BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0067a.8
(611 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 137 1e-30
gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (jap... 137 1e-30
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 135 3e-30
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 134 9e-30
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 133 2e-29
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 133 2e-29
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 128 5e-28
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 127 8e-28
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 127 8e-28
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 126 2e-27
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 125 3e-27
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 125 3e-27
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 124 9e-27
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 122 3e-26
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 121 7e-26
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 119 2e-25
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 115 3e-24
ref|NP_909558.1| putative reverse transcriptase [Oryza sativa] g... 115 4e-24
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 115 5e-24
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 115 5e-24
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 137 bits (345), Expect = 1e-30
Identities = 100/398 (25%), Positives = 173/398 (43%), Gaps = 53/398 (13%)
Query: 230 KCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGGL 289
K + + V + FK+P V + ++ NF W +R+ W +W+ + KPK GGL
Sbjct: 1528 KAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGL 1587
Query: 290 GLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIE-------SPWWRDVQA 342
G +D+ FN A+L + WR + +SL +V+KAKY G +I+ SP WR ++
Sbjct: 1588 GFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEY 1647
Query: 343 ARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQKYSRIVDMG 402
G++ + G+ VGNG+S + W + W R H ++ + R+ +
Sbjct: 1648 ------GLDLLKKGIIWRVGNGNSIRIWRDSWL------PRDHSRRPITGKANCRLKWVS 1695
Query: 403 EWVGAGWRWK----FSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYT 458
+ + W + NL A + +C + ++ D W P+ G ++
Sbjct: 1696 DLITEDGSWDVPKIHQYFHNLDAEV---ILNIC------ISSRSEEDFIAWHPDKNGMFS 1746
Query: 459 VNNAYLF----------MQGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQ 508
V +AY + A + +W VP VK FAW++ N + +
Sbjct: 1747 VRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKK 1806
Query: 509 RRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFL 568
+R + QSD+ C +C E E AH + C + LW +C + S+ + F
Sbjct: 1807 KRKL--EQSDM-CQICDRENEDDAHALCRCIQASQLW-SCMHKSGSVSVDIKASVLGRFW 1862
Query: 569 HFPHHGRNATQRHGEY--AVWLALTWSVWLLRNEILFG 604
F + ++ EY A++L W W +RNE++ G
Sbjct: 1863 LF-----DCLEKIPEYEQAMFLMTLWRNWYVRNELIHG 1895
>gb|AAP54636.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536094|ref|NP_922349.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|13786450|gb|AAK39575.1| putative
reverse transcriptase [Oryza sativa]
Length = 791
Score = 137 bits (344), Expect = 1e-30
Identities = 100/398 (25%), Positives = 173/398 (43%), Gaps = 53/398 (13%)
Query: 230 KCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGGL 289
K + + V + FK+P V + ++ NF W +R+ W +W+ + KPK GGL
Sbjct: 204 KAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGL 263
Query: 290 GLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIE-------SPWWRDVQA 342
G +D+ FN A+L + WR + +SL +V+KAKY G +I+ SP WR ++
Sbjct: 264 GFRDYWLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEY 323
Query: 343 ARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQKYSRIVDMG 402
G++ + G+ VGNG+S + W + W R H ++ + R+ +
Sbjct: 324 ------GLDLLKKGIIWRVGNGNSIRIWRDPWL------PRDHSRRPITGKANCRLKWVS 371
Query: 403 EWVGAGWRWK----FSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYT 458
+ + W + NL A + +C + ++ D W P+ G ++
Sbjct: 372 DLITEDGSWDVPKIHQYFHNLDAEV---ILNIC------ISSRSEEDFIAWHPDKNGMFS 422
Query: 459 VNNAYLF----------MQGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQ 508
V +AY + A + +W VP VK FAW++ N + +
Sbjct: 423 VRSAYRLAAQLVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKK 482
Query: 509 RRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFL 568
+R + QSD+ C +C E E AH + C + LW +C + S+ + F
Sbjct: 483 KRKL--EQSDM-CQICDRENEDDAHALCRCIQASQLW-SCMHKSGSVSVDIKASVLGRFW 538
Query: 569 HFPHHGRNATQRHGEY--AVWLALTWSVWLLRNEILFG 604
F + ++ EY A++L W W +RNE++ G
Sbjct: 539 LF-----DCLEKIPEYEQAMFLMTLWRNWYVRNELIHG 571
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 135 bits (341), Expect = 3e-30
Identities = 107/415 (25%), Positives = 176/415 (41%), Gaps = 55/415 (13%)
Query: 223 GEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICK 282
G+ +L AL P V ++ F++P G+ + +M +F W +I W+ +++
Sbjct: 740 GKEILLKSIALALP-VYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTL 798
Query: 283 PKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIE-------SP 335
PK GG G KD FN A+L K WR D+ S+ Q+ K++Y + S
Sbjct: 799 PKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSY 858
Query: 336 WWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDW--SGKGKLDGRYHRLYNLSRQ 393
WR + R + G GL +++GNG+ T W++ W G + H L N+
Sbjct: 859 TWRSILYGRELLNG------GLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNI-HM 911
Query: 394 KYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNS 453
K S ++D + W NL + + +K + + + + D + W +
Sbjct: 912 KVSHLIDP---LTRNW--------NLKKLTELFHEKDVQLIMHQRPLISSEDSYCWAGTN 960
Query: 454 EGFYTVNNAY----------LFMQGD-EGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIP 502
G YTV + Y LF + D + ++W+ +K F WK + +
Sbjct: 961 NGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALA 1020
Query: 503 CRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGP 562
+L+ RG+ A C C EE+ET HL+ C +W L+ I AP+ G
Sbjct: 1021 VEDRLRSRGIRTAD---GCLFCKEEIETINHLLFQCPFARQVW-----ALSLIQAPATGF 1072
Query: 563 ISEHFLHFPHHGRNATQ----RH-GEYAVWLALTWSVWLLRNEILF-GTAVYDQE 611
+ F + H +N+ RH + W L W +W RN+ LF GT + E
Sbjct: 1073 GTSIFSNINHVIQNSQNFGIPRHMRTVSPW--LLWEIWKNRNKTLFQGTGLTSSE 1125
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 134 bits (337), Expect = 9e-30
Identities = 103/397 (25%), Positives = 166/397 (40%), Gaps = 42/397 (10%)
Query: 221 FRGEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERI 280
+ G+ +L + C L S + + + +P GV + I F W G ++R+ + WE +
Sbjct: 323 YGGKAILINSC-LSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEAL 381
Query: 281 CKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRII-------E 333
C+PK+FGGLG D N A+L K +R C +++ KY + G
Sbjct: 382 CRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEES 441
Query: 334 SPWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQ 393
S +W+ + + W + G + VGNG +T FW + W G+ L +Y +Y +
Sbjct: 442 SQFWKGLHEVK------KWMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCAD 495
Query: 394 KYSRIVDM---GEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWP 450
K + M G+W RR+L R+ + E+ L + R D W
Sbjct: 496 KEKTVSQMCLEGDWY-------IELRRSLGERDLNEWNDLHNTPREIHLKEER-DCIIWK 547
Query: 451 PNSEGFYTVNNAYLFMQGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRR 510
GFY Y + G D ++ LW + +P VK W ++ RI QL++
Sbjct: 548 LTKNGFYKAKTLYQALSFG-GVKDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQLKK- 605
Query: 511 GVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHF 570
+ +C LC + E HLM C +W PS E L
Sbjct: 606 --MKWSGSPNCKLC-GQTEDVDHLMFRCHISQFMWCCYRDAFGWDNIPS---SREDLLE- 658
Query: 571 PHHGRNATQRHGEYAVWLAL----TWSVWLLRNEILF 603
+ Q+ G+ +V LA TW++WL+RN+ +F
Sbjct: 659 ----KLNIQKDGQKSVLLACLAAGTWAIWLMRNDWVF 691
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 133 bits (334), Expect = 2e-29
Identities = 111/413 (26%), Positives = 175/413 (41%), Gaps = 54/413 (13%)
Query: 216 AKAFIFRGEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWV 275
AK G+ +L AL P V +S FK+P + ++ +M +F W ++R+I W+
Sbjct: 759 AKTLSQGGKEVLLKSIALALP-VYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWL 817
Query: 276 SWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESP 335
SW+R+ PKD GG G KD FN A+L K WR L + SL+ +V +++Y + +
Sbjct: 818 SWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSAT 877
Query: 336 -WWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDW--SGKGKLDGRYHRLYNLSR 392
R A R + G GL V+GNG T W + W G + R N+
Sbjct: 878 RGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVD- 936
Query: 393 QKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQN----RSDVWR 448
K S+++D W + R+L W E++L Q + D +
Sbjct: 937 LKVSQLID-----PTSRNWNLNMLRDLFP----WKDV------EIILKQRPLFFKEDSFC 981
Query: 449 WPPNSEGFYTVNNAYLFM---------QGDEGEP--DAALKRLWAAPVPSNVKAFAWKLM 497
W + G Y+V Y F+ Q + +P ++ ++W ++ F WK +
Sbjct: 982 WLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKAL 1041
Query: 498 LNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLW------EACNTR 551
IP +L+ RG+ +SD C +C E ET H++ C +W A +
Sbjct: 1042 HGAIPVEDRLRTRGI---RSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEF 1098
Query: 552 LNSIYAPSLGPIS-EHFLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
NS+Y I PHH R + W + W +W RN +LF
Sbjct: 1099 SNSVYTNMSRLIDLTQQNDLPHHLRFVSP-------W--ILWFLWKNRNALLF 1142
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 133 bits (334), Expect = 2e-29
Identities = 111/413 (26%), Positives = 175/413 (41%), Gaps = 54/413 (13%)
Query: 216 AKAFIFRGEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWV 275
AK G+ +L AL P V +S FK+P + ++ +M +F W ++R+I W+
Sbjct: 780 AKTLSQGGKEVLLKSIALALP-VYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWL 838
Query: 276 SWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESP 335
SW+R+ PKD GG G KD FN A+L K WR L + SL+ +V +++Y + +
Sbjct: 839 SWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSAT 898
Query: 336 -WWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDW--SGKGKLDGRYHRLYNLSR 392
R A R + G GL V+GNG T W + W G + R N+
Sbjct: 899 RGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVD- 957
Query: 393 QKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQN----RSDVWR 448
K S+++D W + R+L W E++L Q + D +
Sbjct: 958 LKVSQLID-----PTSRNWNLNMLRDLFP----WKDV------EIILKQRPLFFKEDSFC 1002
Query: 449 WPPNSEGFYTVNNAYLFM---------QGDEGEP--DAALKRLWAAPVPSNVKAFAWKLM 497
W + G Y+V Y F+ Q + +P ++ ++W ++ F WK +
Sbjct: 1003 WLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKAL 1062
Query: 498 LNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLW------EACNTR 551
IP +L+ RG+ +SD C +C E ET H++ C +W A +
Sbjct: 1063 HGAIPVEDRLRTRGI---RSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEF 1119
Query: 552 LNSIYAPSLGPIS-EHFLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
NS+Y I PHH R + W + W +W RN +LF
Sbjct: 1120 SNSVYTNMSRLIDLTQQNDLPHHLRFVSP-------W--ILWFLWKNRNALLF 1163
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 128 bits (322), Expect = 5e-28
Identities = 99/372 (26%), Positives = 164/372 (43%), Gaps = 49/372 (13%)
Query: 256 RIMWNFLWGGSPEERRIAWVSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNS 315
R++ NF WG ER++ W++WE+I PK GGLG +D FN A+L + WR L +S
Sbjct: 732 RMVRNFWWGHDNGERKVHWIAWEKILYPKSHGGLGFRDMKCFNQALLARQAWRLLTSPDS 791
Query: 316 LWCQVIKAKYDQPGRIIESPW-------WRDVQAARVDMGGINWFEAGLAKVVGNGDSTQ 368
L +V KAKY G ++++ + W+ +Q G++ + G VGNG + +
Sbjct: 792 LCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQ------HGLDLLKQGTIWRVGNGHNIK 845
Query: 369 FWLEDWSGKGKLDGRYHRLYNLSRQKYSRIVDMGEWVGAGWR-WKFSWRRNLSAREKGWV 427
W W G+ + L ++ +R++ + E + R W + R++ E
Sbjct: 846 IWRHKWVPHGE------HINVLEKKGRNRLIYVNELINEENRCWNETLVRHVLKEED--- 896
Query: 428 QKMCEEVGEVVLVQNRSDVW-RWPPNSEGFYTVNNAYLFMQGDEGE-------------P 473
EV ++ L ++ D + W G +TV +AY G+
Sbjct: 897 ---ANEVLKIRLPNHQMDDFPAWHHEKSGLFTVKSAYKLAWNLSGKGVVQSSSSTATSGE 953
Query: 474 DAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAH 533
R+W A V + VK F WKL +++P + +RR + + + +C +C + E S H
Sbjct: 954 RKIWSRVWNAKVQAKVKIFIWKLAQDKLPTWENKRRRKI---EMNGTCPVCGTKGENSYH 1010
Query: 534 LMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGRNATQR-HGEYAVWLALTW 592
+ C+K L EA + +L G N QR H Y +W A
Sbjct: 1011 ATVECTKARALREALRAVWHLPGEDKFLWTGPDWLLILLDGVNEEQRTHIMYMLWRA--- 1067
Query: 593 SVWLLRNEILFG 604
W LRN+++ G
Sbjct: 1068 --WYLRNDLIHG 1077
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 127 bits (320), Expect = 8e-28
Identities = 99/396 (25%), Positives = 175/396 (44%), Gaps = 33/396 (8%)
Query: 223 GEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICK 282
G+ ++ AL P V +S FK+P G+ E + ++ NF W + +R I WV+W+R+
Sbjct: 1170 GKEIMLKSVALAMP-VYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQY 1228
Query: 283 PKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESPWWRDVQA 342
K GGLG +D FN A+L K WR + NSL+ +V+KA+Y + I+++ +
Sbjct: 1229 SKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSY 1288
Query: 343 ARVD-MGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSR-QKYSRIVD 400
+ GI + G ++G+G + + L++ +D R N K I +
Sbjct: 1289 GWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-----IVDSHPPRPLNTEETYKEMTINN 1343
Query: 401 MGEWVGAGWRWKFS-WRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTV 459
+ E G+ + W S + + + G++ ++ + + D W N+ G YTV
Sbjct: 1344 LFERKGSYYFWDDSKISQFVDQSDHGFIHRI------YLAKSKKPDKIIWNYNTTGEYTV 1397
Query: 460 NNAYLFMQGDEGEPDAALK----------RLWAAPVPSNVKAFAWKLMLNRIPCRQQLQR 509
+ Y + D A+ R+W P+ +K F W+ + + ++L
Sbjct: 1398 RSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTT 1457
Query: 510 RGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRL--NSIYAPSLGPISEHF 567
RG+ + D SC CH E E+ H + +C W ++ L N + + +
Sbjct: 1458 RGM---RIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 1514
Query: 568 LHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
L+F + H VW L W +W RN ++F
Sbjct: 1515 LNFV-QDTTMSDFHKLLPVW--LIWRIWKARNNVVF 1547
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 127 bits (320), Expect = 8e-28
Identities = 90/334 (26%), Positives = 147/334 (43%), Gaps = 32/334 (9%)
Query: 225 GLLD--SKCALVSPAVLFL-SYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERIC 281
GLL K LV+ + +++ ++ +P + I F W G +R+ V WE +C
Sbjct: 504 GLLSYGGKAILVNSSPMYMMGFYMLPEQTHQRMDSIRSRFFWEGIERKRKYHMVKWEALC 563
Query: 282 KPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIE-------S 334
+PKDFGGLG D N +L K ++ C +++ KY G S
Sbjct: 564 RPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLRRKYMMNGGGFFQSSTEGCS 623
Query: 335 PWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQK 394
+WR + + +W + G +G+G +T+FW + W G L ++ +Y++
Sbjct: 624 QFWRGLHEVK------HWLKLGSCYDLGDGSATRFWDDVWLGDTPLKIKFPYIYSI---- 673
Query: 395 YSRIVDMGEWVGAGWR---WKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPP 451
+ D G+ V W W+ RR+L A E +++ ++ V L +R D RW
Sbjct: 674 ---VADPGKTVSQLWSSDGWRIDLRRSLGAEELVEWEQLLADLANVHLSTDR-DRMRWKL 729
Query: 452 NSEGFYTVNNAYLFMQGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRG 511
G ++ + Y M G D ++ LW P+P +K F W ++ RI QL++
Sbjct: 730 TKSGQFSTKSLYREMTFG-GIRDIKMQELWKTPMPLKIKIFVWLMLKGRIQAAHQLKK-- 786
Query: 512 VIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLW 545
+ D C LC E E HLM C+ LW
Sbjct: 787 -MKWNGDPLCKLCGAE-EDVDHLMFKCAPARFLW 818
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 126 bits (317), Expect = 2e-27
Identities = 109/414 (26%), Positives = 176/414 (42%), Gaps = 54/414 (13%)
Query: 216 AKAFIFRGEGLLDS-------KCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPE 268
AK I GE L S K + + V + FK P V + ++ NF W
Sbjct: 1257 AKRVILWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPESVCDDLTKMTRNFWWVADNG 1316
Query: 269 ERRIAWVSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQP 328
RR W +W+ + K K GGLG +D+ FN A+L WR + NSL QV+KAKY
Sbjct: 1317 RRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLAPQAWRLIEFPNSLCAQVLKAKYFPH 1376
Query: 329 GRIIE-------SPWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLD 381
G + + SP W ++ G++ + G+ +GNG+S + W + W K
Sbjct: 1377 GSLTDTTFSANASPTWHGIEY------GLDLLKKGIIWRIGNGNSVRIWRDPWIPK---- 1426
Query: 382 GRYHRLYNLSRQKYSRIVDMG-EWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLV 440
+LSR+ S + +WV +W SA+ + K+ ++ + + +
Sbjct: 1427 -------DLSRRPVSSKANCRLKWVSDLIAEDGTWD---SAKINQYFLKIDADIIQKICI 1476
Query: 441 QNR--SDVWRWPPNSEGFYTVNNAYLF------MQGDEGEPDAALKR----LWAAPVPSN 488
R D W P+ G ++V +AY M + L + +W VP
Sbjct: 1477 SARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQK 1536
Query: 489 VKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEAC 548
V+ FAW++ N + + ++R + + DV C +C E E + H + C LW +
Sbjct: 1537 VRIFAWRVASNSLATMENKKKRNL--ERFDV-CGICDREKEDAGHALCCCVHANSLWVSM 1593
Query: 549 NTRLNSIYAPSLGPISEHFLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEIL 602
+ + SI SL S F +F E A+ L + W W +RNE++
Sbjct: 1594 H-KSGSI---SLDVKSIQFDNFWLFDCLEKLSEYERALVLMIIWRNWFVRNEVM 1643
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 125 bits (315), Expect = 3e-27
Identities = 103/388 (26%), Positives = 168/388 (42%), Gaps = 27/388 (6%)
Query: 223 GEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICK 282
G L+ L S + +S++++P GV++ FLW R+ V+W +C
Sbjct: 593 GGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCS 652
Query: 283 PKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKY--DQP-----GRIIESP 335
P+D GGLG+ D N A+LGK WR L + W ++I AKY D+P + S
Sbjct: 653 PRDQGGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKYCSDKPLSGLRLKAGSSH 711
Query: 336 WWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQKY 395
+W+ V + D F + K+VGNG+ T FW + W G L ++ LY + K
Sbjct: 712 FWQGVMEVKDD------FFSFCTKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITKR 765
Query: 396 SRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEG 455
I D+ G +RR+L + +K+ + LV+N D W + +G
Sbjct: 766 ITIADLNR-KGIDC---MKFRRDLHGDKLRDWRKIVNSWEGLNLVENCKDKLWWTLSKDG 821
Query: 456 FYTVNNAYLFMQGDEGEPDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDA 515
+TV + Y ++ + K++W VP ++ F W N+I + L +RG
Sbjct: 822 KFTVRSFYRALKLQ--QTSFPNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGW--R 877
Query: 516 QSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLGPISEHFLHFPHHGR 575
+ D C C ++VET HL C +W LN S + ++
Sbjct: 878 KGDNKCQFC-DKVETVQHLFFDCPLARLIWNIIACALNVKPVLSRQDLFGSWI----QSM 932
Query: 576 NATQRHGEYAVWLALTWSVWLLRNEILF 603
+ ++ A+ WS+W RN+ F
Sbjct: 933 DKFTKNLVIVGIAAVLWSIWKCRNKACF 960
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 125 bits (315), Expect = 3e-27
Identities = 101/397 (25%), Positives = 167/397 (41%), Gaps = 48/397 (12%)
Query: 230 KCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGGL 289
K ++ V +S FK+P M +F W + +R+I W+SWE++C PK+ GGL
Sbjct: 642 KAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGL 701
Query: 290 GLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESP-------WWRDVQA 342
G +D FN A+L K WR L + L+ ++IK++Y G ++S WR +
Sbjct: 702 GFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSI-- 759
Query: 343 ARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQKYSRIVDMG 402
+ G + GL K VGNG S + W++ W L R + N + D+
Sbjct: 760 ----LHGRDLLCRGLVKRVGNGKSIRVWIDYWLDDNGL--RAPWIKNPIINVDLLVSDLI 813
Query: 403 EWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNA 462
++ WR L E+ + ++ E V + D W W N G Y+V
Sbjct: 814 DYEKRDWR--------LDKLEEQFFPDDVVKIRENRPVVSLDDFWIWKHNKSGDYSVKLG 865
Query: 463 YLFMQGDEGEPDAALK------------RLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRR 510
Y ++ ++ A++ ++W +K F WK++ IP L R
Sbjct: 866 Y-WLASNQNLGQVAIEAMMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYR 924
Query: 511 GVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSL----GPISEH 566
G+ + D C C E E+ H++ SCS +W +++I+ P L G + +
Sbjct: 925 GM---KLDSRCQTCGCEGESIQHVLFSCSFPRQVW-----AMSNIHVPLLGFECGSVYAN 976
Query: 567 FLHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
HF + N + + W +W RN F
Sbjct: 977 LYHFLINRDNLKWPVELRRSFPWIIWRIWKNRNLFFF 1013
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 124 bits (311), Expect = 9e-27
Identities = 98/396 (24%), Positives = 174/396 (43%), Gaps = 33/396 (8%)
Query: 223 GEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICK 282
G+ ++ AL P V +S FK+P G+ E + ++ NF W + +R I WV+W+R+
Sbjct: 944 GKEIMLKSVALAMP-VYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQY 1002
Query: 283 PKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESPWWRDVQA 342
K GGLG +D FN A+L K WR + NSL+ +V+KA+Y + I+++ +
Sbjct: 1003 SKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSY 1062
Query: 343 ARVD-MGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSR-QKYSRIVD 400
+ GI + G ++G+G + + L++ +D R N K I +
Sbjct: 1063 GWASLLDGIALLKKGTRHLIGDGQNIRIGLDN-----IVDSHPPRPLNTEETYKEMTINN 1117
Query: 401 MGEWVGAGWRWKFS-WRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTV 459
+ E G+ + W S + + + G++ ++ + + D W N+ G YTV
Sbjct: 1118 LFERKGSYYFWDDSKISQFVDQSDHGFIHRI------YLAKSKKPDKIIWNYNTTGEYTV 1171
Query: 460 NNAYLFMQGDEGEPDAALK----------RLWAAPVPSNVKAFAWKLMLNRIPCRQQLQR 509
+ Y + D A+ R+W P+ +K F W+ + + ++L
Sbjct: 1172 RSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTT 1231
Query: 510 RGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRL--NSIYAPSLGPISEHF 567
RG+ + D C CH E E+ H + +C W ++ L N + + +
Sbjct: 1232 RGM---RIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNI 1288
Query: 568 LHFPHHGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
L+F + H VW L W +W RN ++F
Sbjct: 1289 LNFV-QDTTMSDFHKLLPVW--LIWRIWKARNNVVF 1321
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 122 bits (306), Expect = 3e-26
Identities = 95/357 (26%), Positives = 154/357 (42%), Gaps = 50/357 (14%)
Query: 216 AKAFIFRGEGLLDS-------KCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPE 268
AK I GE L S K + + V + FK P V E ++ NF WG
Sbjct: 1413 AKRVIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNG 1472
Query: 269 ERRIAWVSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQP 328
RR W +W+ + K K GGLG +D+ FN A+L + WR + NSL QV+KAKY
Sbjct: 1473 RRRTHWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFPH 1532
Query: 329 GRIIE-------SPWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLD 381
G + + SP W ++ G++ + G+ +GNG+S + W + W +
Sbjct: 1533 GSLTDTTFSANASPTWHGIEY------GLDLLKKGIIWRIGNGNSVRIWRDPWIPR---- 1582
Query: 382 GRYHRLYNLSRQKYSRIVDMG-EWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLV 440
+LSR+ S + +WV +W SA+ + K+ ++ + + +
Sbjct: 1583 -------DLSRRPVSSKANCRLKWVSDLIAEDGTWD---SAKINQYFLKIDADIIQKICI 1632
Query: 441 QNR--SDVWRWPPNSEGFYTVNNAYLF------MQGDEGEPDAALKR----LWAAPVPSN 488
R D W P+ G ++V +AY M + L + +W VP
Sbjct: 1633 SARLEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQK 1692
Query: 489 VKAFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLW 545
V+ FAW++ N + + ++R + + DV C +C E E + H + C LW
Sbjct: 1693 VRIFAWRVASNSLATMENKKKRNL--ERFDV-CGICDREKEDAGHALCRCVHANSLW 1746
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 121 bits (303), Expect = 7e-26
Identities = 93/334 (27%), Positives = 147/334 (43%), Gaps = 38/334 (11%)
Query: 229 SKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGG 288
+K L S V +S +PV R FLWG + E+++ +SW +ICKPK GG
Sbjct: 656 TKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGG 715
Query: 289 LGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESPW----------WR 338
+GL+ N A++ K WR L D SLW +V++ KY + G + ++ W WR
Sbjct: 716 IGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY-KVGGVQDTSWLKPQPRWSSTWR 774
Query: 339 DVQAA--RVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQKYS 396
V V + G+ W V G+G + +FWL+ W L L +
Sbjct: 775 SVAVGLREVVVKGVGW-------VPGDGCTIRFWLDRW----LLQEPLVELGTDMIPEGE 823
Query: 397 RI-VDMGEWV-GAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSE 454
RI V W+ G+GW + L V++ V V + N ++ W +
Sbjct: 824 RIKVAADYWLPGSGWNLEI-----LGLYLPETVKRRLLSVVVQVFLGNGDEI-SWKGTQD 877
Query: 455 GFYTVNNAYLFMQGDEGE---PDAALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRG 511
G +TV +AY +QGD G+ + R+W P V+ F W + N I + RR
Sbjct: 878 GAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRH 937
Query: 512 VIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLW 545
+ + C++C+ ET H++ C + +W
Sbjct: 938 L---SENAICSVCNGAEETILHVLRDCPAMEPIW 968
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 119 bits (299), Expect = 2e-25
Identities = 95/415 (22%), Positives = 164/415 (38%), Gaps = 63/415 (15%)
Query: 223 GEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICK 282
G+ +L A+ P +S FKIP + ++ + +M F W E R + W +W + +
Sbjct: 788 GKEILLKAVAMALPTYT-MSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSR 846
Query: 283 PKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESPW------ 336
PK GGLG K+ FN A+LGK WR + + +SL +V K++Y + +P
Sbjct: 847 PKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSF 906
Query: 337 -WRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSG-----KGKLDGRYHRLYNL 390
W+ + A+V + G+ V+GNG++ W + W G + R H +
Sbjct: 907 AWKSIYEAQV------LIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQY 960
Query: 391 SRQKYSRIVDMGEWVGAGWRWKF-------SWRRNLSAREKGWVQKMCEEVGEVVLVQNR 443
+ + D+ G W W + + N+ A G +
Sbjct: 961 AANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGG--------------KET 1006
Query: 444 SDVWRWPPNSEGFYTVNNAYLFMQ---GDEGEP--------DAALKRLWAAPVPSNVKAF 492
D + W + G Y+V + Y M P D +++W VP + F
Sbjct: 1007 RDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHF 1066
Query: 493 AWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRL 552
W+ + N + L R + + SC C ET HL+ C W +
Sbjct: 1067 LWRCVNNCLSVASNLAYRHL---AREKSCVRCPSHGETVNHLLFKCPFARLTW-----AI 1118
Query: 553 NSIYAPSLGPISEHFLHFPHH----GRNATQRHGEYAVWLALTWSVWLLRNEILF 603
+ + AP G +E HH ++ + +A+ + W +W RN+++F
Sbjct: 1119 SPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVF 1173
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 115 bits (289), Expect = 3e-24
Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 43/321 (13%)
Query: 241 LSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGGLGLKDWLPFNTA 300
+ FK+P +E ++++ NF WG E+++ W++WE++ PK GGLG +D FN A
Sbjct: 793 MGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQA 852
Query: 301 VLGKCCWRYLCDTNSLWCQVIKAKYDQPGRI-------IESPWWRDVQAARVDMGGINWF 353
+L + WR + +SL +V+KAKY G I + SP W+ + + G+
Sbjct: 853 LLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGI------VHGLELL 906
Query: 354 EAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLSRQKYSRIVDMGEWVGAGWR-WK 412
+ GL +G+G T+ W W G+ L L ++ ++R++ + E + + W
Sbjct: 907 KKGLIWRIGDGSKTKIWRNHWVAHGE------NLKILEKKTWNRVIYVRELIVTDTKTWN 960
Query: 413 FSWRRNLSAREKGWVQKMCEEVGEVVLVQ-NRSDVWRWPPNSEGFYTVNNAYLF------ 465
R++ E +E+ ++ + Q D W G ++V + Y
Sbjct: 961 EPLIRHIIREED------ADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAWNLAR 1014
Query: 466 -----MQGDEGEPDA--ALKRLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDAQSD 518
G D +W A V V+ FAWKL +R+ + ++R + +
Sbjct: 1015 KTSEQASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLATWENKKKRKI---EMF 1071
Query: 519 VSCALCHEEVETSAHLMLSCS 539
+C +C ++ ET H + C+
Sbjct: 1072 GTCPICGQKEETGFHATVECT 1092
>ref|NP_909558.1| putative reverse transcriptase [Oryza sativa]
gi|14018103|gb|AAK52166.1| putative reverse
transcriptase [Oryza sativa]
Length = 1185
Score = 115 bits (288), Expect = 4e-24
Identities = 94/356 (26%), Positives = 143/356 (39%), Gaps = 51/356 (14%)
Query: 215 KAKAFIFRGEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAW 274
K K G+ +L A P V +S F+IP + + F WG RRI W
Sbjct: 598 KEKMLSTGGKEVLIKSIAQAIP-VFAMSVFRIPKKICDCISEAIARFWWGDDENHRRIHW 656
Query: 275 VSWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIES 334
+W R+C PK GGLG +D FN A+L K WR+LCD +SL +V++ KY G I+ +
Sbjct: 657 KAWWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRA 716
Query: 335 -PWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFW---LEDWSGKGKLDGRYHRLYNL 390
P A + + G F+ G +G+G W L S GK+ L
Sbjct: 717 RPKKGSSYAWQSILSGSECFK-GYIWRIGDGSQVNIWEDSLIPSSSNGKV------LTPR 769
Query: 391 SRQKYSRIVDMGEWVGAGWR--------WKFSWRRNLSAREKGWVQKMCEEVGEVVLVQN 442
R +++ ++ V GW W R L ++ +
Sbjct: 770 GRNIITKVEELINPVSGGWDEDLIDTLFWPIDANRIL----------------QIPISAG 813
Query: 443 RSDVWRWPPNSEGFYTVNNAY-----LFMQGDEGEPDAALK-------RLWAAPVPSNVK 490
R D W G ++V +AY E PD A LW +P +K
Sbjct: 814 REDFVAWHHTRSGIFSVRSAYHCQWNAKFGSKERLPDGASSSSRPVWDNLWKLEIPPKIK 873
Query: 491 AFAWKLMLNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWE 546
FAW+++ IPC+ L + + C +C VE H++ +C + +W+
Sbjct: 874 IFAWRMLHGVIPCKGILADKHI---AVQGGCPVCSSGVEDIKHMVFTCRRAKLIWK 926
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 115 bits (287), Expect = 5e-24
Identities = 96/411 (23%), Positives = 183/411 (44%), Gaps = 50/411 (12%)
Query: 216 AKAFIFRGEGLLDSKCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWV 275
AK G+ +L A+ P V ++ F++ + + +M +F W ++++I W+
Sbjct: 510 AKTLSQGGKDILLKSIAMAFP-VYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWI 568
Query: 276 SWERICKPKDFGGLGLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIE-S 334
+++ PK GG G KD FN A+L K R D++SL Q++K++Y + +
Sbjct: 569 GAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSAT 628
Query: 335 PWWRDVQAARVDMGGINWFEAGLAKVVGNGDSTQFWLEDWSGKGKLDGRYHRLYNLS--- 391
R A + + G +GL K++GNG++T W+++W D + R +L
Sbjct: 629 KGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWI----FDDKPRRPESLQIMV 684
Query: 392 --RQKYSRIVDMGEWVGAGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRW 449
+ K S+++D W + R+L ++ +Q +C++ + +R D + W
Sbjct: 685 DIQLKVSQLID-----PFSRNWNLNMLRDLFPWKE--IQIICQQRP----MASRQDSFCW 733
Query: 450 PPNSEGFYTVNNAY----------LFMQGDEGEP--DAALKRLWAAPVPSNVKAFAWKLM 497
+ G YTV + Y +F + +E +P + ++W +K F WK++
Sbjct: 734 FGTNHGLYTVKSEYDLCSRQVHKQMFKEAEE-QPSLNPLFGKIWNLNSAPKIKVFLWKVL 792
Query: 498 LNRIPCRQQLQRRGVIDAQSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYA 557
+ +L+ RGV+ + C++C E+ ET H++ C +W L + +
Sbjct: 793 KGAVAVEDRLRTRGVL---IEDGCSMCPEKNETLNHILFQCPLARQVW-----ALTPMQS 844
Query: 558 PSLGPISEHFLHFPH-----HGRNATQRHGEYAVWLALTWSVWLLRNEILF 603
P+ G F + H H + + W + W +W RN+ LF
Sbjct: 845 PNHGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPW--IIWILWKNRNKRLF 893
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411640|pir||H84529 hypothetical protein
At2g15510 [imported] - Arabidopsis thaliana
Length = 1138
Score = 115 bits (287), Expect = 5e-24
Identities = 91/346 (26%), Positives = 149/346 (42%), Gaps = 34/346 (9%)
Query: 230 KCALVSPAVLFLSYFKIPVGVEKECQRIMWNFLWGGSPEERRIAWVSWERICKPKDFGGL 289
K ++ V +S FK+ K M +F W +R+ WVSWE++C K+ GGL
Sbjct: 570 KAVAMAMQVYAMSCFKLTKTTCKNLTSAMSDFWWNALEHKRKTHWVSWEKLCLAKESGGL 629
Query: 290 GLKDWLPFNTAVLGKCCWRYLCDTNSLWCQVIKAKYDQPGRIIESPWW-RDVQAARVDMG 348
G +D FN A+L K WR L + L+ + K++Y +E+ R A +
Sbjct: 630 GFRDIESFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEADLGVRPSYACCSILF 689
Query: 349 GINWFEAGLAKVVGNGDSTQFWLEDW--SGKGKLDGRYHRLYNLSRQKYSRIVDMGEWVG 406
G GL K VGNG S W++ W +L + H NL K + +++ +
Sbjct: 690 GRELLAKGLRKEVGNGKSLNVWMDPWIFDIAPRLPLQRHFSVNLD-LKVNDLINFED--- 745
Query: 407 AGWRWKFSWRRNLSAREKGWVQKMCEEVGEVVLVQNRSDVWRWPPNSEGFYTVNNAY--- 463
W+R+L E+ + E + + V N D W W G Y+V + Y
Sbjct: 746 ------RCWKRDL--LEELFYPTDVELITKRNPVVNMDDFWVWLHAKTGEYSVKSGYWLA 797
Query: 464 -------LFMQGDEGEPDAALK-RLWAAPVPSNVKAFAWKLMLNRIPCRQQLQRRGVIDA 515
L Q + LK ++W+ +K F W+++ +P Q+ RRG+
Sbjct: 798 FQSNKLDLIQQANLLPSTNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGM--- 854
Query: 516 QSDVSCALCHEEVETSAHLMLSCSKVLGLWEACNTRLNSIYAPSLG 561
D C +C +E E++ H++ +CS +W L+ + P G
Sbjct: 855 SIDPRCQICGDEGESTNHVLFTCSMARQVW-----ALSGVPTPEFG 895
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.336 0.146 0.539
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,120,459,429
Number of Sequences: 2540612
Number of extensions: 48469775
Number of successful extensions: 125084
Number of sequences better than 10.0: 306
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 124276
Number of HSP's gapped (non-prelim): 474
length of query: 611
length of database: 863,360,394
effective HSP length: 134
effective length of query: 477
effective length of database: 522,918,386
effective search space: 249432070122
effective search space used: 249432070122
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 78 (34.7 bits)
Lotus: description of TM0067a.8