BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.3
(388 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa... 46 0.002
ref|NP_919093.1| DNA binding protein-like [Oryza sativa (japonic... 44 0.006
ref|NP_174826.1| hypothetical protein [Arabidopsis thaliana] gi|... 44 0.008
ref|NP_914252.1| P0401G10.31 [Oryza sativa (japonica cultivar-gr... 44 0.008
dbj|BAD87135.1| DNA binding protein-like [Oryza sativa (japonica... 44 0.008
ref|NP_174868.1| hypothetical protein [Arabidopsis thaliana] 42 0.032
ref|XP_476960.1| DNA binding protein-like [Oryza sativa (japonic... 42 0.042
gb|AAV44036.1| hypothetical protein [Oryza sativa (japonica cult... 41 0.054
gb|AAM15454.1| putative replication protein A1 [Arabidopsis thal... 40 0.16
gb|AAF06081.1| F28J9.5 [Arabidopsis thaliana] gi|25403497|pir||D... 40 0.16
ref|NP_178584.2| hypothetical protein [Arabidopsis thaliana] 40 0.16
ref|NP_175703.1| replication protein-related [Arabidopsis thalia... 39 0.21
ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana] 39 0.21
ref|NP_850486.1| expressed protein [Arabidopsis thaliana] 39 0.21
emb|CAB86481.1| putative protein [Arabidopsis thaliana] gi|15229... 39 0.27
dbj|BAA95747.1| replication protein-like [Arabidopsis thaliana] 39 0.27
ref|NP_189742.1| hypothetical protein [Arabidopsis thaliana] 39 0.27
gb|AAD28056.1| putative replication protein A1 [Arabidopsis thal... 38 0.60
ref|NP_178895.2| hypothetical protein [Arabidopsis thaliana] 38 0.60
dbj|BAD87333.1| DNA binding protein-like [Oryza sativa (japonica... 37 1.0
>gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa (japonica
cultivar-group)]
Length = 2157
Score = 45.8 bits (107), Expect = 0.002
Identities = 42/165 (25%), Positives = 65/165 (38%), Gaps = 14/165 (8%)
Query: 128 LHINPVVEDQSVFNERFSGFE-IEEPVEYLGYRDSEFNLQDDFIHLHPAKTLLQLIHTEQ 186
L I V+E + F+ F ++ P +E + + L+P H +
Sbjct: 1802 LDIPEVLELKESFSANFRPVSWVDNPATGYNQDTAEEKTIQEILALNP--------HKNR 1853
Query: 187 RGVFIVQARIVSVIKAAGWAYPSCR-CYSELKVVNHGYSCSRCCRTMIMIFYFYRYRLNV 245
FIV + + W Y SCR CY K Y CS C I RY++ +
Sbjct: 1854 STRFIVNVTVRRICSENSWWYNSCRLCYRTSKPYGSSYKCSSCSNIGIPD---PRYKVVL 1910
Query: 246 HVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQPLAAHFPPEV 290
D ++ FIL A +IKK+ E +P P + + P E+
Sbjct: 1911 IAGDASSNATFILFGRVAHRLIKKSVESLIEDNP-PDSDYIPAEI 1954
>ref|NP_919093.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|24414047|dbj|BAC22296.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
gi|22831301|dbj|BAC16155.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 566
Score = 44.3 bits (103), Expect = 0.006
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 176 KTLLQLI----HTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCR 230
KT+ +L+ H +R F I + + W Y SC +C +K + Y C+ C
Sbjct: 258 KTVRELLDMNPHKNRRTRFQANVTIRKICNDSSWWYNSCEKCLRVVKPFGYTYKCTGCYN 317
Query: 231 TMIMIFYFYRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQ 280
+ + RY+L+V D +VFIL A I++K E +P+
Sbjct: 318 IAMAV---PRYKLSVLAGDDTADAVFILFGKIAQRIVRKPVELLVEQTPR 364
>ref|NP_174826.1| hypothetical protein [Arabidopsis thaliana] gi|25518393|pir||B86481
hypothetical protein F10O5.9 - Arabidopsis thaliana
gi|12322096|gb|AAG51090.1| hypothetical protein
[Arabidopsis thaliana]
Length = 567
Score = 43.9 bits (102), Expect = 0.008
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 8 FHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE--D 65
F L + + + W ++V+++ WK + ++ ++++++ D K+ A V KE
Sbjct: 5 FAYLKDVRPYKNAWRVQVKILHSWK---QYTSNTRETIELVISDEHGKKMHATVKKELVS 61
Query: 66 PITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSV---ESRELIVQSI 122
++ G IF +T G R TNH YK+ RT + +S L + S
Sbjct: 62 KFVHKLIVGEWVFIEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLASF 121
Query: 123 PNVTKLHINP 132
+ +NP
Sbjct: 122 SKIQSGELNP 131
>ref|NP_914252.1| P0401G10.31 [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 43.9 bits (102), Expect = 0.008
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 127 KLHINPVVEDQSVFNERFS-GFEIEEPVEYLGYRDSEFNLQDDFIHLHPAKTLLQLI-HT 184
K +IN + D E FS F+ P++++ FN D K +L+L H
Sbjct: 280 KWYINLDIPDVLKLKESFSVNFQ---PIKWVENAAPAFN--QDTPEEKTIKEILKLNPHK 334
Query: 185 EQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRTMIMIFYFYRYRL 243
+R FIV I S+ W Y SC RC K Y CS CC + + RY++
Sbjct: 335 YKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYRCSSCCYIGMPV---PRYKV 391
Query: 244 NVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
+ +D + F+L A +I + E +P
Sbjct: 392 VLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEENP 427
>dbj|BAD87135.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|57899172|dbj|BAD87224.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 609
Score = 43.9 bits (102), Expect = 0.008
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 127 KLHINPVVEDQSVFNERFS-GFEIEEPVEYLGYRDSEFNLQDDFIHLHPAKTLLQLI-HT 184
K +IN + D E FS F+ P++++ FN D K +L+L H
Sbjct: 228 KWYINLDIPDVLKLKESFSVNFQ---PIKWVENAAPAFN--QDTPEEKTIKEILKLNPHK 282
Query: 185 EQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRTMIMIFYFYRYRL 243
+R FIV I S+ W Y SC RC K Y CS CC + + RY++
Sbjct: 283 YKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYRCSSCCYIGMPV---PRYKV 339
Query: 244 NVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
+ +D + F+L A +I + E +P
Sbjct: 340 VLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEENP 375
>ref|NP_174868.1| hypothetical protein [Arabidopsis thaliana]
Length = 351
Score = 42.0 bits (97), Expect = 0.032
Identities = 65/320 (20%), Positives = 116/320 (35%), Gaps = 45/320 (14%)
Query: 21 WTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKEDPITKNIVPGGVYKFS 80
+ IKVRV+ LW+ S++M+L+D E ++ A + E+ + K
Sbjct: 22 YKIKVRVVRLWRL--------FKSIEMVLVDGEGTRVHASI--EEGLGKR---------- 61
Query: 81 IFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELIVQSIPNVTKLHINPVVEDQSVF 140
FQ G +R+ + + V S + I + KL S
Sbjct: 62 -FQHQFVSGESRIIDTFSFVYYDDVLGQIVDVGSLDSIKAKGKDTVKL---------SAG 111
Query: 141 NERFSGFEIEEPVEYLGYRDSEFNLQDDFIHLHPAKTLLQLIHTEQRGVFIVQARIVSVI 200
+E + E + S L ++F L+ KT+ +++ + AR+ +
Sbjct: 112 SEDLIHVDSENKTSH-----SAVTLYEEFFQLNEKKTVEDIVYACDVSTCVTIARVCFIE 166
Query: 201 KAAGWAYPSCRCYSELKVVNHGYSCSRCCRTMIMIFYFYRYRLNVHVSDGVQSSVFILSD 260
W Y +C+ + + + SC C + Y + V + D
Sbjct: 167 TMPKWYYIACKAHGDAGPI---CSCGVCDADATDLILRASYGASPEVK-------LLFFD 216
Query: 261 PEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYDVL 320
A +I K EF P+ PEV L+G +LFK+ L Y V
Sbjct: 217 GLAQCLIGKTAAEFFAEVPKESDPSILPEVLADLMGKTMLFKLSIGTDNLKSTKAAYVVE 276
Query: 321 HICSDSETMDKFSAKRTSVT 340
++ ++KF+ + T V+
Sbjct: 277 KFWEKTDMVEKFAKELTVVS 296
>ref|XP_476960.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|34394551|dbj|BAC83855.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 544
Score = 41.6 bits (96), Expect = 0.042
Identities = 32/138 (23%), Positives = 54/138 (38%), Gaps = 19/138 (13%)
Query: 190 FIVQARIVSVIKAAGWAYPSCR-CYSELKVVNHGYSCSRCCRTMIMIFYFYRYRLNVHVS 248
F ARI + ++GW Y +C C +K G+ C C T +I Y+LNV +
Sbjct: 292 FTCDARIKEIDVSSGWWYKACSICRKGVKPTLQGFECVNCDNTEPII--TPSYKLNVVIE 349
Query: 249 DGVQSSVFILSDPEATHIIKKACEEFAYAS-------PQPLAAHFPPEVEEKLVGAEVLF 301
D + + A ++++ + S P PL A L+G +F
Sbjct: 350 DNTDRAKIFMFGGMAEQVVRRTAADLVEESSANQLLLPSPLRA---------LIGRRFVF 400
Query: 302 KVRNDVRRLYDGCFCYDV 319
++ + G C+ V
Sbjct: 401 QIVISEQTFRTGQLCFQV 418
Score = 39.7 bits (91), Expect = 0.16
Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Query: 8 FHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKED-- 65
+ L+Q++ H W IKVRV W ++L++IL+D E V I A V + +
Sbjct: 3 YSLLSQINSTRHNWRIKVRVARSWHLSGTSKRRDFTALELILVDEEGVGITACVGENEIQ 62
Query: 66 PITKNIVPGGVYKFSIFQVT 85
+ +IV G Y F+V+
Sbjct: 63 KFSTSIVEGHAYFLRNFRVS 82
>gb|AAV44036.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 820
Score = 41.2 bits (95), Expect = 0.054
Identities = 27/104 (25%), Positives = 47/104 (44%), Gaps = 3/104 (2%)
Query: 7 PFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE-- 64
P + + +L+ W IKV+VI LW + ++MI++D E I + K+
Sbjct: 3 PSNLITELTPKNDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQLA 62
Query: 65 DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMI 108
+ I +Y F F+V H RV + K+L + T++
Sbjct: 63 NHFRPKIKINSIYTFKNFKV-MEHDKYRVLKNNLKILFYHDTIV 105
>gb|AAM15454.1| putative replication protein A1 [Arabidopsis thaliana]
gi|25363328|pir||A84465 probable replication protein A1
[imported] - Arabidopsis thaliana
Length = 521
Score = 39.7 bits (91), Expect = 0.16
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 173 HPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRT 231
+PAKT++ L++ G + + I ++ GW Y C +C ++++V S + +
Sbjct: 220 YPAKTIVDLLNGRDVGQWRILGSIFAIDTDWGWFYFGCPKCNRKIELVKESTSTVKRIQA 279
Query: 232 MIMIFYFY------------RYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
++ RY+L++ V D ++ + AT++I+K+ EE
Sbjct: 280 PTKPKFWCDKYQESITNVEARYKLHIRVMDQTGEIKLMVFENNATNLIRKSSEELLDGQY 339
Query: 280 QPLA-AHFPPEVEEKLVGAEVLFKVRNDVRRLYDG 313
+ + P+V L G F V + +Y G
Sbjct: 340 EEIEDPTIKPDVITNLCGKTFHFLVSVEKANIYGG 374
>gb|AAF06081.1| F28J9.5 [Arabidopsis thaliana] gi|25403497|pir||D86486 protein
F28J9.5 [imported] - Arabidopsis thaliana
Length = 483
Score = 39.7 bits (91), Expect = 0.16
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 201 KAAGWAYPSCRC-YSELKVVNHGYSCSRCCRTMIMIFYFYRYRLNVHVSDGVQSSVFILS 259
KA G A P C C + + YS ++M YRY+L + S G V +L
Sbjct: 289 KAHGDAGPICSCGVCDADATDVSYSVVYLL--IMMSLDLYRYKLILRASYGASPEVKLLF 346
Query: 260 -DPEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYD 318
D A +I K EF P+ PEV L+G +LFK+ L Y
Sbjct: 347 FDGLAQCLIGKTAAEFFAEVPKESDPSILPEVLADLMGKTMLFKLSIGTDNLKSTKAAYV 406
Query: 319 VLHICSDSETMDKFSAKRTSVT 340
V ++ ++KF+ + T V+
Sbjct: 407 VEKFWEKTDMVEKFAKELTVVS 428
>ref|NP_178584.2| hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 39.7 bits (91), Expect = 0.16
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 173 HPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRT 231
+PAKT++ L++ G + + I ++ GW Y C +C ++++V S + +
Sbjct: 271 YPAKTIVDLLNGRDVGQWRILGSIFAIDTDWGWFYFGCPKCNRKIELVKESTSTVKRIQA 330
Query: 232 MIMIFYFY------------RYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
++ RY+L++ V D ++ + AT++I+K+ EE
Sbjct: 331 PTKPKFWCDKYQESITNVEARYKLHIRVMDQTGEIKLMVFENNATNLIRKSSEELLDGQY 390
Query: 280 QPLA-AHFPPEVEEKLVGAEVLFKVRNDVRRLYDG 313
+ + P+V L G F V + +Y G
Sbjct: 391 EEIEDPTIKPDVITNLCGKTFHFLVSVEKANIYGG 425
>ref|NP_175703.1| replication protein-related [Arabidopsis thaliana]
gi|12324642|gb|AAG52278.1| putative replication protein;
94555-97079 [Arabidopsis thaliana]
Length = 566
Score = 39.3 bits (90), Expect = 0.21
Identities = 28/104 (26%), Positives = 48/104 (45%), Gaps = 5/104 (4%)
Query: 5 VIPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE 64
V P+ + L + W I+V+++ W + S S +M+L D + KI+A + KE
Sbjct: 4 VNPYTAIKNLKPFKTSWCIQVKILHAWN---HYTKGSGMSYEMMLADEDGNKIQAGIKKE 60
Query: 65 D--PITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRT 106
+ + + G F VT G+ R T H Y++ + S T
Sbjct: 61 HLLKLQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSST 104
>ref|NP_176623.2| hypothetical protein [Arabidopsis thaliana]
Length = 1231
Score = 39.3 bits (90), Expect = 0.21
Identities = 28/104 (26%), Positives = 48/104 (45%), Gaps = 5/104 (4%)
Query: 5 VIPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE 64
V P+ + L + W I+V+++ W + S S +M+L D + KI+A + KE
Sbjct: 4 VSPYTAIKNLKPFKTSWCIQVKILHAWN---HYTKGSGMSYEMMLADEDGNKIQAGIKKE 60
Query: 65 D--PITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRT 106
+ + + G F VT G+ R T H Y++ + S T
Sbjct: 61 HLLKLQRYVKIGHWTIIEEFSVTKATGLYRSTTHPYRINIQSST 104
>ref|NP_850486.1| expressed protein [Arabidopsis thaliana]
Length = 394
Score = 39.3 bits (90), Expect = 0.21
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 23 IKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE--DPITKNIVPGGVYKFS 80
+KVR+ LW ++ + ++L+D + +I+A + + + + G Y
Sbjct: 20 VKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCYMIM 79
Query: 81 IFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELIV 119
F+++ N G R ++H YK+ S T I E +E+ V
Sbjct: 80 NFEISDNGGSYRASSHPYKINFMSMTHIIGMQELKEVNV 118
>emb|CAB86481.1| putative protein [Arabidopsis thaliana]
gi|15229218|ref|NP_189896.1| hypothetical protein
[Arabidopsis thaliana] gi|11357850|pir||T47368
hypothetical protein F7M19.110 - Arabidopsis thaliana
Length = 269
Score = 38.9 bits (89), Expect = 0.27
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 6 IPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKED 65
+PF L L + + W I+V+++ +W+ + + S++MIL+D K+ A V +E
Sbjct: 7 LPFTPLKSLKPYKNAWRIQVKLLHVWR---QYSVKAGESIEMILVDEAGDKMYAAVRREQ 63
Query: 66 -PITKNIVPGGVYKFSIFQVTCN--HGVNRVTNHRYKLLLHSRTMIFP 110
+ + GV+K I +T N G R+++ +YK+ +T + P
Sbjct: 64 IKKFERCLTEGVWKI-ITTITLNPTSGKYRISDLKYKIGFVFKTTVSP 110
>dbj|BAA95747.1| replication protein-like [Arabidopsis thaliana]
Length = 170
Score = 38.9 bits (89), Expect = 0.27
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 6 IPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKED 65
+PF L L + + W I+V+++ +W+ + S++MIL++ K+ A V +E
Sbjct: 7 LPFTPLKSLKPYKNAWRIQVKLLHVWR---QYSVKVGESIEMILVNEVGDKMYAPVRREQ 63
Query: 66 -PITKNIVPGGVYKFSIFQVTCNH--GVNRVTNHRYKLLLHSRTMIFP 110
+ + GV+K I +T NH G R+++ +YK+ +T + P
Sbjct: 64 IEKIERCLTEGVWKI-ITTITLNHTSGQYRISDLKYKIGFVFKTTVSP 110
>ref|NP_189742.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 38.9 bits (89), Expect = 0.27
Identities = 29/104 (27%), Positives = 47/104 (44%), Gaps = 5/104 (4%)
Query: 7 PFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE-- 64
P L+ + + W ++VRV+ WKT + M+L D KI A V +E
Sbjct: 4 PIAYLDDIKPYKTYWRVQVRVLHTWKT---FTMQFGETFDMVLSDVRGKKIHASVKREHL 60
Query: 65 DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMI 108
+ + IV G F +T G + T+HRYK+ ++T +
Sbjct: 61 NRFERPIVRGEWRAIENFGLTYATGQYKATDHRYKMGFMAQTHV 104
>gb|AAD28056.1| putative replication protein A1 [Arabidopsis thaliana]
gi|25411404|pir||H84497 probable replication protein A1
[imported] - Arabidopsis thaliana
Length = 240
Score = 37.7 bits (86), Expect = 0.60
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 5 VIPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE 64
+I FH L +LS W I V V+ ++K ++L L+++L+D+ +IEA +
Sbjct: 1 MIQFHRLYELSPLVTGWAICVMVVRVYK---KILNHDAFELRLLLVDKLGTQIEATIGPR 57
Query: 65 ------DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELI 118
D I +N + F V N R T H +++L +T++ PS ++
Sbjct: 58 FSAFYYDRIKENQWK----TITTFIVRPNCEAIRTTPHEFRILFMEQTVVTPSTTKETVV 113
Query: 119 VQS 121
+ +
Sbjct: 114 LNN 116
>ref|NP_178895.2| hypothetical protein [Arabidopsis thaliana]
Length = 168
Score = 37.7 bits (86), Expect = 0.60
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 5 VIPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE 64
+I FH L +LS W I V V+ ++K ++L L+++L+D+ +IEA +
Sbjct: 1 MIQFHRLYELSPLVTGWAICVMVVRVYK---KILNHDAFELRLLLVDKLGTQIEATIGPR 57
Query: 65 ------DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELI 118
D I +N + F V N R T H +++L +T++ PS ++
Sbjct: 58 FSAFYYDRIKENQWK----TITTFIVRPNCEAIRTTPHEFRILFMEQTVVTPSTTKETVV 113
Query: 119 VQS 121
+ +
Sbjct: 114 LNN 116
>dbj|BAD87333.1| DNA binding protein-like [Oryza sativa (japonica cultivar-group)]
gi|57899579|dbj|BAD87158.1| DNA binding protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 1083
Score = 37.0 bits (84), Expect = 1.0
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 183 HTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRTMIMIFYFYRY 241
H +R F I + + W Y SC +C +K + Y+ +IM YRY
Sbjct: 796 HKNRRTRFQANVTIRKICNDSSWWYNSCEKCLRVVKPFGYTYN------EIIM----YRY 845
Query: 242 RLNVHVSDGVQSSVFILSDPEATHIIKKACE 272
+L+V D +VFIL A I++K E
Sbjct: 846 KLSVLAGDDTADAVFILFGKIAQRIVRKPVE 876
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,302,160
Number of Sequences: 2540612
Number of extensions: 25936473
Number of successful extensions: 56253
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 56235
Number of HSP's gapped (non-prelim): 34
length of query: 388
length of database: 863,360,394
effective HSP length: 130
effective length of query: 258
effective length of database: 533,080,834
effective search space: 137534855172
effective search space used: 137534855172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0060.3