BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.15
(372 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE59966.1| Hypothetical protein CBG03456 [Caenorhabditis br... 46 0.002
ref|XP_322327.1| predicted protein [Neurospora crassa] gi|289188... 45 0.004
gb|EAK98996.1| hypothetical protein CaO19.3254 [Candida albicans... 42 0.039
ref|XP_646885.1| hypothetical protein DDB0189968 [Dictyostelium ... 42 0.039
ref|NP_780438.1| serine/arginine repetitive matrix 2 [Mus muscul... 41 0.051
emb|CAI76921.1| Theileria-specific sub-telomeric protein, SVSP f... 41 0.051
ref|XP_629837.1| hypothetical protein DDB0201634 [Dictyostelium ... 41 0.067
gb|AAG45120.1| unknown [Dictyostelium discoideum] 41 0.067
emb|CAI51953.1| polymerase (RNA) II (DNA directed) polypeptide A... 40 0.088
ref|NP_033115.1| polymerase (RNA) II (DNA directed) polypeptide ... 40 0.088
ref|NP_723801.1| CG6043-PA, isoform A [Drosophila melanogaster] ... 40 0.088
ref|NP_723804.1| CG6043-PC, isoform C [Drosophila melanogaster] ... 40 0.088
ref|NP_609629.1| CG6043-PD, isoform D [Drosophila melanogaster] ... 40 0.088
emb|CAC39212.1| ALEX protein [Rattus norvegicus] 40 0.088
gb|AAM75065.1| RE28238p [Drosophila melanogaster] 40 0.088
gb|AAO24941.1| RE65015p [Drosophila melanogaster] 40 0.088
ref|NP_001019994.1| Alex protein [Rattus norvegicus] 40 0.088
emb|CAB69660.1| AF-4 [Homo sapiens] 40 0.088
gb|AAW44818.1| hypothetical protein CNG04440 [Cryptococcus neofo... 40 0.088
gb|AAD03033.1| unknown [Rattus norvegicus] 40 0.088
>emb|CAE59966.1| Hypothetical protein CBG03456 [Caenorhabditis briggsae]
Length = 401
Score = 45.8 bits (107), Expect = 0.002
Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 57/230 (24%)
Query: 66 PPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTS-------- 117
PP Q Y P + + SQPQ + QPQ+ C SP G+ NQP P+
Sbjct: 134 PPCQQQYQPPSPCQQ-SQPQPPQPQPQRTGGCLPSP----RGYENQPQPQQQYPQPQQQR 188
Query: 118 ---SFSSFFPRSVSHPSSHNPTNKPLQQ------------RTLSLSLPQR---QALTNAC 159
++S P+ P + P +P +Q T+ PQ+ Q + C
Sbjct: 189 GGCTYSQPQPQPQPQPPCYQPQPEPPRQTGGCLPGPYYPPNTMPPPQPQQPYPQQRSGGC 248
Query: 160 PKMATQKRKQQTPTPKTHK-TTPT----GYPQNPIKTYPLR--------IYVQVAVAGLG 206
+ A Q ++ Q P+T++ PT G Q+P + P + V V AG
Sbjct: 249 RQRAPQPQQPQPQYPRTNEFRAPTVECHGNGQDPCNSQPQQEDPCVGKVNIVSVDAAGKV 308
Query: 207 AHCGVVCDTAAEAGSEDEKEDRW--------CDSGNRAFQVGEGL-IAGD 247
H + +T +AG D +R+ C+S N+A + +G+ AGD
Sbjct: 309 DH--YLYETKKQAG--DVIGERYMCHVAISDCNSANQASETAQGMHWAGD 354
>ref|XP_322327.1| predicted protein [Neurospora crassa] gi|28918807|gb|EAA28476.1|
predicted protein [Neurospora crassa]
Length = 919
Score = 45.1 bits (105), Expect = 0.004
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 66 PPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPR 125
PP D TPA E PS + + +P+ H + P E Q P +T S P+
Sbjct: 155 PPTDPE-TPADEWSRPSWKEHNDAEPEPHVEPEPEP-EPKAKHRPQSPTQTRSHKR--PQ 210
Query: 126 SVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYP 185
S + SH P+Q R+ + S + + T A +Q R Q P P+ Y
Sbjct: 211 SPTQTRSHRRPQSPIQTRSHTKSQSKSHSKTQA----RSQPRPQPPPEPELRPEDDPDYE 266
Query: 186 QNPIKTYP 193
Q P+ P
Sbjct: 267 QEPVPEPP 274
>gb|EAK98996.1| hypothetical protein CaO19.3254 [Candida albicans SC5314]
gi|46439613|gb|EAK98929.1| hypothetical protein
CaO19.10764 [Candida albicans SC5314]
Length = 606
Score = 41.6 bits (96), Expect = 0.039
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 69 DQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPL--ENDGGFHNQ------------PP- 113
D Y+P + S P +S Q QQ + SSPL +N +NQ PP
Sbjct: 371 DSEYSPQTQRSTSSLPSQSNSQQQQQQQQSSSPLSSQNQNNQYNQQNLQSTSTGRQLPPT 430
Query: 114 --------PRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQ 165
P S+ S++ P S+S PS + PT ++R ++ + K+ +
Sbjct: 431 GPKKYQTSPPQSNSSNYSPSSLSQPSHYRPTEPRFERRIRDYQTDEQPSEEE---KLLIE 487
Query: 166 KRKQQ 170
+RK+Q
Sbjct: 488 RRKRQ 492
>ref|XP_646885.1| hypothetical protein DDB0189968 [Dictyostelium discoideum]
gi|60475008|gb|EAL72944.1| hypothetical protein
DDB0189968 [Dictyostelium discoideum]
Length = 951
Score = 41.6 bits (96), Expect = 0.039
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSS----------PLEND 105
PT + FY PP+ + + + Q Q+ + Q QQ ++ +S P END
Sbjct: 335 PTNIPSFYTPPPLPEQQQQQQQQQQQQQQQQQQQQQQQQQYFQSQQLQIKQEHIPPDEND 394
Query: 106 GGFHNQP-PPRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMAT 164
QP P+ S S+ + PT+ P ++T + +A N T
Sbjct: 395 KQKQQQPQQPQPHVKVEKSKSSKSNKKNKTPTSSPKPKKT------KTKAKANPKSSKKT 448
Query: 165 QKRKQQTP---TPKTHKTTPTGYP 185
+ QTP +P ++ TTP+ P
Sbjct: 449 TTTENQTPVNTSPTSNTTTPSSTP 472
>ref|NP_780438.1| serine/arginine repetitive matrix 2 [Mus musculus]
gi|26354955|dbj|BAC41104.1| unnamed protein product [Mus
musculus]
Length = 2607
Score = 41.2 bits (95), Expect = 0.051
Identities = 46/196 (23%), Positives = 73/196 (36%), Gaps = 66/196 (33%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPS-------------------QPQKSRIQPQQHKH 96
PTR + PP ++ TP + R+ S Q + PQ+ H
Sbjct: 692 PTRRSRSGSSPPKQKSKTPPRQSRSNSPQPKVKSGTPPRPGSVTNMQADECTATPQRQSH 751
Query: 97 CKSSPLENDGGFHNQPPPRTSSFSS---------------------------FFPRSVSH 129
+SSP DG ++ P R S S PR SH
Sbjct: 752 SESSP---DGEVKSRTPSRQSCSGSSPRVKSSTPPRQSPSRSSSPQPKVKTVISPRGRSH 808
Query: 130 PSSHNPTNKPLQQRTLSLSLPQRQALT-NACPKMATQKR-----------KQQTPTPKTH 177
SS +P+ + RT PQR++ + + CPK+ ++ R K + TP H
Sbjct: 809 SSSSSPSPSRVTSRT-----PQRKSRSVSPCPKVDSRLRHSRSRSSSPDSKMELGTPLRH 863
Query: 178 KTTPTGYPQNPIKTYP 193
+ + YP++ ++T P
Sbjct: 864 SGSTSPYPKSMLQTPP 879
Score = 35.8 bits (81), Expect = 2.2
Identities = 32/136 (23%), Positives = 55/136 (39%), Gaps = 15/136 (11%)
Query: 73 TPAAEVRNPSQPQKSR--IQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFF------- 123
TP A +PS P+++ + PQ+ + S +E P R+ S SS
Sbjct: 1352 TPRARSHSPSSPERNNKSVTPQRERSGSESSVEQKNLARTSPGQRSRSGSSQELDGKPSA 1411
Query: 124 -----PRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMA-TQKRKQQTPTPKTH 177
S S P S T PL+QR+ S S P+ + + P+++ + + P+
Sbjct: 1412 SPQERSESDSSPDSKPKTRTPLRQRSHSGSSPEVDSKSRHSPRLSRSGSSPEMKDKPRVL 1471
Query: 178 KTTPTGYPQNPIKTYP 193
+ +G +P P
Sbjct: 1472 QRAQSGTDSSPEHKIP 1487
Score = 34.3 bits (77), Expect = 6.3
Identities = 33/134 (24%), Positives = 57/134 (41%), Gaps = 28/134 (20%)
Query: 67 PVDQAYTPAAEVRNPSQP--QKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSF-- 122
P ++ TP R+ S P QKS+ P+Q + P G PPR S ++
Sbjct: 685 PKQKSQTPTRRSRSGSSPPKQKSKTPPRQSRSNSPQPKVKSG-----TPPRPGSVTNMQA 739
Query: 123 -----FPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTH 177
P+ SH S + + ++ RT P RQ+ + + P++ + +Q+P+ +
Sbjct: 740 DECTATPQRQSH--SESSPDGEVKSRT-----PSRQSCSGSSPRVKSSTPPRQSPSRSSS 792
Query: 178 KTTPTGYPQNPIKT 191
PQ +KT
Sbjct: 793 -------PQPKVKT 799
>emb|CAI76921.1| Theileria-specific sub-telomeric protein, SVSP family member,
putative [Theileria annulata]
Length = 686
Score = 41.2 bits (95), Expect = 0.051
Identities = 32/124 (25%), Positives = 48/124 (37%), Gaps = 12/124 (9%)
Query: 66 PPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPR 125
PP+ P +P QP + QP Q ++S E Q P R + PR
Sbjct: 233 PPIQPTQLPTITKESPQQPSQ---QPSQETSQETSQPETP-----QQPTRIPRQPTRIPR 284
Query: 126 SVSHPSSHNPTNKPLQQRTLSLSLP----QRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
+HP H P + ++ R L P Q + T K AT+ + P+ ++ K
Sbjct: 285 QRTHPKEHKPIHPNIRPRIKILRRPTQPIQSKEPTKQDSKAATEPSQTMEPSQQSSKEPS 344
Query: 182 TGYP 185
T P
Sbjct: 345 TEEP 348
>ref|XP_629837.1| hypothetical protein DDB0201634 [Dictyostelium discoideum]
gi|60463155|gb|EAL61348.1| hypothetical protein
DDB0201634 [Dictyostelium discoideum]
Length = 1222
Score = 40.8 bits (94), Expect = 0.067
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQ--PQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFP 124
P D + P A P+ P R+ P Q + + +EN F +P P + + S
Sbjct: 732 PTDTSSPPNATTPQPTPPPLKRVAKPPVQQQQPSNENIENITQFKLKPSPASPTSPSSPT 791
Query: 125 RSVSHPSSHNPTNKPLQQRTLSL---SLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
++ P PL++ + S P +A T + P +A + + P + T+P
Sbjct: 792 IDPISTTTKPPARPPLKKSAAAAAPPSPPNEEATTTSPPTLAAKPKVALRNGPSSAPTSP 851
Query: 182 TGYPQNPI 189
PQ P+
Sbjct: 852 LSQPQQPL 859
>gb|AAG45120.1| unknown [Dictyostelium discoideum]
Length = 1220
Score = 40.8 bits (94), Expect = 0.067
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQ--PQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFP 124
P D + P A P+ P R+ P Q + + +EN F +P P + + S
Sbjct: 730 PTDTSSPPNATTPQPTPPPLKRVAKPPVQQQQPSNENIENITQFKLKPSPASPTSPSSPT 789
Query: 125 RSVSHPSSHNPTNKPLQQRTLSL---SLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
++ P PL++ + S P +A T + P +A + + P + T+P
Sbjct: 790 IDPISTTTKPPARPPLKKSAAAAAPPSPPNEEATTTSPPTLAAKPKVALRNGPSSAPTSP 849
Query: 182 TGYPQNPI 189
PQ P+
Sbjct: 850 LSQPQQPL 857
>emb|CAI51953.1| polymerase (RNA) II (DNA directed) polypeptide A [Mus musculus]
gi|133327|sp|P08775|RPB1_MOUSE DNA-directed RNA
polymerase II largest subunit (RPB1)
Length = 1970
Score = 40.4 bits (93), Expect = 0.088
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGG--FHNQPPPRTSSFSSFFP 124
P YTP + +P+ P S P + +SP + + Q P T S S+ P
Sbjct: 1771 PTSPNYTPTSPNYSPTSPSYSPTSPS---YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP 1827
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGY 184
S S++PT+ + S S P T A PK + K +PK T+PT
Sbjct: 1828 SS----PSYSPTSPKYTPTSPSYS-PSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYS 1882
Query: 185 PQNP 188
P P
Sbjct: 1883 PTTP 1886
Score = 39.3 bits (90), Expect = 0.20
Identities = 31/125 (24%), Positives = 50/125 (39%), Gaps = 13/125 (10%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRS 126
P +Y+P + +PS P R PQ + SSP + P + S+S P+
Sbjct: 1792 PTSPSYSPTSPSYSPSSP---RYTPQSPTYTPSSPSYS---------PSSPSYSPTSPKY 1839
Query: 127 VSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQ 186
S++P++ + S P + PK + TPK T+PT P
Sbjct: 1840 TPTSPSYSPSSPEYTPASPKYS-PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 187 NPIKT 191
+P+ T
Sbjct: 1899 SPVYT 1903
Score = 36.6 bits (83), Expect = 1.3
Identities = 31/127 (24%), Positives = 47/127 (36%), Gaps = 9/127 (7%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP-----PRTSSFSS 121
P YTP++ +PS P S P K+ +SP + P P + +S
Sbjct: 1813 PQSPTYTPSSPSYSPSSPSYSPTSP---KYTPTSPSYSPSSPEYTPASPKYSPTSPKYSP 1869
Query: 122 FFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
P+ +++PT P T P T PK + +PK T+P
Sbjct: 1870 TSPKYSPTSPTYSPTT-PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP 1928
Query: 182 TGYPQNP 188
T P +P
Sbjct: 1929 TYSPTSP 1935
>ref|NP_033115.1| polymerase (RNA) II (DNA directed) polypeptide A [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II
Length = 1932
Score = 40.4 bits (93), Expect = 0.088
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGG--FHNQPPPRTSSFSSFFP 124
P YTP + +P+ P S P + +SP + + Q P T S S+ P
Sbjct: 1733 PTSPNYTPTSPNYSPTSPSYSPTSPS---YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP 1789
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGY 184
S S++PT+ + S S P T A PK + K +PK T+PT
Sbjct: 1790 SS----PSYSPTSPKYTPTSPSYS-PSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYS 1844
Query: 185 PQNP 188
P P
Sbjct: 1845 PTTP 1848
Score = 39.3 bits (90), Expect = 0.20
Identities = 31/125 (24%), Positives = 50/125 (39%), Gaps = 13/125 (10%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRS 126
P +Y+P + +PS P R PQ + SSP + P + S+S P+
Sbjct: 1754 PTSPSYSPTSPSYSPSSP---RYTPQSPTYTPSSPSYS---------PSSPSYSPTSPKY 1801
Query: 127 VSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQ 186
S++P++ + S P + PK + TPK T+PT P
Sbjct: 1802 TPTSPSYSPSSPEYTPASPKYS-PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1860
Query: 187 NPIKT 191
+P+ T
Sbjct: 1861 SPVYT 1865
Score = 36.6 bits (83), Expect = 1.3
Identities = 31/127 (24%), Positives = 47/127 (36%), Gaps = 9/127 (7%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP-----PRTSSFSS 121
P YTP++ +PS P S P K+ +SP + P P + +S
Sbjct: 1775 PQSPTYTPSSPSYSPSSPSYSPTSP---KYTPTSPSYSPSSPEYTPASPKYSPTSPKYSP 1831
Query: 122 FFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
P+ +++PT P T P T PK + +PK T+P
Sbjct: 1832 TSPKYSPTSPTYSPTT-PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP 1890
Query: 182 TGYPQNP 188
T P +P
Sbjct: 1891 TYSPTSP 1897
>ref|NP_723801.1| CG6043-PA, isoform A [Drosophila melanogaster]
gi|24584071|ref|NP_723802.1| CG6043-PB, isoform B
[Drosophila melanogaster] gi|22946390|gb|AAN10831.1|
CG6043-PB, isoform B [Drosophila melanogaster]
gi|22946389|gb|AAF53274.2| CG6043-PA, isoform A
[Drosophila melanogaster]
Length = 759
Score = 40.4 bits (93), Expect = 0.088
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRI--QPQQHKHCKSSPLENDGGFHNQPP 113
PT VG Y P + P++PQ RI Q QQ + SP+ Q
Sbjct: 501 PTNVGSLYIAP-----------LAQPTEPQAQRILLQQQQQSSARDSPMRQ----LPQQQ 545
Query: 114 PRTSS----FSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
P+T+ SS P + N + TL + PQ Q + P+ Q ++Q
Sbjct: 546 PQTNQPMRWLSSQPASKEQAPWARLEENGNVLPSTLRQTTPQPQVVPQQQPQQQQQPQQQ 605
Query: 170 QTPT-PKTHKTTPTGYPQNPIKTYPLRI 196
Q PT + GY P+ P+ +
Sbjct: 606 QQPTFYQPQLVQGNGYGPTPVSAAPISL 633
>ref|NP_723804.1| CG6043-PC, isoform C [Drosophila melanogaster]
gi|22946392|gb|AAN10833.1| CG6043-PC, isoform C
[Drosophila melanogaster]
Length = 836
Score = 40.4 bits (93), Expect = 0.088
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRI--QPQQHKHCKSSPLENDGGFHNQPP 113
PT VG Y P + P++PQ RI Q QQ + SP+ Q
Sbjct: 578 PTNVGSLYIAP-----------LAQPTEPQAQRILLQQQQQSSARDSPMRQ----LPQQQ 622
Query: 114 PRTSS----FSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
P+T+ SS P + N + TL + PQ Q + P+ Q ++Q
Sbjct: 623 PQTNQPMRWLSSQPASKEQAPWARLEENGNVLPSTLRQTTPQPQVVPQQQPQQQQQPQQQ 682
Query: 170 QTPT-PKTHKTTPTGYPQNPIKTYPLRI 196
Q PT + GY P+ P+ +
Sbjct: 683 QQPTFYQPQLVQGNGYGPTPVSAAPISL 710
>ref|NP_609629.1| CG6043-PD, isoform D [Drosophila melanogaster]
gi|22946388|gb|AAN10830.1| CG6043-PD, isoform D
[Drosophila melanogaster]
Length = 918
Score = 40.4 bits (93), Expect = 0.088
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRI--QPQQHKHCKSSPLENDGGFHNQPP 113
PT VG Y P + P++PQ RI Q QQ + SP+ Q
Sbjct: 501 PTNVGSLYIAP-----------LAQPTEPQAQRILLQQQQQSSARDSPMRQ----LPQQQ 545
Query: 114 PRTSS----FSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
P+T+ SS P + N + TL + PQ Q + P+ Q ++Q
Sbjct: 546 PQTNQPMRWLSSQPASKEQAPWARLEENGNVLPSTLRQTTPQPQVVPQQQPQQQQQPQQQ 605
Query: 170 QTPT-PKTHKTTPTGYPQNPIKTYPLRI 196
Q PT + GY P+ P+ +
Sbjct: 606 QQPTFYQPQLVQGNGYGPTPVSAAPISL 633
>emb|CAC39212.1| ALEX protein [Rattus norvegicus]
Length = 356
Score = 40.4 bits (93), Expect = 0.088
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 9/93 (9%)
Query: 101 PLENDGGFHNQPPPRTSSFSSFFPRSV--SHPSSHNPTNKPLQQRTLSLSLPQRQALTNA 158
PL + NQPPP S P S S P S P+ P Q T SLP Q+ T
Sbjct: 18 PLPSPKTTENQPPPPPPSQPPSQPLSQPPSQPPSQPPSQLPRQSLTPKPSLPPGQSPT-- 75
Query: 159 CPKMATQKRKQQTPTPKTHKTTPTGYPQNPIKT 191
PK + Q R+ P P+ ++ P G P +P+++
Sbjct: 76 -PKRSPQPRQ---PLPR-RRSLPPGQPPSPLRS 103
>gb|AAM75065.1| RE28238p [Drosophila melanogaster]
Length = 836
Score = 40.4 bits (93), Expect = 0.088
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRI--QPQQHKHCKSSPLENDGGFHNQPP 113
PT VG Y P + P++PQ RI Q QQ + SP+ Q
Sbjct: 578 PTNVGSLYIAP-----------LAQPTEPQAQRILLQQQQQSSARDSPMRQ----LPQQQ 622
Query: 114 PRTSS----FSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
P+T+ SS P + N + TL + PQ Q + P+ Q ++Q
Sbjct: 623 PQTNQPMRWLSSQPASKEQAPWARLEENGNVLPSTLRQTTPQPQVVPQQQPQQQQQPQQQ 682
Query: 170 QTPT-PKTHKTTPTGYPQNPIKTYPLRI 196
Q PT + GY P+ P+ +
Sbjct: 683 QQPTFYQPQLVQGNGYGPTPVSAAPISL 710
>gb|AAO24941.1| RE65015p [Drosophila melanogaster]
Length = 756
Score = 40.4 bits (93), Expect = 0.088
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRI--QPQQHKHCKSSPLENDGGFHNQPP 113
PT VG Y P + P++PQ RI Q QQ + SP+ Q
Sbjct: 501 PTNVGSLYIAP-----------LAQPTEPQAQRILLQQQQQSSARDSPMRQ----LPQQQ 545
Query: 114 PRTSS----FSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
P+T+ SS P + N + TL + PQ Q + P+ Q ++Q
Sbjct: 546 PQTNQPMRWLSSQPASKEQAPWARLEENGNVLPSTLRQTTPQPQVVPQQQPQQQQQPQQQ 605
Query: 170 QTPT-PKTHKTTPTGYPQNPIKTYPLRI 196
Q PT + GY P+ P+ +
Sbjct: 606 QQPTFYQPQLVQGNGYGPTPVSAAPISL 633
>ref|NP_001019994.1| Alex protein [Rattus norvegicus]
Length = 740
Score = 40.4 bits (93), Expect = 0.088
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 9/93 (9%)
Query: 101 PLENDGGFHNQPPPRTSSFSSFFPRSV--SHPSSHNPTNKPLQQRTLSLSLPQRQALTNA 158
PL + NQPPP S P S S P S P+ P Q T SLP Q+ T
Sbjct: 402 PLPSPKTTENQPPPPPPSQPPSQPLSQPPSQPPSQPPSQLPRQSLTPKPSLPPGQSPT-- 459
Query: 159 CPKMATQKRKQQTPTPKTHKTTPTGYPQNPIKT 191
PK + Q R+ P P+ ++ P G P +P+++
Sbjct: 460 -PKRSPQPRQ---PLPR-RRSLPPGQPPSPLRS 487
>emb|CAB69660.1| AF-4 [Homo sapiens]
Length = 1211
Score = 40.4 bits (93), Expect = 0.088
Identities = 27/97 (27%), Positives = 41/97 (41%), Gaps = 8/97 (8%)
Query: 68 VDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQ---PPPRTSSFSSFFP 124
+D T ++ R P + +S P++H K S H++ PPP++SS + P
Sbjct: 515 LDNWLTKVSQPRAPPEGPRSTEPPRRHPESKGSSDSATSQEHSESKDPPPKSSSKAPRAP 574
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPK 161
HP + P QQ PQRQ + PK
Sbjct: 575 PEAPHPGKRSCQKSPAQQEP-----PQRQTVGTKQPK 606
>gb|AAW44818.1| hypothetical protein CNG04440 [Cryptococcus neoformans var.
neoformans JEC21] gi|58269938|ref|XP_572125.1|
hypothetical protein CNG04440 [Cryptococcus neoformans
var. neoformans JEC21]
Length = 1538
Score = 40.4 bits (93), Expect = 0.088
Identities = 59/233 (25%), Positives = 86/233 (36%), Gaps = 35/233 (15%)
Query: 75 AAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVSHPSSHN 134
AA+VR+P+ + QP Q PL H Q PP P S S +
Sbjct: 802 AAQVRSPNLSSRLS-QPAQPVVL---PLSQPPQTHVQYPPSP-------PHSASETVRQS 850
Query: 135 PTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQNPIKTYPL 194
T PLQ +T S Q + + ++ + Q P P+ + + + +P P+K
Sbjct: 851 QT-VPLQPQTQSQPQSQSHSQLQQRTQPSSHRSPQNVPAPQASQASHSTHPTPPVKPLSS 909
Query: 195 RIYVQVAV-AGLGAHCGVVCD--TAAEAGSEDEKEDRWCDSGNRAFQVGEGLIA--GDGF 249
+ AV G G + G T G+ ++ D N VG G A G
Sbjct: 910 QSKGSTAVNTGQGVNQGTTIPPLTGTRTGAGTDQHQHQLDVKNMEAVVGAGARAENSKGT 969
Query: 250 VTELLEVQRLDEDLEGKERLGRSGQRWLGLAVHRWLVRKRWGKRKNRKGKGKE 302
L++ Q ED + GR +K GK +KGKGKE
Sbjct: 970 NQSLIQSQVKSEDKKDNSVKGR---------------KKNAGK---KKGKGKE 1004
>gb|AAD03033.1| unknown [Rattus norvegicus]
Length = 738
Score = 40.4 bits (93), Expect = 0.088
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 9/93 (9%)
Query: 101 PLENDGGFHNQPPPRTSSFSSFFPRSV--SHPSSHNPTNKPLQQRTLSLSLPQRQALTNA 158
PL + NQPPP S P S S P S P+ P Q T SLP Q+ T
Sbjct: 400 PLPSPKTTENQPPPPPPSQPPSQPLSQPPSQPPSQPPSQLPRQSLTPKPSLPPGQSPT-- 457
Query: 159 CPKMATQKRKQQTPTPKTHKTTPTGYPQNPIKT 191
PK + Q R+ P P+ ++ P G P +P+++
Sbjct: 458 -PKRSPQPRQ---PLPR-RRSLPPGQPPSPLRS 485
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 708,853,680
Number of Sequences: 2540612
Number of extensions: 33664676
Number of successful extensions: 105647
Number of sequences better than 10.0: 315
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 104962
Number of HSP's gapped (non-prelim): 864
length of query: 372
length of database: 863,360,394
effective HSP length: 129
effective length of query: 243
effective length of database: 535,621,446
effective search space: 130156011378
effective search space used: 130156011378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0060.15