BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0065.20
(196 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 199 4e-50
pir||T02206 hypothetical protein - common tobacco retrotransposo... 175 7e-43
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 166 3e-40
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 158 7e-38
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 154 1e-36
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe... 149 3e-35
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 149 6e-35
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa (japonica cultivar... 148 1e-34
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 147 1e-34
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 147 1e-34
gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cult... 147 2e-34
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 147 2e-34
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 146 3e-34
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 146 3e-34
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 146 4e-34
ref|XP_476137.1| putative polyprotein [Oryza sativa (japonica cu... 146 4e-34
gb|AAP53029.1| putative retrotransposon-related protein [Oryza s... 144 1e-33
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 144 1e-33
gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis ... 143 2e-33
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 143 3e-33
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 199 bits (506), Expect = 4e-50
Identities = 100/190 (52%), Positives = 129/190 (67%), Gaps = 3/190 (1%)
Query: 1 SSNGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSL 60
+SNGT L NV+H P I+ NLIS G+LDD+G+ FG G WK+TKG+LVVARG K +L
Sbjct: 337 TSNGTKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNL 396
Query: 61 YMV---AEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHCI 117
Y + +D + V E +S +WH+RLGHMS KG+ +A K K+S +K L C HC+
Sbjct: 397 YSLQSSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVHCL 456
Query: 118 LGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VYFLK 177
GKQR+VSF K E L L+H+DV GP V+SLGG+ Y+VTFIDD +RK+ VY LK
Sbjct: 457 AGKQRRVSFMSHPPTRKSEPLDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLK 516
Query: 178 NKSDVFSVFK 187
+KSDV VFK
Sbjct: 517 HKSDVLGVFK 526
>pir||T02206 hypothetical protein - common tobacco retrotransposon Tto1
gi|1167523|dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana
tabacum]
Length = 1338
Score = 175 bits (443), Expect = 7e-43
Identities = 91/188 (48%), Positives = 119/188 (62%), Gaps = 4/188 (2%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLYM 62
NG L +VRHVP ++ NLIS+ +LD+EGY TF G WK+TKG+L+VARG K+ LY+
Sbjct: 342 NGMKLLLRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYV 401
Query: 63 V---AEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHCILG 119
+ +I V E ++ +WH+RLGHMSEK M + K + L + L C C+ G
Sbjct: 402 TQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAG 461
Query: 120 KQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VYFLKNK 179
KQ +VSF + + L LVH+DV GP KSLGG+RY+VTFIDD +RK VY LK K
Sbjct: 462 KQNRVSFKRFPPSRRQNVLDLVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTK 520
Query: 180 SDVFSVFK 187
VF VFK
Sbjct: 521 DQVFQVFK 528
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 166 bits (420), Expect = 3e-40
Identities = 83/188 (44%), Positives = 126/188 (66%), Gaps = 6/188 (3%)
Query: 4 GTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLYM- 62
G L +VRHVP ++ NLIS LD +GY + F W++TKG+LV+A+G RG+LY
Sbjct: 345 GCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRT 404
Query: 63 ---VAEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHCILG 119
+ + ++ A + + S +WH+R+GHMSEKG++I+A K +S K + C++C+ G
Sbjct: 405 NAEICQGELNAAQDEI-SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFG 463
Query: 120 KQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VYFLKNK 179
KQ +VSF + + KL L LV++DV GP ++S+GG++Y+VTFIDD++RK+ VY LK K
Sbjct: 464 KQHRVSFQTSSER-KLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 180 SDVFSVFK 187
VF VF+
Sbjct: 523 DQVFQVFQ 530
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 158 bits (400), Expect = 7e-38
Identities = 85/191 (44%), Positives = 126/191 (65%), Gaps = 8/191 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKK-RGSLY 61
+GT+ T+ +VRHV G+K+NL+S G LD+ G K+ +G LVV +G+K +LY
Sbjct: 332 DGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLY 391
Query: 62 MVAEEDMIAVTEAV-----NSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHC 116
M+ E + +V +S+ +WHQ+LGHMS++GMKI+ + + L V L +CEHC
Sbjct: 392 MLKGETLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHC 451
Query: 117 ILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VYFL 176
I KQ ++ FS + + K+ L+LVH+DVW APV SLGG++Y+V+FIDD +R+ VY +
Sbjct: 452 ITSKQHRLKFSTSNSRGKV-VLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPI 509
Query: 177 KNKSDVFSVFK 187
K KSDVF+ FK
Sbjct: 510 KKKSDVFATFK 520
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 154 bits (390), Expect = 1e-36
Identities = 81/189 (42%), Positives = 122/189 (63%), Gaps = 8/189 (4%)
Query: 4 GTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLYM- 62
G L +VRHVP ++ NLIS LD +GY F W++TKG LV+A+G RG+LY
Sbjct: 346 GCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRT 405
Query: 63 ---VAEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHCILG 119
+ + ++ A E NS+ +WH+R+GH SEKG++I++ K +S K + C + + G
Sbjct: 406 NAEICQGELNAAHEE-NSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFG 464
Query: 120 KQRKVSFSKAG-RKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VYFLKN 178
KQ +VSF + RKS + L LV++DV GP ++S+GG++Y+VTFIDD++RK+ VY +
Sbjct: 465 KQHRVSFQTSSERKSNI--LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRA 522
Query: 179 KSDVFSVFK 187
K VF VF+
Sbjct: 523 KDQVFQVFQ 531
>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
erythrorhizon]
Length = 244
Score = 149 bits (377), Expect = 3e-35
Identities = 78/193 (40%), Positives = 117/193 (60%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLY- 61
+GT+ TL++VRH+ + +NLIS+ L+ G G KV + +LVV +G G+LY
Sbjct: 25 DGTIITLNDVRHIQDLHKNLISLRLLEKNGCKIVLEDGVLKVVRRSLVVMKGVSHGNLYP 84
Query: 62 ----MVAEEDMIAVT---EAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
MV + + V + + IWH RLGHMSEKG+ +++ +G + N+K + CE
Sbjct: 85 LVGTMVTGDLAVGVVGHKDQTECTMIWHMRLGHMSEKGLSLLSGQGLLKNMKKSCMEFCE 144
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
H + GK ++ F + KS+ L VHTD+WGPA V S GS Y+VTF+DD +R +Y
Sbjct: 145 HWVYGKTHRLKFFTSKHKSR-GLLDYVHTDLWGPAKVNSKDGSWYFVTFVDDYSRYAWIY 203
Query: 175 FLKNKSDVFSVFK 187
FLK+K++VF +FK
Sbjct: 204 FLKHKNEVFDIFK 216
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301697|pir||B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1335
Score = 149 bits (375), Expect = 6e-35
Identities = 78/191 (40%), Positives = 120/191 (61%), Gaps = 6/191 (3%)
Query: 1 SSNGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSL 60
+S+G+ L +VR++P + RNLIS+G L+D G G K+ KG + +G+KR +L
Sbjct: 333 NSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTL 392
Query: 61 YMV----AEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHC 116
Y++ E + + E + +++WH RLGHMS+KGM+I+ KG + +L CE C
Sbjct: 393 YILDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDC 452
Query: 117 ILGKQRKVSFSKAGRKSKLEKLKLVHTDVWG-PAPVKSLGGSRYYVTFIDDSTRKV*VYF 175
+ GKQ +VSF+ A +K EKL VH+D+WG P SLG S+Y+++F+DD +RKV +YF
Sbjct: 453 VYGKQHRVSFAPAQHVTK-EKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYF 511
Query: 176 LKNKSDVFSVF 186
L+ K + F F
Sbjct: 512 LRKKDEAFEKF 522
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa (japonica cultivar-group)]
gi|50922629|ref|XP_471675.1| OSJNBa0093P23.9 [Oryza
sativa (japonica cultivar-group)]
Length = 944
Score = 148 bits (373), Expect = 1e-34
Identities = 81/193 (41%), Positives = 117/193 (59%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGK-KRGSLY 61
+G + TL +VRH+P +KR+LIS+ LD +GY + G G KVTKG+LVV + K +LY
Sbjct: 182 DGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 241
Query: 62 MVAEEDMIAVTEAVNSS-------SIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
+ ++ AV+ S ++WH RLGHMSE G+ ++ +G + L CE
Sbjct: 242 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCE 301
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HCI GK ++V F+ + ++ L VH+D+WGPA S GG+RY +T +DD +RKV Y
Sbjct: 302 HCIFGKHKRVKFNTSTHTTE-GILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPY 360
Query: 175 FLKNKSDVFSVFK 187
FLK+K F VFK
Sbjct: 361 FLKHKYQAFDVFK 373
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 147 bits (372), Expect = 1e-34
Identities = 80/193 (41%), Positives = 117/193 (60%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGK-KRGSLY 61
+G + TL +VRH+P +KR+LIS+ LD +GY + G G KVTKG+LVV + K +LY
Sbjct: 350 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLY 409
Query: 62 MVAEEDMIAVTEAVNSS-------SIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
+ ++ V+ S ++WH RLGHMSE G+ ++ +G + L CE
Sbjct: 410 HLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCE 469
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HCI GK ++V F+ + ++ L VH+D+WGPA S GG+RY +T +DD +RKV Y
Sbjct: 470 HCIFGKHKRVKFNTSTHTTE-GILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPY 528
Query: 175 FLKNKSDVFSVFK 187
FLK+K F+VFK
Sbjct: 529 FLKHKYQAFNVFK 541
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 147 bits (372), Expect = 1e-34
Identities = 81/193 (41%), Positives = 113/193 (57%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLYM 62
+G TL +VRH+PG+ RNLIS+ LD EGY + GG KV+KG+LV G +
Sbjct: 343 DGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLY 402
Query: 63 VAEEDMI--AVTEAVNS------SSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
V + +VT A S +++WH RLGHMSE GM + + + + CE
Sbjct: 403 VLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCE 462
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HC+ GK ++V F+ + ++K L VHTD+WGP+ LGG+RY +T IDD +RKV Y
Sbjct: 463 HCVFGKHKRVKFNTSVHRTK-GILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPY 521
Query: 175 FLKNKSDVFSVFK 187
FLK+K D F+ FK
Sbjct: 522 FLKHKDDTFAAFK 534
>gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1241
Score = 147 bits (370), Expect = 2e-34
Identities = 81/193 (41%), Positives = 117/193 (59%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGK-KRGSLY 61
+G + TL +VRH+P +KR+LIS+ LD +GY + G G KVTKG+LVV + K +LY
Sbjct: 259 DGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLY 318
Query: 62 MVAEEDMIAVTEAVNSS-------SIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
+ ++ AV+ S ++WH RLGHMSE G+ ++ +G + L CE
Sbjct: 319 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCE 378
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HCI GK ++V F+ + ++ L VH+D+WGPA S GG+RY +T +DD +RKV Y
Sbjct: 379 HCIFGKHKRVKFNTSTHTTE-GILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPY 437
Query: 175 FLKNKSDVFSVFK 187
FLK+K F VFK
Sbjct: 438 FLKHKYQAFDVFK 450
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 147 bits (370), Expect = 2e-34
Identities = 80/193 (41%), Positives = 117/193 (60%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGK-KRGSLY 61
+G + TL +VRH+P +KR+LIS+ LD +GY + G G KVTKG+LVV + K +LY
Sbjct: 557 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 616
Query: 62 MVAEEDMIAVTEAVNSS-------SIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
+ ++ AV+ S ++WH RLGHM+E G+ ++ +G + L CE
Sbjct: 617 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 676
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HCI GK ++V F+ + ++ L VH+D+WGPA S GG+RY +T +DD +RKV Y
Sbjct: 677 HCIFGKHKRVKFNTSTHTTE-GILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPY 735
Query: 175 FLKNKSDVFSVFK 187
FLK+K F VFK
Sbjct: 736 FLKHKYQAFDVFK 748
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 146 bits (369), Expect = 3e-34
Identities = 80/193 (41%), Positives = 116/193 (59%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGS-LY 61
+G TL +VRH+PG+ RNLIS+ LD EGY + GG KV+KG+LV G + LY
Sbjct: 343 DGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLY 402
Query: 62 MVAEEDM------IAVT-EAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
++ + AVT + + +++WH RLGHMSE GM + + + ++ CE
Sbjct: 403 VLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCE 462
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HC+ GK ++V F+ + ++K L VH D+WGP+ SLGG+RY +T IDD +RK Y
Sbjct: 463 HCVFGKHKRVKFNTSVHRTK-GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPY 521
Query: 175 FLKNKSDVFSVFK 187
FLK+K D F+ FK
Sbjct: 522 FLKHKDDTFAAFK 534
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1373
Score = 146 bits (369), Expect = 3e-34
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 1 SSNGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKK---- 56
+ +G TL NVR++PG+ RNLIS+ LD EGY + G KV+KG+LV +G
Sbjct: 339 TDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAK 398
Query: 57 ----RGSLYMVAEEDMIAVT-EAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLG 111
RG ++ A+T + + +++WH RLGHMS GM + + + +
Sbjct: 399 LYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIK 458
Query: 112 VCEHCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV 171
CEHCI GK ++V F+ + +K L VH D+WGP+ SLGG+RY +T IDD +RKV
Sbjct: 459 FCEHCIFGKHKRVQFNTSVHTTK-GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKV 517
Query: 172 *VYFLKNKSDVFSVFK 187
YFLK+K D F+ FK
Sbjct: 518 WPYFLKHKDDTFTAFK 533
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 146 bits (368), Expect = 4e-34
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 6/191 (3%)
Query: 1 SSNGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSL 60
+ NG TL NVR++P + RNL+S+G + G+ G ++ GN V+ G++ +L
Sbjct: 364 NDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGNQVLLEGRRYDTL 423
Query: 61 YMV----AEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHC 116
Y++ A ++ +AV A + + +WH+RL HMS+K M ++ KG + K L CE C
Sbjct: 424 YILHGKPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDC 483
Query: 117 ILGKQRKVSFSKAGRKSKLEKLKLVHTDVWG-PAPVKSLGGSRYYVTFIDDSTRKV*VYF 175
I G+ +K+ F+ A +K +KL+ VH+D+WG P SLG +Y+++FIDD TRKV VYF
Sbjct: 484 IYGRAKKIGFNLAQHDTK-KKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYF 542
Query: 176 LKNKSDVFSVF 186
LK K + F F
Sbjct: 543 LKTKDEAFEKF 553
>ref|XP_476137.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46576026|gb|AAT01387.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1175
Score = 146 bits (368), Expect = 4e-34
Identities = 82/193 (42%), Positives = 116/193 (59%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGS-LY 61
+G TL +VRH+P + RNLIS+ LD EGY + GG KV+KG+LV G + LY
Sbjct: 238 DGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLY 297
Query: 62 MVAEEDMIA-VTEAVNS------SSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
++ + VT AV S +++WH RLGHMSE GM + + + ++ CE
Sbjct: 298 VLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCE 357
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HC+ GK ++V F+ + ++K L VH D+WGP+ SLGG+RY +T IDD +RKV Y
Sbjct: 358 HCVFGKHKRVKFNTSVHRTK-GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPY 416
Query: 175 FLKNKSDVFSVFK 187
FLK+K D F+ FK
Sbjct: 417 FLKHKDDTFAAFK 429
>gb|AAP53029.1| putative retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|37532880|ref|NP_920742.1| putative
retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|16905223|gb|AAL31093.1| putative
retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 144 bits (364), Expect = 1e-33
Identities = 78/193 (40%), Positives = 113/193 (58%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGS-LY 61
+G TL +VRH+PG+ RNLIS+ LD EGY + GG KV+KG+LV G + LY
Sbjct: 340 DGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLY 399
Query: 62 MVAEEDMIAVTEAV-------NSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
++ + A + +++WH RLGHMSE GM + + + ++ CE
Sbjct: 400 VLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCE 459
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HC+ GK ++V F+ + ++K L VH D+WGP+ SLGG+ Y +T IDD +RKV Y
Sbjct: 460 HCVFGKHKRVKFNTSVHRTK-GILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPY 518
Query: 175 FLKNKSDVFSVFK 187
FLK+K D F+ FK
Sbjct: 519 FLKHKDDTFAAFK 531
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 144 bits (363), Expect = 1e-33
Identities = 80/193 (41%), Positives = 116/193 (59%), Gaps = 9/193 (4%)
Query: 3 NGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGK-KRGSLY 61
+G + TL +VRH+P +KR+LIS+ LD +GY + G G KVTKG+LVV + K +LY
Sbjct: 385 DGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 444
Query: 62 MVAEEDMIAVTEAVNSS-------SIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCE 114
+ ++ AV+ S ++WH RLGHMSE G+ ++ + + L CE
Sbjct: 445 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCE 504
Query: 115 HCILGKQRKVSFSKAGRKSKLEKLKLVHTDVWGPAPVKSLGGSRYYVTFIDDSTRKV*VY 174
HCI GK ++V F+ + ++ L VH+D+WGPA S GG+RY +T +DD +RKV Y
Sbjct: 505 HCIFGKHKRVKFNTSTHTTE-GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPY 563
Query: 175 FLKNKSDVFSVFK 187
FLK+K F VFK
Sbjct: 564 FLKHKYQAFDVFK 576
>gb|AAF19226.1| Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
gi|25301707|pir||E86490 hypothetical protein F28L22.3 -
Arabidopsis thaliana
Length = 1356
Score = 143 bits (361), Expect = 2e-33
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 8/189 (4%)
Query: 4 GTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSLYM- 62
GT+ L NV++VP ++RNLIS G LD GY G G + K N RG LY+
Sbjct: 359 GTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVL 418
Query: 63 ----VAEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHCIL 118
V E A T+ V ++ +WH RLGHMS +K++A KG + + +L CEHC++
Sbjct: 419 DGSTVMSELCNAETDKVKTA-LWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVM 477
Query: 119 GKQRKVSFSKAGRKSKLEKLKLVHTDVWG-PAPVKSLGGSRYYVTFIDDSTRKV*VYFLK 177
GK +KVSF+ G+ + + L VH D+WG P S+ G +Y+++ IDD TRKV +YFLK
Sbjct: 478 GKSKKVSFN-VGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLK 536
Query: 178 NKSDVFSVF 186
+K + F F
Sbjct: 537 SKDETFDKF 545
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 143 bits (360), Expect = 3e-33
Identities = 76/191 (39%), Positives = 115/191 (59%), Gaps = 6/191 (3%)
Query: 1 SSNGTLWTLHNVRHVPGIKRNLISIGQLDDEGYHTTFGGGAWKVTKGNLVVARGKKRGSL 60
+S+G L NVR++P + RNL+S+G + GY G ++ GN V+ G++ +L
Sbjct: 357 NSDGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTGRRYDTL 416
Query: 61 YMV----AEEDMIAVTEAVNSSSIWHQRLGHMSEKGMKIMASKGKMSNLKHVDLGVCEHC 116
Y++ + +AV + + + +WHQRL HMS+K M+I+ KG + K L VCE C
Sbjct: 417 YLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476
Query: 117 ILGKQRKVSFSKAGRKSKLEKLKLVHTDVWG-PAPVKSLGGSRYYVTFIDDSTRKV*VYF 175
I GK ++ SFS A +K EKL+ +H+D+WG P SLG +Y+++ IDD TRKV VYF
Sbjct: 477 IYGKAKRKSFSLAHHDTK-EKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYF 535
Query: 176 LKNKSDVFSVF 186
+K K + F F
Sbjct: 536 MKTKDEAFEKF 546
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,714,490
Number of Sequences: 2540612
Number of extensions: 12381233
Number of successful extensions: 26288
Number of sequences better than 10.0: 667
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 24813
Number of HSP's gapped (non-prelim): 724
length of query: 196
length of database: 863,360,394
effective HSP length: 121
effective length of query: 75
effective length of database: 555,946,342
effective search space: 41695975650
effective search space used: 41695975650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0065.20