BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067b.6
(404 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 243 8e-63
emb|CAC44106.1| gag polyprotein [Cicer arietinum] 180 8e-44
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 129 1e-28
emb|CAC44140.1| putative polyprotein [Cicer arietinum] 124 7e-27
emb|CAC51363.1| putative polyprotein [Cicer arietinum] 124 7e-27
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 122 3e-26
ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultiv... 119 1e-25
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 117 8e-25
gb|AAM00970.1| Putative retroelement [Oryza sativa] 117 8e-25
emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar... 116 1e-24
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 115 2e-24
prf||1510387A retrotransposon del1-46 115 2e-24
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 115 3e-24
gb|AAP52162.1| putative retroelement [Oryza sativa (japonica cul... 114 4e-24
gb|AAP50978.1| putative polyprotein [Oryza sativa (japonica cult... 114 4e-24
gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-... 114 4e-24
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 114 4e-24
gb|AAM14672.1| Putative polyprotein [Oryza sativa (japonica cult... 114 4e-24
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 114 5e-24
emb|CAE02906.1| OSJNBb0045P24.14 [Oryza sativa (japonica cultiva... 114 5e-24
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 243 bits (620), Expect = 8e-63
Identities = 132/276 (47%), Positives = 173/276 (61%), Gaps = 23/276 (8%)
Query: 5 NQLAEMMATMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRR 64
+Q+AE M MA +V AQ A T R+ +R REI +++GL DFRR
Sbjct: 16 DQMAEAMNNMAASVAAQTAAKTQ--------------RDLEKRGREIRAAESRGLVDFRR 61
Query: 65 QNPPKFSGGTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIME 124
NPPKF G +KAD WIQEVEKIF ++ G KV ATY+LLGDAEYWW+ R +M
Sbjct: 62 YNPPKFKGDEGSEKADQWIQEVEKIFDMINCQAGVKVSYATYMLLGDAEYWWRSARLLMG 121
Query: 125 DNHEEISWNSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFH 184
HEE++W SF+ FL+KYFP S R + FL L QG ++V E+A+K ESL++HF+FF
Sbjct: 122 AAHEEVNWESFKRKFLDKYFPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESLSRHFRFFR 181
Query: 185 DHVNERYMCKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAG---TGG 241
+ ++E +MC RF +GL+ +I+DSV PL I RFQ+LVEK EVE MKN+R +R G +GG
Sbjct: 182 EEIDEPFMCHRFQDGLKYEIQDSVLPLGIQRFQALVEKCREVEDMKNKRASRVGNFNSGG 241
Query: 242 PMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRP 277
P R+ +Q+R K Q PY RP G RP
Sbjct: 242 PSRA---TYQNRGK-QVAKPYNRPQNN--NGGPSRP 271
>emb|CAC44106.1| gag polyprotein [Cicer arietinum]
Length = 209
Score = 180 bits (456), Expect = 8e-44
Identities = 94/207 (45%), Positives = 127/207 (60%), Gaps = 14/207 (6%)
Query: 5 NQLAEMMATMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRR 64
+Q+AE M MA +V AQ A T R+ +R REI +++GL DFRR
Sbjct: 17 DQMAEAMNNMAASVAAQTAAKTQ--------------RDLEKRGREIRAAESRGLEDFRR 62
Query: 65 QNPPKFSGGTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIME 124
NPPKF G +KAD WIQEVEKI +++ G V ATY+LLGDAEYW + R +M
Sbjct: 63 YNPPKFKGDESSEKADQWIQEVEKIIDMIKCQAGVTVSYATYMLLGDAEYWRRSGRLLMG 122
Query: 125 DNHEEISWNSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFH 184
HEE++W SF+ FL+KYFP S R + FL L QG M+V E+A+K SL++HF+F
Sbjct: 123 AAHEEVNWESFKRKFLDKYFPMSTRTKLGDDFLKLHQGSMTVGEYAAKFGSLSRHFRFVR 182
Query: 185 DHVNERYMCKRFVNGLRPDIEDSVRPL 211
+ +E +M F +GL+ +I+DSV PL
Sbjct: 183 EETDEPFMIHCFQDGLKYEIQDSVLPL 209
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 129 bits (325), Expect = 1e-28
Identities = 94/329 (28%), Positives = 146/329 (43%), Gaps = 24/329 (7%)
Query: 57 KGLNDFRRQNPPKFSGGT-DPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYW 115
K L DFR+ NP F G DP +A +W+ +E IF ++ E KV+ A ++L W
Sbjct: 58 KHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAW 117
Query: 116 WKGTRGIMEDNHEEISWNSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLES 175
W+ T ++ + +I+W F+ +F K+F S RD + +FL L QG M+V ++ ++ +
Sbjct: 118 WETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDM 177
Query: 176 LAKHFQFFHDHV-NERYMCKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRL 234
L++ F + + E +FV GLR DI+ VR R + A ++ L + R
Sbjct: 178 LSR---FAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQE--RA 232
Query: 235 NRAGTGGPMRSGSQNFQSREKFQSRGPYQ----RPAGTGFTSGSYRPMTGAAGGSGDQTL 290
N + T G GS + Q R+ Q P RP G F S +P G
Sbjct: 233 NSSKTAG---RGSTSGQKRKAEQQPVPVPQRNFRPGGE-FRSFQQKPFEAGEAARG---- 284
Query: 291 KKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPKTEPTVNTARGKRPAAKA 350
+ C CG+ H+ C CF C + GHTA +C T N G +A
Sbjct: 285 --KPLCTTCGK--HHLGRCLFGTRTCFKCRQEGHTADRCPLRVTGIAQNQGAGAPHQGRA 340
Query: 351 -RVYTMDGERAEEFARGERKNDGNFLTIL 378
+ E+A G G++ +L
Sbjct: 341 FATNRTEAEKAGTVVTGTLPVLGHYALVL 369
>emb|CAC44140.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 124 bits (310), Expect = 7e-27
Identities = 77/192 (40%), Positives = 98/192 (50%), Gaps = 16/192 (8%)
Query: 215 RFQSLVEKATEVELMKNRRLNRAG---TGGPMRSGSQNFQSREKFQSRGPYQRPAGTGFT 271
RFQ+LVEK EVE MKN+R +R G +GGP R+ N+Q++ K Q PY RP
Sbjct: 1 RFQALVEKCREVEDMKNKRASRVGNFNSGGPSRA---NYQNKGK-QVAKPYNRPQNNN-- 54
Query: 272 SGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRA 331
G RP G Q L+ CFRCG GHYA+AC P C NC ++GH C A
Sbjct: 55 GGQSRPGNQNFGRQMGQVLR----CFRCGGEGHYASACTTNIPICHNCRKLGHMTRDCTA 110
Query: 332 PKTEPTVNTARGKRPAAKARVYTMDGERAE---EFARGERKNDGNFLTILSYSSITCSIT 388
PK E VN AR RP A+ R+Y ++ E + + + GN LT L S T S
Sbjct: 111 PKVELVVNVARATRPTARGRIYCVNAEEGNPSGNLIQRDCEIAGNTLTALFDSGATHSFI 170
Query: 389 LVACANTSNLLI 400
+ C N L +
Sbjct: 171 AMGCVNRLKLSV 182
>emb|CAC51363.1| putative polyprotein [Cicer arietinum]
Length = 318
Score = 124 bits (310), Expect = 7e-27
Identities = 78/192 (40%), Positives = 97/192 (49%), Gaps = 16/192 (8%)
Query: 215 RFQSLVEKATEVELMKNRRLNRAG---TGGPMRSGSQNFQSREKFQSRGPYQRPAGTGFT 271
RFQ+LVEK EVE MKN+R +R G +GGP R+ N+Q++ K Q PY RP
Sbjct: 1 RFQALVEKCREVEDMKNKRASRVGNFNSGGPSRA---NYQNKGK-QVAKPYNRPQNNN-- 54
Query: 272 SGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRA 331
G RP G Q L+ CFRCG GHYA+AC P C NC + H C A
Sbjct: 55 GGQSRPGNQNFGRQLGQVLR----CFRCGGEGHYASACTANVPTCHNCRKSEHMERDCTA 110
Query: 332 PKTEPTVNTARGKRPAAKARVYTMDGERAE---EFARGERKNDGNFLTILSYSSITCSIT 388
PK EP VN AR RP A+ R+Y M+ E + + + GN LT L S T S
Sbjct: 111 PKVEPVVNVARATRPTARGRIYCMNAEEGNPSGNLIQRDCEIAGNTLTALFDSGATHSFI 170
Query: 389 LVACANTSNLLI 400
+ C N L +
Sbjct: 171 AMDCVNRLKLSV 182
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 122 bits (305), Expect = 3e-26
Identities = 89/304 (29%), Positives = 137/304 (44%), Gaps = 31/304 (10%)
Query: 32 NAMRRATEEAREQHQRQREIT-----LDQNK-GLNDFRRQNPPKFSGGTDPDKADLWIQE 85
N + + +E QRQ EI D N+ GL +F++ PP FSG +P +A+ WI
Sbjct: 38 NLLANILGKQQETQQRQMEILERITKSDANRNGLGEFQKLKPPTFSGTANPLEAEEWIVA 97
Query: 86 VEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISWNSFRTAFLEKYFP 145
+EK F + + K+ ATY+L A WW + + I+W F+ AF +KYFP
Sbjct: 98 MEKSFEAMGCTDKEKIIYATYMLQSSAFEWWDAHKKSYSE-RIFITWELFKEAFYKKYFP 156
Query: 146 TSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNGLRPDIE 205
S + +E +FL L+QG SV E+ + LA+ F + +RF +GLR ++
Sbjct: 157 ESVKRMKEKEFLELKQGNKSVAEYEIEFSRLARFAPEFVQ--TDGSKARRFESGLRQPLK 214
Query: 206 DSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQSREKFQSRGPYQRP 265
V + F+ +V KA +E K R G P ++KF++ P +
Sbjct: 215 RRVEAFELTIFREVVSKAQLLE--KGYHEQRIEHGQP----------QKKFKTNNPQNQG 262
Query: 266 AGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDTRPKCFNCNRMGHT 325
G SG + + G +K C + H + CP+ +CF C GHT
Sbjct: 263 RFRGNYSGQMQRKSSENQG------RKCPIC----QGSHVPSICPNCWGRCFECGEAGHT 312
Query: 326 AGQC 329
QC
Sbjct: 313 RYQC 316
>ref|XP_471257.1| OSJNBa0056L23.17 [Oryza sativa (japonica cultivar-group)]
gi|38347272|emb|CAE05319.2| OSJNBa0056L23.17 [Oryza
sativa (japonica cultivar-group)]
Length = 963
Score = 119 bits (299), Expect = 1e-25
Identities = 110/416 (26%), Positives = 167/416 (39%), Gaps = 55/416 (13%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q + N + + + + +Q Q QNK L DF R +PP FS
Sbjct: 188 TLAQILAQQTQLI------NLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVSPPTFSS 240
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ VEK ++Q E KV A++ L G A WW R E I+W
Sbjct: 241 TTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ-GRAGGEPITW 299
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F TAF + + PT ++ +F L QG SV E+ LA++ D +
Sbjct: 300 QEFTTAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEER 357
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
++F+ GL ++ ++ FQ LV+KA E NR + +S Q
Sbjct: 358 QEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKS-QQGSNQ 416
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPM-------TGAAGGSG-------------DQTLKK 292
R + + GP G +S RP TG G +Q ++K
Sbjct: 417 RPRLVT-GPQVPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRSVVARPAATPVQNQPVRK 475
Query: 293 E-----TTCFRCGEPGHYANACPDTRPKCFNCNRMGHTAGQCRAPKTEPTVNTARGKRPA 347
E CF CG+PGHYA+ CP + R K P N + P
Sbjct: 476 EQGSKPVICFNCGDPGHYADKCP-----------------KPRRVKNAPAPNNSSAPAPK 518
Query: 348 AKA-RVYTMDGERAEEFARGERKNDGNFLTILSYSSITCSITLVACANTSNLLILS 402
A+ V + + A + G + T+L S T S + A+ + ++S
Sbjct: 519 ARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGIEVIS 574
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 117 bits (292), Expect = 8e-25
Identities = 93/324 (28%), Positives = 136/324 (41%), Gaps = 33/324 (10%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q + N + + + + +Q Q QNK L DF R PP FS
Sbjct: 20 TLAQILAQQTQLI------NLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVRPPTFSS 72
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ VEK ++Q E KV A++ L G A WW R + E I+W
Sbjct: 73 TTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITW 131
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P ++ +F L QG SV E+ LA++ D +
Sbjct: 132 QEFTAAFKKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEER 189
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNR---RLNRAG----------- 238
++F+ GL ++ ++ FQ LV+KA E NR ++ RA
Sbjct: 190 QEKFLEGLNDELSYALMSTDFWDFQQLVDKAIRQEDKYNRMEQKMRRAAQFKAQQGSNQR 249
Query: 239 ----TGGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKE- 293
TG S SQ S R Y G AA + +Q +++E
Sbjct: 250 PRLVTGPQAPSYSQGGSSSVIRPQRQFYNNNTGNRGNDNRNMVARPAATSAQNQPVRREQ 309
Query: 294 ----TTCFRCGEPGHYANACPDTR 313
CF CG+PGHYA+ CP R
Sbjct: 310 GSKPVVCFNCGDPGHYADKCPKPR 333
>gb|AAM00970.1| Putative retroelement [Oryza sativa]
Length = 1425
Score = 117 bits (292), Expect = 8e-25
Identities = 96/319 (30%), Positives = 146/319 (45%), Gaps = 40/319 (12%)
Query: 7 LAEMMATMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQN 66
LA++MA Q + A Q + Q + +R + A +QHQ Q Q+K L +F
Sbjct: 43 LAQVMAHQTQMMAAMMQQMQQQ-HQQMHQRMLQHAEQQHQ-QFGPPPPQSK-LPEFLLVR 99
Query: 67 PPKFSGGTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDN 126
PP FS T+P +A+ W+ +EK +LQ + KV AT+ L G A WW DN
Sbjct: 100 PPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWW--------DN 151
Query: 127 H-------EEISWNSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKH 179
H E++W F +F + P +++ +F L QG +V E+ + LA++
Sbjct: 152 HMATRPPGTEVTWAEFCRSFKKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARY 211
Query: 180 FQFFHDHVNERYMCKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGT 239
D + ++F+ GL ++ + + F+ LV+KA E +N +++R
Sbjct: 212 AP--EDVRTDAEKQEKFLAGLDDELTNQLISGDYADFERLVDKAIRQEDQRN-KMDRKSN 268
Query: 240 GGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKET----- 294
SGSQN + +RG RP PM A G Q KKET
Sbjct: 269 FPQGASGSQNHHGGQ--PNRGAAPRP-----------PMAPAQSGPSAQA-KKETGAKPG 314
Query: 295 TCFRCGEPGHYANACPDTR 313
+CF CGE GH+A+ CP R
Sbjct: 315 SCFNCGELGHFADKCPKPR 333
>emb|CAE04932.2| OSJNBa0017P10.9 [Oryza sativa (japonica cultivar-group)]
gi|50921971|ref|XP_471346.1| OSJNBa0017P10.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1752
Score = 116 bits (290), Expect = 1e-24
Identities = 94/332 (28%), Positives = 143/332 (42%), Gaps = 37/332 (11%)
Query: 3 NTNQLAEMMATMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDF 62
N N +E T+AQ + QAQ M ++ + Q + QNK L +F
Sbjct: 294 NNNNNSEGNPTLAQVLAQQAQL---------MNMMMQQLQNQQNQGNNHAPPQNK-LAEF 343
Query: 63 RRQNPPKFSGGTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGI 122
R PP FS T+P +A W+ +EK +LQ + KV A++ L G A WW R +
Sbjct: 344 LRVRPPIFSSTTNPVEAGDWLHTIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-L 402
Query: 123 MEDNHEEISWNSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQF 182
E I+W F AF + + P+ ++ +F +L QG SV E+ + LA++
Sbjct: 403 NRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP- 461
Query: 183 FHDHVNERYMCKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNR--RLNRAGTG 240
D N+ ++F+ GL ++ + FQ LV+KA E NR + R
Sbjct: 462 -EDVRNDEERQEKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAQ 520
Query: 241 GPMRSGS--------------QNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSG 286
+R G+ Q S R + AG + + RP+ A +
Sbjct: 521 FKVRQGNNQRPRLTLGPQPMPQGGSSSVVHPQRQFFNNNAGNNIRNQAPRPV---AAPTQ 577
Query: 287 DQTLKKE-----TTCFRCGEPGHYANACPDTR 313
Q +K+E CF CG+PGHYA+ CP R
Sbjct: 578 QQPVKREQGSKPVVCFNCGDPGHYADKCPKPR 609
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 115 bits (288), Expect = 2e-24
Identities = 94/326 (28%), Positives = 139/326 (41%), Gaps = 37/326 (11%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q + N + + + + +Q Q QNK L DF R PP FS
Sbjct: 24 TLAQILAQQTQLI------NLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLRVRPPTFSS 76
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ VEK ++Q E KV A++ L G A WW R + E I+W
Sbjct: 77 TTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITW 135
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + PT ++ +F L QG SV E+ LA + D +
Sbjct: 136 QEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLAHYAP--EDVRTDEER 193
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
++F+ GL ++ ++ FQ LV+KA E NR + ++ Q
Sbjct: 194 QEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKA-QQGSNQ 252
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPM-------TG-------------AAGGSGDQTLKK 292
R + + GP G +S RP TG AA + +Q ++K
Sbjct: 253 RPRLIT-GPQDPSYPQGGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPAATPAQNQPVRK 311
Query: 293 ET-----TCFRCGEPGHYANACPDTR 313
E CF CG+PGHYA+ CP R
Sbjct: 312 EQGSKPGVCFNCGDPGHYADKCPKPR 337
Score = 33.9 bits (76), Expect = 9.2
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 285 SGDQTLKKETTCFRCGEPGHYANA----------------CPDTRPKCFNCNRMGHTAGQ 328
S D+ + C RCGE GH A++ CP +R CF C H
Sbjct: 2173 SDDEDEMERKACSRCGEIGHVASSCATICVHCEEDHPPDRCPTSRITCFFCEGTDHVPKD 2232
Query: 329 CR 330
C+
Sbjct: 2233 CQ 2234
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 115 bits (288), Expect = 2e-24
Identities = 80/277 (28%), Positives = 125/277 (44%), Gaps = 42/277 (15%)
Query: 37 ATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSGGTDPDKADLWIQEVEKIFGVLQTA 96
A EQ RQ E + + + +F+ NPP F G DP +A WI+ V KI L
Sbjct: 38 AISHQAEQSARQGE---SRPRLIKEFKGLNPPIFKGDPDPLEAHRWIRHVTKILDTLGVT 94
Query: 97 EGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISWNSFRTAFLEKYFPTSARDERESQF 156
+ KV +A++ L G+AE+WW ED+ +I W+ F F EK+FP + RD+ E +F
Sbjct: 95 DEQKVILASFQLQGEAEFWWDAKVRSREDDTTQIKWDEFVEVFTEKFFPDTVRDDLE-RF 153
Query: 157 LTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNGLRPDIEDSVRPLRIMRF 216
+TL QG ++V ++ +K E L+++ + D +N R + KRF GL+ I + I +
Sbjct: 154 MTLVQGSLTVAQYEAKFEELSRYAPYQVD-INIRKV-KRFEQGLKLSITKQLSSHLIKDY 211
Query: 217 QSLVEKATEVE--------LMKNRRLNRAGTGGPMRSGSQNFQSREKFQSRGPYQRPAGT 268
+ ++ +A VE +M R G P + QS +K Q P
Sbjct: 212 REVITRALSVEKREQREAQIMAKRSKKNRGHNHPYTRKEPHRQSNDKSQCPNP------- 264
Query: 269 GFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHY 305
L C+ G+PGH+
Sbjct: 265 ---------------------LSPGKVCYSYGQPGHF 280
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 115 bits (287), Expect = 3e-24
Identities = 102/345 (29%), Positives = 154/345 (44%), Gaps = 53/345 (15%)
Query: 7 LAEMMATMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQN 66
LA++MA Q + A Q + Q + +R + A +QHQ Q Q+K L +F R
Sbjct: 349 LAQVMAHQTQMMAAMMQQMQQQ-HQQMHQRMMQHAEQQHQ-QFGPPPPQSK-LPEFLRVR 405
Query: 67 PPKFSGGTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDN 126
PP FS T+P +A+ W+ +EK +LQ + KV AT+ L G A WW DN
Sbjct: 406 PPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWW--------DN 457
Query: 127 H-------EEISWNSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKH 179
H E++W F +F + P +++ +F L QG M+V E+ + LA++
Sbjct: 458 HMATRPPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNMTVTEYLHEFNRLARY 517
Query: 180 FQFFHDHVNERYMCKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGT 239
D + ++F+ GL ++ + + F+ LV+KA E +N +++R
Sbjct: 518 AP--EDVRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRN-KMDRKRK 574
Query: 240 GGPMRSGSQNFQSREKF---QSRGP------YQRPAGTG----FTSGSY----------- 275
RS +Q Q R +F Q GP RP + TSGS
Sbjct: 575 AAQFRS-NQGSQHRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGA 633
Query: 276 --RPMTGAAGGSGDQTLKKET-----TCFRCGEPGHYANACPDTR 313
RP A + KKET +CF CGE GH+A+ CP R
Sbjct: 634 APRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPKPR 678
>gb|AAP52162.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531146|ref|NP_919875.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22725913|gb|AAN04923.1| Putative retroelement [Oryza
sativa]
Length = 1729
Score = 114 bits (286), Expect = 4e-24
Identities = 86/301 (28%), Positives = 131/301 (42%), Gaps = 25/301 (8%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q M ++ + Q + QNK L +F R PP FS
Sbjct: 413 TLAQVLAQQTQL---------MNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSS 462
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ +EK +LQ + KV A++ L G A WW R + E I+W
Sbjct: 463 TTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITW 521
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P+ ++ +F +L QG SV E+ + LA++ D N+
Sbjct: 522 LEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRNDEER 579
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
++F+ GL ++ + FQ LV+KA E NR + + +Q S
Sbjct: 580 QEKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFK--AQQGSS 637
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDT 312
++ + GP P G S +P G K CF CG+PGHYA+ CP
Sbjct: 638 QKPRLTLGPQSMPQG---ASTQQQPAKREQG-------SKPMVCFNCGDPGHYADKCPKP 687
Query: 313 R 313
R
Sbjct: 688 R 688
>gb|AAP50978.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50917395|ref|XP_469094.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1564
Score = 114 bits (286), Expect = 4e-24
Identities = 85/306 (27%), Positives = 133/306 (42%), Gaps = 26/306 (8%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + QAQ M ++ + Q + QNK L +F R PP FS
Sbjct: 187 TLAQVLAQQAQL---------MNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPTFSS 236
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T P + W+ +EK +LQ + KV A++ L G A WW R + E I+W
Sbjct: 237 TTSPVEPGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTVEPITW 295
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P+ ++ +F +L QG SV E+ + LA++ D ++
Sbjct: 296 LEFTAAFRKMHIPSGVLSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRTDKQR 353
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
+RF+ GL ++ + FQ LV+KA E + L P S +
Sbjct: 354 QERFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDNQRPHLTLGPQSLPQGGSSSVVRP 413
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKET-----TCFRCGEPGHYAN 307
+ +F + AG + + RP+ A + Q K+E CF CG+PGHY++
Sbjct: 414 QRQF-----FNNNAGNNIRNQAPRPV---AAPTQQQPAKREQGSKPGVCFNCGDPGHYSD 465
Query: 308 ACPDTR 313
CP R
Sbjct: 466 KCPKPR 471
>gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1640
Score = 114 bits (286), Expect = 4e-24
Identities = 94/335 (28%), Positives = 140/335 (41%), Gaps = 50/335 (14%)
Query: 43 EQHQRQREITLDQNKGLNDFRRQNPPKFSGGTDPDKADLWIQEVEKIFGVLQTAEGAKVR 102
+Q ++ QNK L DF R P FS T+P +A +W+ VEK ++Q E KV
Sbjct: 361 QQGNNHNQLPPPQNK-LADFLRVRPATFSSTTNPVEAGIWLHAVEKKLDLIQCTEQEKVS 419
Query: 103 MATYLLLGDAEYWWKGTRGIMEDNHEEISWNSFRTAFLEKYFPTSARDERESQFLTLRQG 162
A++ L G A WW R + + I+W F AF + + P ++ +F L QG
Sbjct: 420 FASHQLHGPAAEWWDHFRQNRAEG-DPITWQEFTAAFKKTHIPLGVVALKKREFRALNQG 478
Query: 163 GMSVPEFASKLESLAKHFQFFHDHVNERYMCKRFVNGLRPDIEDSVRPLRIMRFQSLVEK 222
SV E+ LA++ D + + ++F+ GL ++ ++ FQ LV+K
Sbjct: 479 SHSVTEYLHDFNHLARYAP--EDVLTDEERQEKFLEGLNDELSYALMSTDYQDFQQLVDK 536
Query: 223 ATEVELMKNRRLNRAGTGGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPM---- 278
A E NR + + +Q S+ + GP P G S RP
Sbjct: 537 AIRQEDKYNRMEQKKRRAAQFK--AQQGSSQRPRIALGPQAAPYPQGGFSSVTRPQRQFY 594
Query: 279 ---TG-------------AAGGSGDQTLKKET-----TCFRCGEPGHYANACPDTRPKCF 317
TG A + +Q ++KE CF CG+PGHYA+ CP +P+C
Sbjct: 595 NNNTGNRSNDNRNVVARPVAAPTQNQPIRKEQGSKLGVCFNCGDPGHYADKCP--KPRCV 652
Query: 318 NCNRMGHTAGQCRAPKTEPTVNTARGKRPAAKARV 352
K P N + PA KARV
Sbjct: 653 ---------------KNAPVQNNSNA--PAPKARV 670
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 114 bits (286), Expect = 4e-24
Identities = 91/326 (27%), Positives = 138/326 (41%), Gaps = 37/326 (11%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q + N + + + + +Q Q QNK L DF R PP FS
Sbjct: 284 TLAQILAQQTQLI------NLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVRPPTFSS 336
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ VEK ++Q E KV A++ L G A WW R + E I+W
Sbjct: 337 TTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITW 395
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P+ ++ +F L QG SV E+ LA++ D +
Sbjct: 396 QEFTAAFRKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRTDEER 453
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
++F+ GL ++ ++ FQ LV+KA E NR + ++ Q
Sbjct: 454 QEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKA-QQGSNQ 512
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPM--------------------TGAAGGSGDQTLKK 292
R + + GP G +S RP AA + +Q ++K
Sbjct: 513 RPRLVT-GPQVPSYPQGGSSSVVRPQRQFYNNNTSNRGNDNRNVVARPAATSAQNQPVRK 571
Query: 293 E-----TTCFRCGEPGHYANACPDTR 313
E CF CG+PGHYA+ CP R
Sbjct: 572 EQGSKPVICFNCGDPGHYADKCPKPR 597
>gb|AAM14672.1| Putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1342
Score = 114 bits (286), Expect = 4e-24
Identities = 86/301 (28%), Positives = 131/301 (42%), Gaps = 25/301 (8%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q M ++ + Q + QNK L +F R PP FS
Sbjct: 26 TLAQVLAQQTQL---------MNMMMQQLQNQQNQGNNHAPPQNK-LAEFLRVRPPVFSS 75
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ +EK +LQ + KV A++ L G A WW R + E I+W
Sbjct: 76 TTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFR-LNRTTAEPITW 134
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P+ ++ +F +L QG SV E+ + LA++ D N+
Sbjct: 135 LEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAP--EDVRNDEER 192
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
++F+ GL ++ + FQ LV+KA E NR + + +Q S
Sbjct: 193 QEKFLEGLNDELSYPLMTGDYHDFQKLVDKAIRQEDKYNRMEQKKRRIAHFK--AQQGSS 250
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKETTCFRCGEPGHYANACPDT 312
++ + GP P G S +P G K CF CG+PGHYA+ CP
Sbjct: 251 QKPRLTLGPQSMPQG---ASTQQQPAKREQG-------SKPMVCFNCGDPGHYADKCPKP 300
Query: 313 R 313
R
Sbjct: 301 R 301
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1461
Score = 114 bits (285), Expect = 5e-24
Identities = 89/306 (29%), Positives = 131/306 (42%), Gaps = 17/306 (5%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q + N + + + + +Q Q QNK L DF R PP FS
Sbjct: 24 TLAQILAQQTQLI------NLLVQQAQNQQGNNQNQNPPPPPQNK-LADFLRVRPPTFSS 76
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ VEK ++Q E KV A++ L G A WW R E I+W
Sbjct: 77 TTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQ-GRAGGEPITW 135
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P+ ++ +F L QG SV ++ LA + D +
Sbjct: 136 QEFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTKYLHDFNRLACYAP--EDVCTDEER 193
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNRRLNRAGTGGPMRSGSQNFQS 252
++F+ GL ++ ++ FQ LV+KA E N + R TG + S Q S
Sbjct: 194 QEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQE--DNNQRPRLVTGPQVPSYPQGGSS 251
Query: 253 REKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKE-----TTCFRCGEPGHYAN 307
R Y G AA +Q +++E CF CG+PGHYA+
Sbjct: 252 SVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQPVRREQGSKPVICFNCGDPGHYAD 311
Query: 308 ACPDTR 313
CP R
Sbjct: 312 KCPKPR 317
>emb|CAE02906.1| OSJNBb0045P24.14 [Oryza sativa (japonica cultivar-group)]
gi|50930825|ref|XP_474940.1| OSJNBb0045P24.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1195
Score = 114 bits (285), Expect = 5e-24
Identities = 92/324 (28%), Positives = 134/324 (40%), Gaps = 33/324 (10%)
Query: 13 TMAQAVTAQAQAVTAQANDNAMRRATEEAREQHQRQREITLDQNKGLNDFRRQNPPKFSG 72
T+AQ + Q Q + N + + + + +Q Q QNK L DF R PP FS
Sbjct: 26 TLAQILAQQTQLI------NLLVQQAQNQQANNQNQNPPPPPQNK-LADFLRVRPPTFSS 78
Query: 73 GTDPDKADLWIQEVEKIFGVLQTAEGAKVRMATYLLLGDAEYWWKGTRGIMEDNHEEISW 132
T+P +A W+ VEK ++Q E KV A++ L G A WW R + E I+W
Sbjct: 79 TTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAEG-EPITW 137
Query: 133 NSFRTAFLEKYFPTSARDERESQFLTLRQGGMSVPEFASKLESLAKHFQFFHDHVNERYM 192
F AF + + P ++ +F L QG SV E+ LA++ D ++
Sbjct: 138 QEFTAAFKKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAP--EDVRSDEER 195
Query: 193 CKRFVNGLRPDIEDSVRPLRIMRFQSLVEKATEVELMKNR------------------RL 234
++F+ GL ++ ++ FQ LV+KA E NR +
Sbjct: 196 QEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQR 255
Query: 235 NRAGTGGPMRSGSQNFQSREKFQSRGPYQRPAGTGFTSGSYRPMTGAAGGSGDQTLKKET 294
R TG S Q S R Y G + AA +Q ++KE
Sbjct: 256 PRLVTGPQAPSYPQGGSSSVVRSQRQFYNNNTGNRGNDNRNMVVRPAATPVQNQPVRKEQ 315
Query: 295 -----TCFRCGEPGHYANACPDTR 313
CF CG+PGHYA+ CP R
Sbjct: 316 GSKPGVCFNCGDPGHYADKCPKPR 339
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 687,134,934
Number of Sequences: 2540612
Number of extensions: 29945770
Number of successful extensions: 101450
Number of sequences better than 10.0: 4994
Number of HSP's better than 10.0 without gapping: 3565
Number of HSP's successfully gapped in prelim test: 1435
Number of HSP's that attempted gapping in prelim test: 86624
Number of HSP's gapped (non-prelim): 11065
length of query: 404
length of database: 863,360,394
effective HSP length: 130
effective length of query: 274
effective length of database: 533,080,834
effective search space: 146064148516
effective search space used: 146064148516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0067b.6