BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.4
(457 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM93675.1| putative glycine-rich protein [Oryza sativa (japo... 73 2e-11
emb|CAB81034.1| hypothetical protein [Arabidopsis thaliana] gi|2... 64 1e-08
ref|NP_192401.2| expressed protein [Arabidopsis thaliana] 64 1e-08
ref|XP_474398.1| OSJNBa0032F06.19 [Oryza sativa (japonica cultiv... 39 0.26
ref|XP_341224.2| PREDICTED: similar to RIKEN cDNA 2310045A20 [Ra... 38 0.58
dbj|BAB73085.1| chromosome segregation protein [Nostoc sp. PCC 7... 35 3.8
ref|ZP_00161527.2| COG1196: Chromosome segregation ATPases [Anab... 35 3.8
ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultiv... 35 4.9
emb|CAB78889.1| heat shock transcription factor-like protein [Ar... 35 4.9
ref|XP_600312.1| PREDICTED: similar to Fibrinogen alpha chain [B... 35 6.4
gb|AAC67562.1| fibrinogen A-alpha chain [Bos taurus] 35 6.4
pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fib... 35 6.4
sp|P02672|FIBA_BOVIN Fibrinogen alpha chain [Contains: Fibrinope... 35 6.4
>gb|AAM93675.1| putative glycine-rich protein [Oryza sativa (japonica
cultivar-group)] gi|31432881|gb|AAP54457.1| putative
glycine-rich protein [Oryza sativa (japonica
cultivar-group)] gi|37535736|ref|NP_922170.1| putative
glycine-rich protein [Oryza sativa (japonica
cultivar-group)]
Length = 1291
Score = 72.8 bits (177), Expect = 2e-11
Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 57 LSSQTGLEGQLLCGSKGDEEPPLGR--SRTGAKNAGQGYTFEEVKIFFLALLDLCRQISR 114
L T GQ++ G+KG EE P+G +R G+ NAGQGYT +EVK+ FL L+DLC++ +
Sbjct: 1015 LEDGTTSRGQMV-GAKGAEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTAT 1073
Query: 115 LQHPLPVSQV 124
LQHPLP SQV
Sbjct: 1074 LQHPLPSSQV 1083
>emb|CAB81034.1| hypothetical protein [Arabidopsis thaliana] gi|25372623|pir||H85061
hypothetical protein AT4g04920 [imported] - Arabidopsis
thaliana
Length = 1196
Score = 63.9 bits (154), Expect = 1e-08
Identities = 31/59 (52%), Positives = 41/59 (68%)
Query: 66 QLLCGSKGDEEPPLGRSRTGAKNAGQGYTFEEVKIFFLALLDLCRQISRLQHPLPVSQV 124
QL G KG +E ++ G+ NAGQGYT+EEV++ F L+DLC++ S L HPLP SQV
Sbjct: 960 QLGTGVKGIDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQV 1018
>ref|NP_192401.2| expressed protein [Arabidopsis thaliana]
Length = 1250
Score = 63.9 bits (154), Expect = 1e-08
Identities = 31/59 (52%), Positives = 41/59 (68%)
Query: 66 QLLCGSKGDEEPPLGRSRTGAKNAGQGYTFEEVKIFFLALLDLCRQISRLQHPLPVSQV 124
QL G KG +E ++ G+ NAGQGYT+EEV++ F L+DLC++ S L HPLP SQV
Sbjct: 1014 QLGTGVKGIDENSARTTKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQV 1072
>ref|XP_474398.1| OSJNBa0032F06.19 [Oryza sativa (japonica cultivar-group)]
gi|38345562|emb|CAE03436.2| OSJNBa0032F06.19 [Oryza
sativa (japonica cultivar-group)]
Length = 1575
Score = 39.3 bits (90), Expect = 0.26
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 209 LASWLEEEQVLELL--SNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRPLIEV 266
LASWL E + L +LL+AQ + +QA +S+ G W + Q + ++
Sbjct: 1349 LASWLSERNDMNTLIHHHLLRAQQRMKSQADSKRSERCFAVGDWVFMKLQPYIQQSVMTR 1408
Query: 267 PKQKSNFDSHGLLKVVMTIGMEEYELKKKALSV 299
+K +F +G +V+ IG+ Y L+ A S+
Sbjct: 1409 SNRKLSFKYYGPFQVLQRIGLVAYRLQLPAHSL 1441
>ref|XP_341224.2| PREDICTED: similar to RIKEN cDNA 2310045A20 [Rattus norvegicus]
Length = 1621
Score = 38.1 bits (87), Expect = 0.58
Identities = 50/195 (25%), Positives = 79/195 (39%), Gaps = 25/195 (12%)
Query: 115 LQHPLPVSQVDFIHLTKMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGN-TLISCHFWP 173
++HP+ VS V +L+AWI HW +N R E+ L H A N TL+ P
Sbjct: 271 IRHPISVSPV----------ILRAWITHWHSGGGLNVRGEENLLHAVAKNYTLLQT--VP 318
Query: 174 HGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQVLELLSNLLKAQDLLS 233
R H + + LW ++ NR C L +++ Q L S +
Sbjct: 319 PFERPFKDHQVCLEWNMDYLWS--LWANRIPQCPLESAYTGSIQRLRGHST------APT 370
Query: 234 AQAKRLQSQLDLL----AGHWENPQSQLPKSRPLIEVPKQKSNFDSHGLLKVVMTIGMEE 289
Q +R L +L H + Q LP + + + K NFDS L V ++ +
Sbjct: 371 YQCRRPIKMLIVLHCPDQSHHLHQQVALPPATFHVSLLKSSLNFDSSQALCVYLSWDVHC 430
Query: 290 YELKKKALSVPQQNQ 304
+L + ++ NQ
Sbjct: 431 VQLNEVKINRASSNQ 445
>dbj|BAB73085.1| chromosome segregation protein [Nostoc sp. PCC 7120]
gi|17228623|ref|NP_485171.1| chromosome segregation
protein [Nostoc sp. PCC 7120] gi|25308185|pir||AE1947
chromosome segregation protein [imported] - Nostoc sp.
(strain PCC 7120)
Length = 1208
Score = 35.4 bits (80), Expect = 3.8
Identities = 35/112 (31%), Positives = 55/112 (48%), Gaps = 7/112 (6%)
Query: 215 EEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRPLIEVPKQ-KSNF 273
E ++ +L LK ++ L+A LQSQL L NP ++P L E+ K+ +S
Sbjct: 946 EWEIQKLEETQLKRREDLTA----LQSQLQELVPELPNPLPEVPDKVDLEELQKELRSLA 1001
Query: 274 DSHGLLKVVMTIGMEEYELKKKALSVPQQNQPLFILFLEGNELLVQIPQVMT 325
++ V + +EEYE +K L + +Q L L E ELL++I T
Sbjct: 1002 KRLQAMEPVNMLALEEYERTQKRLE--ELSQKLQTLEGERTELLLRIENFTT 1051
>ref|ZP_00161527.2| COG1196: Chromosome segregation ATPases [Anabaena variabilis ATCC
29413]
Length = 1208
Score = 35.4 bits (80), Expect = 3.8
Identities = 37/120 (30%), Positives = 53/120 (43%), Gaps = 16/120 (13%)
Query: 220 ELLSNLLKAQDLL-------SAQAKR------LQSQLDLLAGHWENPQSQLPKSRPLIEV 266
E+ S+LL+ Q L Q KR LQSQL L NP ++P L E+
Sbjct: 934 EVRSHLLRQQQLEWEIQKLEETQLKRREDVTALQSQLQELIPELPNPLPEVPDKVDLEEL 993
Query: 267 PKQKSNFDSH-GLLKVVMTIGMEEYELKKKALSVPQQNQPLFILFLEGNELLVQIPQVMT 325
K+ + ++ V + +EEYE +K L + Q L L E ELL++I T
Sbjct: 994 QKELRSLSKRLQAMEPVNMLALEEYERTQKRLE--ELTQKLETLEAERTELLLRIENFTT 1051
>ref|XP_471847.1| OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
gi|38347666|emb|CAE05600.2| OSJNBa0054D14.1 [Oryza sativa
(japonica cultivar-group)] gi|38346992|emb|CAD40278.2|
OSJNBb0062H02.17 [Oryza sativa (japonica cultivar-group)]
Length = 1629
Score = 35.0 bits (79), Expect = 4.9
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 209 LASWLEEEQVLELL--SNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRPLIEV 266
L WL E + ++ L +LL+AQ + QA + +S+ G W + Q + ++
Sbjct: 1404 LVEWLHEREKMQALIRDHLLRAQTRMKQQADQHRSERSFAVGDWVYLKLQPFVQQSVVTR 1463
Query: 267 PKQKSNFDSHGLLKVVMTIGMEEYEL 292
+K +F +G +V+ +G Y L
Sbjct: 1464 ANRKLSFRFYGPFQVLDKVGTVAYRL 1489
>emb|CAB78889.1| heat shock transcription factor-like protein [Arabidopsis thaliana]
gi|2832615|emb|CAA16744.1| heat shock transcription
factor-like protein [Arabidopsis thaliana]
gi|7484999|pir||T05024 heat shock transcription factor
homolog F13C5.40 - Arabidopsis thaliana
gi|15234051|ref|NP_193622.1| heat shock transcription
factor family protein [Arabidopsis thaliana]
Length = 291
Score = 35.0 bits (79), Expect = 4.9
Identities = 35/130 (26%), Positives = 60/130 (45%), Gaps = 12/130 (9%)
Query: 143 WEFKDFVNKRQEQFLWHRPAGNTLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNR 202
W ++F N ++F + R NT S F HG R + DS G+ + D+++ G R
Sbjct: 43 WNPEEFYNNLLQRFCFQRI--NTFFSFLF-SHGFRKI----DS--GKWEFANDNFVRGQR 93
Query: 203 EYYCMLLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRP 262
+++ +E+E + L KA+ L + K++Q Q L H P S+LP
Sbjct: 94 HLINNIISDVIEQEVQYDQGMELFKAEKLFARLVKKVQDQ---LPPHNSYPTSKLPFPTK 150
Query: 263 LIEVPKQKSN 272
+ E+ S+
Sbjct: 151 IYEMVDDPSS 160
>ref|XP_600312.1| PREDICTED: similar to Fibrinogen alpha chain [Bos taurus]
Length = 765
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 462 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 506
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 475 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 519
>gb|AAC67562.1| fibrinogen A-alpha chain [Bos taurus]
Length = 391
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 139 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 183
>pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution) gi|6980821|pdb|1DEQ|N Chain N, The
Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution) gi|6980817|pdb|1DEQ|D Chain D, The
Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution) gi|6980814|pdb|1DEQ|A Chain A, The
Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 390
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 293 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 337
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 306 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 350
>sp|P02672|FIBA_BOVIN Fibrinogen alpha chain [Contains: Fibrinopeptide A]
Length = 596
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 293 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 337
Score = 34.7 bits (78), Expect = 6.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 306 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 350
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 823,945,071
Number of Sequences: 2540612
Number of extensions: 35970302
Number of successful extensions: 77141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 77131
Number of HSP's gapped (non-prelim): 24
length of query: 457
length of database: 863,360,394
effective HSP length: 131
effective length of query: 326
effective length of database: 530,540,222
effective search space: 172956112372
effective search space used: 172956112372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0058a.4