BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0065.12
(1309 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] gi|1... 346 3e-93
ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultiv... 345 4e-93
ref|NP_916849.1| retrovirus-related pol polyprotein from transpo... 343 2e-92
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 338 5e-91
gb|AAK29467.1| polyprotein-like [Lycopersicon chilense] 337 1e-90
gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cult... 333 2e-89
emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultiva... 330 2e-88
ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cu... 326 3e-87
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 322 4e-86
ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sa... 321 9e-86
ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Or... 316 3e-84
gb|AAP53029.1| putative retrotransposon-related protein [Oryza s... 315 6e-84
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 312 4e-83
ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cu... 309 5e-82
gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cult... 300 3e-79
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] gi... 292 4e-77
ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cu... 289 4e-76
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 280 2e-73
ref|XP_476137.1| putative polyprotein [Oryza sativa (japonica cu... 280 3e-73
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 279 4e-73
>emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
gi|130582|sp|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease]
Length = 1328
Score = 346 bits (888), Expect = 3e-93
Identities = 194/512 (37%), Positives = 305/512 (58%), Gaps = 25/512 (4%)
Query: 1 GAKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALR--DEKPTDIATVDWNEMKEKAASL 58
G K+EV +F G F W RR++DLL QQ L K L +KP + DW ++ E+AAS
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 59 IRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHV 118
IRL +SDD++N+I+D T + +W +LESLYMSKTL NKL+ K++LY+L M EG + +H+
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 119 YAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQH 178
FN ++ L L VK+++EDKAI+LL SLP SYD+L TT+ +GK +I+L ++S LL +
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLN 182
Query: 179 AQRRQSVEEGGGSSGKCLFVKG-GQGRARGKGKAVDSGKKKRSKSKDR-KTAECYSCKQI 236
+ R+ E + G+ L +G G+ R SG + +SK++ + + CY+C Q
Sbjct: 183 EKMRKKPE----NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQP 238
Query: 237 GHWKRDCPN-RPGK-----SSNSNSSANVVQSDGSC-----SEEDLLCVSSVKCTDAWVL 285
GH+KRDCPN R GK N +++A +VQ++ + EE+ + +S + WV+
Sbjct: 239 GHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE--SEWVV 296
Query: 286 DSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYV 345
D+ S+H TP R+ F + GDFG V +G+ I G+ + I + G L VR+V
Sbjct: 297 DTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHV 356
Query: 346 PEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDV 405
P++ N+IS L +GY +S R++KG++ + + G +Y+ G++
Sbjct: 357 PDLRMNLISGIALDRDGY--ESYFANQKWRLTKGSLVIAKGV-ARGTLYRTNAEICQGEL 413
Query: 406 ASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKT 465
+ + D+ + +WH R+GH+SE+G+ L K++L+ + T+ C YC+ GKQ RV F+T
Sbjct: 414 NAAQ-DEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQT 472
Query: 466 GQHKTKGILDYVHSDVWGPTKEPSVGGFRYFL 497
+ ILD V+SDV GP + S+GG +YF+
Sbjct: 473 SSERKLNILDLVYSDVCGPMEIESMGGNKYFV 504
Score = 259 bits (663), Expect = 3e-67
Identities = 131/236 (55%), Positives = 164/236 (68%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K+G+ FSPVV+ TSIR +L+L AS D+ +EQ+DVKT FLHG+LEE+IYMEQ
Sbjct: 881 KGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQ 940
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G +VCKL +SLYGLKQ+PRQ Y +FDS+M Y + D CVY + +
Sbjct: 941 PEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSEN 1000
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+FI LLLYVDDMLI + +LK L K FDMKDLG A++ILGM+I R+R ++KLWL
Sbjct: 1001 NFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWL 1060
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+ Y+E VL RF+M PVSTPLA H KLS C T E M+K+PY+SAVG
Sbjct: 1061 SQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVG 1116
>ref|XP_474090.1| OSJNBa0033G05.13 [Oryza sativa (japonica cultivar-group)]
gi|38344889|emb|CAD41912.2| OSJNBa0033G05.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1181
Score = 345 bits (886), Expect = 4e-93
Identities = 196/508 (38%), Positives = 298/508 (58%), Gaps = 28/508 (5%)
Query: 15 FGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDW-NEMKE---KAASLIRLCVSDDLMNH 70
F LW +++ +LAQQ L AL D T DW N+ K+ KA S I L +S++++
Sbjct: 17 FSLWQVKMRAVLAQQELDDALSG---FDKRTQDWSNDEKKRDRKAMSYIHLHLSNNILQE 73
Query: 71 ILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTR 130
+L T +W KLE + M+K L +K+ KQ+L+ K+Q+ G + H+ AF I+ADL
Sbjct: 74 VLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLES 133
Query: 131 LRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSV-EEGG 189
+ VK D++D A+ILL SLP SY + T+ Y +D++ L + L + ++ V EG
Sbjct: 134 MEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGS 193
Query: 190 GSSGKCLFVKGGQGRARGKGKAVD---SGKKKRSKSKDRKTAECYSCKQIGH-----WK- 240
S + L V+G Q K+ D S + RSKS+ R + C CK+ GH WK
Sbjct: 194 NSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKS-CKYCKRDGHDISKCWKL 252
Query: 241 RDCPNRPGK-----SSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTP 295
+D R GK A VV + S +E + + +D W+LD+ C+YHM P
Sbjct: 253 QDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCP 312
Query: 296 HREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISL 355
+R+WF ++++ G V +GDD PC + G+ V+I + DG +RTLS VR++P + +++ISL
Sbjct: 313 NRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISL 372
Query: 356 GTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVE---TDD 412
TL GY + + IL+V+KG++ VM+A + N+Y L G T++G+VA+V ++
Sbjct: 373 CTLDRKGYKYSGGDG--ILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNS 430
Query: 413 DATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKG 472
DAT +WHMRLGH+SE G+ +L KR LL G + C++C+ GK RV+F T H T+G
Sbjct: 431 DATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEG 490
Query: 473 ILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
ILDYVHSD+WGP ++ S GG RY + ++
Sbjct: 491 ILDYVHSDLWGPARKTSFGGARYMMTIV 518
Score = 113 bits (283), Expect = 4e-23
Identities = 56/94 (59%), Positives = 71/94 (74%)
Query: 1003 NELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFDMSKENPVS 1062
++LK +L EF+MKDLG AKKILGMEI R+R + KL+LSQK Y+E V RF+M PVS
Sbjct: 877 SKLKAQLSSEFEMKDLGVAKKILGMEITRERHSDKLYLSQKGYIEKVFRRFNMHDAKPVS 936
Query: 1063 TPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
TPLA HF+LS C ++D IE MS++PY+SAVG
Sbjct: 937 TPLAAHFRLSSDLCPQSDYNIEYMSRVPYSSAVG 970
Score = 66.2 bits (160), Expect = 7e-09
Identities = 35/55 (63%), Positives = 37/55 (66%), Gaps = 3/55 (5%)
Query: 889 ALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQPEGFSETGDGRLVC---KLKRSL 940
++VA D LEQMDVKT FLHG LEE IYMEQPEGF G LVC KLK L
Sbjct: 829 SIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRDSKLKAQL 883
>ref|NP_916849.1| retrovirus-related pol polyprotein from transposon TNT 1-94-like
[Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 343 bits (881), Expect = 2e-92
Identities = 185/405 (45%), Positives = 250/405 (61%), Gaps = 14/405 (3%)
Query: 2 AKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMKEKAASLIRL 61
+KFE+ +F GTGNF LW R+KDLLAQQ + KAL + P + W EMK +AA+ IRL
Sbjct: 7 SKFEMVKFDGTGNFVLWQMRLKDLLAQQGISKALEETMPEKMDAGKWEEMKAQAAATIRL 66
Query: 62 CVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAF 121
+SD +M ++D TPK++WDKL SLYMSK+L +KL+ KQ+LY L+MQE DL+ HV F
Sbjct: 67 SLSDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVF 126
Query: 122 NNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQR 181
N ++ DL++L V + DEDKAIILL SLP SY+H+VTTLT+GKD+IK + I S+LL R
Sbjct: 127 NQLVVDLSKLDVNLYDEDKAIILLCSLPPSYEHVVTTLTHGKDTIKTEEIISSLLARDLR 186
Query: 182 RQSVEEG-GGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWK 240
R E S + L VK G K+ + G A CY C + GH +
Sbjct: 187 RSKKNEAMEASQAESLLVKAKHDHEAGVSKSNEKG------------ARCYKCHEFGHIR 234
Query: 241 RDCPNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWF 300
R+CP K + +S D S ++L VS+ K +AW+LDS SYH+T REWF
Sbjct: 235 RNCPLLK-KRKDGIASLAARGDDSDSSSHEILTVSNEKSGEAWMLDSASSYHVTSKREWF 293
Query: 301 NSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHE 360
S+K GDFG VYLGDD + G+ VK + DG LS VR+VP + K++ISLG+LHE
Sbjct: 294 FSYKSGDFGVVYLGDDTSYHVVGVDDVKFKMYDGNEVLLSDVRHVPGLRKSLISLGSLHE 353
Query: 361 NGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDV 405
G+ ++ + +R + + K TVM +RT+ +YKL G V G V
Sbjct: 354 TGWLYQVDFDRKTMNIMKDGKTVMTGERTSSCLYKLQGNAVAGGV 398
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 2340
Score = 338 bits (868), Expect = 5e-91
Identities = 194/520 (37%), Positives = 297/520 (56%), Gaps = 28/520 (5%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDW-NEMKE---KAASL 58
K+++ Y F LW +++ +LAQQ L AL D T DW N+ K+ KA S
Sbjct: 212 KYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSG---FDKRTHDWSNDEKKRDRKAMSY 268
Query: 59 IRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHV 118
I L +S++++ +L +W KLE + M+K L +K+ KQ L+ K+Q+ G + H+
Sbjct: 269 IHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHL 328
Query: 119 YAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTL-LQ 177
AF I+ADL + VK D+ED +ILL SLP SY + T+ Y +D++ L + L ++
Sbjct: 329 SAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVK 388
Query: 178 HAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVD---SGKKKRSKSKDRKTAECYSCK 234
++ EG S + L V G Q K ++ D S + RSKS+ R + C CK
Sbjct: 389 EKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKS-CKYCK 447
Query: 235 QIGH-----WK-RDCPNRPGK-----SSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDAW 283
+ GH WK D R GK A VV + S +E + + +D W
Sbjct: 448 RDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQW 507
Query: 284 VLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVR 343
+L++ C YHM P+R+WF +++ G V +GDD PC + G+ V+I + DG +RTLS VR
Sbjct: 508 ILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVR 567
Query: 344 YVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMG 403
++P + +++ISL TL GY + + IL+V+KG++ VM+A + N+Y L G T++G
Sbjct: 568 HIPNLKRSLISLCTLDRKGYKYSGGDG--ILKVTKGSLVVMKADIKSANLYHLRGTTILG 625
Query: 404 DVASVE---TDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCR 460
+VA+V ++ DAT +WHMRLGH++E G+ +L KR LL G + C++C+ GK R
Sbjct: 626 NVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKR 685
Query: 461 VRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
V+F T H T+GILDYVHSD+WGP ++ S GG RY + ++
Sbjct: 686 VKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIV 725
Score = 278 bits (712), Expect = 7e-73
Identities = 145/238 (60%), Positives = 177/238 (73%), Gaps = 1/238 (0%)
Query: 859 LQKGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYM 918
+ KG G+ FSPVV+H+SIR +L++VA D LEQMDVKT FLHG LEE IYM
Sbjct: 1092 IAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 1151
Query: 919 EQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLD 978
EQP+GF G LVC+LK+SLYGLKQSPRQ YKRFDS+ML +RR +YD CVY++ +
Sbjct: 1152 EQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVV- 1210
Query: 979 DGSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKL 1038
DGS I+LLLYVDDMLIAA + +LK +L EF+MKDLGAAKKILGMEI R R + KL
Sbjct: 1211 DGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKL 1270
Query: 1039 WLSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
+LSQK Y+E VL RF+M PVSTPLA HF+LS C ++D +IE MS++PY+SAVG
Sbjct: 1271 YLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVG 1328
>gb|AAK29467.1| polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 337 bits (865), Expect = 1e-90
Identities = 206/561 (36%), Positives = 318/561 (55%), Gaps = 43/561 (7%)
Query: 1 GAKFEVTRFYGTGN-FGLWHRRVKDLLAQQSLQKAL--RDEKPTDIATVDWNEMKEKAAS 57
G K+EV +F G F +W RR+KDLL QQ L KAL + +KP + DW E+ EKAAS
Sbjct: 3 GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62
Query: 58 LIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAH 117
IRL ++DD++N+I+D + +W KLE+LYMSKTL NKL+ K++LY+L M EG + +H
Sbjct: 63 AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122
Query: 118 VYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQ 177
+ N ++ L L VK+++EDK I+LL SLP SYD L TT+ +GKDSI+L ++S LL
Sbjct: 123 LNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLL 182
Query: 178 HAQRRQSVEEGGGSSGKCLFVKGGQGRARGK-----GKAVDSGKKK-RSKSKDRKTAECY 231
+ + R+ E G +F+ +GR+ + G++ GK K RSKSK R CY
Sbjct: 183 NEKMRKKPENHGQ-----VFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKAR---NCY 234
Query: 232 SCKQIGHWKRDCPN-------RPGKSSNSNSSANVVQSDG--SCSEEDLLCVSSVKCTDA 282
+C Q GH+KRDCPN G+ ++ N++A V +D E+ C+
Sbjct: 235 NCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTESE 294
Query: 283 WVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQV 342
WV+D+ SYH TP R+ F + GD+G V +G+ I G+ + + G L V
Sbjct: 295 WVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDV 354
Query: 343 RYVPEVTKNMISLGTLHENGYS--FKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGT 400
R+VP++ N+IS L ++GY F +++ R++KGA+ + + G +Y+
Sbjct: 355 RHVPDLRMNLISGIALDQDGYENYFANQK----WRLTKGALVIAKGV-ARGTLYRTNAEI 409
Query: 401 VMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCR 460
G++ + ++++ +WH R+GH SE+G+ L K++L+ + TI C Y + GKQ R
Sbjct: 410 CQGELNAAH-EENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHR 468
Query: 461 VRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFL-------HLLMIFLVRSGFIF*N 513
V F+T + ILD V+SDV GP + S+GG +YF+ L +++ R+
Sbjct: 469 VSFQTSSERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQ 528
Query: 514 INLK--SLPSSNCGRQRLRIR 532
+ K +L GR+R R+R
Sbjct: 529 VFQKFHALVERETGRKRKRLR 549
Score = 228 bits (582), Expect = 8e-58
Identities = 121/237 (51%), Positives = 157/237 (66%), Gaps = 2/237 (0%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K+G+ FSPVV+ TSIR +L++ AS D+ +EQ+DVKT FLHG+LEE+IYMEQ
Sbjct: 882 KGFEQKKGIDFDEIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAFLHGDLEEEIYMEQ 941
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
EGF +G +VCKL +SLYGLKQ+PRQ YK+FDS+M YR CVY + D
Sbjct: 942 GEGFEVSGKKHMVCKLNKSLYGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDK 1001
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+FI LLLY D MLI + +L+ K FDMKDLG AK+ILGM+I R+ KKL L
Sbjct: 1002 NFIILLLYTDYMLIVGKDKELIAKLRKDFSKSFDMKDLGPAKQILGMKIAREE-QKKLGL 1060
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQC-SKTDSEIEGMSKIPYASAVG 1096
S + Y+E VL RF+M P+STPL ++ KL+ +K E M+K+PY+SAVG
Sbjct: 1061 SHEKYIERVLERFNMKSAKPISTPLVSYLKLTKQMFPTKKKGEKGDMAKVPYSSAVG 1117
>gb|AAP54315.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535452|ref|NP_922028.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22094359|gb|AAM91886.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1280
Score = 333 bits (855), Expect = 2e-89
Identities = 194/508 (38%), Positives = 293/508 (57%), Gaps = 28/508 (5%)
Query: 15 FGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDW-NEMKEK---AASLIRLCVSDDLMNH 70
F LW +++ +LAQQ L AL D T DW N+ K+K A S I L +S++++
Sbjct: 52 FSLWQVKMRAVLAQQDLDDALSG---FDKRTQDWSNDEKKKDRKAMSYIHLHLSNNILQE 108
Query: 71 ILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTR 130
+L T +W KLE + M+K L +K+ KQ+L+ K+Q+ G + H+ F I+ADL
Sbjct: 109 VLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLES 168
Query: 131 LRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSV-EEGG 189
+ VK D+ED +ILL SLP SY + T+ Y D++ L + L + ++ V EG
Sbjct: 169 IEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGS 228
Query: 190 GSSGKCLFVKGGQGRARGKGKAVD---SGKKKRSKSKDRKTAECYSCKQIGH-----WK- 240
S + L V+G Q K ++ D S + RSKS+ R + C CK+ GH WK
Sbjct: 229 NSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKS-CKYCKRDGHDISECWKL 287
Query: 241 RDCPNRPGK-----SSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTP 295
+D R GK A VV + S +E + + +D W+LD+ +YHM P
Sbjct: 288 QDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCP 347
Query: 296 HREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISL 355
+R+WF +++ G V +GDD PC + G+ V+I + DG +RTLS VR++P + +++ISL
Sbjct: 348 NRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISL 407
Query: 356 GTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVE---TDD 412
TL GY + + IL+V+KG++ VM+A + N+Y L G T++G+VA+V ++
Sbjct: 408 CTLDRKGYKYSGGDG--ILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNS 465
Query: 413 DATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKG 472
DAT +WHMRLGH+SE G+ +L KR LL G + C++C+ GK RV+F T H T+G
Sbjct: 466 DATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG 525
Query: 473 ILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
ILDYVHSD+WGP + S GG RY + ++
Sbjct: 526 ILDYVHSDLWGPACKTSFGGARYMMTIV 553
Score = 232 bits (592), Expect = 5e-59
Identities = 121/200 (60%), Positives = 146/200 (72%), Gaps = 1/200 (0%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ FSP+++H+SIR +L +VA D LEQMDVKT FLHG LEE IYMEQ
Sbjct: 922 KGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 981
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G LVC+LK+SLYGLKQSPRQ YKRFDS+ML +RR +YD CVY++ + DG
Sbjct: 982 PEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVV-DG 1040
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S I+LLLYVDDMLIAA + +LK +L EF MKDLGAAKKILGMEI R+R + KL+L
Sbjct: 1041 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYL 1100
Query: 1041 SQKSYVEGVLSRFDMSKENP 1060
SQK Y++ VL RF+M P
Sbjct: 1101 SQKGYIKKVLRRFNMHDVKP 1120
>emb|CAE04890.2| OSJNBa0042I15.12 [Oryza sativa (japonica cultivar-group)]
Length = 432
Score = 330 bits (846), Expect = 2e-88
Identities = 179/406 (44%), Positives = 248/406 (60%), Gaps = 45/406 (11%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMKEKAASLIRLC 62
KF++ +F G GNFGLW RVKDLLAQQ + KAL+ KP + D EM+ +AA+ IR C
Sbjct: 43 KFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVKPAKMEDDDCEEMQLQAAATIRRC 102
Query: 63 VSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFN 122
+SD +M H+++ T+PK +W+KLE+ +MSKTL NK + KQ+LY LKMQEG DL AHV FN
Sbjct: 103 LSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTAHVNVFN 162
Query: 123 NILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRR 182
++ DL ++ V+VDDEDKAI+LL SLP SY+H++
Sbjct: 163 QLVTDLVKMDVEVDDEDKAIVLLCSLPESYEHVM-------------------------- 196
Query: 183 QSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRD 242
+ +EG S + L VK D K K+K +K +C+ C + GH +R+
Sbjct: 197 RKNKEGETSQAEGLLVKE------------DHAGHKVKKNKKKKMVKCFRCDEWGHIRRE 244
Query: 243 CPNRPGKS-SNSNSSANVVQSDGSCSEEDLLCVSSVKCTDA--WVLDSGCSYHMTPHREW 299
CP GK+ +N +S+N SDG DLL +SS + DA W+LDS S+H+TP +EW
Sbjct: 245 CPTLKGKAKANVATSSNDSDSDGC----DLLTMSSAQSKDAEAWILDSASSFHVTPRKEW 300
Query: 300 FNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLH 359
F+S+K G+FG+VYLGDD G+ +VKI L+DG L VR+VP + +N+ISLGTLH
Sbjct: 301 FSSYKSGEFGFVYLGDDTSYPAVGVGEVKIKLEDGGEHVLQGVRHVPGLKRNLISLGTLH 360
Query: 360 ENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDV 405
E G F+ NR + + KG MT+M ++ ++YKL G TV G V
Sbjct: 361 EEGLIFRGNRNRKTIEIMKGKMTMMTGEKVESHLYKLRGCTVAGVV 406
>ref|XP_469192.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa (japonica
cultivar-group)] gi|40538906|gb|AAR87163.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1322
Score = 326 bits (836), Expect = 3e-87
Identities = 188/497 (37%), Positives = 282/497 (55%), Gaps = 13/497 (2%)
Query: 15 FGLWHRRVKDLLAQQS-LQKALRD--EKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHI 71
F LW +++ +LAQ S L +AL +K T T + KA SLI+L +S+D++ +
Sbjct: 17 FSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQEV 76
Query: 72 LDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRL 131
L T ++W KLES+ MSK L +K+ K +L+S K+ E G + H+ F I+ADL +
Sbjct: 77 LQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHISVFKEIVADLVSM 136
Query: 132 RVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGS 191
V+ DDED ++LL SLP SY + T+ +D + L + L + + V+ S
Sbjct: 137 EVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSYASS 196
Query: 192 S-GKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRPGKS 250
S G+ L V+G + + R +SK R C CK+ H+ +C K
Sbjct: 197 SKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKE 256
Query: 251 SN-SNSSANVVQSDGSCSEEDLLCVSS--VKCTDAWVLDSGCSYHMTPHREWFNSFK-LG 306
S+ A+VV S + D L V + V D W+LD+ CS+H+ +R+WF+S+K +
Sbjct: 257 KRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQ 316
Query: 307 DFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFK 366
+ V +GDD P I G+ V+I DG RTL VR++P + +N+ISL TL GY +
Sbjct: 317 NEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYS 376
Query: 367 SEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDV--ASVETDDDA-TKMWHMRLG 423
+++VSKG++ M + N+Y L G T+ G V A+V D+ + T +WHMRLG
Sbjct: 377 GSGG--VVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLG 434
Query: 424 HLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG 483
H+SE GM +L KRNLL G + C++CV GK RV+F T H+TKGILDYVH+D+WG
Sbjct: 435 HMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWG 494
Query: 484 PTKEPSVGGFRYFLHLL 500
P+++PS+GG RY L ++
Sbjct: 495 PSRKPSLGGARYMLTII 511
Score = 281 bits (720), Expect = 8e-74
Identities = 143/236 (60%), Positives = 177/236 (74%), Gaps = 1/236 (0%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ FSPVV+H+SIR ++V D+ LEQ+DVKTTFLHG LEE+IYM+Q
Sbjct: 877 KGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQ 936
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G VCKLKRSLYGLKQSPRQ YKRFDS+ML G++R ++D CVY++ + +G
Sbjct: 937 PEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFV-NG 995
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S I+LLLYVDDMLIAA + LK +L EFDMKDLGAAKKILGMEI RDR + L+L
Sbjct: 996 SPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFL 1055
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+SY++ VL RF+M PVSTP+A HFKLS QC+ TD ++E MS++PY+SAVG
Sbjct: 1056 SQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVG 1111
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1373
Score = 322 bits (826), Expect = 4e-86
Identities = 186/512 (36%), Positives = 278/512 (53%), Gaps = 17/512 (3%)
Query: 3 KFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDWNEMK--EKAASLIR 60
KF++ F LW +++ +LAQ D A E++ +KA +LI+
Sbjct: 2 KFDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRKDQKALALIQ 61
Query: 61 LCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYA 120
L + +D++ L T ++W KLES+ MSK L +K+ K +L++LKM+E + H+
Sbjct: 62 LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121
Query: 121 FNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQ 180
F I+ADL + VK DDED ++LL SLP SY + T+ +D + L + L +
Sbjct: 122 FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKEK 181
Query: 181 RRQSVEEGGGSS--GKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGH 238
+ V+ G SS G+ L V+G K D + +SK K C CK H
Sbjct: 182 MKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKF-CVYCKLKNH 240
Query: 239 WKRDCPNRPGKSSNSNSSANVVQSDGSCSEED-----LLCVSSVKCTDAWVLDSGCSYHM 293
+C K + V + + S++D ++ V D W+LDS CS+H+
Sbjct: 241 NIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHI 300
Query: 294 TPHREWFNSFKLGDFG-YVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNM 352
R WF+S+K G V +GDD PC I G+ V+I DDG RTL VRY+P +++N+
Sbjct: 301 CTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNL 360
Query: 353 ISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGD--VASVET 410
ISL TL GY + + +L+VSKG++ ++ + +Y L G T+ G A+ T
Sbjct: 361 ISLSTLDAEGYKYSGSDG--VLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAIT 418
Query: 411 DDDATK--MWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQH 468
+D+ +K +WHMRLGH+S GM +L KRNLLKG S I C++C+ GK RV+F T H
Sbjct: 419 NDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVH 478
Query: 469 KTKGILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
TKG LDYVH+D+WGP+K+PS+GG RY L ++
Sbjct: 479 TTKGTLDYVHADLWGPSKKPSLGGARYMLTII 510
Score = 272 bits (695), Expect = 6e-71
Identities = 139/222 (62%), Positives = 169/222 (75%), Gaps = 1/222 (0%)
Query: 875 FSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQPEGFSETGDGRLVC 934
FSPVV+H+SIR L++VAS D+ LEQ+DVKT FLHG LEE IYM+QPEGF G + VC
Sbjct: 902 FSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVC 961
Query: 935 KLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDMLI 994
KLKRSLYGLKQSPRQ KRFDS+ML ++R YD CVY++ + +GS I+LLLYVDDMLI
Sbjct: 962 KLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLI 1020
Query: 995 AANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFD 1054
AA + +LK L EFDMKDLG+AKKILGMEI RDR + L+LSQ +Y++ VL RF+
Sbjct: 1021 AAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFN 1080
Query: 1055 MSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
M VSTP+A HFKLS QC D+EIE MS++PY+SAVG
Sbjct: 1081 MQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVG 1122
>ref|XP_470868.1| Putative retroelement pol polyprotein [Oryza sativa]
gi|14029020|gb|AAK52561.1| Putative retroelement pol
polyprotein [Oryza sativa]
Length = 1326
Score = 321 bits (823), Expect = 9e-86
Identities = 184/497 (37%), Positives = 276/497 (55%), Gaps = 13/497 (2%)
Query: 15 FGLWHRRVKDLLAQQS-LQKALRD--EKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHI 71
F LW +++ +LAQ S L +AL +K + T + KA LI+L +S+D++ +
Sbjct: 17 FSLWQVKMRAILAQTSDLDEALESFGKKKSTEWTAEEKRKDRKALLLIQLHLSNDILQEV 76
Query: 72 LDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRL 131
L T ++W KLES+ MSK L +K+ K +L+S K+QE G + H+ F I+ DL +
Sbjct: 77 LQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIVVDLVSI 136
Query: 132 RVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGS 191
V+ DDED ++LL SLP SY + T+ +D + L + L + + V+ S
Sbjct: 137 EVQFDDEDLGLLLLCSLPSSYANFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASS 196
Query: 192 S-GKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNRPGKS 250
S G+ L V+G + + + R +SK R C CK+ H+ +C K
Sbjct: 197 SKGEALQVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNKE 256
Query: 251 SN-SNSSANVVQSDGSCSEEDLLCVSS--VKCTDAWVLDSGCSYHMTPHREWFNSFKLGD 307
S+ A+VV S + D L V + V D W+LD+ CS+H+ +R+WF+S+K
Sbjct: 257 KRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQ 316
Query: 308 FG-YVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFK 366
G V +GDD P I G+ V+I DG RTL VR++P + +N+ISL TL GY +
Sbjct: 317 NGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYS 376
Query: 367 SEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVETDDDA---TKMWHMRLG 423
S +++VSKG++ M + N+Y L G T+ G V + D T +WHMRLG
Sbjct: 377 SSGG--VVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLG 434
Query: 424 HLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG 483
H+SE GM +L KRNLL G + C++CV GK RV+F T H+TKGILDYVH+D+WG
Sbjct: 435 HMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWG 494
Query: 484 PTKEPSVGGFRYFLHLL 500
P+++ +GG RY L ++
Sbjct: 495 PSRKAYLGGARYMLTII 511
Score = 217 bits (553), Expect = 2e-54
Identities = 117/208 (56%), Positives = 141/208 (67%), Gaps = 26/208 (12%)
Query: 889 ALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQPEGFSETGDGRLVCKLKRSLYGLKQSPR 948
++VA D+ LEQ+DVKT FL+G LEE+IYM+QPEGF G VCKLKRSLYGLKQSPR
Sbjct: 841 SIVAMHDLELEQLDVKTAFLYGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPR 900
Query: 949 Q*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDMLIAANHLHNVNELKTK 1008
Q YK GS I+LLLYVDDMLIAA + LK +
Sbjct: 901 QWYK--------------------------SGSPIYLLLYVDDMLIAAKSKEQITTLKKQ 934
Query: 1009 LGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFDMSKENPVSTPLANH 1068
L EFDMKDLGAAKKILGM+I RDR + L+LSQ+SY++ VL RF+M PVSTP+A H
Sbjct: 935 LSSEFDMKDLGAAKKILGMKITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIAPH 994
Query: 1069 FKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
FKLS QC+ TD ++E MS++PY+SAVG
Sbjct: 995 FKLSALQCASTDEDVEYMSRVPYSSAVG 1022
>ref|XP_470528.1| Putative retrovirus-related pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|27436748|gb|AAO13467.1| Putative
retrovirus-related pol polyprotein [Oryza sativa
(japonica cultivar-group)]
Length = 556
Score = 316 bits (810), Expect = 3e-84
Identities = 175/387 (45%), Positives = 243/387 (62%), Gaps = 16/387 (4%)
Query: 21 RVKDLLAQQSLQKALRDEKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDV 80
R+KDLLAQQ + KAL + P + W EMK +A ++IRL +SD +M ++D TPK++
Sbjct: 157 RLKDLLAQQGISKALEETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEKTPKEI 216
Query: 81 WDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDK 140
WDKL SLYMSK+L +KL+ KQ+LY L+MQE DL+ HV FN ++ DL++L VK+DDEDK
Sbjct: 217 WDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDK 276
Query: 141 AIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSVEEG-GGSSGKCLFVK 199
AIILL SLP S++H+VTTLT+GKD++K + I S+LL RR E S + L VK
Sbjct: 277 AIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEAMEASQAESLLVK 336
Query: 200 GGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGHWKRDCP-NRPGKSSNSNSSAN 258
G SKSK+ K A CY C + GH +R+CP + K ++ +A
Sbjct: 337 AKHDHEAGV-----------SKSKE-KGARCYKCHEFGHIRRNCPLLKKRKGGIASLAAR 384
Query: 259 VVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKP 318
SD S E +L VS+ K +AW+LDS SYH+T EWF+S+K GDFG VYLG+D
Sbjct: 385 GDNSDSSSHE--ILTVSNEKSGEAWMLDSASSYHVTSKWEWFSSYKSGDFGVVYLGNDTS 442
Query: 319 CIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSK 378
+ G+ +K + DG LS VR+VP + K++ISLG+LHE G+ ++ + +R + + K
Sbjct: 443 YRVIGVGDIKFKMYDGNEVLLSDVRHVPGLRKSLISLGSLHETGWLYQVDSDRKTMNIMK 502
Query: 379 GAMTVMRAKRTAGNIYKLLGGTVMGDV 405
TVM +RT+ +YKL G V G V
Sbjct: 503 DGKTVMTGERTSSCLYKLQGSAVAGGV 529
>gb|AAP53029.1| putative retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|37532880|ref|NP_920742.1| putative
retrotransposon-related protein [Oryza sativa (japonica
cultivar-group)] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|16905223|gb|AAL31093.1| putative
retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 315 bits (807), Expect = 6e-84
Identities = 189/501 (37%), Positives = 282/501 (55%), Gaps = 21/501 (4%)
Query: 15 FGLWHRRVKDLLAQQS-LQKALRD--EKPTDIATVDWNEMKEKAASLIRLCVSDDLMNHI 71
F LW +++ +LAQ S L +AL +K T T + KA SLI+L +S+D++ +
Sbjct: 14 FSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLIQLHLSNDILQKV 73
Query: 72 LDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRL 131
L T ++W KLES+ MSK L +K+ K +L+S K+QE G + H+ F I+ADL +
Sbjct: 74 LQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHISVFKEIIADLVSM 133
Query: 132 RVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSVEEGGGS 191
V+ DDED ++LL SLP Y + T+ +D + L + L + + V+ S
Sbjct: 134 EVQFDDEDLGLLLLCSLPSLYANFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASS 193
Query: 192 S-GKCLFVKGGQGRARGKGKAVDSGKKK-RSKSKDRKTAECYSCKQIGHWKRDCPNRPGK 249
S GK L V+G + R + D K + R +SK R C CK+ H+ +C K
Sbjct: 194 SKGKALQVRG-RSEQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWKLQNK 252
Query: 250 SSN-SNSSANVVQSDGSCSEEDLL-----CVSSVKCTDAWVLDSGCSYHMTPHREWFNSF 303
S+ A+VV S + D L CV+S D W+LD+ C + + +R+WF+S
Sbjct: 253 EKRKSDGKASVVTSAENSDSADCLVFFAGCVAS---HDEWILDTACLFLICINRDWFSSH 309
Query: 304 KLGDFG-YVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENG 362
K G V +GD+ P I G+ V+I DG RTL VR++P + +N+ISL TL G
Sbjct: 310 KSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEG 369
Query: 363 YSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDV--ASVETDDDA-TKMWH 419
Y + +++VSKG++ M + N+Y L G T+ G + A+V D+ + T +WH
Sbjct: 370 YKYSGSGG--VVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSLTAAAVSKDEPSKTNLWH 427
Query: 420 MRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHS 479
MRLGH+SE GM +L KRNLL G + C++CV GK RV+F T H+TKGILDYVH+
Sbjct: 428 MRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHA 487
Query: 480 DVWGPTKEPSVGGFRYFLHLL 500
D+WGP+++PS+GG Y L ++
Sbjct: 488 DLWGPSRKPSLGGACYMLTII 508
Score = 270 bits (689), Expect = 3e-70
Identities = 138/236 (58%), Positives = 173/236 (72%), Gaps = 1/236 (0%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ FSPVV+H+SIR +VA D+ LEQ+DVKT FLHG LEE+IYM+Q
Sbjct: 823 KGFSQIAGVDYNDVFSPVVKHSSIRTFFCIVAMHDLELEQLDVKTIFLHGELEEEIYMDQ 882
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G VCKLKRSLYGLKQSPRQ YKRFDS+ML G++R ++D CVY++ + +G
Sbjct: 883 PEGFIVPGKEDDVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFV-NG 941
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S I+LLLYVDDMLIAA + LK +L EFDMKDL A+KKILGMEI RD + L+L
Sbjct: 942 SHIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLVASKKILGMEITRDINSGLLFL 1001
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+SY++ VL RF++ PVSTP+A HFKLS QC+ TD ++E MS++PY+S VG
Sbjct: 1002 SQQSYIKKVLQRFNIHDAKPVSTPIAPHFKLSALQCTSTDEDVEYMSRVPYSSVVG 1057
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 312 bits (800), Expect = 4e-83
Identities = 174/507 (34%), Positives = 293/507 (57%), Gaps = 20/507 (3%)
Query: 2 AKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPTDIAT-VDWNEMKEKAASLIR 60
AKFE+ +F G NF LW +VK +L + + A+ E+P D W+EM E A + +
Sbjct: 3 AKFEIEKFNGK-NFSLWKLKVKAILRKDNCLAAI-SERPVDFTDDKKWSEMNEDAMADLY 60
Query: 61 LCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYA 120
L ++D +++ I + T ++WD L LY +K+L NK+F K++LY+L+M E + H+
Sbjct: 61 LSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNT 120
Query: 121 FNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYG--KDSIKLDSISSTLLQH 178
N + + LT L K++ +++A +LL+SLP SYD L+ LT D + D +++ +L+
Sbjct: 121 LNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEE 180
Query: 179 AQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKDRKTAECYSCKQIGH 238
RR++ E+ + + + +GR+ +G++ G+ K SK K CY+C + GH
Sbjct: 181 ESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSSK----KNLTCYNCGKKGH 236
Query: 239 WKRDCPNRPGKSSNSNSSANVVQS--DGS--CSEEDLLCVSSVKCTDAWVLDSGCSYHMT 294
K+DC N + NSN NV + DGS C E + + D W++DSG +YHMT
Sbjct: 237 LKKDCWN---LAQNSNPQGNVASTSDDGSALCCEASIAREGRKRFADIWLIDSGATYHMT 293
Query: 295 PHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMIS 354
+EWF+ ++ G VY DD I G+ +K+ + DG V+T+ VR+V + KN++S
Sbjct: 294 SRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLS 353
Query: 355 LGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVET-DDD 413
G L + + + E + ++++ +GA+ VM+ ++ A N+Y L G T+ ASV D
Sbjct: 354 YGILDNS--ATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAACSPD 411
Query: 414 ATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGI 473
+T +WH +LGH+S++GM L ++ L+ G+ ++ LC++C+ KQ R++F T + K +
Sbjct: 412 STLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVV 471
Query: 474 LDYVHSDVWGPTKEPSVGGFRYFLHLL 500
L+ VHSDVW PS+GG +YF+ +
Sbjct: 472 LELVHSDVW-QAPVPSLGGAKYFVSFI 497
Score = 257 bits (657), Expect = 2e-66
Identities = 125/236 (52%), Positives = 169/236 (70%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K G+ FSPVVR T++R VLA+ A+ ++HLEQ+DVKT FLHG+LEE+IYM Q
Sbjct: 851 KGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYMLQ 910
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF + + LVC+L +SLYGLKQ+PR YKRFDS+++ +GY R + D C Y +
Sbjct: 911 PEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKD 970
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
+F+ LLLYVDDML+A + +++ELK +L +EF+MKDLG A KILGM+IHRDRG +K+WL
Sbjct: 971 NFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWL 1030
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQK+Y++ +LSRF M +STPL + K+S + MS++PYASAVG
Sbjct: 1031 SQKNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVG 1086
>ref|XP_475663.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475188|gb|AAT44257.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1211
Score = 309 bits (791), Expect = 5e-82
Identities = 183/492 (37%), Positives = 277/492 (56%), Gaps = 30/492 (6%)
Query: 15 FGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDW-NEMKE---KAASLIRLCVSDDLMNH 70
F LW +++ +LAQQ L AL D T DW N+ K+ K S I L +S++++
Sbjct: 17 FSLWQVKMRAVLAQQDLDDALSG---FDKRTQDWSNDEKKRDRKTMSYIHLHLSNNILQE 73
Query: 71 ILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTR 130
+L T +W KLE + M+K L +K+ KQ+L+ K+Q+ G + H+ AF I+ADL
Sbjct: 74 VLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKKIVADLES 133
Query: 131 LRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQ---RRQSVEE 187
+ VK D+ED +ILL SLP SY + T+ Y D++ L + L HA+ ++ E
Sbjct: 134 MEVKYDEEDLCLILLCSLPSSYANFRDTILYSCDTLTLKEVYDAL--HAKEKIKKMVPSE 191
Query: 188 GGGSSGKCLFVKGGQGRARGKGKAVD-SGKKKRSKSKDR-KTAECYSCKQIGH-----WK 240
G S + L V+G Q K+ D S R +SK R + C K+ GH WK
Sbjct: 192 GSNSQAEGLVVRGRQQEKNTNSKSRDKSSSSYRGRSKSRGRYKSCKYYKRDGHDISECWK 251
Query: 241 -RDCPNRPGK-----SSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMT 294
+D R GK A VV + S +E + + +D W+LD+ C+YHM
Sbjct: 252 LQDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMC 311
Query: 295 PHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMIS 354
+R+WF +++ G V +GDD PC + G+ V+I + DG +RTLS VR++P + +++IS
Sbjct: 312 LNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLSDVRHIPNLKRSLIS 371
Query: 355 LGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVET---D 411
L TL Y + + IL+V+KG++ VM+A + N+Y + G T++G++A+V +
Sbjct: 372 LCTLDRKVYKYSGGDG--ILKVTKGSLVVMKADIKSANLYHVRGTTILGNIAAVSDSLYN 429
Query: 412 DDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTK 471
DAT +WHMRLGH+SE G+ +L KR LL G + C++C+ GK RV+F T H T+
Sbjct: 430 SDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTE 489
Query: 472 GILDYVHSDVWG 483
ILDYVHSD+WG
Sbjct: 490 SILDYVHSDLWG 501
Score = 273 bits (697), Expect = 4e-71
Identities = 146/256 (57%), Positives = 181/256 (70%), Gaps = 7/256 (2%)
Query: 847 RKKKGKSS------RLA*LQKGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQ 900
++KKG S + + KG G+ FSPV++H+SIR +L++VA D LEQ
Sbjct: 746 KRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQ 805
Query: 901 MDVKTTFLHGNLEEQIYMEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLR 960
MDVKT FLHG LEE IYMEQPEGF G LV +LK+SLYGLKQSPRQ YKRFDS+M
Sbjct: 806 MDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFS 865
Query: 961 IGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGA 1020
+RR +YD CVY++ + DGS I+LLLYVDDMLIAA + +LK +L EF+MKDLGA
Sbjct: 866 QKFRRSNYDSCVYLKVV-DGSSIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGA 924
Query: 1021 AKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTD 1080
AKKILGMEI R+R + KL+LSQK Y+E VL RF+M PVSTPLA HF+LS C ++D
Sbjct: 925 AKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSD 984
Query: 1081 SEIEGMSKIPYASAVG 1096
+IE MS++PY S VG
Sbjct: 985 YDIEYMSRVPYLSVVG 1000
>gb|AAT85194.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1241
Score = 300 bits (767), Expect = 3e-79
Identities = 163/430 (37%), Positives = 249/430 (57%), Gaps = 21/430 (4%)
Query: 89 MSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSL 148
M+K L +K+ KQ+L+ K+Q+ G + H+ AF I+ADL + VK D+ED +ILL SL
Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60
Query: 149 PGSYDHLVTTLTYGKDSIKLDSISSTLLQHAQRRQSV-EEGGGSSGKCLFVKGGQGRARG 207
P SY + T+ Y +D++ L + L + ++ V EG S + L V+G Q
Sbjct: 61 PSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNT 120
Query: 208 KGKAVDSGK---KKRSKSKDRKTAECYSCKQIGH-----WKRDCPNR------PGKSSNS 253
K+ D + RSKS+ R + C CK+ GH WK ++ P
Sbjct: 121 NNKSRDKSSSIYRGRSKSRGRYKS-CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEE 179
Query: 254 NSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYL 313
A VV + S +E + + +D W+LD+ C+YHM P+R+WF +++ G V +
Sbjct: 180 EGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLM 239
Query: 314 GDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDI 373
GDD PC + G+ V+I + DG +RTL VR++P + +++ISL TL GY + + I
Sbjct: 240 GDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDG--I 297
Query: 374 LRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVE---TDDDATKMWHMRLGHLSERGM 430
L+V+KG++ VM+A N+Y L G T++G+VA+V ++ DAT +WHMRLGH+SE G+
Sbjct: 298 LKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 357
Query: 431 MQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEPSV 490
+L KR LL G + C++C+ GK RV+F T H T+GILDYVHSD+WGP ++ S
Sbjct: 358 AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 417
Query: 491 GGFRYFLHLL 500
GG RY + ++
Sbjct: 418 GGARYMMTIV 427
Score = 268 bits (684), Expect = 1e-69
Identities = 142/235 (60%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ FSPVV+H+SIR +L++VA D LEQMDVKT FLHG LEE IYMEQ
Sbjct: 796 KGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 855
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G LVC+LK+SLYGLKQSPRQ YKRFDS+ML +RR +YD CVY++ + DG
Sbjct: 856 PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVV-DG 914
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S I+LLLYVDDMLIAA + +LK +L EF+MKDLGAAKKILGMEI R+R + KL+L
Sbjct: 915 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYL 974
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAV 1095
SQK Y+E VL RF+M VST LA HF+LS C ++ +IE MS++PY+SAV
Sbjct: 975 SQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAV 1029
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
gi|11278366|pir||T47492 copia-like polyprotein -
Arabidopsis thaliana
Length = 1363
Score = 292 bits (748), Expect = 4e-77
Identities = 181/536 (33%), Positives = 279/536 (51%), Gaps = 43/536 (8%)
Query: 1 GAKFEVTRFYGTGNFGLWHRRVK---DLLA--------------QQSLQKALRDEKPTDI 43
GA+ EV +F G G++ +W ++ D+L ++ +K+ DEK
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62
Query: 44 ATVDWNEMKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRL 103
+ E K KA S I L VSD ++ I T+ + + L+ LYMSK L N+++ KQ+L
Sbjct: 63 KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122
Query: 104 YSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY-- 161
YS KM E ++ ++ F +I+ADL L V V DED+AI+LL SLP +D L TL Y
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182
Query: 162 GKDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSK 221
GK + LD +++ + SV++ + L+VK + RG+ + D GK KRSK
Sbjct: 183 GKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVK-DKAENRGRSEQKDKGKGKRSK 241
Query: 222 SKDRKTAECYSCKQIGHWKRDCPNR----------------PGKSSNSNSSANVVQSDGS 265
SK ++ C+ C + GH K CPN+ GK + S N V+S G
Sbjct: 242 SKSKR--GCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVESAGM 299
Query: 266 CSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMR 325
E L + + D W++D+GC YHMT REW F G V +G+ +KG+
Sbjct: 300 FVSE-ALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGVG 358
Query: 326 QVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMR 385
V+I D+G TL VRY+P++ +N++SLGT + G+ F+SE +LR+ G ++
Sbjct: 359 TVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENG--MLRIKSGNQVLLE 416
Query: 386 AKRTAGNIYKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSC 445
+R +Y L G + +V +D T +WH RL H+S++ M L K+ L +
Sbjct: 417 GRR-YDTLYILHGKPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVS 475
Query: 446 TIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFLHLL 500
+ C+ C+ G+ ++ F QH TK L+YVHSD+WG PT S+G +YF+ +
Sbjct: 476 MLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFI 531
Score = 235 bits (600), Expect = 6e-60
Identities = 118/236 (50%), Positives = 158/236 (66%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG + G+ F+PVV+H SIR +L++VA ++ LEQ+DVKT FLHG L+E+IYM
Sbjct: 915 KGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVKTAFLHGELKEKIYMMP 974
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG VC L +SLYGLKQ+PRQ ++F+ YM IG++R DYD C Y + L D
Sbjct: 975 PEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMTEIGFKRSDYDSCAYTKKLSDD 1034
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S ++LL YVDDML+AAN++ ++ LK +L +F+MKDLGAAKKILG+EI DR LWL
Sbjct: 1035 STMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDREAGVLWL 1094
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+SY+ VL F+M + P TPL H K+ K +E E M+ +PY+SAVG
Sbjct: 1095 SQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVG 1150
>ref|XP_475489.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475213|gb|AAT44282.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1243
Score = 289 bits (740), Expect = 4e-76
Identities = 174/497 (35%), Positives = 275/497 (55%), Gaps = 34/497 (6%)
Query: 15 FGLWHRRVKDLLAQQSLQKALRDEKPTDIATVDW-NEMKE---KAASLIRLCVSDDLMNH 70
F LW +++ +LAQQ L AL D T DW N+ K+ KA S I L +S++++
Sbjct: 17 FSLWQVKMRAVLAQQDLDDALSG---FDKRTQDWSNDEKKRDRKAISYIHLHLSNNILQE 73
Query: 71 ILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADLTR 130
+L T +W KLE + M+K L +K+ KQ+L+ K+Q+ + H+ AF I+ADL
Sbjct: 74 VLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLSAFKEIVADLES 133
Query: 131 LRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDSISSTL-LQHAQRRQSVEEGG 189
+ VK D++D +ILL SLP SY + T+ Y +D++ L + + ++ EG
Sbjct: 134 MEVKYDEDDLGLILLCSLPSSYANFRGTILYSRDTLTLKEVYDAFHAKEKMKKMVTSEGS 193
Query: 190 GSSGKCLFVKGGQGRARGKGKAVD---SGKKKRSKSKDRKTAECYSCKQIGHWKRDCPNR 246
S + L V+G Q + K ++ D S + R+KS+ R + C CK+ GH +C
Sbjct: 194 NSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKS-CKYCKRDGHDISEC--- 249
Query: 247 PGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLG 306
K + + G EE V + + +DA +L + T ++WF +++
Sbjct: 250 -WKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQDWFATYEAL 308
Query: 307 DFGYVYLGDDKPCIIKGMRQVKIALDDGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFK 366
G V +GDD PC + G+ V+I + DG +RTLS V+++P + +++ISL
Sbjct: 309 QGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLISL----------- 357
Query: 367 SEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTVMGDVASVE---TDDDATKMWHMRLG 423
IL+V+KG++ VM+ + N+Y L G T++G+VA+V ++ DAT +WHMRLG
Sbjct: 358 ----YGILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSDATNLWHMRLG 413
Query: 424 HLSERGMMQLHKRNLLKGVRSCTIGLCKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWG 483
H+SE G+ +L KR LL G + C++C+ GK RV+F T H T+GILDYVHSD+WG
Sbjct: 414 HMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWG 473
Query: 484 PTKEPSVGGFRYFLHLL 500
P + S GG RY + ++
Sbjct: 474 PAHKTSFGGARYMMTIV 490
Score = 276 bits (705), Expect = 4e-72
Identities = 144/236 (61%), Positives = 174/236 (73%), Gaps = 1/236 (0%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG G+ FSPVV+H+SIR +L +VA D LEQM+VKT FLHG LEE IYMEQ
Sbjct: 859 KGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQ 918
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEGF G LVC+LK+SLYGLKQSPRQ YKRFDS+ML +R +YD CVY++ + DG
Sbjct: 919 PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVV-DG 977
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S I+LLLYVDDMLIAA + +LK +L EF+MKDLGAAKKILGMEI R+R + KL+L
Sbjct: 978 SVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYL 1037
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQK Y+E VL RF+M PVSTPLA HF+LS C +D +IE MS++PY+SAVG
Sbjct: 1038 SQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVG 1093
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25412027|pir||G84599 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 838
Score = 280 bits (717), Expect = 2e-73
Identities = 177/525 (33%), Positives = 282/525 (53%), Gaps = 46/525 (8%)
Query: 5 EVTRFYGTGNFGLW------HRRVKDLLAQQSLQKALRDEKPTD------IATVD--WNE 50
EV + G G++ LW H + LL +A+ +E+ T T D E
Sbjct: 7 EVEKLDGEGDYVLWKEKLLAHIELLGLLEGLEEDEAIEEEESTAETDSLLTKTEDKVLKE 66
Query: 51 MKEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLYSLKMQE 110
+ KA S + L + + ++ ++ T + L+ L+M+K+L N+++ KQRLY KM +
Sbjct: 67 KRGKARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSD 126
Query: 111 GGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTYGKDSIKLDS 170
++ +V F +++DL ++V V DED+AI+LL SLP +D L TL YGK ++ LD
Sbjct: 127 SMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLALDE 186
Query: 171 ISSTLLQHAQRRQSVEEGGGS------SGKCLFVKGGQGRARGKGKAVDSGKKKRSKSKD 224
I+ + R V E G S S LFV+ +GR+ + K+ + K +S+SK
Sbjct: 187 ITGAI------RSKVLELGASGKMLKNSSDALFVQ-DRGRSEKRDKSSER-NKSQSRSKS 238
Query: 225 RKTAECYSCKQIGHWKRDC-----PNRPGKSSNSNSSANVVQSDGSCSEEDLLCVSSVKC 279
R+ C+ C + GH+K+ C N+ G +S S+NV+ G ++ L V
Sbjct: 239 REKKVCWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVI---GQAADAAALAVREESN 295
Query: 280 TD------AWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDD 333
D W++D+GCS+HMTP R+WF F G V + + IKG+ ++I DD
Sbjct: 296 ADNQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDD 355
Query: 334 GRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNI 393
L VRYVP ++KN+IS+GTL + G F+S+ L+V KG MT+++ K+ G +
Sbjct: 356 NTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAG--TLKVVKGCMTLLKGKK-VGTL 412
Query: 394 YKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYC 453
Y L G V G+ +V + D +K+WH RL H+S+R + L K+ L+ + + C+ C
Sbjct: 413 YLLQGVVVTGNANAVTSSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDC 472
Query: 454 VLGKQCRVRFKTGQHKTKGILDYVHSDVWG-PTKEPSVGGFRYFL 497
V GK RV F + +H T+ L+Y+HSD+WG P+ S+G +YF+
Sbjct: 473 VYGKTHRVGFGSAKHVTREKLEYIHSDLWGAPSVPNSLGNCQYFI 517
Score = 95.5 bits (236), Expect = 1e-17
Identities = 51/117 (43%), Positives = 72/117 (60%), Gaps = 2/117 (1%)
Query: 980 GSFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLW 1039
G+ + + ++DD+ + V ELK +L EF+MKDLG A+KILGMEI R+R L
Sbjct: 511 GNCQYFITFIDDL--TRKNKETVKELKERLSSEFEMKDLGPARKILGMEITRNREENILE 568
Query: 1040 LSQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
LSQ+SY++ VL F M + PV TPLA H K ++ + + + M IPYA+AVG
Sbjct: 569 LSQRSYLQKVLKTFRMDECKPVKTPLAPHMKFVAATETEAEEQADQMKSIPYANAVG 625
>ref|XP_476137.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|46576026|gb|AAT01387.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1175
Score = 280 bits (715), Expect = 3e-73
Identities = 161/411 (39%), Positives = 236/411 (57%), Gaps = 18/411 (4%)
Query: 102 RLYSLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY 161
+L+S K+QE G + H+ F I+ADL + V+ DDED ++LL SLP SY + T+
Sbjct: 2 KLFSHKLQESGSILNHISVFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRDTILL 61
Query: 162 GKDSIKLDSISSTLLQHAQRRQSVEEGGGSS-GKCLFVKGGQGRARGKGKAVDSGKKK-R 219
+ + L + L + + V+ SS G+ L V+G + R + D K + R
Sbjct: 62 SRSELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRG-RSEQRTYNDSNDRDKNQSR 120
Query: 220 SKSKDRKTAECYSCKQIGHWKRDCPNRPGKSSN-SNSSANVVQS-----DGSCSEEDLLC 273
+SK R C CK+ H+ +C K S+ A+VV S G C ++C
Sbjct: 121 GRSKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSADNSDSGDCLVVFVVC 180
Query: 274 VSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFG-YVYLGDDKPCIIKGMRQVKIALD 332
VSS D W+LD+ CS+H+ +R+WF+S+K G V +GDD P I G+ V+I
Sbjct: 181 VSS---HDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTH 237
Query: 333 DGRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGN 392
DG RTL VR++P + +N+ISL TL GY + +++VSKG++ M + N
Sbjct: 238 DGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGG--VVKVSKGSLVYMIGDMNSAN 295
Query: 393 IYKLLGGTVMGDV-ASVETDDDATK--MWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGL 449
+Y L G T+ G V A+V + D+ +K MWHMRLGH+SE GM +L KRNLL G +
Sbjct: 296 LYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKF 355
Query: 450 CKYCVLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEPSVGGFRYFLHLL 500
C++CV GK RV+F T H+TKGILDYVH+D+WGP+++PS+GG RY L ++
Sbjct: 356 CEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTII 406
Score = 260 bits (664), Expect = 2e-67
Identities = 132/218 (60%), Positives = 165/218 (75%), Gaps = 1/218 (0%)
Query: 879 VRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQPEGFSETGDGRLVCKLKR 938
V+H+SIR ++VA D+ LEQ+DVKT FLHG LEE+IYM+QPEGF G VCKLKR
Sbjct: 748 VKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKR 807
Query: 939 SLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDGSFIFLLLYVDDMLIAANH 998
SLYGLKQSPRQ YKRFDS+ML G++R ++D CVY++ + + S I+LLLYVDDMLIAA
Sbjct: 808 SLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFV-NVSPIYLLLYVDDMLIAAKS 866
Query: 999 LHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWLSQKSYVEGVLSRFDMSKE 1058
+ LK +L EFDMKDL AAKKILGMEI RDR + L+LSQ+SY++ VL RF+M
Sbjct: 867 KEQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQRFNMHDT 926
Query: 1059 NPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
PVST +A HFKLS QC+ TD ++E MS++PY+S VG
Sbjct: 927 KPVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVG 964
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25301696|pir||F84486 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1356
Score = 279 bits (714), Expect = 4e-73
Identities = 169/528 (32%), Positives = 275/528 (52%), Gaps = 36/528 (6%)
Query: 2 AKFEVTRFYGTGNFGLWHRRVKDLLAQQSLQKALRDEKPT-------DIATVDWNEM--- 51
A+ EV +F G G++ +W ++ + L AL++ + T D + D+ E
Sbjct: 4 ARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK 63
Query: 52 -------KEKAASLIRLCVSDDLMNHILDLTTPKDVWDKLESLYMSKTLMNKLFAKQRLY 104
K+KA S I L V+D ++ I +T + L+ LYMSK L N+++ KQ+LY
Sbjct: 64 FEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLY 123
Query: 105 SLKMQEGGDLQAHVYAFNNILADLTRLRVKVDDEDKAIILLRSLPGSYDHLVTTLTY--G 162
S KM E ++ ++ F I+ DL + V + DED+AI+LL +LP ++D L TL Y G
Sbjct: 124 SFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSG 183
Query: 163 KDSIKLDSISSTLLQHAQRRQSVEEGGGSSGKCLFVKGGQGRARGKGKAVDSGKKKRSKS 222
K + LD +++ + SV++ + L+VK + KGK GK K K
Sbjct: 184 KSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKD---KNENKGKGEQKGKGKGKKG 240
Query: 223 KDRKTAECYSCKQIGHWKRDCPNRPG---------KSSNSNSSANVVQSDGSCSEEDLLC 273
K +K C++C + GH++ CPN+ K +S N+ ++ G E L
Sbjct: 241 KSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSE-ALS 299
Query: 274 VSSVKCTDAWVLDSGCSYHMTPHREWFNSFKLGDFGYVYLGDDKPCIIKGMRQVKIALDD 333
+ V D W+LD+GCSYHMT REWF+ F G V +G+ ++G+ +++ D
Sbjct: 300 STEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSD 359
Query: 334 GRVRTLSQVRYVPEVTKNMISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNI 393
G L+ VRY+P++ +N++SLGT + GY F+SE+ ILR+ G ++ +R +
Sbjct: 360 GLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDG--ILRIKAGNQVLLTGRR-YDTL 416
Query: 394 YKLLGGTVMGDVASVETDDDATKMWHMRLGHLSERGMMQLHKRNLLKGVRSCTIGLCKYC 453
Y L V + +V D T +WH RL H+S++ M L ++ L + ++ +C+ C
Sbjct: 417 YLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476
Query: 454 VLGKQCRVRFKTGQHKTKGILDYVHSDVWGPTKEP-SVGGFRYFLHLL 500
+ GK R F H TK L+Y+HSD+WG P S+G +YF+ ++
Sbjct: 477 IYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSII 524
Score = 229 bits (585), Expect = 4e-58
Identities = 112/236 (47%), Positives = 154/236 (64%)
Query: 861 KGIHSKRGLIMMRFFSPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHGNLEEQIYMEQ 920
KG K G+ F+PVV+H SIR +L++VA D+ LEQ+DVKT FLHG L+E+IYM
Sbjct: 908 KGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELKEKIYMSP 967
Query: 921 PEGFSETGDGRLVCKLKRSLYGLKQSPRQ*YKRFDSYMLRIGYRRCDYDCCVYVRSLDDG 980
PEG+ VC L ++LYGLKQ+P+Q ++FD++M I + + YD C Y + L DG
Sbjct: 968 PEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTKVLPDG 1027
Query: 981 SFIFLLLYVDDMLIAANHLHNVNELKTKLGKEFDMKDLGAAKKILGMEIHRDRGTKKLWL 1040
S ++LL+YVDD+L+A+ + + LK LG F+MKDLGAAKKILGMEI RDR LWL
Sbjct: 1028 SVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGVLWL 1087
Query: 1041 SQKSYVEGVLSRFDMSKENPVSTPLANHFKLSLGQCSKTDSEIEGMSKIPYASAVG 1096
SQ+ Y+ +L ++M++ P TPL HFK K + + M +PY+SAVG
Sbjct: 1088 SQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVPYSSAVG 1143
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.337 0.146 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,020,233,684
Number of Sequences: 2540612
Number of extensions: 80172981
Number of successful extensions: 278468
Number of sequences better than 10.0: 1912
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 271863
Number of HSP's gapped (non-prelim): 3622
length of query: 1309
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1169
effective length of database: 507,674,714
effective search space: 593471740666
effective search space used: 593471740666
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 81 (35.8 bits)
Lotus: description of TM0065.12