BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.14
(651 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 347 7e-94
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 342 3e-92
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 338 2e-91
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 338 2e-91
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 337 9e-91
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 336 1e-90
emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulg... 334 5e-90
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 333 1e-89
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 328 3e-88
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 328 3e-88
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 328 3e-88
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 327 6e-88
gb|AAX95804.1| retrotransposon protein, putative, unclassified [... 327 1e-87
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 325 2e-87
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 324 6e-87
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 324 6e-87
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 321 4e-86
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 321 4e-86
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 315 2e-84
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 315 2e-84
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 347 bits (890), Expect = 7e-94
Identities = 214/658 (32%), Positives = 330/658 (49%), Gaps = 19/658 (2%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR W+ + ++ W G +V EKL R + W K++ + R
Sbjct: 24 FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFV--EKLTNCRRAISKWRKSL---IPFGR 78
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
+ + LDV + + S+EE+ L R E QK+RS W+ GD N
Sbjct: 79 QTIEDLKAELDVAQRDDDRSREEIT---ELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNN 135
Query: 121 SGFFHSTINWKRRTNSIVGLWVE-GVWEEDPSRVKAAVESFFEAKFKS---DV*DRPRLE 176
S FFH+ +R N I GL E G+W + ++ S+F+ F + V D
Sbjct: 136 SKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQVFDEAL-- 193
Query: 177 GVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIK 236
G ++D N +L E E++ A++ K+PGPDG F ++ W ++K D++
Sbjct: 194 GEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLS 253
Query: 237 AVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVV 296
V F + G + + N + I LIPK P + E RPISL YKVISK+L RL TV+
Sbjct: 254 LVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVL 313
Query: 297 GKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRK---KQPSIIFKVDYEKAYDTVDWSFL 353
+I E Q AFV R + D++++ E+ H ++ K + K D KAYD V+W+F+
Sbjct: 314 PNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFI 373
Query: 354 EYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAE 413
E ++ +M FC KWISWIM C+ + VL+NG P G ERGLRQGDPL+P+LF+ E
Sbjct: 374 EALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTE 433
Query: 414 GLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFEL 473
L + + R + G+KV A VS L FADD++F +A + + IL+ +E
Sbjct: 434 VLIANIRKAERQNLITGIKV-ATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYES 492
Query: 474 VSGLKVNFHKSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPV 532
VSG ++NF KS + +E + L + YLG+P S K + V
Sbjct: 493 VSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFV 552
Query: 533 IKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWG 592
++++R+ W K +S GG+ +I+SV + LP +S FR+P + + F W
Sbjct: 553 RDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWS 612
Query: 593 ASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
++ + + W+ W +C K GGLG +++D FN +LL K LWR T +L+ +V +
Sbjct: 613 SNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFK 670
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 342 bits (876), Expect = 3e-92
Identities = 175/469 (37%), Positives = 274/469 (58%), Gaps = 3/469 (0%)
Query: 183 LSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFW 242
+++ D LI P+ E+++ V+ NKSPGPDG F FWD++K D++ + +F
Sbjct: 227 VTEEDAIGLITPVTMEELRNVVFDLKKNKSPGPDGMPGEFYIHFWDLIKHDLLDLINDFQ 286
Query: 243 RRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDE 302
R N I LIPK + +FRPI L+ +K+I+K+L RL+ + +I +
Sbjct: 287 RNSVNIDRLNFGVITLIPKTKDASQIQKFRPICLLNVSFKIITKVLMNRLNGTMAYIISK 346
Query: 303 RQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNF 362
+Q AF+ NR +++ VV+L+EV++ + +KKQ I+FKVD+EKAYD V+W F+ M+ F
Sbjct: 347 QQTAFLKNRFIMEGVVILHEVLNSIHQKKQSGILFKVDFEKAYDKVNWVFIYRMLKAKGF 406
Query: 363 CSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNS 422
+W WIM + V+V VN FK +GLRQGDPL+P LF AE L L Q +
Sbjct: 407 PDQWCDWIMKVVMGGKVAVKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQRA 466
Query: 423 VRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFH 482
S +G+ D ++++LQ+ADDT+FL + + +LK IL FE +SGLK+NF+
Sbjct: 467 EENSLIEGLGTNGDN--KIAILQYADDTIFLINDKLDHAKNLKYILCLFEQLSGLKINFN 524
Query: 483 KSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLAL 542
KS++ +++ CKV ++P YLGIP+ + K W+ KM ++L
Sbjct: 525 KSEVFCFGEAKEKQDLYSNIFTCKVGSLPLKYLGIPIDQKRILNKDWKLAENKMEHKLGC 584
Query: 543 WKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAW 602
W+ +L S GGR+ L+ S LS++P+ +SF+R+P V + + + FLW G ++
Sbjct: 585 WQGRLQSIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHL 644
Query: 603 VKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
V W VC P+D GGLG+ DL+ N+++LGKW+WR ++ W ++I A
Sbjct: 645 VNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLE-NEEGWWQEIIYA 692
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 338 bits (868), Expect = 2e-91
Identities = 199/555 (35%), Positives = 310/555 (55%), Gaps = 15/555 (2%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVKAAV-ESFFEAKF 165
QK+R +WLA GD+N+GFFH+T++ +R N + L E E + K + SFFE F
Sbjct: 316 QKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLF 375
Query: 166 KSD--V*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFI 223
S + LEG+ K S+ +++ LI + E+E+ +AV++ +PGPDGF F
Sbjct: 376 TSTYILTHNNHLEGLQAKVTSEMNHN-LIQEVTELEVYNAVFSINKESAPGPDGFTALFF 434
Query: 224 KQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKV 283
+Q WD++K ++ + F+ G + N + I LIPK+ SPQ +++ RPISL +YK+
Sbjct: 435 QQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKI 494
Query: 284 ISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQPSIIFKVD 340
ISK+L RL + ++ Q AFV R + D+++V +E+IH ++ R + + FK D
Sbjct: 495 ISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTD 554
Query: 341 YEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQG 400
KAYD V+W FLE MM + F +KWISWIM C+ S S SVL+NG P G RG+RQG
Sbjct: 555 MSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQG 614
Query: 401 DPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQN 460
DPL+P LF+ E L + + + K G++ D + V+ L FADDT+ + +AT Q
Sbjct: 615 DPLSPALFVLCTEALIHILNKAEQAGKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQE 673
Query: 461 LVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCK----VMTIPFVYLG 516
L L + +SG +N +KS AI V Q ++ + + YLG
Sbjct: 674 CEELMQCLSQYGQLSGQMINLNKS---AITFGKNVDIQIKDWIKSRSGISLEGGTGKYLG 730
Query: 517 IPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPA 576
+P S + + +K+++RL W K +S GG+ L++S+ ALP+ +S F++P
Sbjct: 731 LPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPK 790
Query: 577 CVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWR 636
+ + +M DF W + ++I W+ W + PKD GG G KDL FN++LL K WR
Sbjct: 791 NLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWR 850
Query: 637 WRTKKQALWCQVIRA 651
+K +L+ +V ++
Sbjct: 851 VLQEKGSLFSRVFQS 865
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 338 bits (868), Expect = 2e-91
Identities = 199/555 (35%), Positives = 310/555 (55%), Gaps = 15/555 (2%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVKAAV-ESFFEAKF 165
QK+R +WLA GD+N+GFFH+T++ +R N + L E E + K + SFFE F
Sbjct: 337 QKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSFFENLF 396
Query: 166 KSD--V*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFI 223
S + LEG+ K S+ +++ LI + E+E+ +AV++ +PGPDGF F
Sbjct: 397 TSTYILTHNNHLEGLQAKVTSEMNHN-LIQEVTELEVYNAVFSINKESAPGPDGFTALFF 455
Query: 224 KQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKV 283
+Q WD++K ++ + F+ G + N + I LIPK+ SPQ +++ RPISL +YK+
Sbjct: 456 QQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKI 515
Query: 284 ISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQPSIIFKVD 340
ISK+L RL + ++ Q AFV R + D+++V +E+IH ++ R + + FK D
Sbjct: 516 ISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTD 575
Query: 341 YEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQG 400
KAYD V+W FLE MM + F +KWISWIM C+ S S SVL+NG P G RG+RQG
Sbjct: 576 MSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQG 635
Query: 401 DPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQN 460
DPL+P LF+ E L + + + K G++ D + V+ L FADDT+ + +AT Q
Sbjct: 636 DPLSPALFVLCTEALIHILNKAEQAGKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQE 694
Query: 461 LVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCK----VMTIPFVYLG 516
L L + +SG +N +KS AI V Q ++ + + YLG
Sbjct: 695 CEELMQCLSQYGQLSGQMINLNKS---AITFGKNVDIQIKDWIKSRSGISLEGGTGKYLG 751
Query: 517 IPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPA 576
+P S + + +K+++RL W K +S GG+ L++S+ ALP+ +S F++P
Sbjct: 752 LPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPK 811
Query: 577 CVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWR 636
+ + +M DF W + ++I W+ W + PKD GG G KDL FN++LL K WR
Sbjct: 812 NLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWR 871
Query: 637 WRTKKQALWCQVIRA 651
+K +L+ +V ++
Sbjct: 872 VLQEKGSLFSRVFQS 886
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 337 bits (863), Expect = 9e-91
Identities = 174/469 (37%), Positives = 269/469 (57%), Gaps = 4/469 (0%)
Query: 183 LSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFW 242
++D +N +L E+E+K+A++ NK+PGPDGF F + FWDV+K D++ +F
Sbjct: 1135 VTDVENELLSESFKELEVKEAIFQMEHNKAPGPDGFPAEFYQVFWDVIKDDLMAVFCDFH 1194
Query: 243 RRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDE 302
I L+PK + ++RPI L+ +K+ +K++A R++ V KVI
Sbjct: 1195 EGTLPLHRLKFGIITLLPKQKDASRIQQYRPICLLNVSFKIFTKVMANRIALVAQKVIKP 1254
Query: 303 RQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNF 362
Q F+ RN+++ VV+L+E +HE+ +KK+ +I K+D+EKAYD VDW FL+ + F
Sbjct: 1255 SQTTFLSGRNIMEGVVILHETLHELHKKKKNGVILKLDFEKAYDKVDWKFLQQSLRMKGF 1314
Query: 363 CSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNS 422
SKW WI +R SV+V VN F+ +GLRQGDPL+P LF V + L L Q +
Sbjct: 1315 SSKWCDWIDSIVRGGSVAVKVNDEIGSYFQTRKGLRQGDPLSPILFNLVVDMLAILIQRA 1374
Query: 423 VRLSKFKGVKVG-ADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNF 481
+FKGV D GL S+LQ+ADDT+ + + LK +L FE +S LK+NF
Sbjct: 1375 KDQGRFKGVVPHLVDNGL--SILQYADDTILFMDHDLDEARDLKLVLSTFEKLSSLKINF 1432
Query: 482 HKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLA 541
+KS+L V H++ C PF YLGI + + K W+ V ++++ +L+
Sbjct: 1433 YKSELFCYGKAKDVEHEYVKLFGCDTEDYPFKYLGIRMHHKRINNKDWQGVEERIQKKLS 1492
Query: 542 LWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIA 601
WK K +S GGR+ LI SVLS L + LSFF IP ++K + F W + K+
Sbjct: 1493 SWKGKFLSVGGRLVLINSVLSNLAIFMLSFFEIPKGILKKLDYYRSRFFWQCDEHKKKYR 1552
Query: 602 WVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
+W +C+PK+ GGLGI++L++ N+ LL KWL++ ++ +W ++R
Sbjct: 1553 LARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYK-LINEEGVWQDILR 1600
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 336 bits (862), Expect = 1e-90
Identities = 208/631 (32%), Positives = 348/631 (54%), Gaps = 22/631 (3%)
Query: 32 YVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEE----TGLSQEEVATR 87
YV E L+ + +L+ WN+ VFGD+ R+E++V D+KE + LS + +A
Sbjct: 129 YVQLEPLQ--QRKLRKWNREVFGDIHVRKEKLVA-----DIKEVQDLLGVVLSDDLLAKE 181
Query: 88 ESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGL-WVEGVW 146
E LL + VL E+L QK+R +++ GD+N+ FFH++ +RR N I L + W
Sbjct: 182 EVLLKEMDLVLEQEETLWFQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRW 241
Query: 147 EEDPSRVKAAVESFFEAKFK-SDV*D-RPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAV 204
D ++A ++++ + DV + R L F ++S+++ + L+ + E+ AV
Sbjct: 242 VTDKVELEAMALTYYKRLYSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAV 301
Query: 205 WACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNS 264
+ G K+PGPDG+ F +Q W+ + V + V EF+ G N + +VLI KV
Sbjct: 302 KSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAK 361
Query: 265 PQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVI 324
P+ + +FRP+SL ++K+I+K++ TRL V+ K+I Q +F+ R +D++V++ E +
Sbjct: 362 PERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAV 421
Query: 325 HEVKRKK--QPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVL 382
H ++RKK + ++ K+D EKAYD V W FL+ + W S IM + S+SVL
Sbjct: 422 HSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVL 481
Query: 383 VNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVS 442
NG T F RGLRQGDPL+P+LF+ E L L + SV ++K + V G ++S
Sbjct: 482 WNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCG-GSKLS 540
Query: 443 LLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKL---AAIAIETGVAHQF 499
+ FADD + EA++ + ++ +L F SG KV+ KSK+ ++ E
Sbjct: 541 HVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISE 600
Query: 500 ASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQS 559
S + C YLG+P+ + +T+ V++++ RLA WK + +S GRI L ++
Sbjct: 601 ESGIGCTKEL--GKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKA 658
Query: 560 VLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGI 619
VLS++P+ +S +P + +R R FLWG++ K+ + W +C+PK GG+G+
Sbjct: 659 VLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGL 718
Query: 620 KDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
+ N++L+ K WR K++LW +V+R
Sbjct: 719 RSARDMNKALVAKVGWRLLQDKESLWARVVR 749
>emb|CAA73798.1| reverse transcriptase [Beta vulgaris subsp. vulgaris]
gi|7484649|pir||T14619 reverse transcriptase - beet
retrotransposon (fragment)
Length = 507
Score = 334 bits (857), Expect = 5e-90
Identities = 162/404 (40%), Positives = 244/404 (60%), Gaps = 5/404 (1%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR LNCWL P+ +++ W K S V +KL+ L+ LK WN+ FG +
Sbjct: 109 FRFLNCWLTHPQCMKIISEIW----TKNHNSSV-PDKLRTLKEALKQWNQKEFGIIDDNI 163
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
+ +KI+ LD L E+ R+ + WT L+ ES +R+RW+ EGD N
Sbjct: 164 KHCEEKIHFLDNIANSRLLCTNELQERDDAQLNLWTWLKRSESYWALNSRARWIKEGDSN 223
Query: 121 SGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPF 180
+ +FH+ +R N + + EG P +K ++F+ F + RP G+ F
Sbjct: 224 TRYFHTLATIRRHKNHLQYIKTEGKNISKPGEIKEEAVAYFQHIFAEEFSTRPVFNGLNF 283
Query: 181 KTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVRE 240
LS+S+ S LI P EI +AV +C K+PGPDGFNF+FIK W+V+K D+ K V +
Sbjct: 284 NKLSESECSSLIAPFTHEEIDEAVDSCDAQKAPGPDGFNFKFIKSSWEVIKKDIYKIVED 343
Query: 241 FWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVI 300
FW G+ GCN++FI LIPK P+ NEFRPIS++GC+YK+I+K+LA RL V+ +I
Sbjct: 344 FWASGSLPHGCNSAFIALIPKTQHPRGFNEFRPISMVGCLYKIIAKILARRLQRVMDHLI 403
Query: 301 DERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRM 360
Q +F+ R +LD V++ +E+I +R K +++ K+D+ KA+D++ W++LE+++ +M
Sbjct: 404 GPYQSSFIKGRQILDGVLIASELIDSCRRMKNEAVVLKLDFHKAFDSISWNYLEWVLCQM 463
Query: 361 NFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLA 404
NF W SWI C+ SAS +VL+NGSP+ FK++RGLRQGDPL+
Sbjct: 464 NFPLVWRSWIRSCVMSASAAVLINGSPSSVFKLQRGLRQGDPLS 507
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 333 bits (853), Expect = 1e-89
Identities = 212/661 (32%), Positives = 333/661 (50%), Gaps = 22/661 (3%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR WL VV ++W+ G + L+ + LKDW+KA FG + +
Sbjct: 252 FRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKI 311
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
++ +K+ L + QEE + L + E + Q++R WL EGD+N
Sbjct: 312 LKMERKLKSLRQSPVNDVVIQEEKLIEQQLC----ELFEKEEIMARQRSRVDWLREGDRN 367
Query: 121 SGFFHSTINWKRRTNSIVGLWVEGVWEEDPSR------VKAAVESFFEAKFKSDV*DRPR 174
+ FFH+ + +RRTN I L +D SR +K E F+E F S+ D
Sbjct: 368 TAFFHARASARRRTNRIKELV-----RDDGSRCISQEGIKRMAEVFYENLFSSEPCDSME 422
Query: 175 --LEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKG 232
L+ +P K + D N L EIK A++ G K+PGPDGF F + W +L+
Sbjct: 423 EVLDAIPNK-VGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEE 481
Query: 233 DVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRL 292
+ AVR F G S +VLIPKVN+ L++FRPISL +YK+ SK+LA RL
Sbjct: 482 HICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRL 541
Query: 293 STVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRK--KQPSIIFKVDYEKAYDTVDW 350
+ ++ E Q AFV R + DS +V E +H ++++ K P K+D KAYD V+W
Sbjct: 542 KPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALKIDMMKAYDRVEW 601
Query: 351 SFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLF 410
++L + ++ F WI+ +M C+ S +V +NG T RG+RQGDP++P+LFL
Sbjct: 602 AYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLL 661
Query: 411 VAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRC 470
EGL+ L + +G+K G G +S L FADD++F +A +N+ +LK LR
Sbjct: 662 CTEGLSCLLHKKEVAGELQGIKNGRH-GPPISHLLFADDSIFFAKADSRNVQALKNTLRS 720
Query: 471 FELVSGLKVNFHKSKL-AAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTW 529
+ SG K+N HKS + V S L + YLG+P + +
Sbjct: 721 YCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFF 780
Query: 530 EPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDF 589
+ + +++ R+ W + +S G ++++V A+P +S FRIP + + + D
Sbjct: 781 KFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADH 840
Query: 590 LWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
WG DG K++ W W + PK +GG+G ++ FN+++LG+ WR T +L +V+
Sbjct: 841 WWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVL 900
Query: 650 R 650
+
Sbjct: 901 K 901
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 328 bits (842), Expect = 3e-88
Identities = 172/440 (39%), Positives = 253/440 (57%), Gaps = 5/440 (1%)
Query: 199 EIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVL 258
EIK+A++A NK+PGPDGF F ++FW+V+K D++ EF G N I L
Sbjct: 668 EIKEAIFAMDHNKAPGPDGFPVEFYQKFWEVIKHDLLNLFNEFHSGSLPIFGLNFGVITL 727
Query: 259 IPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVV 318
IPKV + ++RPI L+ YK+ +K+ R+S+V +++ Q AF+ RN+LD V
Sbjct: 728 IPKVEEANRIQQYRPICLLNVSYKIFTKVATNRISSVADNLVNPTQTAFMRGRNILDGVA 787
Query: 319 VLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSAS 378
+++E +HE+ RKK +IFK+D+EKAYD V W FL + F KWISWI + S
Sbjct: 788 IIHETVHELHRKKLNGVIFKIDFEKAYDKVKWPFLLQTLRMKGFSPKWISWIKSFIVGGS 847
Query: 379 VSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKG-VKVGADT 437
V+V VN F+ ++GL+QGDPL+P LF F+ + L L + + G + D
Sbjct: 848 VAVKVNDDVGPFFQTKKGLQQGDPLSPILFNFIVDMLATLINRAKTQGQVDGLIPHLIDG 907
Query: 438 GLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAH 497
GL S+LQ+ DD V ++ ++K +L FE +SGLK+NFHKS+L
Sbjct: 908 GL--SILQYVDDIVLFMNHDLEKAQNMKSVLLAFEQLSGLKINFHKSELYCFGEALEYRD 965
Query: 498 QFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLI 557
Q+A C+V PF YLGIP+ R W+ V+++ +L+ WK KL+S GGR+ LI
Sbjct: 966 QYAQLFGCQVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLI 1025
Query: 558 QSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGL 617
SVLS+LP+ +SF IP+ V+K + + F W K+ KW +C+PKD G L
Sbjct: 1026 NSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQGDGHKKKYQLAKWDIICRPKDQGRL 1085
Query: 618 GIKDLDLFNRSLLGKWLWRW 637
GI DL++ +L+ +WL W
Sbjct: 1086 GIHDLEVI--TLVTRWLRTW 1103
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 328 bits (841), Expect = 3e-88
Identities = 191/630 (30%), Positives = 336/630 (53%), Gaps = 27/630 (4%)
Query: 48 WNKAVFGD-------LTTRREEVVQ-----------KINILDVKEEE--TGLSQEEVATR 87
WNKA+ G + T R+ + + +IN L ++ + +++ E T
Sbjct: 621 WNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTI 680
Query: 88 ESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLW-VEGVW 146
+ + R E QK+R++W+ EGD+N+ FFH+ + N +V + EG+
Sbjct: 681 SHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMI 740
Query: 147 EEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFKTL-SDSDNSVLIGPMDEVEIKDAVW 205
+ + FF ++S+ ++ FK + ++ N L + ++EI +A+
Sbjct: 741 YRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAIC 800
Query: 206 ACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSP 265
G +K+PGPDG RF K W+++ DVIK V+ F+R + N + I +IPK+ +P
Sbjct: 801 HIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNP 860
Query: 266 QPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIH 325
+ L+++RPI+L +YK+ISK L RL + ++ + Q AF+ R + D+V++ +E++H
Sbjct: 861 ETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMH 920
Query: 326 EVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVL 382
+K +K+ S + K D KAYD V+W+FLE M F WI WIMG ++S + SVL
Sbjct: 921 SLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVL 980
Query: 383 VNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVS 442
VNG P G + +RG+RQGDPL+P+LF+ A+ LN L +N V +G+++G V+
Sbjct: 981 VNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVP-GVT 1039
Query: 443 LLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLA-AIAIETGVAHQFAS 501
LQFADD++F ++ ++N +LK + +E SG K+N KS + + ++ +
Sbjct: 1040 HLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKN 1099
Query: 502 FLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVL 561
L + YLG+P + +I++++ R + W K +S G+ +++SV
Sbjct: 1100 ILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVA 1159
Query: 562 SALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKD 621
++P+ +S F++P +V ++ +F W + + I W+ W + K GGLG +D
Sbjct: 1160 MSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRD 1219
Query: 622 LDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
L FN +LL K +WR +L+ ++++A
Sbjct: 1220 LAKFNDALLAKQVWRMINNPNSLFARIMKA 1249
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 328 bits (841), Expect = 3e-88
Identities = 191/630 (30%), Positives = 336/630 (53%), Gaps = 27/630 (4%)
Query: 48 WNKAVFGD-------LTTRREEVVQ-----------KINILDVKEEE--TGLSQEEVATR 87
WNKA+ G + T R+ + + +IN L ++ + +++ E T
Sbjct: 641 WNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTI 700
Query: 88 ESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLW-VEGVW 146
+ + R E QK+R++W+ EGD+N+ FFH+ + N +V + EG+
Sbjct: 701 SHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMI 760
Query: 147 EEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFKTL-SDSDNSVLIGPMDEVEIKDAVW 205
+ + FF ++S+ ++ FK + ++ N L + ++EI +A+
Sbjct: 761 YRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAIC 820
Query: 206 ACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSP 265
G +K+PGPDG RF K W+++ DVIK V+ F+R + N + I +IPK+ +P
Sbjct: 821 HIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNP 880
Query: 266 QPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIH 325
+ L+++RPI+L +YK+ISK L RL + ++ + Q AF+ R + D+V++ +E++H
Sbjct: 881 ETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMH 940
Query: 326 EVKRKKQPS---IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVL 382
+K +K+ S + K D KAYD V+W+FLE M F WI WIMG ++S + SVL
Sbjct: 941 SLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVL 1000
Query: 383 VNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVS 442
VNG P G + +RG+RQGDPL+P+LF+ A+ LN L +N V +G+++G V+
Sbjct: 1001 VNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVP-GVT 1059
Query: 443 LLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLA-AIAIETGVAHQFAS 501
LQFADD++F ++ ++N +LK + +E SG K+N KS + + ++ +
Sbjct: 1060 HLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKN 1119
Query: 502 FLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVL 561
L + YLG+P + +I++++ R + W K +S G+ +++SV
Sbjct: 1120 ILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVA 1179
Query: 562 SALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKD 621
++P+ +S F++P +V ++ +F W + + I W+ W + K GGLG +D
Sbjct: 1180 MSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRD 1239
Query: 622 LDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
L FN +LL K +WR +L+ ++++A
Sbjct: 1240 LAKFNDALLAKQVWRMINNPNSLFARIMKA 1269
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 327 bits (839), Expect = 6e-88
Identities = 206/652 (31%), Positives = 327/652 (49%), Gaps = 17/652 (2%)
Query: 7 WLDDPRITTVVTSTWKDMKVK-GWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQ 65
W +P V+ W + VK G + L + L+ W+K ++ E+ +
Sbjct: 886 WEREPESVQVIEEAWINAGVKTDLGD--INIALGRVMSALRSWSKTKVKNVGKELEKARK 943
Query: 66 KINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFH 125
K+ L ++ +L+ E L Q++R WL EGD+N+ FFH
Sbjct: 944 KLEDLIASNAARSSIRQATDHMNEMLY-------REEMLWLQRSRVNWLKEGDRNTRFFH 996
Query: 126 STINWKRRTNSIVGLWVE-GVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFKT-L 183
S W+ + N I L E G S ++ +F+ +K+D P F+ +
Sbjct: 997 SRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQEKV 1056
Query: 184 SDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWR 243
+D+ N L E EI A++ G KSP PDGF RF ++ W LK D+I AVR F++
Sbjct: 1057 TDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAVRNFFQ 1116
Query: 244 RGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDER 303
G +G N + IVLIPK + P L ++RPISL +YKV+SK L RL ++ ++ +
Sbjct: 1117 SGLMPKGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKE 1176
Query: 304 QFAFVGNRNMLDSVVVLNEVIHEVKRKKQ---PSIIFKVDYEKAYDTVDWSFLEYMMGRM 360
Q AF+ R + D+ ++ E H +++ K+ + +K+D KAYD VDW FLE + ++
Sbjct: 1177 QSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKL 1236
Query: 361 NFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQ 420
F +W+SWIM C+ + SV NG+ F RGLRQG+PL+PFLFLFVA+GL+ L +
Sbjct: 1237 GFAHRWVSWIMLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLK 1296
Query: 421 NSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVN 480
V + +K+ +S L FADDT+ +A + +K +L + +G +N
Sbjct: 1297 EKVAQNSLTPLKI-CRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLIN 1355
Query: 481 FHK-SKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNR 539
K S L A + V+ + L + YLG P ++ + K+ R
Sbjct: 1356 PAKCSILFGEASPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKR 1415
Query: 540 LALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKR 599
+ W + +S GG+ LI++V+ A+P+ + F+ P V ++ R+F WGA +G +R
Sbjct: 1416 VIQWGENFLSSGGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNGRRR 1475
Query: 600 IAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
W W + + K GGLG +D LFN++LL + WR +L QV++A
Sbjct: 1476 THWRAWDSLTKAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKA 1527
>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 849
Score = 327 bits (837), Expect = 1e-87
Identities = 196/597 (32%), Positives = 306/597 (50%), Gaps = 14/597 (2%)
Query: 60 REEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQ 119
+E ++++I ++ + + LS +E R L + E ++ +WL EGD
Sbjct: 16 KENLMREIKNIEDEADHRNLSSDEWQKRYFLEGKLNQIYFDEEKYWQGRSGEKWLLEGDA 75
Query: 120 NSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVP 179
N+ FFH N ++R + I L +G E+P+ +KA + F++ F ++V + L
Sbjct: 76 NTSFFHGVANGRKRKSLIRALEEDGRIIEEPAELKAHIYQFYKNLFGAEVAPKIFLSQDM 135
Query: 180 FK---TLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIK 236
+ LS + LI P E+ A+ + +PGPDGF F + FW L+ D K
Sbjct: 136 WMHRGRLSQEEREHLIRPFTFEEMDQALKQMKTDTAPGPDGFTVSFYRAFWPQLR-DQFK 194
Query: 237 AVREFWRRGA---WSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLS 293
+ + G W N I LIPKV + FRPI L+ +K+I+K+L RL+
Sbjct: 195 EMLDLLFEGRLDLWR--INYGVISLIPKVKDANTIKAFRPICLLNVCFKLITKILTNRLT 252
Query: 294 TVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFL 353
V VI E Q AF+ R +LD V++L+EV+HEVK+ Q II K+D+EKAYD V WSFL
Sbjct: 253 LVAHNVIGESQTAFIPGRFILDGVIILHEVLHEVKKTHQSGIILKLDFEKAYDKVQWSFL 312
Query: 354 EYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAE 413
++ + F KWI WI V++ +NG FK RG+RQGDPL+P LF VA+
Sbjct: 313 FDVLQKKGFDDKWIKWIKSATIDGRVAININGEIDQYFKTFRGVRQGDPLSPLLFNIVAD 372
Query: 414 GLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFEL 473
L+ + + +G+ G ++ LQ+ADDT+ QN+++ K IL CFE
Sbjct: 373 ALSEILLKAKEAGHLEGLVPHLVQG-GLTHLQYADDTILFMTNNDQNVITTKFILHCFEA 431
Query: 474 VSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVI 533
+SGLK+N+ KS++ + + A NCK P YLGIP+
Sbjct: 432 MSGLKINYQKSEVIVLGENPEETKRVADLFNCKCGKFPMTYLGIPISEGRLTAADLAIPP 491
Query: 534 KKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGA 593
K+ RL+ WK L+S+GG+ L+ S P+ + F+ +P + + I F W
Sbjct: 492 DKIEKRLSTWKCGLLSYGGKAILVNS----SPMYMMGFYMLPEQTHQRMDSIRSRFFWEG 547
Query: 594 SDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
+ ++ VKW +C+PKD GGLG D + N+ LL KW+++ + ++ C ++R
Sbjct: 548 IERKRKYHMVKWEALCRPKDFGGLGFLDTRVMNKVLLCKWIFKLESGQKDPCCDLLR 604
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 325 bits (834), Expect = 2e-87
Identities = 212/661 (32%), Positives = 344/661 (51%), Gaps = 42/661 (6%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR WL ++T++W G + V L LR +LK WNK VFG++ R+
Sbjct: 55 FRFEAAWLSHEGFKELLTASWDT----GLSTPVA---LNRLRWQLKKWNKEVFGNIHVRK 107
Query: 61 EEVVQKI----NILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAE 116
E+VV + ++L+V + + L +E+ +LL +F +L E+L QK+R + LA
Sbjct: 108 EKVVSDLKAVQDLLEVVQTDDLLMKED-----TLLKEFDVLLHQEETLWFQKSREKLLAL 162
Query: 117 GDQNSGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFK----SDV*D 171
GD+N+ FFH++ +RR N I L E W + ++ ++ + S V
Sbjct: 163 GDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRG 222
Query: 172 RPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLK 231
EG P T + +N L P E+ AV + G K+PGPDG+ F +Q W+ +
Sbjct: 223 TLPTEGFPRLTREEKNN--LNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVG 280
Query: 232 GDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATR 291
V K V EF+ G + N +VL+ KV P+ + +FRP+SL ++K+I+K++ R
Sbjct: 281 ESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIR 340
Query: 292 LSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKK--QPSIIFKVDYEKAYDTVD 349
L V+ K+I Q +F+ R D++VV+ E +H ++RKK + ++ K+D EKAYD +
Sbjct: 341 LKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIR 400
Query: 350 WSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFL 409
W FL + WI IM C+ +S+L NG T F ERGLRQGDP++P+LF+
Sbjct: 401 WDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFV 460
Query: 410 FVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILR 469
E L + +V +K + + + G +VS + FADD + EA++ VSL+
Sbjct: 461 LCIERLCHQIETAVGRGDWKSISI-SQGGPKVSHVCFADDLILFAEASVAQKVSLEKSKI 519
Query: 470 CFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTW 529
F N + I ETG+ YLG+PV + T+
Sbjct: 520 FF------SNNVSRDLEGLITAETGIGSTREL----------GKYLGMPVLQKRINKDTF 563
Query: 530 EPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDF 589
V++++ +RL+ WK + +S GRI L ++VL ++P+ +S +PA +++ +++ R+F
Sbjct: 564 GEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNF 623
Query: 590 LWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
LWG++ ++ + W VC+PK GGLG++ NR+LL K WR K +LW +V+
Sbjct: 624 LWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVL 683
Query: 650 R 650
R
Sbjct: 684 R 684
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 324 bits (830), Expect = 6e-87
Identities = 187/557 (33%), Positives = 305/557 (54%), Gaps = 19/557 (3%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWK---RRTNSIVGLWVEGVWEEDPSRVKAAVESFFEA 163
QK+R++W+ EGDQN+G+FH+ + R N+I+ +G + + FF
Sbjct: 720 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMD--DQGRMFTGDKEIGNHAQDFFTN 777
Query: 164 KFKSDV*DRPRLEGVPFK-TLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRF 222
F ++ ++ FK T++++ N L + EI DA+ G +K+PGPDG RF
Sbjct: 778 IFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 837
Query: 223 IKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYK 282
K WD++ DVI V++F+ N + I +IPK+ +P L+++RPI+L +YK
Sbjct: 838 YKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYK 897
Query: 283 VISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKV 339
VISK L RL + + ++ + Q AF+ R + D+V++ +EV+H +K +K+ S + K
Sbjct: 898 VISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKT 957
Query: 340 DYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQ 399
D KAYD V+W FLE M FC+KWI WIM ++S SVL+NGSP G RG+RQ
Sbjct: 958 DVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQ 1017
Query: 400 GDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQ 459
GDPL+P+LF+ + L+ L +GV++G + ++ LQFADD++F +A ++
Sbjct: 1018 GDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPAITHLQFADDSLFFCQANVR 1076
Query: 460 NLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIP-----FVY 514
N +LK + +E SG K+N KS I + V S L +++ IP Y
Sbjct: 1077 NCQALKDVFDVYEYYSGQKINVQKS---MITFGSRVYGSTQSRLK-QILEIPNQGGGGKY 1132
Query: 515 LGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRI 574
LG+P + +E +I +++ R + W + +S G+ +++SV A+P+ +S F++
Sbjct: 1133 LGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKL 1192
Query: 575 PACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWL 634
P +V ++ +F W + + I WV W + K GGLG +DL FN +LL K
Sbjct: 1193 PKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQA 1252
Query: 635 WRWRTKKQALWCQVIRA 651
WR +L+ +V++A
Sbjct: 1253 WRLIQYPNSLFARVMKA 1269
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 324 bits (830), Expect = 6e-87
Identities = 187/557 (33%), Positives = 305/557 (54%), Gaps = 19/557 (3%)
Query: 107 QKARSRWLAEGDQNSGFFHSTINWK---RRTNSIVGLWVEGVWEEDPSRVKAAVESFFEA 163
QK+R++W+ EGDQN+G+FH+ + R N+I+ +G + + FF
Sbjct: 494 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMD--DQGRMFTGDKEIGNHAQDFFTN 551
Query: 164 KFKSDV*DRPRLEGVPFK-TLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRF 222
F ++ ++ FK T++++ N L + EI DA+ G +K+PGPDG RF
Sbjct: 552 IFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 611
Query: 223 IKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYK 282
K WD++ DVI V++F+ N + I +IPK+ +P L+++RPI+L +YK
Sbjct: 612 YKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYK 671
Query: 283 VISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPS---IIFKV 339
VISK L RL + + ++ + Q AF+ R + D+V++ +EV+H +K +K+ S + K
Sbjct: 672 VISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKT 731
Query: 340 DYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQ 399
D KAYD V+W FLE M FC+KWI WIM ++S SVL+NGSP G RG+RQ
Sbjct: 732 DVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQ 791
Query: 400 GDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQ 459
GDPL+P+LF+ + L+ L +GV++G + ++ LQFADD++F +A ++
Sbjct: 792 GDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPAITHLQFADDSLFFCQANVR 850
Query: 460 NLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIP-----FVY 514
N +LK + +E SG K+N KS I + V S L +++ IP Y
Sbjct: 851 NCQALKDVFDVYEYYSGQKINVQKS---MITFGSRVYGSTQSKLK-QILEIPNQGGGGKY 906
Query: 515 LGIPVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRI 574
LG+P + +E +I +++ R + W + +S G+ +++SV A+P+ +S F++
Sbjct: 907 LGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKL 966
Query: 575 PACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWL 634
P +V ++ +F W + + I WV W + K GGLG +DL FN +LL K
Sbjct: 967 PKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQA 1026
Query: 635 WRWRTKKQALWCQVIRA 651
WR +L+ +V++A
Sbjct: 1027 WRLIQYPNSLFARVMKA 1043
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 321 bits (823), Expect = 4e-86
Identities = 194/655 (29%), Positives = 332/655 (50%), Gaps = 18/655 (2%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR N D+ + ++ TW + G + K+ R + +W +
Sbjct: 138 FRFDNRLRDNDVVNALIQETWTNA-----GDASVLTKMNQCRREIINWTRLQ----NLNS 188
Query: 61 EEVVQKINILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQN 120
E+++K EE T +L + E Q++R WL GD+N
Sbjct: 189 AELIEKTQ--KALEEALTADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRN 246
Query: 121 SGFFHSTINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFKSDV*-DRPRLEGV 178
+G+FH+ +R N + + + GV + + ++ + +F+ F S+ D ++
Sbjct: 247 TGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEA 306
Query: 179 PFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAV 238
+S DN L ++ E+KDAV++ +K+PGPDGF F +W ++ DV + +
Sbjct: 307 IEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREI 366
Query: 239 REFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGK 298
R F+ + R N + I LIPK P+ + ++RPI+L YK+++K++ R+ ++ K
Sbjct: 367 RLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPK 426
Query: 299 VIDERQFAFVGNRNMLDSVVVLNEVIHEVK---RKKQPSIIFKVDYEKAYDTVDWSFLEY 355
+I E Q AFV R + D+V++ +EV+H ++ KK S+ K D KAYD V+W FL+
Sbjct: 427 LISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKK 486
Query: 356 MMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGL 415
++ R F S WI W++ C+ S S S L+NG+P G+ RGLRQGDPL+P LF+ E L
Sbjct: 487 VLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVL 546
Query: 416 NGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVS 475
+GL + RL + GV+V + G V+ L FADDT+F ++ ++ L IL + S
Sbjct: 547 SGLCTRAQRLRQLPGVRVSIN-GPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKAS 605
Query: 476 GLKVNFHKSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIK 534
G +NFHKS + + V Q L + YLG+P + +I
Sbjct: 606 GQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIID 665
Query: 535 KMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGAS 594
K+R + W + +S G+ ++++VL+++PL +S F++P+ + + ++ F W
Sbjct: 666 KIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTK 725
Query: 595 DGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVI 649
++ +WV W + PK+ GGLG +D++ N SLL K WR ++L +++
Sbjct: 726 PDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRIL 780
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 321 bits (823), Expect = 4e-86
Identities = 201/651 (30%), Positives = 324/651 (48%), Gaps = 15/651 (2%)
Query: 7 WLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRREEVVQK 66
W +P T V+ W K + K K + L+ W++A ++ E+ +K
Sbjct: 980 WEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTA-LRSWSRAKVKNVGRELEKARKK 1038
Query: 67 INILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQKARSRWLAEGDQNSGFFHS 126
+ L + + + LL+ E L Q++R WL + D+N+ FFHS
Sbjct: 1039 LAELIESNADRTVIRNATDHMNELLY-------REEMLWLQRSRVNWLKDEDRNTKFFHS 1091
Query: 127 TINWKRRTNSIVGLW-VEGVWEEDPSRVKAAVESFFEAKFKSDV*DRPR-LEGVPFKTLS 184
W+ + N I L ++++ +F+ + +D P + + + ++
Sbjct: 1092 RAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTADPNLNPETVTRLIQEKVT 1151
Query: 185 DSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRR 244
D N L E EI A++ G KSPGPDGF RF ++ W +K D+I AVR F++
Sbjct: 1152 DIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQT 1211
Query: 245 GAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQ 304
G G N + IVLIPK P L +FRPISL +YKV+SK L RL ++ ++ Q
Sbjct: 1212 GLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQ 1271
Query: 305 FAFVGNRNMLDSVVVLNEVIHEVKRKKQ---PSIIFKVDYEKAYDTVDWSFLEYMMGRMN 361
AFV R + D+ ++ E H +++ K+ + +K+D KAYD VDW FLE M ++
Sbjct: 1272 SAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLG 1331
Query: 362 FCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQN 421
F +W++WIM C+ S V NG+ F RGLRQGDPL PFLFLFVA+GL+ L +
Sbjct: 1332 FARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKE 1391
Query: 422 SVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNF 481
V + KV +S L FADDT+ +A + +K +L + + +G +N
Sbjct: 1392 KVAQNSLTPFKV-CRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINP 1450
Query: 482 HK-SKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRNRL 540
K S L A V+ + L + YLG P ++ + K+ R+
Sbjct: 1451 AKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRV 1510
Query: 541 ALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRI 600
W + +S GG+ LI++V+ A+P+ + F++P V+ ++ ++F W + +G ++
Sbjct: 1511 IQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKT 1570
Query: 601 AWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
W W + +PK +GGLG +D LFN++LL + WR T +L +V++A
Sbjct: 1571 HWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKA 1621
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana] gi|7488321|pir||T01871
RNA-directed DNA polymerase homolog T24M8.8 -
Arabidopsis thaliana
Length = 1164
Score = 315 bits (808), Expect = 2e-84
Identities = 205/668 (30%), Positives = 337/668 (49%), Gaps = 44/668 (6%)
Query: 1 FRVLNCWLDDPRITTVVTSTWKDMKVKGWGSYVLKEKLKGLRGRLKDWNKAVFGDLTTRR 60
FR N L D +++ W V G Y + KLK L+ ++D+++ + D+ R
Sbjct: 146 FRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRT 205
Query: 61 EEVVQKI----NILDVKEEETGLSQEEVATRESLLFDFWTVLRHHE-SLLCQKARSRWLA 115
+E + ++L + + E R+ W +L E S Q++R WL
Sbjct: 206 KEAHDALLLAQSVLLASPCPSNAAIEAETQRK------WRILAEAEASFFYQRSRVNWLR 259
Query: 116 EGDQNSGFFHSTINWKRRTNSI------VGLWVEGVWEEDPSRVKAAVESFFEAKFKSDV 169
EGD NS +FH + ++ N I VG +EG + V+ +F++ S+
Sbjct: 260 EGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVE-----YFQSNLGSE- 313
Query: 170 *DRPRLEGVPFKTLSDSDNSV-----------LIGPMDEVEIKDAVWACGGNKSPGPDGF 218
+G+P +D N + L P +IK+A ++ NK+ GPDGF
Sbjct: 314 ------QGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGF 367
Query: 219 NFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIG 278
+ F W ++ G+V +A+ EF+ G + NA+ +VLIPK+ + +++FRPIS +
Sbjct: 368 SPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLN 427
Query: 279 CIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKK-QPSIIF 337
+YKVISKLL RL + I Q AF+ R L++V++ E++H +K PS +
Sbjct: 428 TVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSML 487
Query: 338 KVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGL 397
KVD KA+D+V W F+ + +N K+ WI+ CL +AS SV++NG G F +GL
Sbjct: 488 KVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGL 547
Query: 398 RQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEAT 457
RQGDP++P+LF+ E +GL Q+ R + + LE+S L FADD + +
Sbjct: 548 RQGDPMSPYLFVLAMEVFSGLLQS--RYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGK 605
Query: 458 IQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKVMTIPFVYLGI 517
+L + L F SGL +N +K++L + + AS+ K+ ++P YLG+
Sbjct: 606 SSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASY-GFKLGSLPVRYLGL 664
Query: 518 PVGARASCLKTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPAC 577
P+ +R + + P+I+K+ R W +L+SF GR+ L+ SV+S + ++S F +P
Sbjct: 665 PLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLG 724
Query: 578 VVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRW 637
+K + FLW + K IA V W VC PK GG+G++ + NR+L + +W
Sbjct: 725 CIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLL 784
Query: 638 RTKKQALW 645
+ +LW
Sbjct: 785 FSNSGSLW 792
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 315 bits (808), Expect = 2e-84
Identities = 192/592 (32%), Positives = 299/592 (50%), Gaps = 11/592 (1%)
Query: 69 ILDVKEEETGLSQEEVATRESLLFDFWTVLRH----HESLLCQKARSRWLAEGDQNSGFF 124
I+ +K E +Q + + + D L+ E QK+RS W+ GD NS +F
Sbjct: 146 IVHIKNEFIDAAQRDDSRTSEEITDLTIRLKEAYIDEEQYWYQKSRSLWMKVGDNNSKYF 205
Query: 125 HSTINWKRRTNSIVGLWVE-GVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFKTL 183
H+ +R N I+GL E G W + V+ S+FE F KTL
Sbjct: 206 HALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVSYFETLFNKSNPQNIAESLSEVKTL 265
Query: 184 -SDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFW 242
+D N L P E E++ A++ K+PGPDG F ++ W +K D++ V F
Sbjct: 266 ITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGMTALFFQKPWATIKMDMLFLVNSFL 325
Query: 243 RRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDE 302
+ G + + N + I LIPK P + E RPISL YK+ISK+L RL ++ +I E
Sbjct: 326 QDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCNVGYKIISKILCQRLKKILPSLISE 385
Query: 303 RQFAFVGNRNMLDSVVVLNEVIHEVKRK---KQPSIIFKVDYEKAYDTVDWSFLEYMMGR 359
AFV R + D++++ E+ H ++ K + K D KAYD V+W+F+E ++ +
Sbjct: 386 THSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKK 445
Query: 360 MNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLF 419
M FC KWISWIM C+ + VL+NG P G +RGLRQGDPL+P+LF+ E L
Sbjct: 446 MGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANI 505
Query: 420 QNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKV 479
+ + + G+KV A VS L FA+D++F +A + + IL+ +E VSG +
Sbjct: 506 RKAEQEKLITGIKV-ATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMI 564
Query: 480 NFHKSKLA-AIAIETGVAHQFASFLNCKVMTIPFVYLGIPVGARASCLKTWEPVIKKMRN 538
NF KS + + + + S L + YLG+P S + + V +++
Sbjct: 565 NFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQT 624
Query: 539 RLALWKQKLISFGGRICLIQSVLSALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGK 598
R+ W K +S GG+ +I+SV++ LP +S FR+P + + F W + +
Sbjct: 625 RINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDGESR 684
Query: 599 RIAWVKWLDVCQPKDVGGLGIKDLDLFNRSLLGKWLWRWRTKKQALWCQVIR 650
+ W+ W +C K GGLG + ++ FN +LL K LWR T +L+ +V +
Sbjct: 685 GMHWMAWNKLCSSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFAKVFK 736
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,125,340,243
Number of Sequences: 2540612
Number of extensions: 47144530
Number of successful extensions: 125376
Number of sequences better than 10.0: 1286
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 122318
Number of HSP's gapped (non-prelim): 1697
length of query: 651
length of database: 863,360,394
effective HSP length: 135
effective length of query: 516
effective length of database: 520,377,774
effective search space: 268514931384
effective search space used: 268514931384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)
Lotus: description of TM0060.14