BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0062.3
(108 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN18197.1| At3g05090/T12H1_5 [Arabidopsis thaliana] gi|23296... 183 8e-46
gb|AAF27015.1| hypothetical protein [Arabidopsis thaliana] 151 4e-36
ref|XP_534226.1| PREDICTED: similar to WD repeat endosomal prote... 142 2e-33
emb|CAH65280.1| hypothetical protein [Gallus gallus] 142 2e-33
dbj|BAE02523.1| unnamed protein product [Macaca fascicularis] 142 2e-33
gb|AAL78650.1| WD repeat endosomal protein [Homo sapiens] gi|188... 142 2e-33
emb|CAH91092.1| hypothetical protein [Pongo pygmaeus] 142 2e-33
emb|CAH56300.1| hypothetical protein [Homo sapiens] 142 2e-33
dbj|BAA95973.2| KIAA1449 protein [Homo sapiens] 142 2e-33
gb|AAH37168.1| WDR48 protein [Homo sapiens] 142 2e-33
ref|XP_343504.2| PREDICTED: similar to RIKEN cDNA 8430408H12 [Ra... 142 3e-33
ref|NP_080512.1| WD repeat domain 48 [Mus musculus] gi|38571774|... 142 3e-33
gb|AAH48155.1| Wdr48 protein [Mus musculus] 142 3e-33
gb|AAH06679.1| Wdr48 protein [Mus musculus] 142 3e-33
dbj|BAC31719.1| unnamed protein product [Mus musculus] 142 3e-33
dbj|BAC29218.1| unnamed protein product [Mus musculus] 142 3e-33
dbj|BAB31193.2| unnamed protein product [Mus musculus] 142 3e-33
dbj|BAB28345.1| unnamed protein product [Mus musculus] 142 3e-33
gb|AAH68705.1| LOC414700 protein [Xenopus laevis] 141 3e-33
emb|CAF97674.1| unnamed protein product [Tetraodon nigroviridis] 141 3e-33
>gb|AAN18197.1| At3g05090/T12H1_5 [Arabidopsis thaliana] gi|23296966|gb|AAN13212.1|
unknown protein [Arabidopsis thaliana]
gi|15810507|gb|AAL07141.1| unknown protein [Arabidopsis
thaliana] gi|22022579|gb|AAM83246.1| AT3g05090/T12H1_5
[Arabidopsis thaliana] gi|18397118|ref|NP_566246.1|
transducin family protein / WD-40 repeat family protein
[Arabidopsis thaliana] gi|30679384|ref|NP_850516.1|
transducin family protein / WD-40 repeat family protein
[Arabidopsis thaliana]
Length = 753
Score = 183 bits (465), Expect = 8e-46
Identities = 84/98 (85%), Positives = 93/98 (94%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT+LVSGGTEKV+RVWDPR+GSK+MKL+GHTDN+R LLLDSTGRFCLSGSSDSMIR
Sbjct: 221 MNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIR 280
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
LWDLGQQRCLH+YAVHTDSVWALA +FSHVYSGGRD
Sbjct: 281 LWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRD 318
>gb|AAF27015.1| hypothetical protein [Arabidopsis thaliana]
Length = 743
Score = 151 bits (381), Expect = 4e-36
Identities = 72/98 (73%), Positives = 81/98 (82%), Gaps = 12/98 (12%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT+LVSGGTEKV+RVWDPR+GSK+MKL+GHTDN+R LLLDSTG R
Sbjct: 223 MNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTG------------R 270
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
LWDLGQQRCLH+YAVHTDSVWALA +FSHVYSGGRD
Sbjct: 271 LWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRD 308
>ref|XP_534226.1| PREDICTED: similar to WD repeat endosomal protein [Canis
familiaris]
Length = 661
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 160 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 219
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 220 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 266
Score = 31.6 bits (70), Expect = 4.9
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 18/100 (18%)
Query: 8 LVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQ 67
L + G + ++R+W + H D ++AL S D I LWD+
Sbjct: 83 LFTAGRDSIIRIWS---------VNQHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTL 133
Query: 68 RCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 134 TALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 173
>emb|CAH65280.1| hypothetical protein [Gallus gallus]
Length = 678
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 176 MNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLR 282
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTE 189
>dbj|BAE02523.1| unnamed protein product [Macaca fascicularis]
Length = 622
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>gb|AAL78650.1| WD repeat endosomal protein [Homo sapiens]
gi|18874090|ref|NP_065890.1| WD repeat domain 48 [Homo
sapiens] gi|20072251|gb|AAH26353.1| WD repeat domain 48
[Homo sapiens]
Length = 677
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>emb|CAH91092.1| hypothetical protein [Pongo pygmaeus]
Length = 677
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>emb|CAH56300.1| hypothetical protein [Homo sapiens]
Length = 607
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 106 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 165
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 166 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 212
Score = 41.6 bits (96), Expect = 0.005
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 31 LKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHSYAVHTDSVWALASTSTFS 90
++ HTD + ++L G+ +S SSD+ +++W+ + C+ + H D V ALA
Sbjct: 1 MEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKE 60
Query: 91 HVYSGGRD 98
V S G D
Sbjct: 61 LVASAGLD 68
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 17 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 76
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 77 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 119
>dbj|BAA95973.2| KIAA1449 protein [Homo sapiens]
Length = 680
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 179 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 238
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 239 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 285
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 48 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 107
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 108 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 141
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 90 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 149
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 150 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 192
>gb|AAH37168.1| WDR48 protein [Homo sapiens]
Length = 502
Score = 142 bits (359), Expect = 2e-33
Identities = 66/107 (61%), Positives = 81/107 (75%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 1 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 60
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 61 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 107
>ref|XP_343504.2| PREDICTED: similar to RIKEN cDNA 8430408H12 [Rattus norvegicus]
Length = 714
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 214 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 273
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 274 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 320
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 83 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 142
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 143 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 176
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 125 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 184
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 185 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 227
>ref|NP_080512.1| WD repeat domain 48 [Mus musculus] gi|38571774|gb|AAH62967.1| WD
repeat domain 48 [Mus musculus]
gi|26330560|dbj|BAC29010.1| unnamed protein product [Mus
musculus] gi|26329323|dbj|BAC28400.1| unnamed protein
product [Mus musculus] gi|26326023|dbj|BAC26755.1|
unnamed protein product [Mus musculus]
Length = 676
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>gb|AAH48155.1| Wdr48 protein [Mus musculus]
Length = 662
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>gb|AAH06679.1| Wdr48 protein [Mus musculus]
Length = 635
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 135 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 194
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 195 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 241
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 4 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 63
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 64 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 97
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 46 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 105
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 106 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 148
>dbj|BAC31719.1| unnamed protein product [Mus musculus]
Length = 676
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>dbj|BAC29218.1| unnamed protein product [Mus musculus]
Length = 576
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 49.7 bits (117), Expect = 2e-05
Identities = 26/94 (27%), Positives = 47/94 (49%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L S G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCSNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>dbj|BAB31193.2| unnamed protein product [Mus musculus]
Length = 576
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>dbj|BAB28345.1| unnamed protein product [Mus musculus]
Length = 405
Score = 142 bits (357), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN++ALLL G CLSGSSD IR
Sbjct: 176 MNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLR 282
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTE 189
>gb|AAH68705.1| LOC414700 protein [Xenopus laevis]
Length = 410
Score = 141 bits (356), Expect = 3e-33
Identities = 66/107 (61%), Positives = 80/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ K MKLKGHTDN++ALLL+ G CLSGSSD IR
Sbjct: 176 MNQMGTVIVSGSTEKVLRVWDPRTCQKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIR 235
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 236 LWSLGQQRCIATYRVHDEGVWALQVNEGFTHVYSGGRDRKIYCTDLR 282
Score = 48.5 bits (114), Expect = 4e-05
Identities = 25/94 (26%), Positives = 47/94 (49%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDPRSGSKT---MKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W+ + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 45 LFTAGRDSIIRIWNVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 104
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 105 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 138
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 87 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 146
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 147 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTE 189
>emb|CAF97674.1| unnamed protein product [Tetraodon nigroviridis]
Length = 707
Score = 141 bits (356), Expect = 3e-33
Identities = 65/107 (60%), Positives = 81/107 (74%)
Query: 1 MNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIR 60
MN+ GT++VSG TEKV+RVWDPR+ +K MKLKGHTDN+++LLL+ G CLSGSSD IR
Sbjct: 179 MNQMGTVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIR 238
Query: 61 LWDLGQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRDFSVSAVFLK 107
LW LGQQRC+ +Y VH + VWAL F+HVYSGGRD + L+
Sbjct: 239 LWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDKKIYCTDLR 285
Score = 47.8 bits (112), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 8 LVSGGTEKVVRVWDP---RSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
L + G + ++R+W + ++ HTD + ++L G+ +S SSD+ +++W+
Sbjct: 48 LFTAGRDSIIRIWSVYQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNA 107
Query: 65 GQQRCLHSYAVHTDSVWALASTSTFSHVYSGGRD 98
+ C+ + H D V ALA V S G D
Sbjct: 108 HKGFCMSTLRTHKDYVKALAYAKDKELVASAGLD 141
Score = 41.2 bits (95), Expect = 0.006
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 5 GTLLVSGGTEKVVRVWDPRSGSKTMKLKGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDL 64
G L+S ++ V+VW+ G L+ H D ++AL S D I LWD+
Sbjct: 90 GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV 149
Query: 65 GQQRCL---------HSYAVHTDSVWALASTSTFSHVYSGGRD 98
L S + + DS+++LA + + SG +
Sbjct: 150 NTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTE 192
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,090,220
Number of Sequences: 2540612
Number of extensions: 6839052
Number of successful extensions: 40167
Number of sequences better than 10.0: 5038
Number of HSP's better than 10.0 without gapping: 3635
Number of HSP's successfully gapped in prelim test: 1409
Number of HSP's that attempted gapping in prelim test: 18647
Number of HSP's gapped (non-prelim): 19758
length of query: 108
length of database: 863,360,394
effective HSP length: 84
effective length of query: 24
effective length of database: 649,948,986
effective search space: 15598775664
effective search space used: 15598775664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0062.3