BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0074.9
(351 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAG82565.1| unnamed protein product [Yarrowia lipolytica CLI... 54 9e-06
ref|XP_393352.1| PREDICTED: similar to ENSANGP00000010223 [Apis ... 52 3e-05
ref|XP_318826.2| ENSANGP00000010223 [Anopheles gambiae str. PEST... 51 6e-05
gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster... 50 8e-05
dbj|BAC03903.1| unnamed protein product [Homo sapiens] 49 3e-04
ref|XP_508706.1| PREDICTED: similar to FLJ10251 protein [Pan tro... 48 4e-04
emb|CAC42098.1| RBD protein [Chironomus tentans] 48 4e-04
gb|AAH46045.1| Zgc:56283 [Danio rerio] gi|47087067|ref|NP_998547... 48 4e-04
gb|AAP35914.1| splicing factor, arginine/serine-rich 2 [Homo sap... 48 5e-04
emb|CAD98563.1| splicing factor, possible [Cryptosporidium parvum] 48 5e-04
emb|CAA22531.1| SPBC660.11 [Schizosaccharomyces pombe] gi|191118... 48 5e-04
dbj|BAD96972.1| splicing factor, arginine/serine-rich 2 variant ... 48 5e-04
dbj|BAC87434.1| unnamed protein product [Homo sapiens] 48 5e-04
gb|EAK90144.1| RRM domain containing protein; T22E16.120 Sc35-li... 48 5e-04
dbj|BAD74033.1| arginine/serine-rich 2 splicing factor [Pan trog... 48 5e-04
gb|AAF53192.1| CG5442-PB, isoform B [Drosophila melanogaster] gi... 48 5e-04
ref|XP_667894.1| splicing factor [Cryptosporidium hominis] gi|54... 48 5e-04
gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio] ... 48 5e-04
gb|EAL33619.1| GA18884-PA [Drosophila pseudoobscura] 48 5e-04
gb|AAG02568.1| single-stranded TG1-3 binding protein [Schizosacc... 48 5e-04
>emb|CAG82565.1| unnamed protein product [Yarrowia lipolytica CLIB99]
gi|50545625|ref|XP_500351.1| hypothetical protein
[Yarrowia lipolytica]
Length = 589
Score = 53.5 bits (127), Expect = 9e-06
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
LFV GL R+T +R FERFG V S+ +P + R + FGFV F+ RD + A+ +L
Sbjct: 192 LFVRGLSRETTEEALRAEFERFGAVTSLLLPLD-ESHRAKGFGFVNFEEHRDAVTAVAAL 250
Query: 89 HGTRLNSFFLSINPAR 104
G L +S++ A+
Sbjct: 251 DGAELCGARISVSRAQ 266
>ref|XP_393352.1| PREDICTED: similar to ENSANGP00000010223 [Apis mellifera]
Length = 232
Score = 52.0 bits (123), Expect = 3e-05
Identities = 48/213 (22%), Positives = 88/213 (40%), Gaps = 34/213 (15%)
Query: 10 PPPRWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREK 69
PPPR + + L VD L T +R++FER G V +++P+
Sbjct: 6 PPPR---------IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRG 56
Query: 70 FGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIR 129
F FV F KRD A+ ++ G L+ L + AR+ P H R++ R
Sbjct: 57 FAFVRFYDKRDAEDALDAMDGRLLDGRELRVQMARY-------GRPTSPHRSRGSRRRGR 109
Query: 130 QEWRIKHRVGA-----------------PFSGTGGFSQESQKVWRVKKSTR-KSPEKKVE 171
R + R + +S + S+ K R K +R KSP+++ +
Sbjct: 110 SRSRSRDRRRSRSRSRSRSRSRDRDRRRSYSRSRSRSRSDSKSSRGKSRSRSKSPDRQKD 169
Query: 172 EQERSGMTMNQVRVGLNMDLSRMAIASLTEVLT 204
+ +S + + R ++ + + + L+++L+
Sbjct: 170 SRSKSRLLVYWTREDFHLQVFIIILTLLSDILS 202
>ref|XP_318826.2| ENSANGP00000010223 [Anopheles gambiae str. PEST]
gi|55235949|gb|EAA14228.2| ENSANGP00000010223 [Anopheles
gambiae str. PEST]
Length = 172
Score = 50.8 bits (120), Expect = 6e-05
Identities = 44/170 (25%), Positives = 75/170 (43%), Gaps = 16/170 (9%)
Query: 1 MRPTGSARAPPPRWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPK 60
++ +G AR PPPR + I L VD L T +R++FER G V +++P+
Sbjct: 6 IKMSGYAR-PPPR---------IDGMISLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPR 55
Query: 61 TIKRVRREKFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHE 120
F FV F KRD A+ ++ G L+ L + AR+ + P ++
Sbjct: 56 DRHTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARY----GRPTSPQRRGN 111
Query: 121 ELPGRK--KIRQEWRIKHRVGAPFSGTGGFSQESQKVWRVKKSTRKSPEK 168
GR+ + R+ R + R +P +S+ + R + ++ S K
Sbjct: 112 RYNGRERGRSRERHRRRSRSRSPEHRRRSYSRSKSRTPRSRSGSKSSRGK 161
>gb|AAB07067.1| RNA-binding protein lark [Drosophila melanogaster]
gi|23094011|gb|AAN12056.1| CG8597-PE, isoform E
[Drosophila melanogaster] gi|23094010|gb|AAN12055.1|
CG8597-PD, isoform D [Drosophila melanogaster]
gi|23094009|gb|AAN12054.1| CG8597-PC, isoform C
[Drosophila melanogaster] gi|23094008|gb|AAN12053.1|
CG8597-PB, isoform B [Drosophila melanogaster]
gi|7295256|gb|AAF50578.1| CG8597-PA, isoform A
[Drosophila melanogaster] gi|24659981|ref|NP_729240.1|
CG8597-PE, isoform E [Drosophila melanogaster]
gi|24659976|ref|NP_729239.1| CG8597-PD, isoform D
[Drosophila melanogaster] gi|24659971|ref|NP_729238.1|
CG8597-PC, isoform C [Drosophila melanogaster]
gi|24659966|ref|NP_729237.1| CG8597-PB, isoform B
[Drosophila melanogaster] gi|17647581|ref|NP_523957.1|
CG8597-PA, isoform A [Drosophila melanogaster]
gi|16769574|gb|AAL29006.1| LD40792p [Drosophila
melanogaster] gi|62510825|sp|Q94901|LARK_DROME
RNA-binding protein lark
Length = 352
Score = 50.4 bits (119), Expect = 8e-05
Identities = 26/77 (33%), Positives = 46/77 (58%), Gaps = 8/77 (10%)
Query: 28 RLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRS 87
+LF+ LD T+ +++R LFE++GTVV V K +GFV ++++ G A+++
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVK--------NYGFVHMETEQQGRDAIQN 59
Query: 88 LHGTRLNSFFLSINPAR 104
L+G LN F + + A+
Sbjct: 60 LNGYTLNEFAIKVEAAK 76
>dbj|BAC03903.1| unnamed protein product [Homo sapiens]
Length = 201
Score = 48.5 bits (114), Expect = 3e-04
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L VD L T +R++FE++G V V++P+ F FV F KRD AM ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 89 HGTRLNSFFLSINPARF--VDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRVGAPFSGTG 146
G L+ L + AR R+ + +P ++ R + R R ++ S T
Sbjct: 76 DGAVLDGRELRVQMARCGGYGRRSR-SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTR 134
Query: 147 GFSQESQKVWRVKKSTRKS 165
S+ + K ++S KS
Sbjct: 135 SRSRSTSKSRSARRSKSKS 153
>ref|XP_508706.1| PREDICTED: similar to FLJ10251 protein [Pan troglodytes]
Length = 1002
Score = 48.1 bits (113), Expect = 4e-04
Identities = 35/121 (28%), Positives = 53/121 (42%), Gaps = 4/121 (3%)
Query: 7 ARAPPPRWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVR 66
ARA SC + I L VD L T +R++FE++G V V++P+
Sbjct: 809 ARAALGAMSCGRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA 868
Query: 67 REKFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRK 126
F FV F +RD A ++ G L+ L + AR+ R + P + E GR
Sbjct: 869 PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR----DLPRSRQGEPRGRS 924
Query: 127 K 127
+
Sbjct: 925 R 925
>emb|CAC42098.1| RBD protein [Chironomus tentans]
Length = 849
Score = 48.1 bits (113), Expect = 4e-04
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Query: 13 RWSCHERSEVAEENI----RLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRRE 68
RW E EE+I +LF L V+ +FE++G VV V VP + +
Sbjct: 299 RWQEQEEKLKGEEDICESGKLFFRNLPYTVTEDDVQTVFEKYGNVVEVNVPIDPTTRKIK 358
Query: 69 KFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKI 128
FG V F + + A L+GT + + P + D+ K ++ RK++
Sbjct: 359 GFGTVTFLMPENAVQAYNELNGTMFHGRMFHLLPGKSNDKTEADESDPKNFKD-KRRKEL 417
Query: 129 RQEWRIKHRVGAPFSGTGGFSQESQKVWRVKK 160
++ H F GT ++ KV+ K
Sbjct: 418 KKTASSAHNWNTLFMGTNAVAEIISKVYGKSK 449
Score = 39.3 bits (90), Expect = 0.18
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 24 EENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREK------FGFVLFQS 77
E N LF+ L++DT +R++F+ GT+ S+ + K K EK +GF+ F+
Sbjct: 613 EPNTTLFIKNLNKDTVEETIREIFKNIGTIRSIQIAKK-KSTDDEKKLIPLGYGFIQFKQ 671
Query: 78 KRDGIAAMRSLHGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHR 137
A++++ ++ + + + DR N PA + KK +I R
Sbjct: 672 ASAADKALKTMQHKEIDGIKIELKRS---DRTL--NTPAHVSRKKTDNKKQEGSTKIMVR 726
Query: 138 VGAPFSGTGGFSQESQKVWRVKKSTRKSPEKKVEEQER 175
PF ++ +V+ K+ R P+K +Q R
Sbjct: 727 -NIPFQANANEIRQLFQVFGELKAVR-LPKKPGIDQHR 762
Score = 36.6 bits (83), Expect = 1.2
Identities = 19/66 (28%), Positives = 36/66 (53%)
Query: 24 EENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIA 83
E + ++ V + +++R+LF+ FG + +V +PK + FGF+ F +K D +
Sbjct: 718 EGSTKIMVRNIPFQANANEIRQLFQVFGELKAVRLPKKPGIDQHRGFGFIDFVTKSDAKS 777
Query: 84 AMRSLH 89
A +LH
Sbjct: 778 AFDALH 783
>gb|AAH46045.1| Zgc:56283 [Danio rerio] gi|47087067|ref|NP_998547.1| zgc:56283
[Danio rerio]
Length = 225
Score = 48.1 bits (113), Expect = 4e-04
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L VD L T +R++FE++G V V++P+ F FV F KRD AM ++
Sbjct: 16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 89 HGTRLNSFFLSINPARF---VDRKY-KWNPPAKQHEELPGRKKIRQEWRIKH 136
G L+ L + AR+ D Y + P +++ R + R R KH
Sbjct: 76 DGALLDGRELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRRSRSRSPRRRKH 127
>gb|AAP35914.1| splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|6755478|ref|NP_035488.1| splicing factor,
arginine/serine-rich 2 [Mus musculus]
gi|455419|emb|CAA53383.1| PR264/SC35 [Homo sapiens]
gi|35597|emb|CAA44307.1| PR 264 [Homo sapiens]
gi|61359244|gb|AAX41688.1| splicing factor
arginine/serine-rich 2 [synthetic construct]
gi|61821161|ref|XP_585074.1| PREDICTED: similar to
Splicing factor, arginine/serine-rich 2 (Splicing factor
SC35) (SC-35) (Splicing component, 35 kDa) [Bos taurus]
gi|67969334|dbj|BAE01019.1| unnamed protein product
[Macaca fascicularis] gi|47123339|gb|AAH70086.1|
Splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|47271443|ref|NP_003007.2| splicing factor,
arginine/serine-rich 2 [Homo sapiens]
gi|12654915|gb|AAH01303.1| SFRS2 protein [Homo sapiens]
gi|12653143|gb|AAH00339.1| SFRS2 protein [Homo sapiens]
gi|60416437|sp|Q01130|SFRS2_HUMAN Splicing factor,
arginine/serine-rich 2 (Splicing factor SC35) (SC-35)
(Splicing component, 35 kDa) (PR264 protein)
gi|18280933|sp|Q62093|SFRS2_MOUSE Splicing factor,
arginine/serine-rich 2 (Splicing factor SC35) (SC-35)
(Splicing component, 35 kDa) (PR264 protein)
gi|52783335|sp|Q6PDU1|SFRS2_RAT Splicing factor,
arginine/serine-rich 2 (Splicing factor SC35) (SC-35)
(Splicing component, 35 kDa) gi|3335676|gb|AAC71000.1|
splicing factor SC35 [Mus musculus]
gi|57528425|ref|NP_001009720.1| hypothetical protein
LOC494445 [Rattus norvegicus] gi|539663|pir||A42701
splicing factor SFRS2 - human
gi|26352962|dbj|BAC40111.1| unnamed protein product [Mus
musculus] gi|26351947|dbj|BAC39610.1| unnamed protein
product [Mus musculus] gi|13529557|gb|AAH05493.1| Sfrs2
protein [Mus musculus] gi|34849641|gb|AAH58508.1|
Similar to splicing factor, arginine/serine-rich 2
[Rattus norvegicus] gi|228504|prf||1805195B RNA-binding
protein PR264
Length = 221
Score = 47.8 bits (112), Expect = 5e-04
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L VD L T +R++FE++G V V++P+ F FV F KRD AM ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 89 HGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRVGAP--FSGTG 146
G L+ L + AR+ PP H R G P G G
Sbjct: 76 DGAVLDGRELRVQMARY------GRPPDSHHS----------------RRGPPPRRYGGG 113
Query: 147 GFSQESQKVWRVKKSTRKS 165
G+ + S+ R ++S +S
Sbjct: 114 GYGRRSRSPRRRRRSRSRS 132
>emb|CAD98563.1| splicing factor, possible [Cryptosporidium parvum]
Length = 330
Score = 47.8 bits (112), Expect = 5e-04
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L + L DT S VR+ FERFG + V++P + R FGFV + + D AA+ +
Sbjct: 15 LLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDARAALEKM 74
Query: 89 HGTRLNSFFLSINPARFVDRKYKWNPPAKQHEE 121
G L+ +++ A ++ + +P + +H E
Sbjct: 75 DGATLDGVTINVTFA----QEGRKSPESMRHRE 103
>emb|CAA22531.1| SPBC660.11 [Schizosaccharomyces pombe] gi|19111882|ref|NP_595090.1|
hypothetical protein SPBC660.11 [Schizosaccharomyces
pombe 972h-] gi|51702149|sp|Q9HEQ9|TCG1_SCHPO
Single-stranded TG1-3 binding protein
Length = 348
Score = 47.8 bits (112), Expect = 5e-04
Identities = 36/108 (33%), Positives = 53/108 (48%), Gaps = 14/108 (12%)
Query: 25 ENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRR------EKFGFVLFQSK 78
++ R+FV L TK S++R LFE GTV V +P +RVRR FV F ++
Sbjct: 42 DDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIP--FRRVRRGTRLVPSGIAFVTFNNQ 99
Query: 79 RDGIAAMRSLHGTRLNSFFLSINPARFV------DRKYKWNPPAKQHE 120
D A+ +L+G L+ + + AR V DRK N ++ E
Sbjct: 100 EDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPE 147
>dbj|BAD96972.1| splicing factor, arginine/serine-rich 2 variant [Homo sapiens]
Length = 221
Score = 47.8 bits (112), Expect = 5e-04
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L VD L T +R++FE++G V V++P+ F FV F KRD AM ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 89 HGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRVGAP--FSGTG 146
G L+ L + AR+ PP H R G P G G
Sbjct: 76 DGAVLDGRELRVQMARY------GRPPDSHHS----------------RRGPPPRRYGGG 113
Query: 147 GFSQESQKVWRVKKSTRKS 165
G+ + S+ R ++S +S
Sbjct: 114 GYGRRSRSPRRRRRSRSRS 132
>dbj|BAC87434.1| unnamed protein product [Homo sapiens]
Length = 135
Score = 47.8 bits (112), Expect = 5e-04
Identities = 33/121 (27%), Positives = 57/121 (46%), Gaps = 14/121 (11%)
Query: 22 VAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDG 81
+A + +LFV GL DT + ++F ++G + V V K + R FGFV F++ D
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 82 IAAMRSLHG-TRLNSFFLSI---------NPARFVDRKYKWNPPAKQHEELPGRKKIRQE 131
AM +++G R+ S+ NP+R + +W + PGR++ +
Sbjct: 61 KDAMMAMNGKVRIRVLSRSLVSRMGHPPANPSRPLSPVCRWTADPSR----PGRRRGPRL 116
Query: 132 W 132
W
Sbjct: 117 W 117
>gb|EAK90144.1| RRM domain containing protein; T22E16.120 Sc35-like splicing factor
[Cryptosporidium parvum] gi|66475620|ref|XP_627626.1|
hypothetical protein cgd6_2740 [Cryptosporidium parvum]
Length = 344
Score = 47.8 bits (112), Expect = 5e-04
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L + L DT S VR+ FERFG + V++P + R FGFV + + D AA+ +
Sbjct: 29 LLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDARAALEKM 88
Query: 89 HGTRLNSFFLSINPARFVDRKYKWNPPAKQHEE 121
G L+ +++ A ++ + +P + +H E
Sbjct: 89 DGATLDGVTINVTFA----QEGRKSPESMRHRE 117
>dbj|BAD74033.1| arginine/serine-rich 2 splicing factor [Pan troglodytes]
gi|60414777|sp|Q5R1W5|SFRS2_PANTR Splicing factor,
arginine/serine-rich 2 (Splicing factor SC35) (SC-35)
(Splicing component, 35 kDa)
Length = 221
Score = 47.8 bits (112), Expect = 5e-04
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L VD L T +R++FE++G V V++P+ F FV F KRD AM ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 89 HGTRLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRVGAP--FSGTG 146
G L+ L + AR+ PP H R G P G G
Sbjct: 76 DGAVLDGRELRVQMARY------GRPPDSHHS----------------RRGPPPRRYGGG 113
Query: 147 GFSQESQKVWRVKKSTRKS 165
G+ + S+ R ++S +S
Sbjct: 114 GYGRRSRSPRRRRRSRSRS 132
>gb|AAF53192.1| CG5442-PB, isoform B [Drosophila melanogaster]
gi|21358099|ref|NP_652612.1| CG5442-PB, isoform B
[Drosophila melanogaster] gi|17862504|gb|AAL39729.1|
LD32469p [Drosophila melanogaster]
gi|7243688|gb|AAF43415.1| SR family splicing factor SC35
[Drosophila melanogaster]
Length = 195
Score = 47.8 bits (112), Expect = 5e-04
Identities = 32/101 (31%), Positives = 48/101 (46%), Gaps = 10/101 (9%)
Query: 5 GSARAPPPRWSCHERSEVAEENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKR 64
G+AR PPPR + + L VD L T +R++FER G V +++P+
Sbjct: 11 GAAR-PPPR---------IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 60
Query: 65 VRREKFGFVLFQSKRDGIAAMRSLHGTRLNSFFLSINPARF 105
F FV F KRD A+ ++ G L+ L + AR+
Sbjct: 61 RESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARY 101
>ref|XP_667894.1| splicing factor [Cryptosporidium hominis]
gi|54659062|gb|EAL37659.1| splicing factor
[Cryptosporidium hominis]
Length = 330
Score = 47.8 bits (112), Expect = 5e-04
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 29 LFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSL 88
L + L DT S VR+ FERFG + V++P + R FGFV + + D AA+ +
Sbjct: 15 LLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDARAALEKM 74
Query: 89 HGTRLNSFFLSINPARFVDRKYKWNPPAKQHEE 121
G L+ +++ A ++ + +P + +H E
Sbjct: 75 DGATLDGVTINVTFA----QEGRKSPESMRHRE 103
>gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|45544646|ref|NP_956311.1| cold inducible RNA binding
protein [Danio rerio]
Length = 184
Score = 47.8 bits (112), Expect = 5e-04
Identities = 22/76 (28%), Positives = 42/76 (54%)
Query: 28 RLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRS 87
+LF+ GL DT + + F ++GT+ V V + + R FGFV F++ D AM +
Sbjct: 6 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 65
Query: 88 LHGTRLNSFFLSINPA 103
++G +++ + ++ A
Sbjct: 66 MNGKQVDGRMIRVDEA 81
>gb|EAL33619.1| GA18884-PA [Drosophila pseudoobscura]
Length = 188
Score = 47.8 bits (112), Expect = 5e-04
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 32 DGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRREKFGFVLFQSKRDGIAAMRSLHGT 91
D L T +R++FER G V +++P+ F FV F KRD A+ ++ G
Sbjct: 29 DNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGR 88
Query: 92 RLNSFFLSINPARFVDRKYKWNPPAKQHEELPGRKKIRQEWRIKHRVGAPFSGTGGFSQE 151
L+ L + AR+ + + P + + G ++ R ++ R +P +S
Sbjct: 89 MLDGRELRVQMARY----GRPSSPTRSNGRRGGGRRSRSRSPMRRRSRSP--RRRSYSPR 142
Query: 152 SQKVWRVKKSTRKSPEKK-------VEEQERSGMTMNQVRVGLNMDLSR 193
S R + + SPE++ V + R+G+ + + VG + SR
Sbjct: 143 S----RSQSAASHSPERRTKFSRSPVRGESRNGIGASALAVGASRSRSR 187
>gb|AAG02568.1| single-stranded TG1-3 binding protein [Schizosaccharomyces pombe]
Length = 349
Score = 47.8 bits (112), Expect = 5e-04
Identities = 36/108 (33%), Positives = 53/108 (48%), Gaps = 14/108 (12%)
Query: 25 ENIRLFVDGLDRDTKHSQVRKLFERFGTVVSVFVPKTIKRVRR------EKFGFVLFQSK 78
++ R+FV L TK S++R LFE GTV V +P +RVRR FV F ++
Sbjct: 43 DDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIP--FRRVRRGTRLVPSGIAFVTFNNQ 100
Query: 79 RDGIAAMRSLHGTRLNSFFLSINPARFV------DRKYKWNPPAKQHE 120
D A+ +L+G L+ + + AR V DRK N ++ E
Sbjct: 101 EDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPE 148
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,937,328
Number of Sequences: 2540612
Number of extensions: 23975379
Number of successful extensions: 60821
Number of sequences better than 10.0: 2008
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 791
Number of HSP's that attempted gapping in prelim test: 58294
Number of HSP's gapped (non-prelim): 3170
length of query: 351
length of database: 863,360,394
effective HSP length: 129
effective length of query: 222
effective length of database: 535,621,446
effective search space: 118907961012
effective search space used: 118907961012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0074.9