTVTHVVVPG 611
Query: 547 DANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGR 606
DA TLK ++ ILNG W+LK +W+KAC++ +EE YEI GP+ R
Sbjct: 612 DA---VQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIP-------EGPRRSR 661
Query: 607 LSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDK 653
L+ PKLF G FY G + K++L LV GGG +L+ K K
Sbjct: 662 LNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPK 708
Score = 43.5 bits (101), Expect = 0.024
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 31/132 (23%)
Query: 28 LKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMV 86
L+C C ++ +PV L C+H+FC +C+ S G+ C VC T D++
Sbjct: 48 LRCSRCTNILREPVCLGGCEHIFCSNCV--SDYIGTGCPVCYTPAWIQDLK--------- 96
Query: 87 AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGE 146
I R LD+ ++Q C R+ + N + + + P F
Sbjct: 97 -INRQLDS----------------MIQLCSKLRNLLHDN--ELSDLKEDKPRKGLFNDAG 137
Query: 147 NRKSMITMHVKP 158
N+K+ I M P
Sbjct: 138 NKKNSIKMWFSP 149
>ref|NP_000456.1| BRCA1 associated RING domain 1 [Homo sapiens]
gi|13123980|sp|Q99728|BARD1_HUMAN BRCA1-associated RING
domain protein 1 (BARD-1) gi|1710175|gb|AAB38316.1|
BRCA1-associated RING domain protein [Homo sapiens]
Length = 777
Score = 86.3 bits (212), Expect = 3e-15
Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 487 VVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAAT 546
+V GS LS E++ + L AV++ + T+F S VTHV+
Sbjct: 570 LVLIGSGLSSEQQKMLSEL---AVILKAK--------------KYTEF-DSTVTHVVVPG 611
Query: 547 DANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGR 606
DA TLK ++ ILNG W+LK +W+KAC++ +EE YEI GP+ R
Sbjct: 612 DA---VQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIP-------EGPRRSR 661
Query: 607 LSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDK 653
L+ PKLF G FY G + K++L LV GGG +L+ K K
Sbjct: 662 LNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPK 708
Score = 43.9 bits (102), Expect = 0.019
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 31/132 (23%)
Query: 28 LKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMV 86
L+C C ++ +PV L C+H+FC +C+ S G+ C VC T D++
Sbjct: 48 LRCSRCTNILREPVCLGGCEHIFCSNCV--SDCIGTGCPVCYTPAWIQDLK--------- 96
Query: 87 AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGE 146
I R LD+ ++Q C R+ + N + + + P + F
Sbjct: 97 -INRQLDS----------------MIQLCSKLRNLLHDN--ELSDLKEDKPRKSLFNDAG 137
Query: 147 NRKSMITMHVKP 158
N+K+ I M P
Sbjct: 138 NKKNSIKMWFSP 149
>gb|AAB99978.1| BRCA1-associated RING domain protein [Homo sapiens]
Length = 777
Score = 86.3 bits (212), Expect = 3e-15
Identities = 59/167 (35%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 487 VVFCGSALSDEEKGSIENLRVMAVVVSGRGEVLLINFASKVGATVTKFWTSDVTHVIAAT 546
+V GS LS E++ + L AV++ + T+F S VTHV+
Sbjct: 570 LVLIGSGLSSEQQKMLSEL---AVILKAK--------------KYTEF-DSTVTHVVVPG 611
Query: 547 DANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGR 606
DA TLK ++ ILNG W+LK +W+KAC++ +EE YEI GP+ R
Sbjct: 612 DA---VQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIP-------EGPRRSR 661
Query: 607 LSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDK 653
L+ PKLF G FY G + K++L LV GGG +L+ K K
Sbjct: 662 LNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPK 708
Score = 43.9 bits (102), Expect = 0.019
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 31/132 (23%)
Query: 28 LKCPLCLSLFEKPVLLP-CDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIRNVPFVENMV 86
L+C C ++ +PV L C+H+FC +C+ S G+ C VC T D++
Sbjct: 48 LRCSRCTNILREPVCLGGCEHIFCSNCV--SDCIGTGCPVCYTPAWIQDLK--------- 96
Query: 87 AIYRSLDASFCASMLQQRSNDDSRVLQQCQTFRDSSYSNIKKADNFSQSSPNSNGFGVGE 146
I R LD+ ++Q C R+ + N + + + P + F
Sbjct: 97 -INRQLDS----------------MIQLCSKLRNLLHDN--ELSDLKEDKPRKSLFNDAG 137
Query: 147 NRKSMITMHVKP 158
N+K+ I M P
Sbjct: 138 NKKNSIKMWFSP 149
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,250,887,043
Number of Sequences: 2540612
Number of extensions: 52905733
Number of successful extensions: 135572
Number of sequences better than 10.0: 2671
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 1235
Number of HSP's that attempted gapping in prelim test: 132723
Number of HSP's gapped (non-prelim): 3582
length of query: 726
length of database: 863,360,394
effective HSP length: 136
effective length of query: 590
effective length of database: 517,837,162
effective search space: 305523925580
effective search space used: 305523925580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0082b.8